data_176D # _entry.id 176D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 176D pdb_0000176d 10.2210/pdb176d/pdb WWPDB D_1000170169 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-11-01 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2023-11-15 5 'Structure model' 2 1 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' Other 9 4 'Structure model' 'Structure summary' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' entity 6 4 'Structure model' pdbx_database_status 7 4 'Structure model' struct_conn 8 5 'Structure model' pdbx_entry_details 9 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.Cartn_x' 2 4 'Structure model' '_atom_site.Cartn_y' 3 4 'Structure model' '_atom_site.Cartn_z' 4 4 'Structure model' '_atom_site.auth_atom_id' 5 4 'Structure model' '_atom_site.label_atom_id' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' 8 4 'Structure model' '_entity.formula_weight' 9 4 'Structure model' '_pdbx_database_status.process_site' 10 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 176D _pdbx_database_status.recvd_initial_deposition_date 1994-05-17 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Brown, S.C.' 1 'Veal, J.M.' 2 # _citation.id primary _citation.title 'NMR solution structure of a peptide nucleic acid complexed with RNA.' _citation.journal_abbrev Science _citation.journal_volume 265 _citation.page_first 777 _citation.page_last 780 _citation.year 1994 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7519361 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Brown, S.C.' 1 ? primary 'Thomson, S.A.' 2 ? primary 'Veal, J.M.' 3 ? primary 'Davis, D.G.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GPN*APN*APN*CPN*TPN*CPN)-3') ; 1634.599 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(P*GP*AP*GP*UP*UP*C)-3') ; 1892.173 1 ? ? ? ? # loop_ _entity_keywords.entity_id _entity_keywords.text 1 'PEPTIDE NUCLEIC ACID' 2 'RIBONUCLEIC ACID' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'peptide nucleic acid' no yes '(GPN)(APN)(APN)(CPN)(TPN)(CPN)' XXXXXX A ? 2 polyribonucleotide no no GAGUUC GAGUUC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GPN n 1 2 APN n 1 3 APN n 1 4 CPN n 1 5 TPN n 1 6 CPN n 2 1 G n 2 2 A n 2 3 G n 2 4 U n 2 5 U n 2 6 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'CHEMICALLY SYNTHESIZED' 2 1 sample ? ? ? ? ? 'CHEMICALLY SYNTHESIZED' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 APN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE ? 'C11 H16 N7 O3 1' 294.290 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE ? 'C10 H16 N5 O4 1' 270.265 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE ? 'C11 H16 N7 O4 1' 310.289 TPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE ? 