data_168D # _entry.id 168D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 168D pdb_0000168d 10.2210/pdb168d/pdb RCSB AHJS55 ? ? WWPDB D_1000170152 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-08-31 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_keywords # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_keywords.text' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 168D _pdbx_database_status.recvd_initial_deposition_date 1994-04-08 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lubini, P.' 1 'Zuercher, W.' 2 'Egli, M.' 3 # _citation.id primary _citation.title ;Stabilizing effects of the RNA 2'-substituent: crystal structure of an oligodeoxynucleotide duplex containing 2'-O-methylated adenosines. ; _citation.journal_abbrev Chem.Biol. _citation.journal_volume 1 _citation.page_first 39 _citation.page_last 45 _citation.year 1994 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1074-5521 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9383369 _citation.pdbx_database_id_DOI '10.1016/1074-5521(94)90039-6' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lubini, P.' 1 ? primary 'Zurcher, W.' 2 ? primary 'Egli, M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA/RNA (5'-D(*GP*CP*GP*TP*)-R(*(A2M)P*)-D(*TP*AP*CP*GP*C)-3') ; 3075.031 2 ? ? ? ? 2 water nat water 18.015 53 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DT)(A2M)(DT)(DA)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGTATACGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 A2M n 1 6 DT n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2M 'RNA linking' n ;2'-O-methyladenosine 5'-(dihydrogen phosphate) ; ? 'C11 H16 N5 O7 P' 361.248 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 A2M 5 5 5 A2M +A A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DC 10 10 10 DC C A . n B 1 1 DG 1 11 11 DG G B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DT 4 14 14 DT T B . n B 1 5 A2M 5 15 15 A2M +A B . n B 1 6 DT 6 16 16 DT T B . n B 1 7 DA 7 17 17 DA A B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DC 10 20 20 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 21 21 HOH HOH A . C 2 HOH 2 22 22 HOH HOH A . C 2 HOH 3 23 23 HOH HOH A . C 2 HOH 4 24 24 HOH HOH A . C 2 HOH 5 28 28 HOH HOH A . C 2 HOH 6 30 30 HOH HOH A . C 2 HOH 7 32 32 HOH HOH A . C 2 HOH 8 33 33 HOH HOH A . C 2 HOH 9 36 36 HOH HOH A . C 2 HOH 10 39 39 HOH HOH A . C 2 HOH 11 41 41 HOH HOH A . C 2 HOH 12 42 42 HOH HOH A . C 2 HOH 13 46 46 HOH HOH A . C 2 HOH 14 48 48 HOH HOH A . C 2 HOH 15 49 49 HOH HOH A . C 2 HOH 16 50 50 HOH HOH A . C 2 HOH 17 52 52 HOH HOH A . C 2 HOH 18 58 58 HOH HOH A . C 2 HOH 19 59 59 HOH HOH A . C 2 HOH 20 66 66 HOH HOH A . C 2 HOH 21 67 67 HOH HOH A . C 2 HOH 22 68 68 HOH HOH A . C 2 HOH 23 69 69 HOH HOH A . C 2 HOH 24 71 71 HOH HOH A . C 2 HOH 25 72 72 HOH HOH A . C 2 HOH 26 73 73 HOH HOH A . D 2 HOH 1 25 25 HOH HOH B . D 2 HOH 2 26 26 HOH HOH B . D 2 HOH 3 27 27 HOH HOH B . D 2 HOH 4 29 29 HOH HOH B . D 2 HOH 5 31 31 HOH HOH B . D 2 HOH 6 34 34 HOH HOH B . D 2 HOH 7 35 35 HOH HOH B . D 2 HOH 8 37 37 HOH HOH B . D 2 HOH 9 38 38 HOH HOH B . D 2 HOH 10 40 40 HOH HOH B . D 2 HOH 11 43 43 HOH HOH B . D 2 HOH 12 44 44 HOH HOH B . D 2 HOH 13 45 45 HOH HOH B . D 2 HOH 14 47 47 HOH HOH B . D 2 HOH 15 51 51 HOH HOH B . D 2 HOH 16 53 53 HOH HOH B . D 2 HOH 17 54 54 HOH HOH B . D 2 HOH 18 55 55 HOH HOH B . D 2 HOH 19 56 56 HOH HOH B . D 2 HOH 20 57 57 HOH HOH B . D 2 HOH 21 60 60 HOH HOH B . D 2 HOH 22 61 61 HOH HOH B . D 2 HOH 23 62 62 HOH HOH B . D 2 HOH 24 63 63 HOH HOH B . D 2 HOH 25 64 64 HOH HOH B . D 2 HOH 26 65 65 HOH HOH B . D 2 HOH 27 70 70 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PROLSQ refinement '(MODIFIED BY G.J.QUIGLEY)' ? 