data_173D # _entry.id 173D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 173D pdb_0000173d 10.2210/pdb173d/pdb RCSB DDH048 ? ? WWPDB D_1000170164 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-10-15 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-02-15 6 'Structure model' 1 5 2012-12-12 7 'Structure model' 1 6 2017-11-01 8 'Structure model' 2 0 2023-11-15 9 'Structure model' 3 0 2024-07-10 10 'Structure model' 3 1 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' Other 10 7 'Structure model' Advisory 11 7 'Structure model' 'Derived calculations' 12 8 'Structure model' 'Atomic model' 13 8 'Structure model' 'Data collection' 14 8 'Structure model' 'Database references' 15 8 'Structure model' 'Derived calculations' 16 9 'Structure model' 'Data collection' 17 9 'Structure model' 'Derived calculations' 18 9 'Structure model' 'Non-polymer description' 19 9 'Structure model' 'Structure summary' 20 10 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 7 'Structure model' pdbx_struct_assembly 2 7 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 8 'Structure model' atom_site 4 8 'Structure model' chem_comp_atom 5 8 'Structure model' chem_comp_bond 6 8 'Structure model' database_2 7 8 'Structure model' pdbx_validate_torsion 8 8 'Structure model' struct_conn 9 9 'Structure model' chem_comp 10 9 'Structure model' chem_comp_atom 11 9 'Structure model' chem_comp_bond 12 9 'Structure model' entity 13 9 'Structure model' struct_conn 14 10 'Structure model' pdbx_entry_details 15 10 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 7 'Structure model' '_pdbx_struct_assembly.method_details' 2 8 'Structure model' '_atom_site.auth_atom_id' 3 8 'Structure model' '_atom_site.label_atom_id' 4 8 'Structure model' '_database_2.pdbx_DOI' 5 8 'Structure model' '_database_2.pdbx_database_accession' 6 8 'Structure model' '_struct_conn.pdbx_dist_value' 7 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 8 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 8 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 8 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 8 'Structure model' '_struct_conn.ptnr1_label_comp_id' 12 8 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 8 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 8 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 8 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 8 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 8 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 8 'Structure model' '_struct_conn.ptnr2_symmetry' 19 9 'Structure model' '_chem_comp.formula' 20 9 'Structure model' '_chem_comp.formula_weight' 21 9 'Structure model' '_entity.formula_weight' 22 9 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 10 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 173D _pdbx_database_status.recvd_initial_deposition_date 1994-04-18 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1A7Z unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN Z3' PDB 209D unspecified 'CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2' PDB 1UNM unspecified 'CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA' PDB 1I3W unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2' PDB 1A7Y unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D' PDB 1FJA unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2' PDB 2D55 unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSC unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1L1V unspecified 'SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)' PDB 316D unspecified 'CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSD unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2' PDB 1MNV unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2' PDB 1UNJ unspecified 'CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2' PDB 1OVF unspecified 'SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2' PDB 1QFI unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN X2' PDB 172D unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kamitori, S.' 1 'Takusagawa, F.' 2 # _citation.id primary _citation.title ;Multiple Binding Modes of Anticancer Drug Actinomycin D: X-Ray, Molecular Modeling, and Spectroscopic Studies of D(Gaagcttc)2-Actinomycin D Complexes and its Host DNA ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 116 _citation.page_first 4154 _citation.page_last ? _citation.year 1994 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI 10.1021/JA00089A002 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kamitori, S.' 1 ? primary 'Takusagawa, F.