'C11 H17 N4 O5 1' 285.276 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GPN 1 1 1 GPN GPN A . n A 1 2 APN 2 2 2 APN APN A . n A 1 3 APN 3 3 3 APN APN A . n A 1 4 CPN 4 4 4 CPN CPN A . n A 1 5 TPN 5 5 5 TPN TPN A . n A 1 6 CPN 6 6 6 CPN CPN A . n B 2 1 G 1 7 7 G G B . n B 2 2 A 2 8 8 A A B . n B 2 3 G 3 9 9 G G B . n B 2 4 U 4 10 10 U U B . n B 2 5 U 5 11 11 U U B . n B 2 6 C 6 12 12 C C B . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # _cell.entry_id 176D _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 176D _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 176D _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 176D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 176D _struct.title 'NMR SOLUTION STRUCTURE OF A PEPTIDE NUCLEIC ACID COMPLEXED WITH RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 176D _struct_keywords.pdbx_keywords 'PEPTIDE NUCLEIC ACID/RNA' _struct_keywords.text 'RNA, PNA, DOUBLE HELIX, PEPTIDE NUCLEIC ACID-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 176D 176D ? ? ? 2 2 PDB 176D 176D ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 176D A 1 ? 6 ? 176D 1 ? 6 ? 1 6 2 2 176D B 1 ? 6 ? 176D 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GPN 1 C ? ? ? 1_555 A APN 2 N ? ? A GPN 1 A APN 2 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale2 covale both ? A APN 2 C ? ? ? 1_555 A APN 3 N ? ? A APN 2 A APN 3 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale3 covale both ? A APN 3 C ? ? ? 1_555 A CPN 4 N ? ? A APN 3 A CPN 4 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale both ? A CPN 4 C ? ? ? 1_555 A TPN 5 N ? ? A CPN 4 A TPN 5 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale5 covale both ? A TPN 5 C ? ? ? 1_555 A CPN 6 N ? ? A TPN 5 A CPN 6 1_555 ? ? ? ? ? ? ? 1.337 ? ? hydrog1 hydrog ? ? A GPN 1 N1 ? ? ? 1_555 B C 6 N3 ? ? A GPN 1 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GPN 1 N2 ? ? ? 1_555 B C 6 O2 ? ? A GPN 1 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GPN 1 O6 ? ? ? 1_555 B C 6 N4 ? ? A GPN 1 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A APN 2 N1 ? ? ? 1_555 B U 5 N3 ? ? A APN 2 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A APN 2 N6 ? ? ? 1_555 B U 5 O4 ? ? A APN 2 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A APN 3 N1 ? ? ? 1_555 B U 4 N3 ? ? A APN 3 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A APN 3 N6 ? ? ? 1_555 B U 4 O4 ? ? A APN 3 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A CPN 4 N3 ? ? ? 1_555 B G 3 N1 ? ? A CPN 4 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A CPN 4 N4 ? ? ? 1_555 B G 3 O6 ? ? A CPN 4 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A CPN 4 O2 ? ? ? 1_555 B G 3 N2 ? ? A CPN 4 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A TPN 5 N3 ? ? ? 1_555 B A 2 N1 ? ? A TPN 5 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A TPN 5 O4 ? ? ? 