1 MODIFIED refinement 'BY G.J.QUIGLEY' ? 2 # _cell.entry_id 168D _cell.length_a 25.130 _cell.length_b 45.649 _cell.length_c 47.554 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 168D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 168D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.53 _exptl_crystal.density_Matthews 2.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 SPERMINE_HCL ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS-NICOLET _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ELLIOTT GX-21' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 168D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.000 _reflns.number_obs 3576 _reflns.number_all 9702 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 168D _refine.ls_number_reflns_obs 3188 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.193 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 408 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 53 _refine_hist.number_atoms_total 461 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_angle_deg 3.00 ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.100 ? ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.140 ? ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.160 ? ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.120 ? ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 168D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 168D _struct.title ;STABILIZING EFFECTS OF THE RNA 2'-SUBSTITUENT: CRYSTAL STRUCTURE OF AN OLIGODEOXYNUCLEOTIDE DUPLEX CONTAINING 2'-O-METHYLATED ADENOSINES ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 168D _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'A-DNA/RNA, DOUBLE HELIX, MODIFIED, DNA-RNA HYBRID COMPLEX, DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 168D _struct_ref.pdbx_db_accession 168D _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 168D A 1 ? 10 ? 168D 1 ? 10 ? 1 10 2 1 168D B 1 ? 10 ? 168D 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 4 "O3'" ? ? ? 1_555 A A2M 5 P ? ? A DT 4 A A2M 5 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale2 covale one ? A A2M 5 "O3'" ? ? ? 1_555 A DT 6 P ? ? A A2M 5 A DT 6 1_555 ? ? ? ? ? ? ? 1.579 ? ? covale3 covale both ? B DT 4 "O3'" ? ? ? 1_555 B A2M 5 P ? ? B DT 14 B A2M 15 1_555 ? ? ? ? ? ? ? 1.556 ? ? covale4 covale one ? B A2M 5 "O3'" ? ? ? 1_555 B DT 6 P ? ? B A2M 15 B DT 16 1_555 ? ? ? ? ? ? ? 1.587 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A2M 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? A A2M 5 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A2M 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? A A2M 5 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B A2M 5 N1 ? ? A DT 6 B A2M 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B A2M 5 N6 ? ? A DT 6 B A2M 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 28 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 72 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_545 _pdbx_validate_symm_contact.dist 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C6 A DG 1 ? ? N1 A DG 1 ? ? 1.326 1.391 -0.065 0.007 N 2 1 C8 A DG 1 ? ? N9 A DG 1 ? ? 