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3') ; 2426.617 2 ? ? ? ? 2 polymer nat 'ACTINOMYCIN D' 1291.446 2 ? ? ? ? 3 water nat water 18.015 96 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name DACTINOMYCIN # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DA)(DA)(DG)(DC)(DT)(DT)(DC)' GAAGCTTC A,B ? 2 'polypeptide(L)' no yes 'T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)' TVPGVXTVPGV C,D ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DA n 1 4 DG n 1 5 DC n 1 6 DT n 1 7 DT n 1 8 DC n 2 1 THR n 2 2 DVA n 2 3 PRO n 2 4 SAR n 2 5 MVA n 2 6 PXZ n 2 7 THR n 2 8 DVA n 2 9 PRO n 2 10 SAR n 2 11 MVA n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'STREPTOMYCES ANTIBIOTICUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 1890 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 HOH non-polymer . WATER ? 'H2 O' 18.015 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O6' 328.276 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DC 8 8 8 DC DC A . n B 1 1 DG 1 9 9 DG DG B . n B 1 2 DA 2 10 10 DA DA B . n B 1 3 DA 3 11 11 DA DA B . n B 1 4 DG 4 12 12 DG DG B . n B 1 5 DC 5 13 13 DC DC B . n B 1 6 DT 6 14 14 DT DT B . n B 1 7 DT 7 15 15 DT DT B . n B 1 8 DC 8 16 16 DC DC B . n C 2 1 THR 1 1 1 THR THR C . n C 2 2 DVA 2 2 2 DVA DVA C . n C 2 3 PRO 3 3 3 PRO PRO C . n C 2 4 SAR 4 4 4 SAR SAR C . n C 2 5 MVA 5 5 5 MVA MVA C . n C 2 6 PXZ 6 6 6 PXZ PXZ C . n C 2 7 THR 7 7 ? ? ? C . n C 2 8 DVA 8 8 ? ? ? C . n C 2 9 PRO 9 9 ? ? ? C . n C 2 10 SAR 10 10 ? ? ? C . n C 2 11 MVA 11 11 ? ? ? C . n D 2 1 THR 1 1 ? ? ? D . n D 2 2 DVA 2 2 ? ? ? D . n D 2 3 PRO 3 3 ? ? ? D . n D 2 4 SAR 4 4 ? ? ? D . n D 2 5 MVA 5 5 ? ? ? D . n D 2 6 PXZ 6 6 6 PXZ PXZ D . n D 2 7 THR 7 7 7 THR THR D . n D 2 8 DVA 8 8 8 DVA DVA D . n D 2 9 PRO 9 9 9 PRO PRO D . n D 2 10 SAR 10 10 10 SAR SAR D . n D 2 11 MVA 11 11 11 MVA MVA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 2001 2001 HOH HOH A . E 3 HOH 2 2002 2002 HOH HOH A . E 3 HOH 3 2003 2003 HOH HOH A . E 3 HOH 4 2004 2004 HOH HOH A . E 3 HOH 5 2005 2005 HOH HOH A . E 3 HOH 6 2006 2006 HOH HOH A . E 3 HOH 7 2007 2007 HOH HOH A . E 3 HOH 8 2008 2008 HOH HOH A . E 3 HOH 9 2009 2009 HOH HOH A . E 3 HOH 10 2010 2010 HOH HOH A . E 3 HOH 11 2011 2011 HOH HOH A . E 3 HOH 12 2012 2012 HOH HOH A . E 3 HOH 13 2013 2013 HOH HOH A . E 3 HOH 14 2014 2014 HOH HOH A . E 3 HOH 15 2015 2015 HOH HOH A . E 3 HOH 16 2016 2016 HOH HOH A . E 3 HOH 17 2017 2017 HOH HOH A . E 3 HOH 18 2018 2018 HOH HOH A . E 3 HOH 19 2019 2019 HOH HOH A . E 3 HOH 20 2020 2020 HOH HOH A . E 3 HOH 21 2021 2021 HOH HOH A . E 3 HOH 22 2022 2022 HOH HOH A . E 3 HOH 23 2023 2023 HOH HOH A . E 3 HOH 24 2024 2024 HOH HOH A . E 3 HOH 25 2025 2025 HOH HOH A . E 3 HOH 26 2026 2026 HOH HOH A . E 3 HOH 27 2027 2027 HOH HOH A . E 3 HOH 28 2028 2028 HOH HOH A . E 3 HOH 29 2029 2029 HOH HOH A . E 3 HOH 30 2030 2030 HOH HOH A . E 3 HOH 31 2031 2031 HOH HOH A . E 3 HOH 32 2032 2032 HOH HOH A . E 3 HOH 33 2033 2033 HOH HOH A . E 3 HOH 34 2034 2034 HOH HOH A . E 3 HOH 35 2035 2035 HOH HOH A . E 3 HOH 36 2036 2036 HOH HOH A . E 3 HOH 37 2037 2037 HOH HOH A . E 3 HOH 38 2038 2038 HOH HOH A . E 3 HOH 39 2039 2039 HOH HOH A . E 3 HOH 40 2040 2040 HOH HOH A . E 3 HOH 41 2041 2041 HOH HOH A . E 3 HOH 42 2042 2042 HOH HOH A . E 3 HOH 43 2043 2043 HOH HOH A . E 3 HOH 44 2044 2044 HOH HOH A . E 3 HOH 45 2045 2045 HOH HOH A . E 3 HOH 46 2046 2046 HOH HOH A . F 3 HOH 1 2001 2001 HOH HOH B . F 3 HOH 2 2002 2002 HOH HOH B . F 3 HOH 3 2003 2003 HOH HOH B . F 3 HOH 4 2004 2004 HOH HOH B . F 3 HOH 5 2005 2005 HOH HOH B . F 3 HOH 6 2006 2006 HOH HOH B . F 3 HOH 7 2007 2007 HOH HOH B . F 3 HOH 8 2008 2008 HOH HOH B . F 3 HOH 9 2009 2009 HOH HOH B . F 3 HOH 10 2010 2010 HOH HOH B . F 3 HOH 11 2011 2011 HOH HOH B . F 3 HOH 12 2012 2012 HOH HOH B . F 3 HOH 13 2013 2013 HOH HOH B . F 3 HOH 14 2014 2014 HOH HOH B . F 3 HOH 15 2015 2015 HOH HOH B . F 3 HOH 16 2016 2016 HOH HOH B . F 3 HOH 17 2017 2017 HOH HOH B . F 3 HOH 18 2018 2018 HOH HOH B . F 3 HOH 19 2019 2019 HOH HOH B . F 3 HOH 