data_182D # _entry.id 182D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 182D pdb_0000182d 10.2210/pdb182d/pdb RCSB DDF049 ? ? WWPDB D_1000170183 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-11-30 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' diffrn_source 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 182D _pdbx_database_status.recvd_initial_deposition_date 1994-07-28 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Smith, C.K.' 1 'Davies, G.J.' 2 'Dodson, E.J.' 3 'Moore, M.H.' 4 # _citation.id primary _citation.title 'DNA-nogalamycin interactions: the crystal structure of d(TGATCA) complexed with nogalamycin.' _citation.journal_abbrev Biochemistry _citation.journal_volume 34 _citation.page_first 415 _citation.page_last 425 _citation.year 1995 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7819233 _citation.pdbx_database_id_DOI 10.1021/bi00002a005 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Smith, C.K.' 1 ? primary 'Davies, G.J.' 2 ? primary 'Dodson, E.J.' 3 ? primary 'Moore, M.H.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*AP*TP*CP*A)-3') ; 1808.229 2 ? ? ? ? 2 non-polymer syn NOGALAMYCIN 787.803 2 ? ? ? ? 3 water nat water 18.015 115 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DA)(DT)(DC)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TGATCA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 NOGALAMYCIN NGM 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DA n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NGM non-polymer . NOGALAMYCIN ? 'C39 H49 N O16' 787.803 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DA 6 6 6 DA A A . n B 1 1 DT 1 7 7 DT T B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DA 3 9 9 DA A B . n B 1 4 DT 4 10 10 DT T B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DA 6 12 12 DA A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NGM 1 14 14 NGM NGM A . D 2 NGM 1 13 13 NGM NGM B . E 3 HOH 1 15 15 HOH HOH A . E 3 HOH 2 16 16 HOH HOH A . E 3 HOH 3 20 20 HOH HOH A . E 3 HOH 4 21 21 HOH HOH A . E 3 HOH 5 29 29 HOH HOH A . E 3 HOH 6 30 30 HOH HOH A . E 3 HOH 7 31 31 HOH HOH A . E 3 HOH 8 32 32 HOH HOH A . E 3 HOH 9 42 42 HOH HOH A . E 3 HOH 10 43 43 HOH HOH A . E 3 HOH 11 44 44 HOH HOH A . E 3 HOH 12 45 45 HOH HOH A . E 3 HOH 13 46 46 HOH HOH A . E 3 HOH 14 49 49 HOH HOH A . E 3 HOH 15 53 53 HOH HOH A . E 3 HOH 16 54 54 HOH HOH A . E 3 HOH 17 55 55 HOH HOH A . E 3 HOH 18 56 56 HOH HOH A . E 3 HOH 19 57 57 HOH HOH A . E 3 HOH 20 59 59 HOH HOH A . E 3 HOH 21 60 60 HOH HOH A . E 3 HOH 22 61 61 HOH HOH A . E 3 HOH 23 62 62 HOH HOH A . E 3 HOH 24 64 64 HOH HOH A . E 3 HOH 25 65 65 HOH HOH A . E 3 HOH 26 66 66 HOH HOH A . E 3 HOH 27 67 67 HOH HOH A . E 3 HOH 28 68 68 HOH HOH A . E 3 HOH 29 69 69 HOH HOH A . E 3 HOH 30 70 70 HOH HOH A . E 3 HOH 31 73 73 HOH HOH A . E 3 HOH 32 80 80 HOH HOH A . E 3 HOH 33 82 82 HOH HOH A . E 3 HOH 34 84 84 HOH HOH A . E 3 HOH 35 85 85 HOH HOH A . E 3 HOH 36 87 87 HOH HOH A . E 3 HOH 37 88 88 HOH HOH A . E 3 HOH 38 89 89 HOH HOH A . E 3 HOH 39 93 93 HOH HOH A . E 3 HOH 40 94 94 HOH HOH A . E 3 HOH 41 95 95 HOH HOH A . E 3 HOH 42 98 98 HOH HOH A . E 3 HOH 43 100 100 HOH HOH A . E 3 HOH 44 102 102 HOH HOH A . E 3 HOH 45 107 107 HOH HOH A . E 3 HOH 46 109 109 HOH HOH A . E 3 HOH 47 110 110 HOH HOH A . E 3 HOH 48 113 113 HOH HOH A . E 3 HOH 49 114 114 HOH HOH A . E 3 HOH 50 115 115 HOH HOH A . E 3 HOH 51 116 116 HOH HOH A . E 3 HOH 52 117 117 HOH HOH A . E 3 HOH 53 120 120 HOH HOH A . E 3 HOH 54 122 122 HOH HOH A . E 3 HOH 55 123 123 HOH HOH A . E 3 HOH 56 127 127 HOH HOH A . F 3 HOH 1 17 17 HOH HOH B . F 3 HOH 2 18 18 HOH HOH B . F 3 HOH 3 19 19 HOH HOH B . F 3 HOH 4 22 22 HOH HOH B . F 