1.330 1.374 -0.044 0.007 N 3 1 C2 A DG 1 ? ? N2 A DG 1 ? ? 1.234 1.341 -0.107 0.010 N 4 1 P A DC 2 ? ? "O5'" A DC 2 ? ? 1.654 1.593 0.061 0.010 N 5 1 N3 A DC 2 ? ? C4 A DC 2 ? ? 1.389 1.335 0.054 0.007 N 6 1 "O3'" A DG 3 ? ? "C3'" A DG 3 ? ? 1.363 1.419 -0.056 0.006 N 7 1 C6 A DG 3 ? ? N1 A DG 3 ? ? 1.338 1.391 -0.053 0.007 N 8 1 C2 A DG 3 ? ? N2 A DG 3 ? ? 1.242 1.341 -0.099 0.010 N 9 1 "O3'" A DA 7 ? ? "C3'" A DA 7 ? ? 1.368 1.419 -0.051 0.006 N 10 1 "C2'" A DC 8 ? ? "C1'" A DC 8 ? ? 1.581 1.519 0.062 0.010 N 11 1 "O3'" A DC 8 ? ? "C3'" A DC 8 ? ? 1.373 1.419 -0.046 0.006 N 12 1 N3 A DC 8 ? ? C4 A DC 8 ? ? 1.380 1.335 0.045 0.007 N 13 1 "O3'" A DG 9 ? ? "C3'" A DG 9 ? ? 1.372 1.419 -0.047 0.006 N 14 1 C6 A DG 9 ? ? N1 A DG 9 ? ? 1.336 1.391 -0.055 0.007 N 15 1 C8 A DG 9 ? ? N9 A DG 9 ? ? 1.318 1.374 -0.056 0.007 N 16 1 C2 A DG 9 ? ? N2 A DG 9 ? ? 1.234 1.341 -0.107 0.010 N 17 1 N3 A DC 10 ? ? C4 A DC 10 ? ? 1.389 1.335 0.054 0.007 N 18 1 C6 B DG 11 ? ? N1 B DG 11 ? ? 1.334 1.391 -0.057 0.007 N 19 1 C8 B DG 11 ? ? N9 B DG 11 ? ? 1.332 1.374 -0.042 0.007 N 20 1 C2 B DG 11 ? ? N2 B DG 11 ? ? 1.227 1.341 -0.114 0.010 N 21 1 "O3'" B DC 12 ? ? "C3'" B DC 12 ? ? 1.376 1.419 -0.043 0.006 N 22 1 C6 B DG 13 ? ? N1 B DG 13 ? ? 1.340 1.391 -0.051 0.007 N 23 1 C8 B DG 13 ? ? N9 B DG 13 ? ? 1.321 1.374 -0.053 0.007 N 24 1 C2 B DG 13 ? ? N2 B DG 13 ? ? 1.229 1.341 -0.112 0.010 N 25 1 "O3'" B DT 14 ? ? "C3'" B DT 14 ? ? 1.364 1.419 -0.055 0.006 N 26 1 P B DC 18 ? ? "O5'" B DC 18 ? ? 1.673 1.593 0.080 0.010 N 27 1 "O3'" B DC 18 ? ? "C3'" B DC 18 ? ? 1.380 1.419 -0.039 0.006 N 28 1 N3 B DC 18 ? ? C4 B DC 18 ? ? 1.385 1.335 0.050 0.007 N 29 1 C6 B DG 19 ? ? N1 B DG 19 ? ? 1.341 1.391 -0.050 0.007 N 30 1 C2 B DG 19 ? ? N2 B DG 19 ? ? 1.235 1.341 -0.106 0.010 N 31 1 N3 B DC 20 ? ? C4 B DC 20 ? ? 1.385 1.335 0.050 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.00 108.30 2.70 0.30 N 2 1 C6 A DG 1 ? ? N1 A DG 1 ? ? C2 A DG 1 ? ? 119.67 125.10 -5.43 0.60 N 3 1 N1 A DG 1 ? ? C2 A DG 1 ? ? N3 A DG 1 ? ? 128.76 123.90 4.86 0.60 N 4 1 C5 A DG 1 ? ? C6 A DG 1 ? ? N1 A DG 1 ? ? 117.89 111.50 6.39 0.50 N 5 1 N1 A DG 1 ? ? C2 A DG 1 ? ? N2 A DG 1 ? ? 122.80 116.20 6.60 0.90 N 6 1 N3 A DG 1 ? ? C2 A DG 1 ? ? N2 A DG 1 ? ? 108.44 119.90 -11.46 0.70 N 7 1 C5 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 120.19 128.60 -8.41 0.60 N 8 1 "O5'" A DC 2 ? ? P A DC 2 ? ? OP1 A DC 2 ? ? 97.16 105.70 -8.54 0.90 N 9 1 C2 A DC 2 ? ? N3 A DC 2 ? ? C4 A DC 2 ? ? 124.09 119.90 4.19 0.50 N 10 1 N3 A DC 2 ? ? C4 A DC 2 ? ? C5 A DC 2 ? ? 116.58 121.90 -5.32 0.40 N 11 1 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 124.56 118.90 5.66 0.60 N 12 1 C5 A DC 2 ? ? C4 A DC 2 ? ? N4 A DC 2 ? ? 126.21 120.20 6.01 0.70 N 13 1 "O5'" A DG 3 ? ? P A DG 3 ? ? OP1 A DG 3 ? ? 98.64 105.70 -7.06 0.90 N 14 1 "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? 103.61 109.40 -5.79 0.80 N 15 1 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 99.30 104.50 -5.20 0.40 N 16 1 C6 A DG 3 ? ? N1 A DG 3 ? ? C2 A DG 3 ? ? 119.53 125.10 -5.57 0.60 N 17 1 N1 A DG 3 ? ? C2 A DG 3 ? ? N3 A DG 3 ? ? 128.37 123.90 4.47 0.60 N 18 1 C5 A DG 3 ? ? C6 A DG 3 ? ? N1 A DG 3 ? ? 117.55 111.50 6.05 0.50 N 19 1 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 110.06 119.90 -9.84 0.70 N 20 1 C5 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 123.62 128.60 -4.98 0.60 N 21 1 P A DT 4 ? ? "O5'" A DT 4 ? ? "C5'" A DT 4 ? ? 