20 2020 2020 HOH HOH B . F 3 HOH 21 2021 2021 HOH HOH B . F 3 HOH 22 2022 2022 HOH HOH B . F 3 HOH 23 2023 2023 HOH HOH B . F 3 HOH 24 2024 2024 HOH HOH B . F 3 HOH 25 2025 2025 HOH HOH B . F 3 HOH 26 2026 2026 HOH HOH B . F 3 HOH 27 2027 2027 HOH HOH B . F 3 HOH 28 2028 2028 HOH HOH B . F 3 HOH 29 2029 2029 HOH HOH B . F 3 HOH 30 2030 2030 HOH HOH B . F 3 HOH 31 2031 2031 HOH HOH B . F 3 HOH 32 2032 2032 HOH HOH B . F 3 HOH 33 2033 2033 HOH HOH B . G 3 HOH 1 2001 2001 HOH HOH C . G 3 HOH 2 2002 2002 HOH HOH C . G 3 HOH 3 2003 2003 HOH HOH C . G 3 HOH 4 2004 2004 HOH HOH C . G 3 HOH 5 2005 2005 HOH HOH C . G 3 HOH 6 2006 2006 HOH HOH C . G 3 HOH 7 2007 2007 HOH HOH C . H 3 HOH 1 2001 2001 HOH HOH D . H 3 HOH 2 2002 2002 HOH HOH D . H 3 HOH 3 2003 2003 HOH HOH D . H 3 HOH 4 2004 2004 HOH HOH D . H 3 HOH 5 2005 2005 HOH HOH D . H 3 HOH 6 2006 2006 HOH HOH D . H 3 HOH 7 2007 2007 HOH HOH D . H 3 HOH 8 2008 2008 HOH HOH D . H 3 HOH 9 2009 2009 HOH HOH D . H 3 HOH 10 2010 2010 HOH HOH D . # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 173D _cell.length_a 69.900 _cell.length_b 61.410 _cell.length_c 54.250 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 173D _symmetry.space_group_name_H-M 'F 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? # _exptl.entry_id 173D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.88 _exptl_crystal.density_percent_sol 57.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PH 7.00, VAPOR DIFFUSION, TEMPERATURE 277.00K' # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 'NA CACODYLATE' ? ? ? 1 5 1 SPERMINE_HCL ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 123.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 173D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 3.000 _reflns.number_obs 1016 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 173D _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 1016 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.202 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 94 _refine_hist.pdbx_number_atoms_nucleic_acid 322 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 96 _refine_hist.number_atoms_total 512 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.037 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 5.90 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 173D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 173D _struct.title ;MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 173D _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC _struct_keywords.text 'ACTINOMYCIN, ANTIBIOTIC, ANTITUMOR, ANTICANCER, CHROMOPHORE, DEPSIPEPTIDE, DNA-ANTIBIOTIC COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 173D 1 ? ? 173D ? 2 NOR NOR00228 2 ? ? NOR00228 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 173D A 1 ? 8 ? 173D 1 ? 8 ? 1 8 2 1 173D B 1 ? 8 ? 173D 9 ? 16 ? 9 16 3 2 173D C 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 4 2 173D D 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2990 ? 1 MORE -15 ? 1 'SSA (A^2)' 3060 ? 2 'ABSA (A^2)' 3110 ? 2 MORE -11 ? 2 'SSA (A^2)' 2810 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 B,D,F,H 2 1,3 A,C,E,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 14_555 -x+1/2,-y+1/2,z -1.0000000000 0.0000000000 0.0000000000 34.9500000000 0.0000000000 -1.0000000000 0.0000000000 30.7050000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C THR 1 C ? ? ? 1_555 C DVA 2 N ? ? C THR 1 C DVA 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale one ? C THR 1 OG1 ? ? ? 1_555 C MVA 5 C ? ? C THR 1 C MVA 5 1_555 ? ? ? ? ? ? ? 1.400 ? ? covale3 covale both ? C THR 1 N ? ? ? 1_555 C PXZ 6 C0 ? ? C THR 1 C PXZ 6 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale4 covale both ? C DVA 2 C ? ? ? 1_555 C PRO 3 N ? ? C DVA 2 C PRO 3 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale5 covale both ? C PRO 3 C ? ? ? 1_555 C SAR 4 N ? ? C PRO 3 C SAR 4 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale6 covale both ? C SAR 4 C ? ? ? 1_555 C MVA 5 N ? ? C SAR 4 C MVA 5 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale7 covale none ? C PXZ 6 N10 ? ? ? 1_555 C PXZ 6 C11 ? ? C PXZ 6 C PXZ 6 2_555 ? ? ? ? ? ? ? 1.310 ? ? covale8 covale none ? C PXZ 6 O5 ? ? ? 1_555 C PXZ 6 C12 ? ? C PXZ 6 C PXZ 6 2_555 ? ? ? ? ? ? ? 