3 HOH 5 23 23 HOH HOH B . F 3 HOH 6 24 24 HOH HOH B . F 3 HOH 7 25 25 HOH HOH B . F 3 HOH 8 26 26 HOH HOH B . F 3 HOH 9 27 27 HOH HOH B . F 3 HOH 10 28 28 HOH HOH B . F 3 HOH 11 33 33 HOH HOH B . F 3 HOH 12 34 34 HOH HOH B . F 3 HOH 13 35 35 HOH HOH B . F 3 HOH 14 36 36 HOH HOH B . F 3 HOH 15 37 37 HOH HOH B . F 3 HOH 16 38 38 HOH HOH B . F 3 HOH 17 39 39 HOH HOH B . F 3 HOH 18 40 40 HOH HOH B . F 3 HOH 19 41 41 HOH HOH B . F 3 HOH 20 47 47 HOH HOH B . F 3 HOH 21 48 48 HOH HOH B . F 3 HOH 22 50 50 HOH HOH B . F 3 HOH 23 51 51 HOH HOH B . F 3 HOH 24 52 52 HOH HOH B . F 3 HOH 25 58 58 HOH HOH B . F 3 HOH 26 63 63 HOH HOH B . F 3 HOH 27 71 71 HOH HOH B . F 3 HOH 28 72 72 HOH HOH B . F 3 HOH 29 74 74 HOH HOH B . F 3 HOH 30 75 75 HOH HOH B . F 3 HOH 31 76 76 HOH HOH B . F 3 HOH 32 77 77 HOH HOH B . F 3 HOH 33 78 78 HOH HOH B . F 3 HOH 34 79 79 HOH HOH B . F 3 HOH 35 81 81 HOH HOH B . F 3 HOH 36 83 83 HOH HOH B . F 3 HOH 37 86 86 HOH HOH B . F 3 HOH 38 90 90 HOH HOH B . F 3 HOH 39 91 91 HOH HOH B . F 3 HOH 40 92 92 HOH HOH B . F 3 HOH 41 96 96 HOH HOH B . F 3 HOH 42 97 97 HOH HOH B . F 3 HOH 43 99 99 HOH HOH B . F 3 HOH 44 101 101 HOH HOH B . F 3 HOH 45 103 103 HOH HOH B . F 3 HOH 46 104 104 HOH HOH B . F 3 HOH 47 105 105 HOH HOH B . F 3 HOH 48 106 106 HOH HOH B . F 3 HOH 49 108 108 HOH HOH B . F 3 HOH 50 111 111 HOH HOH B . F 3 HOH 51 112 112 HOH HOH B . F 3 HOH 52 118 118 HOH HOH B . F 3 HOH 53 119 119 HOH HOH B . F 3 HOH 54 121 121 HOH HOH B . F 3 HOH 55 124 124 HOH HOH B . F 3 HOH 56 125 125 HOH HOH B . F 3 HOH 57 126 126 HOH HOH B . F 3 HOH 58 128 128 HOH HOH B . F 3 HOH 59 129 129 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DA 6 ? "O3'" ? A DA 6 "O3'" 2 1 Y 1 B DA 12 ? "O5'" ? B DA 6 "O5'" # _software.name PROLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 182D _cell.length_a 37.200 _cell.length_b 37.200 _cell.length_c 70.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 182D _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 182D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.24 _exptl_crystal.density_percent_sol 48.0000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 SPERMINE ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 277.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type HENDRIX-LENTFER _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X31' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X31 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 182D _reflns.observed_criterion_sigma_I 3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.800 _reflns.number_obs 4953 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 182D _refine.ls_number_reflns_obs 4767 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 1.800 _refine.ls_percent_reflns_obs 81.000 _refine.ls_R_factor_obs 0.1950000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.3000000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 30.00 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 238 _refine_hist.pdbx_number_atoms_ligand 112 _refine_hist.number_atoms_solvent 115 _refine_hist.number_atoms_total 465 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.020 0.020 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.076 0.050 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.025 0.020 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.037 0.060 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 182D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 182D _struct.title 'DNA-NOGALAMYCIN INTERACTIONS: THE CRYSTAL STRUCTURE OF D(TGATCA) COMPLEXED WITH NOGALAMYCIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 182D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 182D _struct_ref.pdbx_db_accession 182D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 182D A 1 ? 