109.28 120.90 -11.62 1.60 N 22 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 101.72 108.00 -6.28 0.70 N 23 1 "C3'" A DT 4 ? ? "O3'" A DT 4 ? ? P A A2M 5 ? ? 127.96 119.70 8.26 1.20 Y 24 1 "C3'" A A2M 5 ? ? "O3'" A A2M 5 ? ? P A DT 6 ? ? 127.54 119.70 7.84 1.20 Y 25 1 "O5'" A DT 6 ? ? P A DT 6 ? ? OP1 A DT 6 ? ? 97.80 105.70 -7.90 0.90 N 26 1 "O5'" A DA 7 ? ? P A DA 7 ? ? OP1 A DA 7 ? ? 97.81 105.70 -7.89 0.90 N 27 1 "O4'" A DA 7 ? ? "C4'" A DA 7 ? ? "C3'" A DA 7 ? ? 99.53 104.50 -4.97 0.40 N 28 1 "C3'" A DA 7 ? ? "O3'" A DA 7 ? ? P A DC 8 ? ? 128.25 119.70 8.55 1.20 Y 29 1 P A DC 8 ? ? "O5'" A DC 8 ? ? "C5'" A DC 8 ? ? 135.47 120.90 14.57 1.60 N 30 1 "O4'" A DC 8 ? ? "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 97.65 104.50 -6.85 0.40 N 31 1 C2 A DC 8 ? ? N3 A DC 8 ? ? C4 A DC 8 ? ? 124.74 119.90 4.84 0.50 N 32 1 N3 A DC 8 ? ? C4 A DC 8 ? ? C5 A DC 8 ? ? 117.39 121.90 -4.51 0.40 N 33 1 N1 A DC 8 ? ? C2 A DC 8 ? ? O2 A DC 8 ? ? 125.25 118.90 6.35 0.60 N 34 1 C5 A DC 8 ? ? C4 A DC 8 ? ? N4 A DC 8 ? ? 126.83 120.20 6.63 0.70 N 35 1 "O3'" A DC 8 ? ? P A DG 9 ? ? "O5'" A DG 9 ? ? 115.74 104.00 11.74 1.90 Y 36 1 "O5'" A DG 9 ? ? P A DG 9 ? ? OP1 A DG 9 ? ? 100.13 105.70 -5.57 0.90 N 37 1 "O4'" A DG 9 ? ? "C4'" A DG 9 ? ? "C3'" A DG 9 ? ? 100.44 104.50 -4.06 0.40 N 38 1 C6 A DG 9 ? ? N1 A DG 9 ? ? C2 A DG 9 ? ? 119.24 125.10 -5.86 0.60 N 39 1 N1 A DG 9 ? ? C2 A DG 9 ? ? N3 A DG 9 ? ? 129.56 123.90 5.66 0.60 N 40 1 C2 A DG 9 ? ? N3 A DG 9 ? ? C4 A DG 9 ? ? 108.79 111.90 -3.11 0.50 N 41 1 C5 A DG 9 ? ? C6 A DG 9 ? ? N1 A DG 9 ? ? 116.72 111.50 5.22 0.50 N 42 1 N3 A DG 9 ? ? C2 A DG 9 ? ? N2 A DG 9 ? ? 109.28 119.90 -10.62 0.70 N 43 1 "O5'" A DC 10 ? ? P A DC 10 ? ? OP1 A DC 10 ? ? 99.93 105.70 -5.77 0.90 N 44 1 C2 A DC 10 ? ? N3 A DC 10 ? ? C4 A DC 10 ? ? 124.69 119.90 4.79 0.50 N 45 1 N3 A DC 10 ? ? C4 A DC 10 ? ? C5 A DC 10 ? ? 117.77 121.90 -4.13 0.40 N 46 1 C5 A DC 10 ? ? C6 A DC 10 ? ? N1 A DC 10 ? ? 124.20 121.00 3.20 0.50 N 47 1 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 125.16 118.90 6.26 0.60 N 48 1 C5 A DC 10 ? ? C4 A DC 10 ? ? N4 A DC 10 ? ? 124.68 120.20 4.48 0.70 N 49 1 "O5'" B DG 11 ? ? "C5'" B DG 11 ? ? "C4'" B DG 11 ? ? 104.32 109.40 -5.08 0.80 N 50 1 C6 B DG 11 ? ? N1 B DG 11 ? ? C2 B DG 11 ? ? 119.30 125.10 -5.80 0.60 N 51 1 N1 B DG 11 ? ? C2 B DG 11 ? ? N3 B DG 11 ? ? 128.18 123.90 4.28 0.60 N 52 1 C5 B DG 11 ? ? C6 B DG 11 ? ? N1 B DG 11 ? ? 117.93 111.50 6.43 0.50 N 53 1 N3 B DG 11 ? ? C2 B DG 11 ? ? N2 B DG 11 ? ? 111.27 119.90 -8.63 0.70 N 54 1 C5 B DG 11 ? ? C6 B DG 11 ? ? O6 B DG 11 ? ? 122.61 128.60 -5.99 0.60 N 55 1 "O5'" B DC 12 ? ? P B DC 12 ? ? OP1 B DC 12 ? ? 98.92 105.70 -6.78 0.90 N 56 1 C2 B DC 12 ? ? N3 B DC 12 ? ? C4 B DC 12 ? ? 124.56 119.90 4.66 0.50 N 57 1 N3 B DC 12 ? ? C4 B DC 12 ? ? C5 B DC 12 ? ? 117.49 121.90 -4.41 0.40 N 58 1 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 125.01 118.90 6.11 0.60 N 59 1 "C3'" B DC 12 ? ? "O3'" B DC 12 ? ? P B DG 13 ? ? 127.60 119.70 7.90 1.20 Y 60 1 "O5'" B DG 13 ? ? P B DG 13 ? ? OP1 B DG 13 ? ? 97.75 105.70 -7.95 0.90 N 61 1 "O5'" B DG 13 ? ? "C5'" B DG 13 ? ? "C4'" B DG 13 ? ? 102.47 109.40 -6.93 0.80 N 62 1 C6 B DG 13 ? ? N1 B DG 13 ? ? C2 B DG 13 ? ? 120.22 125.10 -4.88 0.60 N 63 1 N1 B DG 13 ? ? C2 B DG 13 ? ? N3 B DG 13 ? ? 127.95 123.90 4.05 0.60 N 64 1 C5 B DG 13 ? ? C6 B DG 13 ? ? N1 B DG 13 ? ? 117.09 111.50 5.59 0.50 N 65 1 N1 B DG 13 ? ? C2 B DG 13 ? ? N2 B DG 13 ? ? 123.18 116.20 6.98 0.90 N 66 1 N3 B DG 13 ? ? C2 B DG 13 ? ? N2 B DG 13 ? ? 