1.276 ? ? covale9 covale none ? D PXZ 6 N10 ? ? ? 1_555 D PXZ 6 C11 ? ? D PXZ 6 D PXZ 6 14_555 ? ? ? ? ? ? ? 1.425 ? ? covale10 covale none ? D PXZ 6 O5 ? ? ? 1_555 D PXZ 6 C12 ? ? D PXZ 6 D PXZ 6 14_555 ? ? ? ? ? ? ? 1.435 ? ? covale11 covale both ? D PXZ 6 C0 ? ? ? 1_555 D THR 7 N ? ? D PXZ 6 D THR 7 1_555 ? ? ? ? ? ? ? 1.366 ? ? covale12 covale both ? D THR 7 C ? ? ? 1_555 D DVA 8 N ? ? D THR 7 D DVA 8 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale13 covale one ? D THR 7 OG1 ? ? ? 1_555 D MVA 11 C ? ? D THR 7 D MVA 11 1_555 ? ? ? ? ? ? ? 1.394 ? ? covale14 covale both ? D DVA 8 C ? ? ? 1_555 D PRO 9 N ? ? D DVA 8 D PRO 9 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale15 covale both ? D PRO 9 C ? ? ? 1_555 D SAR 10 N ? ? D PRO 9 D SAR 10 1_555 ? ? ? ? ? ? ? 1.365 ? ? covale16 covale both ? D SAR 10 C ? ? ? 1_555 D MVA 11 N ? ? D SAR 10 D MVA 11 1_555 ? ? ? ? ? ? ? 1.365 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 SAR C 4 ? . . . . SAR C 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 2 MVA C 5 ? . . . . MVA C 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 3 SAR D 10 ? . . . . SAR D 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 4 MVA D 11 ? . . . . MVA D 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 5 PXZ D 6 ? . . . . PXZ D 6 ? 1_555 . . . . . . . ? 1 PXZ None 'Non-standard residue' 6 THR C 1 ? MVA C 5 ? THR C 1 ? 1_555 MVA C 5 ? 1_555 OG1 C . . . None 'Non-standard linkage' 7 THR C 1 ? PXZ C 6 ? THR C 1 ? 1_555 PXZ C 6 ? 1_555 N C0 . . . None 'Non-standard linkage' 8 PXZ C 6 ? PXZ C 6 ? PXZ C 6 ? 1_555 PXZ C 6 ? 2_555 N10 C11 . . . None 'Non-standard linkage' 9 PXZ C 6 ? PXZ C 6 ? PXZ C 6 ? 1_555 PXZ C 6 ? 2_555 O5 C12 . . . None 'Non-standard linkage' 10 PXZ D 6 ? PXZ D 6 ? PXZ D 6 ? 1_555 PXZ D 6 ? 14_555 N10 C11 . . . None 'Non-standard linkage' 11 PXZ D 6 ? PXZ D 6 ? PXZ D 6 ? 1_555 PXZ D 6 ? 14_555 O5 C12 . . . None 'Non-standard linkage' 12 THR D 7 ? MVA D 11 ? THR D 7 ? 1_555 MVA D 11 ? 1_555 OG1 C . . . None 'Non-standard linkage' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 DVA 2 C . ? DVA 2 C PRO 3 C ? PRO 3 C 1 -4.23 2 PRO 3 C . ? PRO 3 C SAR 4 C ? SAR 4 C 1 3.45 3 DVA 8 D . ? DVA 8 D PRO 9 D ? PRO 9 D 1 -16.94 4 PRO 9 D . ? PRO 9 D SAR 10 D ? SAR 10 D 1 3.51 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR CHAIN C OF ACTINOMYCIN D' AC2 Software ? ? ? ? 9 'BINDING SITE FOR CHAIN D OF ACTINOMYCIN D' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 4 ? DG A 4 . ? 1_555 ? 2 AC1 9 DG A 4 ? DG A 4 . ? 2_555 ? 3 AC1 9 DC A 5 ? DC A 5 . ? 2_555 ? 4 AC1 9 DC A 5 ? DC A 5 . ? 1_555 ? 5 AC1 9 DT A 6 ? DT A 6 . ? 2_555 ? 6 AC1 9 DA B 3 ? DA B 11 . ? 3_555 ? 7 AC1 9 HOH G . ? HOH C 2004 . ? 1_555 ? 8 AC1 9 HOH G . ? HOH C 2005 . ? 1_555 ? 9 AC1 9 HOH G . ? HOH C 2006 . ? 1_555 ? 10 AC2 9 DG B 4 ? DG B 12 . ? 1_555 ? 11 AC2 9 DG B 4 ? DG B 12 . ? 14_555 ? 12 AC2 9 DC B 5 ? DC B 13 . ? 1_555 ? 13 AC2 9 DC B 5 ? DC B 13 . ? 14_555 ? 14 AC2 9 DT B 6 ? DT B 14 . ? 14_555 ? 15 AC2 9 DT B 7 ? DT B 15 . ? 14_555 ? 16 AC2 9 HOH F . ? HOH B 2025 . ? 1_555 ? 17 AC2 9 HOH H . ? HOH D 2005 . ? 1_555 ? 18 AC2 9 HOH H . ? HOH D 2009 . ? 1_555 ? # _pdbx_entry_details.entry_id 173D _pdbx_entry_details.compound_details ;ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 C11 _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 PXZ _pdbx_validate_symm_contact.auth_seq_id_1 6 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 C11 _pdbx_validate_symm_contact.auth_asym_id_2 C _pdbx_validate_symm_contact.auth_comp_id_2 PXZ _pdbx_validate_symm_contact.auth_seq_id_2 6 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A DG 1 ? ? "C1'" A DG 1 ? ? 1.449 1.518 -0.069 0.010 N 2 1 "C5'" A DA 2 ? ? "C4'" A DA 2 ? ? 1.569 1.512 0.057 0.007 N 3 1 N9 A DA 2 ? ? C4 A DA 2 ? ? 1.416 1.374 0.042 0.006 N 4 1 "C4'" A DA 3 ? ? "C3'" A DA 3 ? ? 1.459 1.521 -0.062 0.010 N 5 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 1.423 1.516 -0.093 0.008 N 6 1 "O3'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.561 1.435 0.126 0.013 N 7 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.671 1.593 0.078 0.010 N 8 1 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.587 1.512 0.075 0.007 N 9 1 "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 1.593 1.529 0.064 0.010 N 10 1 "C5'" B DG 9 ? ? "C4'" B DG 9 ? ? 