1_555 B A 2 N6 ? ? A TPN 5 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A CPN 6 N3 ? ? ? 1_555 B G 1 N1 ? ? A CPN 6 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A CPN 6 N4 ? ? ? 1_555 B G 1 O6 ? ? A CPN 6 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A CPN 6 O2 ? ? ? 1_555 B G 1 N2 ? ? A CPN 6 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 GPN A 1 ? . . . . GPN A 1 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 2 APN A 2 ? . . . . APN A 2 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 3 APN A 3 ? . . . . APN A 3 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 4 CPN A 4 ? . . . . CPN A 4 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 5 TPN A 5 ? . . . . TPN A 5 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 6 CPN A 6 ? . . . . CPN A 6 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' # _pdbx_entry_details.entry_id 176D _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.97 108.50 5.47 0.70 N 2 1 "O4'" B U 11 ? ? "C1'" B U 11 ? ? N1 B U 11 ? ? 113.15 108.50 4.65 0.70 N 3 2 "C5'" B G 7 ? ? "C4'" B G 7 ? ? "O4'" B G 7 ? ? 115.24 109.80 5.44 0.90 N 4 2 "O4'" B G 9 ? ? "C1'" B G 9 ? ? N9 B G 9 ? ? 113.16 108.50 4.66 0.70 N 5 2 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.71 108.50 5.21 0.70 N 6 2 "O4'" B U 11 ? ? "C1'" B U 11 ? ? N1 B U 11 ? ? 112.97 108.50 4.47 0.70 N 7 3 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.21 108.50 4.71 0.70 N 8 3 "O4'" B U 11 ? ? "C1'" B U 11 ? ? N1 B U 11 ? ? 113.42 108.50 4.92 0.70 N 9 4 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.19 108.50 4.69 0.70 N 10 4 "O4'" B U 11 ? ? "C1'" B U 11 ? ? N1 B U 11 ? ? 113.58 108.50 5.08 0.70 N 11 5 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.15 108.50 4.65 0.70 N 12 5 "O4'" B U 11 ? ? "C1'" B U 11 ? ? N1 B U 11 ? ? 112.82 108.50 4.32 0.70 N 13 6 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.48 108.50 4.98 0.70 N 14 6 "O4'" B U 11 ? ? "C1'" B U 11 ? ? N1 B U 11 ? ? 112.89 108.50 4.39 0.70 N 15 7 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.56 108.50 5.06 0.70 N 16 7 "O4'" B U 11 ? ? "C1'" B U 11 ? ? N1 B U 11 ? ? 113.36 108.50 4.86 0.70 N 17 8 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.54 108.50 5.04 0.70 N 18 8 "O4'" B U 11 ? ? "C1'" B U 11 ? ? N1 B U 11 ? ? 113.20 108.50 4.70 0.70 N 19 9 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.96 108.50 5.46 0.70 N 20 9 "O4'" B U 11 ? ? "C1'" B U 11 ? ? N1 B U 11 ? ? 112.97 108.50 4.47 0.70 N 21 10 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.20 108.50 4.70 0.70 N 22 10 "O4'" B U 11 ? ? "C1'" B U 11 ? ? N1 B U 11 ? ? 113.49 108.50 4.99 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A B 8 ? ? 0.065 'SIDE CHAIN' 2 1 U B 10 ? ? 0.059 'SIDE CHAIN' 3 2 U B 10 ? ? 0.070 'SIDE CHAIN' 4 3 A B 8 ? ? 0.080 'SIDE CHAIN' 5 3 U B 10 ? ? 