108.86 119.90 -11.04 0.70 N 67 1 C5 B DG 13 ? ? C6 B DG 13 ? ? O6 B DG 13 ? ? 123.49 128.60 -5.11 0.60 N 68 1 "O5'" B DT 14 ? ? P B DT 14 ? ? OP1 B DT 14 ? ? 99.65 105.70 -6.05 0.90 N 69 1 "O4'" B DT 14 ? ? "C4'" B DT 14 ? ? "C3'" B DT 14 ? ? 99.97 104.50 -4.53 0.40 N 70 1 "O5'" B DT 16 ? ? P B DT 16 ? ? OP1 B DT 16 ? ? 98.19 105.70 -7.51 0.90 N 71 1 N3 B DT 16 ? ? C2 B DT 16 ? ? O2 B DT 16 ? ? 118.61 122.30 -3.69 0.60 N 72 1 N3 B DT 16 ? ? C4 B DT 16 ? ? O4 B DT 16 ? ? 115.02 119.90 -4.88 0.60 N 73 1 "C3'" B DT 16 ? ? "O3'" B DT 16 ? ? P B DA 17 ? ? 128.99 119.70 9.29 1.20 Y 74 1 "O5'" B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 96.78 105.70 -8.92 0.90 N 75 1 P B DA 17 ? ? "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? 109.98 120.90 -10.92 1.60 N 76 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 103.20 108.00 -4.80 0.70 N 77 1 "O5'" B DC 18 ? ? P B DC 18 ? ? OP1 B DC 18 ? ? 99.67 105.70 -6.03 0.90 N 78 1 "C5'" B DC 18 ? ? "C4'" B DC 18 ? ? "C3'" B DC 18 ? ? 122.99 115.70 7.29 1.20 N 79 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 112.93 108.30 4.63 0.30 N 80 1 C2 B DC 18 ? ? N3 B DC 18 ? ? C4 B DC 18 ? ? 124.37 119.90 4.47 0.50 N 81 1 N3 B DC 18 ? ? C4 B DC 18 ? ? C5 B DC 18 ? ? 116.81 121.90 -5.09 0.40 N 82 1 N1 B DC 18 ? ? C2 B DC 18 ? ? O2 B DC 18 ? ? 124.74 118.90 5.84 0.60 N 83 1 C5 B DC 18 ? ? C4 B DC 18 ? ? N4 B DC 18 ? ? 127.13 120.20 6.93 0.70 N 84 1 "C3'" B DC 18 ? ? "O3'" B DC 18 ? ? P B DG 19 ? ? 130.01 119.70 10.31 1.20 Y 85 1 "O5'" B DG 19 ? ? P B DG 19 ? ? OP2 B DG 19 ? ? 95.77 105.70 -9.93 0.90 N 86 1 C6 B DG 19 ? ? N1 B DG 19 ? ? C2 B DG 19 ? ? 120.19 125.10 -4.91 0.60 N 87 1 N1 B DG 19 ? ? C2 B DG 19 ? ? N3 B DG 19 ? ? 127.96 123.90 4.06 0.60 N 88 1 C5 B DG 19 ? ? C6 B DG 19 ? ? N1 B DG 19 ? ? 117.54 111.50 6.04 0.50 N 89 1 N1 B DG 19 ? ? C2 B DG 19 ? ? N2 B DG 19 ? ? 122.18 116.20 5.98 0.90 N 90 1 N3 B DG 19 ? ? C2 B DG 19 ? ? N2 B DG 19 ? ? 109.86 119.90 -10.04 0.70 N 91 1 C5 B DG 19 ? ? C6 B DG 19 ? ? O6 B DG 19 ? ? 124.75 128.60 -3.85 0.60 N 92 1 "O5'" B DC 20 ? ? P B DC 20 ? ? OP2 B DC 20 ? ? 99.83 105.70 -5.87 0.90 N 93 1 "O5'" B DC 20 ? ? "C5'" B DC 20 ? ? "C4'" B DC 20 ? ? 100.52 109.40 -8.88 0.80 N 94 1 "O4'" B DC 20 ? ? "C4'" B DC 20 ? ? "C3'" B DC 20 ? ? 101.34 104.50 -3.16 0.40 N 95 1 N3 B DC 20 ? ? C4 B DC 20 ? ? C5 B DC 20 ? ? 118.99 121.90 -2.91 0.40 N 96 1 N1 B DC 20 ? ? C2 B DC 20 ? ? O2 B DC 20 ? ? 124.79 118.90 5.89 0.60 N 97 1 C5 B DC 20 ? ? C4 B DC 20 ? ? N4 B DC 20 ? ? 125.17 120.20 4.97 0.70 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A A2M 5 A A2M 5 ? A "2'-O-METHYL-ADENOSINE-5'-MONOPHOSPHATE" 2 B A2M 5 B A2M 15 ? A "2'-O-METHYL-ADENOSINE-5'-MONOPHOSPHATE" # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A2M P P N N 1 A2M OP1 O N N 2 A2M OP3 O N N 3 A2M "O5'" O N N 4 A2M "C5'" C N N 5 A2M "C4'" C N R 6 A2M "O4'" O N N 7 A2M "C3'" C N R 8 A2M "O3'" O N N 9 A2M "C2'" C N R 10 A2M "O2'" O N N 11 A2M "C1'" C N R 12 A2M "CM'" C N N 13 A2M N9 N Y N 14 A2M C8 C Y N 15 A2M N7 N Y N 16 A2M C5 C Y N 17 A2M C6 C Y N 18 A2M N6 N N N 19 A2M N1 N Y N 20 A2M C2 C Y N 21 A2M N3 N Y N 22 A2M C4 C Y N 23 A2M HOP3 H N N 24 A2M "H5'" H N N 25 A2M "H5''" H N N 26 A2M "H4'" H N N 27 A2M "H3'" H N N 28 A2M "HO3'" H N N 29 A2M "H2'" H N N 30 A2M "H1'" H N N 31 A2M "HM'1" H N N 32 A2M "HM'2" H N N 33 A2M "HM'3" H N N 34 A2M H8 H N N 35 A2M H61 H N N 36 A2M H62 H N N 37 A2M H2 H N N 38 A2M OP2 O N