1.567 1.512 0.055 0.007 N 11 1 "O3'" B DG 9 ? ? P B DA 10 ? ? 1.711 1.607 0.104 0.012 Y 12 1 C6 B DA 10 ? ? N1 B DA 10 ? ? 1.308 1.351 -0.043 0.007 N 13 1 "O4'" B DA 11 ? ? "C1'" B DA 11 ? ? 1.496 1.420 0.076 0.011 N 14 1 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 1.443 1.521 -0.078 0.010 N 15 1 "O3'" B DG 12 ? ? "C3'" B DG 12 ? ? 1.553 1.435 0.118 0.013 N 16 1 C2 B DG 12 ? ? N3 B DG 12 ? ? 1.380 1.323 0.057 0.008 N 17 1 C5 B DG 12 ? ? C6 B DG 12 ? ? 1.333 1.419 -0.086 0.010 N 18 1 C5 B DG 12 ? ? N7 B DG 12 ? ? 1.340 1.388 -0.048 0.006 N 19 1 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.238 1.305 -0.067 0.006 N 20 1 P B DC 13 ? ? "O5'" B DC 13 ? ? 1.735 1.593 0.142 0.010 N 21 1 "C2'" B DC 13 ? ? "C1'" B DC 13 ? ? 1.588 1.519 0.069 0.010 N 22 1 P B DT 14 ? ? "O5'" B DT 14 ? ? 1.710 1.593 0.117 0.010 N 23 1 "C5'" B DT 14 ? ? "C4'" B DT 14 ? ? 1.557 1.512 0.045 0.007 N 24 1 P B DC 16 ? ? "O5'" B DC 16 ? ? 1.695 1.593 0.102 0.010 N 25 1 "C5'" B DC 16 ? ? "C4'" B DC 16 ? ? 1.599 1.512 0.087 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" A DG 1 ? ? "C4'" A DG 1 ? ? "O4'" A DG 1 ? ? 117.82 109.80 8.02 1.10 N 2 1 "C2'" A DG 1 ? ? "C3'" A DG 1 ? ? "O3'" A DG 1 ? ? 92.28 109.40 -17.12 2.50 N 3 1 "C4'" A DG 1 ? ? "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? 94.61 102.20 -7.59 0.70 N 4 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 115.78 108.30 7.48 0.30 N 5 1 N1 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 125.62 119.90 5.72 0.60 N 6 1 C5 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 123.82 128.60 -4.78 0.60 N 7 1 "C3'" A DG 1 ? ? "O3'" A DG 1 ? ? P A DA 2 ? ? 138.30 119.70 18.60 1.20 Y 8 1 "O3'" A DG 1 ? ? P A DA 2 ? ? "O5'" A DA 2 ? ? 89.76 104.00 -14.24 1.90 Y 9 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 117.96 108.30 9.66 0.30 N 10 1 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 120.89 117.70 3.19 0.50 N 11 1 "O4'" A DA 3 ? ? "C4'" A DA 3 ? ? "C3'" A DA 3 ? ? 90.56 104.50 -13.94 0.40 N 12 1 "C1'" A DA 3 ? ? "O4'" A DA 3 ? ? "C4'" A DA 3 ? ? 103.73 110.10 -6.37 1.00 N 13 1 N9 A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 130.17 114.30 15.87 1.40 N 14 1 C6 A DA 3 ? ? N1 A DA 3 ? ? C2 A DA 3 ? ? 122.46 118.60 3.86 0.60 N 15 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 96.13 104.50 -8.37 0.40 N 16 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.70 114.10 -12.40 1.80 N 17 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "O4'" A DG 4 ? ? 118.38 109.80 8.58 1.10 N 18 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? 129.86 112.30 17.56 2.00 N 19 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 109.07 103.10 5.97 0.90 N 20 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? "C1'" A DG 4 ? ? 95.35 102.40 -7.05 0.80 N 21 1 N9 A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 123.46 114.30 9.16 1.40 N 22 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 117.71 108.30 9.41 0.30 N 23 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DC 5 ? ? 132.20 119.70 12.50 1.20 Y 24 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 98.98 104.50 -5.52 0.40 N 25 1 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? 96.14 102.20 -6.06 0.70 N 26 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 100.49 105.90 -5.41 0.80 N 27 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 120.03 108.30 11.73 0.30 N 28 1 "O4'" A DT 6 ? ? "C4'" A DT 6 ? ? "C3'" A DT 6 ? ? 100.56 104.50 -3.94 0.40 N 29 1 "C5'" A DT 6 ? ? "C4'" A DT 6 ? ? "C3'" A DT 6 ? ? 123.98 115.70 8.28 1.20 N 30 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 119.32 108.30 11.02 0.30 N 31 1 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 118.35 122.30 -3.95 0.60 N 32 1 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 118.35 122.90 -4.55 0.60 N 33 1 "C4'" A DT 7 ? ? "C3'" A DT 7 ? ? "C2'" A DT 7 ? ? 97.75 102.20 -4.45 0.70 N 34 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 93.56 105.90 -12.34 0.80 N 35 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 119.17 108.30 10.87 0.30 N 36 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 122.95 127.20 -4.25 0.60 N 37 1 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 122.15 118.00 4.15 0.60 N 38 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.32 122.90 -6.58 0.60 N 39 1 "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? "O4'" A DC 8 ? ? 