0.074 'SIDE CHAIN' 6 4 A B 8 ? ? 0.065 'SIDE CHAIN' 7 4 U B 11 ? ? 0.103 'SIDE CHAIN' 8 5 A B 8 ? ? 0.102 'SIDE CHAIN' 9 5 U B 10 ? ? 0.083 'SIDE CHAIN' 10 5 C B 12 ? ? 0.074 'SIDE CHAIN' 11 6 G B 7 ? ? 0.080 'SIDE CHAIN' 12 6 A B 8 ? ? 0.113 'SIDE CHAIN' 13 6 U B 10 ? ? 0.059 'SIDE CHAIN' 14 7 G B 7 ? ? 0.127 'SIDE CHAIN' 15 7 A B 8 ? ? 0.095 'SIDE CHAIN' 16 7 G B 9 ? ? 0.072 'SIDE CHAIN' 17 7 U B 10 ? ? 0.089 'SIDE CHAIN' 18 7 C B 12 ? ? 0.092 'SIDE CHAIN' 19 8 A B 8 ? ? 0.095 'SIDE CHAIN' 20 8 U B 10 ? ? 0.076 'SIDE CHAIN' 21 9 G B 9 ? ? 0.062 'SIDE CHAIN' 22 9 U B 10 ? ? 0.077 'SIDE CHAIN' 23 9 C B 12 ? ? 0.077 'SIDE CHAIN' 24 10 A B 8 ? ? 0.075 'SIDE CHAIN' 25 10 U B 10 ? ? 0.067 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GPN 1 A GPN 1 ? DG ? 2 A APN 2 A APN 2 ? DA ? 3 A APN 3 A APN 3 ? DA ? 4 A CPN 4 A CPN 4 ? DC ? 5 A TPN 5 A TPN 5 ? DT ? 6 A CPN 6 A CPN 6 ? DC ? # _pdbx_nmr_ensemble.entry_id 176D _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_refine.entry_id 176D _pdbx_nmr_refine.method 'DISTANCE GEOMETRY, SIMULATED ANNEALING' _pdbx_nmr_refine.details 'NUMBER OF PROTEIN ATOMS 0 NUMBER OF NUCLEIC ACID ATOMS 3930 NUMBER OF SOLVENT ATOMS 0' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version 3.10 _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors BRUNGER _pdbx_nmr_software.ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 APN "C8'" C N N 38 APN "C7'" C N N 39 APN "O7'" O N N 40 APN "C5'" C N N 41 APN C C N N 42 APN O O N N 43 APN OXT O N N 44 APN "N4'" N N N 45 APN "C3'" C N N 46 APN "C2'" C N N 47 APN N N N N 48 APN N9 N Y N 49 APN C8 C Y N 50 APN N7 N Y N 51 APN C5 C Y N 52 APN C6 C Y N 53 APN N6 N N N 54 APN N1 N Y N 55 APN C2 C Y N 56 APN N3 N Y N 57 APN C4 C Y N 58 APN "H8'1" H N N 59 APN "H8'2" H N N 60 APN "H5'1" H N N 61 APN "H5'2" H N N 62 APN HXT H N N 63 APN "H3'1" H N N 64 APN "H3'2" H N N 65 APN "H2'1" H N N 66 APN "H2'2" H N N 67 APN H H N N 68 APN H2 H N N 69 APN H3 H N N 70 APN H8 H N N 71 APN HN61 H N N 72 APN HN62 H N N 73 APN H21 H N N 74 C OP3 O N N 75 C P P N N 76 C OP1 O N N 77 C OP2 O N N 78 C "O5'" O N N 79 C "C5'" C N N 80 C "C4'" C N R 81 C "O4'" O N N 82 C "C3'" C N S 83 C "O3'" O N N 84 C "C2'" C N R 85 C "O2'" O N N 86 C "C1'" C N R 87 C N1 N N N 88 C C2 C N N 89 C O2 O N N 90 C N3 N N N 91 C C4 C N N 92 C N4 N N N 93 C C5 C N N 94 C C6 C N N 95 C HOP3 H N N 96 C HOP2 H N N 97 C "H5'" H N N 98 C "H5''" H N N 99 C "H4'" H N N 100 C "H3'" H N N 101 C "HO3'" H N N 102 C "H2'" H N N 103 C "HO2'" H N N 104 C "H1'" H N N 105 C H41 H N N 106 C H42 H N N 107 C H5 H N N 108 C H6 H N N 109 CPN "C8'" C N N 110 CPN "C7'" C N N 111 CPN "O7'" O N N 112 CPN "C5'" C N N 113 CPN C C N N 114 CPN O O N N 115 CPN OXT O N N 116 CPN "N4'" N N N 117 CPN "C3'" C N N 118 CPN "C2'" C N N 119 CPN N N N N 120 CPN N1 N N N 121 CPN C2 C N N 122 CPN N3 N N N 123 CPN C4 C N N 124 CPN C5 C N N 125 CPN C6 C N N 126 CPN O2 O N N 127 CPN N4 N N N 128 CPN "H8'1" H N N 129 CPN "H8'2" H N N 130 CPN "H5'1" H N N 131 CPN "H5'2" H N N 132 CPN HXT H N N 133 CPN "H3'1" H N N 134 CPN "H3'2" H N N 135 CPN "H2'1" H N N 136 CPN "H2'2" H N N 137 CPN H H N N 138 CPN H2 H N N 139 CPN H3 H N N 140 CPN H5 H N N 141 CPN H6 H N N 142 CPN HN41 H N N 143 CPN HN42 H N N 144 G OP3 O N N 145 G P P N N 146 G OP1 O N N 147 G OP2 O N N 148 G "O5'" O N N 149 G "C5'" C N N 150 G "C4'" C N R 151 G "O4'" O N N 152 G "C3'" C N S 153 G "O3'" O N N 154 G "C2'" C N R 155 G "O2'" O N N 156 G "C1'" C N R 157 G N9 N Y N 158 G C8 C Y N 159 G N7 N Y N 160 G C5 C Y N 161 G C6 C N N 162 G O6 O N N 163 G N1 N N N 164 G C2 C N N 165 G N2 N N N 166 G N3 N N N 167 G C4 C Y N 168 G HOP3 H N N 169 G HOP2 H N N 170 G "H5'" H N N 171 G "H5''" H N N 172 G "H4'" H N N 173 G "H3'" H N N 174 G "HO3'" H N N 175 G "H2'" H N N 176 G "HO2'" H N N 177 G "H1'" H N N 178 G H8 H N N 179 G H1 H N N 180 G H21 H N N 181 G H22 H N N 182 GPN "C8'" C N N 183 GPN "C7'" C N N 184 GPN "O7'" O N N 185 GPN "C5'" C N N 186 GPN C C N N 187 GPN O O N N 188 GPN OXT O N N 189 GPN "N4'" N N N 190 GPN "C3'" C N N 191 GPN "C2'" C N N 192 GPN N N N N 193 GPN N9 N Y N 194 GPN C8 C Y N 195 GPN N7 N Y N 196 GPN C5 C Y N 197 GPN C6 C N N 198 GPN O6 O N N 199 GPN N1 N N N 200 GPN C2 C N N 201 GPN N2 N N N 202 GPN N3 N N N 203 GPN C4 C Y N 204 GPN "H8'1" H N N 205 GPN "H8'2" H N N 206 GPN "H5'1" H N N 207 GPN "H5'2" H N N 208 GPN HXT H N N 209 GPN "H3'1" H N N 210 GPN "H3'2" H N N 211 GPN "H2'1" H N N 212 GPN "H2'2" H N N 213 GPN H H N N 214 GPN H2 H N N 215 GPN H3 H N N 216 GPN H8 H N N 217 GPN HN1 H N N 218 GPN HN21 H N N 219 GPN HN22 H N N 220 TPN "C8'" C N N 221 TPN "C7'" C N N 222 TPN "O7'" O N N 223 TPN "C5'" C N N 224 TPN C C N N 225 TPN O O N N 226 TPN OXT O N N 227 TPN "N4'" N N N 228 TPN "C3'" C N N 229 TPN "C2'" C N N 230 TPN N N N N 231 TPN N1 N N N 232 TPN C6 C N N 233 TPN C2 C N N 234 TPN O2 O N N 235 TPN N3 N N N 236 TPN C4 C N N 237 TPN O4 O N N 238 TPN C5 C N N 239 TPN C5M C N N 240 TPN "H8'1" H N N 241 TPN "H8'2" H N N 242 TPN "H5'1" H N N 243 TPN "H5'2" H N N 244 TPN HXT H N N 245 TPN "H3'1" H N N 246 TPN "H3'2" H N N 247 TPN "H2'1" H N N 248 TPN "H2'2" H N N 249 TPN H H N N 250 TPN H2 H N N 251 TPN H3 H N N 252 TPN H6 H N N 253 TPN HN3 H N N 254 TPN HM51 H N N 255 TPN HM52 H N N 256 TPN HM53 H N N 257 U OP3 O N N 258 U P P N N 259 U OP1 O N N 260 U OP2 O N N 261 U "O5'" O N N 262 U "C5'" C N N 263 U "C4'" C N R 264 U "O4'" O N N 265 U "C3'" C N S 266 U "O3'" O N N 267 U "C2'" C N R 268 U "O2'" O N N 269 U "C1'" C N R 270 U N1 N N N 271 U C2 C N N 272 U O2 O N N 273 U N3 N N N 274 U C4 C N N 275 U O4 O N N 276 U C5 C N N 277 U C6 C N N 278 U HOP3 H N N 279 U HOP2 H N N 280 U "H5'" H N N 281 U "H5''" H N N 282 U "H4'" H N N 283 U "H3'" H N N 284 U "HO3'" H N N 285 U "H2'" H N N 286 U "HO2'" H N N 287 U "H1'" H N N 288 U H3 H N N 289 U H5 H N N 290 U H6 H N N 291 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 APN "C8'" "C7'" sing N N 40 APN "C8'" N9 sing N N 41 APN "C8'" "H8'1" sing N N 42 APN "C8'" "H8'2" sing N N 43 APN "C7'" "O7'" doub N N 44 APN "C7'" "N4'" sing N N 45 APN "C5'" C sing N N 46 APN "C5'" "N4'" sing N N 47 APN "C5'" "H5'1" sing N N 48 APN "C5'" "H5'2" sing N N 49 APN C O doub N N 50 APN C OXT sing N N 51 APN OXT HXT sing N N 52 APN "N4'" "C3'" sing N N 53 APN "C3'" "C2'" sing N N 54 APN "C3'" "H3'1" sing N N 55 APN "C3'" "H3'2" sing N N 56 APN "C2'" N sing N N 57 APN "C2'" "H2'1" sing N N 58 APN "C2'" "H2'2" sing N N 59 APN N H sing N N 60 APN N H2 sing N N 61 APN N H3 sing N N 62 APN N9 C8 sing Y N 63 APN N9 C4 sing Y N 64 APN C8 N7 doub Y N 65 APN C8 H8 sing N N 66 APN N7 C5 sing Y N 67 APN C5 C6 sing Y N 68 APN C5 C4 doub Y N 69 APN C6 N6 sing N N 70 APN C6 N1 doub Y N 71 APN N6 HN61 sing N N 72 APN N6 HN62 sing N N 73 APN N1 C2 sing Y N 74 APN C2 N3 doub Y N 75 APN C2 H21 sing N N 76 APN N3 C4 sing Y N 77 C OP3 P sing N N 78 C OP3 HOP3 sing N N 79 C P OP1 doub N N 80 C P OP2 sing N N 81 C P "O5'" sing N N 82 C OP2 HOP2 sing N N 83 C "O5'" "C5'" sing N N 84 C "C5'" "C4'" sing N N 85 C "C5'" "H5'" sing N N 86 C "C5'" "H5''" sing N N 87 C "C4'" "O4'" sing N N 88 C "C4'" "C3'" sing N N 89 C "C4'" "H4'" sing N N 90 C "O4'" "C1'" sing N N 91 C "C3'" "O3'" sing N N 92 C "C3'" "C2'" sing N N 93 C "C3'" "H3'" sing N N 94 C "O3'" "HO3'" sing N N 95 C "C2'" "O2'" sing N N 96 C "C2'" "C1'" sing N N 97 C "C2'" "H2'" sing N N 98 C "O2'" "HO2'" sing N N 99 C "C1'" N1 sing N N 100 C "C1'" "H1'" sing N N 101 C N1 C2 sing N N 102 C N1 C6 sing N N 103 C C2 O2 doub N N 104 C C2 N3 sing N N 105 C N3 C4 doub N N 106 C C4 N4 sing N N 107 C C4 C5 sing N N 108 C N4 H41 sing N N 109 C N4 H42 sing N N 110 C C5 C6 doub N N 111 C C5 H5 sing N N 112 C C6 H6 sing N N 113 CPN "C8'" "C7'" sing N N 114 CPN "C8'" N1 sing N N 115 CPN "C8'" "H8'1" sing N N 116 CPN "C8'" "H8'2" sing N N 117 CPN "C7'" "O7'" doub N N 118 CPN "C7'" "N4'" sing N N 119 CPN "C5'" C sing N N 120 CPN "C5'" "N4'" sing N N 121 CPN "C5'" "H5'1" sing N N 122 CPN "C5'" "H5'2" sing N N 123 CPN C O doub N N 124 CPN C OXT sing N N 125 CPN OXT HXT sing N N 126 CPN "N4'" "C3'" sing N N 127 CPN "C3'" "C2'" sing N N 128 CPN "C3'" "H3'1" sing N N 129 CPN "C3'" "H3'2" sing N N 130 CPN "C2'" N sing N N 131 CPN "C2'" "H2'1" sing N N 132 CPN "C2'" "H2'2" sing N N 133 CPN N H sing N N 134 CPN N H2 sing N N 135 CPN N H3 sing N N 136 CPN N1 C2 sing N N 137 CPN N1 C6 sing N N 138 CPN C2 N3 sing N N 139 CPN C2 O2 doub N N 140 CPN N3 C4 doub N N 141 CPN C4 C5 sing N N 142 CPN C4 N4 sing N N 143 CPN C5 C6 doub N N 144 CPN