N 39 A2M HOP2 H N N 40 DA OP3 O N N 41 DA P P N N 42 DA OP1 O N N 43 DA OP2 O N N 44 DA "O5'" O N N 45 DA "C5'" C N N 46 DA "C4'" C N R 47 DA "O4'" O N N 48 DA "C3'" C N S 49 DA "O3'" O N N 50 DA "C2'" C N N 51 DA "C1'" C N R 52 DA N9 N Y N 53 DA C8 C Y N 54 DA N7 N Y N 55 DA C5 C Y N 56 DA C6 C Y N 57 DA N6 N N N 58 DA N1 N Y N 59 DA C2 C Y N 60 DA N3 N Y N 61 DA C4 C Y N 62 DA HOP3 H N N 63 DA HOP2 H N N 64 DA "H5'" H N N 65 DA "H5''" H N N 66 DA "H4'" H N N 67 DA "H3'" H N N 68 DA "HO3'" H N N 69 DA "H2'" H N N 70 DA "H2''" H N N 71 DA "H1'" H N N 72 DA H8 H N N 73 DA H61 H N N 74 DA H62 H N N 75 DA H2 H N N 76 DC OP3 O N N 77 DC P P N N 78 DC OP1 O N N 79 DC OP2 O N N 80 DC "O5'" O N N 81 DC "C5'" C N N 82 DC "C4'" C N R 83 DC "O4'" O N N 84 DC "C3'" C N S 85 DC "O3'" O N N 86 DC "C2'" C N N 87 DC "C1'" C N R 88 DC N1 N N N 89 DC C2 C N N 90 DC O2 O N N 91 DC N3 N N N 92 DC C4 C N N 93 DC N4 N N N 94 DC C5 C N N 95 DC C6 C N N 96 DC HOP3 H N N 97 DC HOP2 H N N 98 DC "H5'" H N N 99 DC "H5''" H N N 100 DC "H4'" H N N 101 DC "H3'" H N N 102 DC "HO3'" H N N 103 DC "H2'" H N N 104 DC "H2''" H N N 105 DC "H1'" H N N 106 DC H41 H N N 107 DC H42 H N N 108 DC H5 H N N 109 DC H6 H N N 110 DG OP3 O N N 111 DG P P N N 112 DG OP1 O N N 113 DG OP2 O N N 114 DG "O5'" O N N 115 DG "C5'" C N N 116 DG "C4'" C N R 117 DG "O4'" O N N 118 DG "C3'" C N S 119 DG "O3'" O N N 120 DG "C2'" C N N 121 DG "C1'" C N R 122 DG N9 N Y N 123 DG C8 C Y N 124 DG N7 N Y N 125 DG C5 C Y N 126 DG C6 C N N 127 DG O6 O N N 128 DG N1 N N N 129 DG C2 C N N 130 DG N2 N N N 131 DG N3 N N N 132 DG C4 C Y N 133 DG HOP3 H N N 134 DG HOP2 H N N 135 DG "H5'" H N N 136 DG "H5''" H N N 137 DG "H4'" H N N 138 DG "H3'" H N N 139 DG "HO3'" H N N 140 DG "H2'" H N N 141 DG "H2''" H N N 142 DG "H1'" H N N 143 DG H8 H N N 144 DG H1 H N N 145 DG H21 H N N 146 DG H22 H N N 147 DT OP3 O N N 148 DT P P N N 149 DT OP1 O N N 150 DT OP2 O N N 151 DT "O5'" O N N 152 DT "C5'" C N N 153 DT "C4'" C N R 154 DT "O4'" O N N 155 DT "C3'" C N S 156 DT "O3'" O N N 157 DT "C2'" C N N 158 DT "C1'" C N R 159 DT N1 N N N 160 DT C2 C N N 161 DT O2 O N N 162 DT N3 N N N 163 DT C4 C N N 164 DT O4 O N N 165 DT C5 C N N 166 DT C7 C N N 167 DT C6 C N N 168 DT HOP3 H N N 169 DT HOP2 H N N 170 DT "H5'" H N N 171 DT "H5''" H N N 172 DT "H4'" H N N 173 DT "H3'" H N N 174 DT "HO3'" H N N 175 DT "H2'" H N N 176 DT "H2''" H N N 177 DT "H1'" H N N 178 DT H3 H N N 179 DT H71 H N N 180 DT H72 H N N 181 DT H73 H N N 182 DT H6 H N N 183 HOH O O N N 184 HOH H1 H N N 185 HOH H2 H N N 186 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2M P OP1 doub N N 1 A2M P OP3 sing N N 2 A2M P "O5'" sing N N 3 A2M OP3 HOP3 sing N N 4 A2M "O5'" "C5'" sing N N 5 A2M "C5'" "C4'" sing N N 6 A2M "C5'" "H5'" sing N N 7 A2M "C5'" "H5''" sing N N 8 A2M "C4'" "O4'" sing N N 9 A2M "C4'" "C3'" sing N N 10 A2M "C4'" "H4'" sing N N 11 A2M "O4'" "C1'" sing N N 12 A2M "C3'" "O3'" sing N N 13 A2M "C3'" "C2'" sing N N 14 A2M "C3'" "H3'" sing N N 15 A2M "O3'" "HO3'" sing N N 16 A2M "C2'" "O2'" sing N N 17 A2M "C2'" "C1'" sing N N 18 A2M "C2'" "H2'" sing N N 19 A2M "O2'" "CM'" sing N N 20 A2M "C1'" N9 sing N N 21 A2M "C1'" "H1'" sing N N 22 A2M "CM'" "HM'1" sing N N 23 A2M "CM'" "HM'2" sing N N 24 A2M "CM'" "HM'3" sing N N 25 A2M N9 C8 sing Y N 26 A2M N9 C4 sing Y N 27 A2M C8 N7 doub Y N 28 A2M C8 H8 sing N N 29 A2M N7 C5 sing Y N 30 A2M C5 C6 sing Y N 31 A2M C5 C4 doub Y N 32 A2M C6 N6 sing N N 33 A2M C6 N1 doub