96.95 109.30 -12.35 1.90 N 40 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 122.69 108.30 14.39 0.30 N 41 1 C2 A DC 8 ? ? N1 A DC 8 ? ? "C1'" A DC 8 ? ? 112.15 118.80 -6.65 1.10 N 42 1 N9 B DG 9 ? ? "C1'" B DG 9 ? ? "C2'" B DG 9 ? ? 124.08 114.30 9.78 1.40 N 43 1 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 118.64 108.30 10.34 0.30 N 44 1 C4 B DG 9 ? ? C5 B DG 9 ? ? N7 B DG 9 ? ? 106.73 110.80 -4.07 0.40 N 45 1 C8 B DG 9 ? ? N9 B DG 9 ? ? C4 B DG 9 ? ? 102.26 106.40 -4.14 0.40 N 46 1 N9 B DG 9 ? ? C4 B DG 9 ? ? C5 B DG 9 ? ? 110.71 105.40 5.31 0.40 N 47 1 N1 B DG 9 ? ? C6 B DG 9 ? ? O6 B DG 9 ? ? 112.98 119.90 -6.92 0.60 N 48 1 C5 B DG 9 ? ? C6 B DG 9 ? ? O6 B DG 9 ? ? 135.53 128.60 6.93 0.60 N 49 1 "C3'" B DG 9 ? ? "O3'" B DG 9 ? ? P B DA 10 ? ? 127.24 119.70 7.54 1.20 Y 50 1 "O5'" B DA 10 ? ? "C5'" B DA 10 ? ? "C4'" B DA 10 ? ? 104.40 109.40 -5.00 0.80 N 51 1 "O4'" B DA 10 ? ? "C4'" B DA 10 ? ? "C3'" B DA 10 ? ? 97.65 104.50 -6.85 0.40 N 52 1 "C5'" B DA 10 ? ? "C4'" B DA 10 ? ? "O4'" B DA 10 ? ? 96.23 109.30 -13.07 1.90 N 53 1 C6 B DA 10 ? ? N1 B DA 10 ? ? C2 B DA 10 ? ? 123.65 118.60 5.05 0.60 N 54 1 N1 B DA 10 ? ? C2 B DA 10 ? ? N3 B DA 10 ? ? 125.06 129.30 -4.24 0.50 N 55 1 N9 B DA 10 ? ? C4 B DA 10 ? ? C5 B DA 10 ? ? 108.46 105.80 2.66 0.40 N 56 1 N1 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 114.12 118.60 -4.48 0.60 N 57 1 C5 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 129.04 123.70 5.34 0.80 N 58 1 "O4'" B DA 11 ? ? "C4'" B DA 11 ? ? "C3'" B DA 11 ? ? 91.92 104.50 -12.58 0.40 N 59 1 "C4'" B DA 11 ? ? "C3'" B DA 11 ? ? "O3'" B DA 11 ? ? 127.29 112.30 14.99 2.00 N 60 1 "O4'" B DA 11 ? ? "C1'" B DA 11 ? ? "C2'" B DA 11 ? ? 97.85 105.90 -8.05 0.80 N 61 1 "O4'" B DA 11 ? ? "C1'" B DA 11 ? ? N9 B DA 11 ? ? 118.89 108.30 10.59 0.30 N 62 1 C6 B DA 11 ? ? N1 B DA 11 ? ? C2 B DA 11 ? ? 123.50 118.60 4.90 0.60 N 63 1 C5 B DA 11 ? ? C6 B DA 11 ? ? N1 B DA 11 ? ? 113.40 117.70 -4.30 0.50 N 64 1 "C3'" B DA 11 ? ? "O3'" B DA 11 ? ? P B DG 12 ? ? 133.12 119.70 13.42 1.20 Y 65 1 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 111.24 106.00 5.24 0.60 N 66 1 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 102.77 114.10 -11.33 1.80 N 67 1 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? "O4'" B DG 12 ? ? 118.20 109.80 8.40 1.10 N 68 1 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 95.85 102.20 -6.35 0.70 N 69 1 "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 113.39 102.50 10.89 1.20 N 70 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 96.22 105.90 -9.68 0.80 N 71 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 114.95 108.30 6.65 0.30 N 72 1 C2 B DG 12 ? ? N3 B DG 12 ? ? C4 B DG 12 ? ? 107.80 111.90 -4.10 0.50 N 73 1 C4 B DG 12 ? ? C5 B DG 12 ? ? C6 B DG 12 ? ? 123.76 118.80 4.96 0.60 N 74 1 C4 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 116.73 110.80 5.93 0.40 N 75 1 C5 B DG 12 ? ? N7 B DG 12 ? ? C8 B DG 12 ? ? 98.48 104.30 -5.82 0.50 N 76 1 N7 B DG 12 ? ? C8 B DG 12 ? ? N9 B DG 12 ? ? 121.21 113.10 8.11 0.50 N 77 1 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 103.16 106.40 -3.24 0.40 N 78 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 100.40 105.40 -5.00 0.40 N 79 1 N3 B DG 12 ? ? C4 B DG 12 ? ? N9 B DG 12 ? ? 133.37 126.00 7.37 0.60 N 80 1 C6 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 119.50 130.40 -10.90 0.60 N 81 1 N1 B DG 12 ? ? C2 B DG 12 ? ? N2 B DG 12 ? ? 110.17 116.20 -6.03 0.90 N 82 1 N1 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 129.17 119.90 9.27 0.60 N 83 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 117.69 128.60 -10.91 0.60 N 84 1 C4 B DG 12 ? ? N9 B DG 12 ? ? "C1'" B DG 12 ? ? 135.73 126.50 9.23 1.30 N 85 1 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DC 13 ? ? 127.12 119.70 7.42 1.20 Y 86 1 "C4'" B DC 13 ? ? "C3'" B DC 13 ? ? "C2'" B DC 13 ? ? 95.16 102.20 -7.04 0.70 N 87 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 123.32 108.30 15.02 0.30 N 88 1 N1 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 122.90 118.90 4.00 0.60 N 89 1 "C3'" B DC 13 ? ? "O3'" B DC 13 ? ? P B DT 14 ? ? 134.64 119.70 14.94 1.20 Y 90 1 "O4'" B DT 14 ? ? "C4'" B DT 14 ? ? "C3'" B DT 14 ? ? 99.94 104.50 -4.56 0.40 N 91 1 "C5'" B DT 14 ? ? "C4'" B DT 14 ? ? "C3'" B DT 14 ? ? 