C5 H5 sing N N 145 CPN C6 H6 sing N N 146 CPN N4 HN41 sing N N 147 CPN N4 HN42 sing N N 148 G OP3 P sing N N 149 G OP3 HOP3 sing N N 150 G P OP1 doub N N 151 G P OP2 sing N N 152 G P "O5'" sing N N 153 G OP2 HOP2 sing N N 154 G "O5'" "C5'" sing N N 155 G "C5'" "C4'" sing N N 156 G "C5'" "H5'" sing N N 157 G "C5'" "H5''" sing N N 158 G "C4'" "O4'" sing N N 159 G "C4'" "C3'" sing N N 160 G "C4'" "H4'" sing N N 161 G "O4'" "C1'" sing N N 162 G "C3'" "O3'" sing N N 163 G "C3'" "C2'" sing N N 164 G "C3'" "H3'" sing N N 165 G "O3'" "HO3'" sing N N 166 G "C2'" "O2'" sing N N 167 G "C2'" "C1'" sing N N 168 G "C2'" "H2'" sing N N 169 G "O2'" "HO2'" sing N N 170 G "C1'" N9 sing N N 171 G "C1'" "H1'" sing N N 172 G N9 C8 sing Y N 173 G N9 C4 sing Y N 174 G C8 N7 doub Y N 175 G C8 H8 sing N N 176 G N7 C5 sing Y N 177 G C5 C6 sing N N 178 G C5 C4 doub Y N 179 G C6 O6 doub N N 180 G C6 N1 sing N N 181 G N1 C2 sing N N 182 G N1 H1 sing N N 183 G C2 N2 sing N N 184 G C2 N3 doub N N 185 G N2 H21 sing N N 186 G N2 H22 sing N N 187 G N3 C4 sing N N 188 GPN "C8'" "C7'" sing N N 189 GPN "C8'" N9 sing N N 190 GPN "C8'" "H8'1" sing N N 191 GPN "C8'" "H8'2" sing N N 192 GPN "C7'" "O7'" doub N N 193 GPN "C7'" "N4'" sing N N 194 GPN "C5'" C sing N N 195 GPN "C5'" "N4'" sing N N 196 GPN "C5'" "H5'1" sing N N 197 GPN "C5'" "H5'2" sing N N 198 GPN C O doub N N 199 GPN C OXT sing N N 200 GPN OXT HXT sing N N 201 GPN "N4'" "C3'" sing N N 202 GPN "C3'" "C2'" sing N N 203 GPN "C3'" "H3'1" sing N N 204 GPN "C3'" "H3'2" sing N N 205 GPN "C2'" N sing N N 206 GPN "C2'" "H2'1" sing N N 207 GPN "C2'" "H2'2" sing N N 208 GPN N H sing N N 209 GPN N H2 sing N N 210 GPN N H3 sing N N 211 GPN N9 C8 sing Y N 212 GPN N9 C4 sing Y N 213 GPN C8 N7 doub Y N 214 GPN C8 H8 sing N N 215 GPN N7 C5 sing Y N 216 GPN C5 C6 sing N N 217 GPN C5 C4 doub Y N 218 GPN C6 O6 doub N N 219 GPN C6 N1 sing N N 220 GPN N1 C2 sing N N 221 GPN N1 HN1 sing N N 222 GPN C2 N2 sing N N 223 GPN C2 N3 doub N N 224 GPN N2 HN21 sing N N 225 GPN N2 HN22 sing N N 226 GPN N3 C4 sing N N 227 TPN "C8'" "C7'" sing N N 228 TPN "C8'" N1 sing N N 229 TPN "C8'" "H8'1" sing N N 230 TPN "C8'" "H8'2" sing N N 231 TPN "C7'" "O7'" doub N N 232 TPN "C7'" "N4'" sing N N 233 TPN "C5'" C sing N N 234 TPN "C5'" "N4'" sing N N 235 TPN "C5'" "H5'1" sing N N 236 TPN "C5'" "H5'2" sing N N 237 TPN C O doub N N 238 TPN C OXT sing N N 239 TPN OXT HXT sing N N 240 TPN "N4'" "C3'" sing N N 241 TPN "C3'" "C2'" sing N N 242 TPN "C3'" "H3'1" sing N N 243 TPN "C3'" "H3'2" sing N N 244 TPN "C2'" N sing N N 245 TPN "C2'" "H2'1" sing N N 246 TPN "C2'" "H2'2" sing N N 247 TPN N H sing N N 248 TPN N H2 sing N N 249 TPN N H3 sing N N 250 TPN N1 C6 sing N N 251 TPN N1 C2 sing N N 252 TPN C6 C5 doub N N 253 TPN C6 H6 sing N N 254 TPN C2 O2 doub N N 255 TPN C2 N3 sing N N 256 TPN N3 C4 sing