Y N 34 A2M N6 H61 sing N N 35 A2M N6 H62 sing N N 36 A2M N1 C2 sing Y N 37 A2M C2 N3 doub Y N 38 A2M C2 H2 sing N N 39 A2M N3 C4 sing Y N 40 A2M P OP2 sing N N 41 A2M OP2 HOP2 sing N N 42 DA OP3 P sing N N 43 DA OP3 HOP3 sing N N 44 DA P OP1 doub N N 45 DA P OP2 sing N N 46 DA P "O5'" sing N N 47 DA OP2 HOP2 sing N N 48 DA "O5'" "C5'" sing N N 49 DA "C5'" "C4'" sing N N 50 DA "C5'" "H5'" sing N N 51 DA "C5'" "H5''" sing N N 52 DA "C4'" "O4'" sing N N 53 DA "C4'" "C3'" sing N N 54 DA "C4'" "H4'" sing N N 55 DA "O4'" "C1'" sing N N 56 DA "C3'" "O3'" sing N N 57 DA "C3'" "C2'" sing N N 58 DA "C3'" "H3'" sing N N 59 DA "O3'" "HO3'" sing N N 60 DA "C2'" "C1'" sing N N 61 DA "C2'" "H2'" sing N N 62 DA "C2'" "H2''" sing N N 63 DA "C1'" N9 sing N N 64 DA "C1'" "H1'" sing N N 65 DA N9 C8 sing Y N 66 DA N9 C4 sing Y N 67 DA C8 N7 doub Y N 68 DA C8 H8 sing N N 69 DA N7 C5 sing Y N 70 DA C5 C6 sing Y N 71 DA C5 C4 doub Y N 72 DA C6 N6 sing N N 73 DA C6 N1 doub Y N 74 DA N6 H61 sing N N 75 DA N6 H62 sing N N 76 DA N1 C2 sing Y N 77 DA C2 N3 doub Y N 78 DA C2 H2 sing N N 79 DA N3 C4 sing Y N 80 DC OP3 P sing N N 81 DC OP3 HOP3 sing N N 82 DC P OP1 doub N N 83 DC P OP2 sing N N 84 DC P "O5'" sing N N 85 DC OP2 HOP2 sing N N 86 DC "O5'" "C5'" sing N N 87 DC "C5'" "C4'" sing N N 88 DC "C5'" "H5'" sing N N 89 DC "C5'" "H5''" sing N N 90 DC "C4'" "O4'" sing N N 91 DC "C4'" "C3'" sing N N 92 DC "C4'" "H4'" sing N N 93 DC "O4'" "C1'" sing N N 94 DC "C3'" "O3'" sing N N 95 DC "C3'" "C2'" sing N N 96 DC "C3'" "H3'" sing N N 97 DC "O3'" "HO3'" sing N N 98 DC "C2'" "C1'" sing N N 99 DC "C2'" "H2'" sing N N 100 DC "C2'" "H2''" sing N N 101 DC "C1'" N1 sing N N 102 DC "C1'" "H1'" sing N N 103 DC N1 C2 sing N N 104 DC N1 C6 sing N N 105 DC C2 O2 doub N N 106 DC C2 N3 sing N N 107 DC N3 C4 doub N N 108 DC C4 N4 sing N N 109 DC C4 C5 sing N N 110 DC N4 H41 sing N N 111 DC N4 H42 sing N N 112 DC C5 C6 doub N N 113 DC C5 H5 sing N N 114 DC C6 H6 sing N N 115 DG OP3 P sing N N 116 DG OP3 HOP3 sing N N 117 DG P OP1 doub N N 118 DG P OP2 sing N N 119 DG P "O5'" sing N N 120 DG OP2 HOP2 sing N N 121 DG "O5'" "C5'" sing N N 122 DG "C5'" "C4'" sing N N 123 DG "C5'" "H5'" sing N N 124 DG "C5'" "H5''" sing N N 125 DG "C4'" "O4'" sing N N 126 DG "C4'" "C3'" sing N N 127 DG "C4'" "H4'" sing N N 128 DG "O4'" "C1'" sing N N 129 DG "C3'" "O3'" sing N N 130 DG "C3'" "C2'" sing N N 131 DG "C3'" "H3'" sing N N 132 DG "O3'" "HO3'" sing N N 133 DG "C2'" "C1'" sing N N 134 DG "C2'" "H2'" sing N N 135 DG "C2'" "H2''" sing N N 136 DG "C1'" N9 sing N N 137 DG "C1'" "H1'" sing N N 138 DG N9 C8 sing Y N 139 DG N9 C4 sing Y N 140 DG C8 N7 doub Y N 141 DG C8 H8 sing N N 142 DG N7 C5 sing Y N 143 DG C5 C6 sing N N 144 DG C5 C4 doub Y N 145 DG C6 O6 doub N N 146 DG C6 N1 sing N N 147 DG N1 C2 sing N N 148 DG N1 H1 sing N N 149 DG C2 N2 sing N N 150 DG C2 N3 doub N N 151 DG N2 H21 sing N N 152 DG N2 H22 sing N N 153 DG N3 C4 sing N N 154 DT OP3 P sing N N 155 DT OP3 HOP3 sing N N 156 DT P OP1 doub N N 157 DT P OP2 sing N N 158 DT P "O5'" sing N N 159 DT OP2 HOP2 sing N N 160 DT "O5'" "C5'" sing N N 161 DT "C5'" "C4'" sing N N 162 DT "C5'" "H5'" sing N N 163 DT "C5'" "H5''" sing N N 164 DT "C4'" "O4'" sing N N 165 DT "C4'" "C3'" sing N N 166 DT "C4'" "H4'" sing N N 167 DT "O4'" "C1'" sing N N 168 DT "C3'" "O3'" sing N N 169 DT "C3'" "C2'" sing N N 170 DT "C3'" "H3'" sing N N 171 DT "O3'" "HO3'" sing N N 172 DT "C2'" "C1'" sing N N 173 DT "C2'" "H2'" sing