124.01 115.70 8.31 1.20 N 92 1 "C1'" B DT 14 ? ? "O4'" B DT 14 ? ? "C4'" B DT 14 ? ? 102.79 110.10 -7.31 1.00 N 93 1 "C4'" B DT 14 ? ? "C3'" B DT 14 ? ? "O3'" B DT 14 ? ? 125.21 112.30 12.91 2.00 N 94 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? "C2'" B DT 14 ? ? 98.80 105.90 -7.10 0.80 N 95 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 117.40 108.30 9.10 0.30 N 96 1 C2 B DT 14 ? ? N3 B DT 14 ? ? C4 B DT 14 ? ? 131.30 127.20 4.10 0.60 N 97 1 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 119.00 122.90 -3.90 0.60 N 98 1 "C5'" B DT 15 ? ? "C4'" B DT 15 ? ? "O4'" B DT 15 ? ? 122.78 109.80 12.98 1.10 N 99 1 "C1'" B DT 15 ? ? "O4'" B DT 15 ? ? "C4'" B DT 15 ? ? 99.47 110.10 -10.63 1.00 N 100 1 N1 B DT 15 ? ? "C1'" B DT 15 ? ? "C2'" B DT 15 ? ? 126.68 114.30 12.38 1.40 N 101 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 121.20 108.30 12.90 0.30 N 102 1 N3 B DT 15 ? ? C2 B DT 15 ? ? O2 B DT 15 ? ? 117.89 122.30 -4.41 0.60 N 103 1 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 117.82 122.90 -5.08 0.60 N 104 1 "O4'" B DC 16 ? ? "C4'" B DC 16 ? ? "C3'" B DC 16 ? ? 99.96 104.50 -4.54 0.40 N 105 1 "C5'" B DC 16 ? ? "C4'" B DC 16 ? ? "O4'" B DC 16 ? ? 120.04 109.80 10.24 1.10 N 106 1 N1 B DC 16 ? ? "C1'" B DC 16 ? ? "C2'" B DC 16 ? ? 126.03 114.30 11.73 1.40 N 107 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 127.41 108.30 19.11 0.30 N 108 1 C6 B DC 16 ? ? N1 B DC 16 ? ? C2 B DC 16 ? ? 117.78 120.30 -2.52 0.40 N 109 1 N1 B DC 16 ? ? C2 B DC 16 ? ? N3 B DC 16 ? ? 123.40 119.20 4.20 0.70 N 110 1 N3 B DC 16 ? ? C2 B DC 16 ? ? O2 B DC 16 ? ? 116.02 121.90 -5.88 0.70 N 111 1 CA C DVA 2 ? ? CB C DVA 2 ? ? CG2 C DVA 2 ? ? 121.32 110.90 10.42 1.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id DVA _pdbx_validate_torsion.auth_asym_id D _pdbx_validate_torsion.auth_seq_id 8 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -16.04 _pdbx_validate_torsion.psi -95.07 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id "C4'" _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id B _pdbx_validate_chiral.auth_comp_id DT _pdbx_validate_chiral.auth_seq_id 15 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 1 ? ? 0.063 'SIDE CHAIN' 2 1 DA B 10 ? ? 0.084 'SIDE CHAIN' 3 1 DT B 15 ? ? 0.071 'SIDE CHAIN' # _pdbx_molecule_features.prd_id PRD_000001 _pdbx_molecule_features.name 'Actinomycin D' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000001 C 2 PRD_000001 D # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'INTERCALATION, GROOVE BINDER' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 C PXZ 6 ? C PXZ 6 2 1 C PXZ 6 ? C PXZ 6 3 1 D PXZ 6 ? D PXZ 6 4 1 D PXZ 6 ? D PXZ 6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C THR 7 ? C THR 7 2 1 Y 1 C DVA 8 ? C DVA 8 3 1 Y 1 C PRO 9 ? C PRO 9 4 1 Y 1 C SAR 10 ? C SAR 10 5 1 Y 1 C MVA 11 ? C MVA 11 6 1 Y 1 D THR 1 ? D THR 1 7 1 Y 1 D DVA 2 ? D DVA 2 8 1 Y 1 D PRO 3 ? D PRO 3 9 1 Y 1 D SAR 4 ? D SAR 4 10 1 Y 1 D MVA 5 ? D MVA 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 DVA N N N N 144 DVA CA C N R 145 DVA CB C N N 146 DVA CG1 C N N 147 DVA CG2 C N N 148 DVA C C N N 149 DVA O O N N 150 DVA OXT O N N 151 DVA H H N N 152 DVA H2 H N N 153 DVA HA H N N 154 DVA HB H N N 155 DVA HG11 H N N 156 DVA HG12 H N N 157 DVA HG13 H N N 158 DVA HG21 H N N 159 DVA HG22 H N N 160 DVA HG23 H N N 161 DVA HXT H N N 162 HOH O O N N 163 HOH H1 H N N 164 HOH H2 H N N 165 MVA N N N N 166 MVA CN C N N 167 MVA CA C N S 168 MVA CB C N N 169 MVA CG1 C N N 170 MVA CG2 C N N 171 MVA C C N N 172 MVA O O N N 173 MVA OXT O N N 174 MVA H H N N 175 MVA HN1 H N N 176 MVA HN2 H N N 177 MVA HN3 H N N 178 MVA HA H N N 179 MVA HB H N N 180 MVA HG11 H N N 181 MVA HG12 H N N 182 MVA HG13 H N N 183 MVA HG21 H N N 184 MVA HG22 H N N 185 MVA HG23 H N N 186 MVA HXT H N N 187 PRO N N N N 188 PRO CA C N S 189 PRO C C N N 190 PRO O O N N 191 PRO CB C N N 192 PRO CG C N N 193 PRO CD C N N 194 PRO OXT O N N 195 PRO H H N N 196 PRO HA H N N 197 PRO HB2 H N N 198 PRO HB3 H N N 199 PRO HG2 H N N 200 PRO HG3 H N N 201 PRO HD2 H N N 202 PRO HD3 H N N 203 PRO HXT H N N 204 PXZ C1 C N N 205 PXZ C0 C N N 206 PXZ O1 O N N 207 PXZ C2 C N N 208 PXZ N2 N N N 209 PXZ C3 C N N 210 PXZ O3 O N N 211 PXZ C4 C N N 212 PXZ O5 O N N 213 PXZ C6 C Y N 214 PXZ C7 C Y N 215 PXZ C8 C Y N 216 PXZ C9 C Y N 217 PXZ "C0'" C N N 218 PXZ "O1'" O N N 219 PXZ N10 N N N 220 PXZ C11 C N N 221 PXZ C12 C N N 222 PXZ C13 C Y N 223 PXZ C14 C Y N 224 PXZ C15 C N N 225 PXZ C16 C N N 226 PXZ HN21 H N N 227 PXZ HN22 H N N 228 PXZ H7 H N N 229 PXZ H8 H N N 230 PXZ H151 H N N 231 PXZ H152 H N N 232 PXZ H153 H N N 233 PXZ H161 H N N 234 PXZ H162 H N N 235 PXZ H163 H N N 236 PXZ "OXT'" O N N 237 PXZ OXT O N N 238 PXZ "HXT'" H N N 239 PXZ HXT H N N 240 SAR N N N N 241 SAR CA C N N 242 SAR C C N N 243 SAR O O N N 244 SAR CN C N N 245 SAR OXT O N N 246 SAR H H N N 247 SAR HA2 H N N 248 SAR HA3 H N N 249 SAR HN1 H N N 250 SAR HN2 H N N 251 SAR HN3 H N N 252 SAR HXT H N N 253 THR N N N N 254 THR CA C N S 255 THR C C N N 256 THR O O N N 257 THR CB C N R 258 THR OG1 O N N 259 THR CG2 C N N 260 THR OXT O N N 261 THR H H N N 262 THR H2 H N N 263 THR HA H N N 264 THR HB H N N 265 THR HG1 H N N 266 THR HG21 H N N 267 THR HG22 H N N 268 THR HG23 H N N 269 THR HXT H N N 270 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 DVA N CA sing N N 150 DVA N H sing N N 151 DVA N H2 sing N N 152 DVA CA CB sing N N 153 DVA CA C sing N N 154 DVA CA HA sing N N 155 DVA CB CG1 sing N N 156 DVA CB CG2 sing N N 157 DVA CB HB sing N N 158 DVA CG1 HG11 sing N N 159 DVA CG1 HG12 sing N N 160 DVA CG1 HG13 sing N N 161 DVA CG2 HG21 sing N N 162 DVA CG2 HG22 sing N N 163 DVA CG2 HG23 sing N N 164 DVA C O doub N N 165 DVA C OXT sing N N 166 DVA OXT HXT sing N N 167 HOH O H1 sing N N 168 HOH O H2 sing N N 169 MVA N CN sing N N 170 MVA N CA sing N N 171 MVA N H sing N N 172 MVA CN HN1 sing N N 173 MVA CN HN2 sing N N 174 MVA CN HN3 sing N N 175 MVA CA CB sing N N 176 MVA CA C sing N N 177 MVA CA HA sing N N 178 MVA CB CG1 sing N N 179 MVA CB CG2 sing N N 180 MVA CB HB sing N N 181 MVA CG1 HG11 sing N N 182 MVA CG1 HG12 sing N N 183 MVA CG1 HG13 sing N N 184 MVA CG2 HG21 sing N N 185 MVA CG2 HG22 sing N N 186 MVA CG2 HG23 sing N N 187 MVA C O doub N N 188 MVA C OXT sing N N 189 MVA OXT HXT sing N N 190 PRO N CA sing N N 191 PRO N CD sing N N 192 PRO N H sing N N 193 PRO CA C sing N N 194 PRO CA CB sing N N 195 PRO CA HA sing N N 196 PRO C O doub N N 197 PRO C OXT sing N N 198 PRO CB CG sing N N 199 PRO CB HB2 sing N N 200 PRO CB HB3 sing N N 201 PRO CG CD sing N N 202 PRO CG HG2 sing N N 203 PRO CG HG3 sing N N 204 PRO CD HD2 sing N N 205 PRO CD HD3 sing N N 206 PRO OXT HXT sing N N 207 PXZ C1 C0 sing N N 208 PXZ C1 C2 doub N N 209 PXZ C1 C11 sing N N 210 PXZ C0 O1 doub N N 211 PXZ C2 N2 sing N N 212 PXZ C2 C3 sing N N 213 PXZ N2 HN21 sing N N 214 PXZ N2 HN22 sing N N 215 PXZ C3 O3 doub N N 216 PXZ C3 C4 sing N N 217 PXZ C4 C12 doub N N 218 PXZ C4 C15 sing N N 219 PXZ O5 C12 sing N N 220 PXZ O5 C13 sing N N 221 PXZ C6 C7 doub Y N 222 PXZ C6 C13 sing Y N 223 PXZ C6 C16 sing N N 224 PXZ C7 C8 sing Y N 225 PXZ C7 H7 sing N N 226 PXZ C8 C9 doub Y N 227 PXZ C8 H8 sing N N 228 PXZ C9 "C0'" sing N N 229 PXZ C9 C14 sing Y N 230 PXZ "C0'" "O1'" doub N N 231 PXZ N10 C11 doub N N 232 PXZ N10 C14 sing N N 233 PXZ C11 C12 sing N N 234 PXZ C13 C14 doub Y N 235 PXZ C15 H151 sing N N 236 PXZ C15 H152 sing N N 237 PXZ C15 H153 sing N N 238 PXZ C16 H161 sing N N 239 PXZ C16 H162 sing N N 240 PXZ C16 H163 sing N N 241 PXZ "C0'" "OXT'" sing N N 242 PXZ C0 OXT sing N N 243 PXZ "OXT'" "HXT'" sing N N 244 PXZ OXT HXT sing N N 245 SAR N CA sing N N 246 SAR N CN sing N N 247 SAR N H sing N N 248 SAR CA C sing N N 249 SAR CA HA2 sing N N 250 SAR CA HA3 sing N N 251 SAR C O doub N N 252 SAR C OXT sing N N 253 SAR CN HN1 sing N N 254 SAR CN HN2 sing N N 255 SAR CN HN3 sing N N 256 SAR OXT HXT sing N N 257 THR N CA sing N N 258 THR N H sing N N 259 THR N H2 sing N N 260 THR CA C sing N N 261 THR CA CB sing N N 262 THR CA HA sing N N 263 THR C O doub N N 264 THR C OXT sing N N 265 THR CB OG1 sing N N 266 THR CB CG2 sing N N 267 THR CB HB sing N N 268 THR OG1 HG1 sing N N 269 THR CG2 HG21 sing N N 270 THR CG2 HG22 sing N N 271 THR CG2 HG23 sing N N 272 THR OXT HXT sing N N 273 # _atom_sites.entry_id 173D _atom_sites.fract_transf_matrix[1][1] 0.014306 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016284 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018433 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'VALINES 19 A AND 25 B OF ACTINOMYCIN D ARE D-VALINES.' # loop_ _atom_type.symbol C N O P # loop_