N N 257 TPN N3 HN3 sing N N 258 TPN C4 O4 doub N N 259 TPN C4 C5 sing N N 260 TPN C5 C5M sing N N 261 TPN C5M HM51 sing N N 262 TPN C5M HM52 sing N N 263 TPN C5M HM53 sing N N 264 U OP3 P sing N N 265 U OP3 HOP3 sing N N 266 U P OP1 doub N N 267 U P OP2 sing N N 268 U P "O5'" sing N N 269 U OP2 HOP2 sing N N 270 U "O5'" "C5'" sing N N 271 U "C5'" "C4'" sing N N 272 U "C5'" "H5'" sing N N 273 U "C5'" "H5''" sing N N 274 U "C4'" "O4'" sing N N 275 U "C4'" "C3'" sing N N 276 U "C4'" "H4'" sing N N 277 U "O4'" "C1'" sing N N 278 U "C3'" "O3'" sing N N 279 U "C3'" "C2'" sing N N 280 U "C3'" "H3'" sing N N 281 U "O3'" "HO3'" sing N N 282 U "C2'" "O2'" sing N N 283 U "C2'" "C1'" sing N N 284 U "C2'" "H2'" sing N N 285 U "O2'" "HO2'" sing N N 286 U "C1'" N1 sing N N 287 U "C1'" "H1'" sing N N 288 U N1 C2 sing N N 289 U N1 C6 sing N N 290 U C2 O2 doub N N 291 U C2 N3 sing N N 292 U N3 C4 sing N N 293 U N3 H3 sing N N 294 U C4 O4 doub N N 295 U C4 C5 sing N N 296 U C5 C6 doub N N 297 U C5 H5 sing N N 298 U C6 H6 sing N N 299 # _ndb_struct_conf_na.entry_id 176D _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GPN 1 1_555 B C 6 1_555 -0.951 -0.092 -0.311 -5.733 -7.082 4.380 1 A_GPN1:C12_B A 1 ? B 12 ? 19 1 1 A APN 2 1_555 B U 5 1_555 -0.058 0.024 -0.068 5.822 -14.313 2.083 2 A_APN2:U11_B A 2 ? B 11 ? 20 1 1 A APN 3 1_555 B U 4 1_555 -0.479 0.043 0.162 1.691 -18.606 4.967 3 A_APN3:U10_B A 3 ? B 10 ? 20 1 1 A CPN 4 1_555 B G 3 1_555 -0.184 -0.004 -0.014 7.994 -19.789 0.808 4 A_CPN4:G9_B A 4 ? B 9 ? 19 1 1 A TPN 5 1_555 B A 2 1_555 0.467 -0.247 0.553 6.889 -19.138 -2.880 5 A_TPN5:A8_B A 5 ? B 8 ? 20 1 1 A CPN 6 1_555 B G 1 1_555 0.952 -0.307 1.355 -21.945 -8.741 -1.964 6 A_CPN6:G7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GPN 1 1_555 B C 6 1_555 A APN 2 1_555 B U 5 1_555 0.470 -1.523 3.220 -2.162 5.041 27.645 -4.235 -1.440 2.858 10.420 4.468 28.174 1 AA_GPN1APN2:U11C12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A APN 2 1_555 B U 5 1_555 A APN 3 1_555 B U 4 1_555 0.231 -2.137 3.294 -4.117 10.272 26.893 -6.263 -1.263 2.281 20.994 8.413 29.042 2 AA_APN2APN3:U10U11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A APN 3 1_555 B U 4 1_555 A CPN 4 1_555 B G 3 1_555 -0.162 -1.572 3.152 -0.694 -2.093 29.615 -2.635 0.173 3.255 -4.087 1.355 29.695 3 AA_APN3CPN4:G9U10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A CPN 4 1_555 B G 3 1_555 A TPN 5 1_555 B A 2 1_555 0.538 -0.734 3.316 -3.658 5.170 32.096 -2.186 -1.581 3.085 9.238 6.537 32.698 4 AA_CPN4TPN5:A8G9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A TPN 5 1_555 B A 2 1_555 A CPN 6 1_555 B G 1 1_555 0.779 -2.170 3.983 -2.976 1.999 35.384 -3.900 -1.793 3.783 3.278 4.881 35.559 5 AA_TPN5CPN6:G7A8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 176D _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_