N N 174 DT "C2'" "H2''" sing N N 175 DT "C1'" N1 sing N N 176 DT "C1'" "H1'" sing N N 177 DT N1 C2 sing N N 178 DT N1 C6 sing N N 179 DT C2 O2 doub N N 180 DT C2 N3 sing N N 181 DT N3 C4 sing N N 182 DT N3 H3 sing N N 183 DT C4 O4 doub N N 184 DT C4 C5 sing N N 185 DT C5 C7 sing N N 186 DT C5 C6 doub N N 187 DT C7 H71 sing N N 188 DT C7 H72 sing N N 189 DT C7 H73 sing N N 190 DT C6 H6 sing N N 191 HOH O H1 sing N N 192 HOH O H2 sing N N 193 # _ndb_struct_conf_na.entry_id 168D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.472 -0.250 0.129 0.654 -2.943 -1.608 1 A_DG1:DC20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.107 0.008 -0.092 10.693 -13.014 2.693 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.497 -0.048 0.044 -8.249 -16.163 1.334 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DT 4 1_555 B DA 7 1_555 -0.530 -0.219 -0.118 -5.044 -14.762 5.174 4 A_DT4:DA17_B A 4 ? B 17 ? 20 1 1 A A2M 5 1_555 B DT 6 1_555 -0.230 -0.051 0.094 -2.023 -15.161 2.756 5 A_A2M5:DT16_B A 5 ? B 16 ? 20 1 1 A DT 6 1_555 B A2M 5 1_555 -0.245 -0.023 0.182 5.957 -10.759 2.184 6 A_DT6:A2M15_B A 6 ? B 15 ? 20 1 1 A DA 7 1_555 B DT 4 1_555 -0.132 -0.181 -0.114 6.294 -12.321 4.228 7 A_DA7:DT14_B A 7 ? B 14 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.318 -0.088 -0.079 12.068 -15.036 0.953 8 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.054 -0.097 0.230 -2.604 -7.150 -0.682 9 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DC 10 1_555 B DG 1 1_555 0.338 -0.113 0.108 2.205 6.118 -1.133 10 A_DC10:DG11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DC 2 1_555 B DG 9 1_555 0.474 -1.260 3.160 2.689 0.857 34.512 -2.244 -0.396 3.155 1.442 -4.523 34.624 1 AA_DG1DC2:DG19DC20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.117 -1.877 3.717 -2.857 11.059 31.035 -5.260 -0.300 2.896 19.845 5.126 33.022 2 AA_DC2DG3:DC18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DT 4 1_555 B DA 7 1_555 -0.924 -1.431 3.177 -0.170 4.088 30.818 -3.411 1.694 2.972 7.650 0.318 31.081 3 AA_DG3DT4:DA17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DT 4 1_555 B DA 7 1_555 A A2M 5 1_555 B DT 6 1_555 0.945 -1.273 3.288 1.020 16.797 28.749 -4.794 -1.496 2.253 30.731 -1.866 33.222 4 AA_DT4A2M5:DT16DA17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A A2M 5 1_555 B DT 6 1_555 A DT 6 1_555 B A2M 5 1_555 -0.226 -1.324 3.304 -0.218 11.418 30.474 -4.248 0.368 2.650 20.827 0.398 32.496 5 AA_A2M5DT6:A2M15DT16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DT 6 1_555 B A2M 5 1_555 A DA 7 1_555 B DT 4 1_555 0.099 -1.408 3.278 1.066 13.144 30.210 -4.548 -0.008 2.470 23.842 -1.934 32.901 6 AA_DT6DA7:DT14A2M15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DA 7 1_555 B DT 4 1_555 A DC 8 1_555 B DG 3 1_555 0.297 -1.617 3.322 0.772 4.975 29.933 -4.067 -0.416 3.026 9.546 -1.481 30.344 7 AA_DA7DC8:DG13DT14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.280 -1.983 3.564 -2.663 12.423 32.361 -5.204 0.066 2.660 21.294 4.565 34.704 8 AA_DC8DG9:DC12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DC 10 1_555 B DG 1 1_555 -0.015 -1.847 3.344 1.299 2.614 32.586 -3.732 0.251 3.187 4.646 -2.309 32.713 9 AA_DG9DC10:DG11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 168D _atom_sites.fract_transf_matrix[1][1] 0.039793 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021906 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021029 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_