6 ? 182D 1 ? 6 ? 1 6 2 1 182D B 1 ? 6 ? 182D 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 1 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 1 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 3 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 3 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NGM 13 ? 14 'BINDING SITE FOR RESIDUE NGM B 13' AC2 Software A NGM 14 ? 10 'BINDING SITE FOR RESIDUE NGM A 14' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 DT A 1 ? DT A 1 . ? 6_555 ? 2 AC1 14 DG A 2 ? DG A 2 . ? 6_555 ? 3 AC1 14 DC A 5 ? DC A 5 . ? 1_555 ? 4 AC1 14 DA A 6 ? DA A 6 . ? 1_555 ? 5 AC1 14 DT B 1 ? DT B 7 . ? 1_555 ? 6 AC1 14 DG B 2 ? DG B 8 . ? 1_555 ? 7 AC1 14 DA B 3 ? DA B 9 . ? 1_555 ? 8 AC1 14 DT B 4 ? DT B 10 . ? 1_555 ? 9 AC1 14 HOH F . ? HOH B 50 . ? 1_555 ? 10 AC1 14 HOH F . ? HOH B 52 . ? 1_555 ? 11 AC1 14 HOH F . ? HOH B 58 . ? 1_555 ? 12 AC1 14 HOH F . ? HOH B 75 . ? 1_555 ? 13 AC1 14 HOH F . ? HOH B 76 . ? 4_554 ? 14 AC1 14 HOH F . ? HOH B 81 . ? 1_555 ? 15 AC2 10 DT A 1 ? DT A 1 . ? 1_555 ? 16 AC2 10 DG A 2 ? DG A 2 . ? 1_555 ? 17 AC2 10 DA A 3 ? DA A 3 . ? 1_555 ? 18 AC2 10 DT A 4 ? DT A 4 . ? 1_555 ? 19 AC2 10 HOH E . ? HOH A 21 . ? 1_555 ? 20 AC2 10 HOH E . ? HOH A 43 . ? 1_555 ? 21 AC2 10 HOH E . ? HOH A 94 . ? 1_555 ? 22 AC2 10 DC B 5 ? DC B 11 . ? 1_555 ? 23 AC2 10 DA B 6 ? DA B 12 . ? 1_555 ? 24 AC2 10 HOH F . ? HOH B 48 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP1 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 DT _pdbx_validate_close_contact.auth_seq_id_1 10 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 105 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.04 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DT 1 ? ? C7 A DT 1 ? ? 1.307 1.496 -0.189 0.006 N 2 1 "O3'" A DT 1 ? ? P A DG 2 ? ? 1.698 1.607 0.091 0.012 Y 3 1 "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.595 1.519 0.076 0.010 N 4 1 N3 A DG 2 ? ? C4 A DG 2 ? ? 1.393 1.350 0.043 0.007 N 5 1 C5 A DA 3 ? ? N7 A DA 3 ? ? 1.427 1.388 0.039 0.006 N 6 1 "O3'" A DA 3 ? ? P A DT 4 ? ? 1.682 1.607 0.075 0.012 Y 7 1 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.396 1.496 -0.100 0.006 N 8 1 "O3'" A DT 4 ? ? P A DC 5 ? ? 1.691 1.607 0.084 0.012 Y 9 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.372 1.446 -0.074 0.010 N 10 1 "O3'" A DC 5 ? ? P A DA 6 ? ? 1.709 1.607 0.102 0.012 Y 11 1 "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? 1.384 1.446 -0.062 0.010 N 12 1 C5 B DT 7 ? ? C7 B DT 7 ? ? 1.611 1.496 0.115 0.006 N 13 1 "O3'" B DT 7 ? ? P B DG 8 ? ? 1.709 1.607 0.102 0.012 Y 14 1 "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.582 1.519 0.063 0.010 N 15 1 "O3'" B DA 9 ? ? P B DT 10 ? ? 1.723 1.607 0.116 0.012 Y 16 1 "O4'" B DT 10 ? ? "C4'" B DT 10 ? ? 1.378 1.446 -0.068 0.010 N 17 1 C5 B DT 10 ? ? C7 B DT 10 ? ? 1.605 1.496 0.109 0.006 N 18 1 "O3'" B DT 10 ? ? P B DC 11 ? ? 1.722 1.607 0.115 0.012 Y 19 1 "O3'" B DC 11 ? ? P B DA 12 ? ? 1.725 1.607 0.118 0.012 Y 20 1 C5 B DA 12 ? ? N7 B DA 12 ? ? 1.426 1.388 0.038 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A DT 1 ? ? N1 A DT 1 ? ? C2 A DT 1 ? ? 125.11 121.30 3.81 0.50 N 2 1 C2 A DT 1 ? ? N3 A DT 1 ? ? C4 A DT 1 ? ? 119.84 127.20 -7.36 0.60 N 3 1 N3 A DT 1 ? ? C4 A DT 1 ? ? C5 A DT 1 ? ? 123.43 115.20 8.23 0.60 N 4 1 C5 A DT 1 ? ? C6 A DT 1 ? ? N1 A DT 1 ? ? 117.78 123.70 -5.92 0.60 N 5 1 C5 A DT 1 ? ? C4 A DT 1 ? ? O4 A DT 1 ? ? 117.85 124.90 -7.05 0.70 N 6 1 C4 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 114.48 119.00 -4.52 0.60 N 7 1 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 128.03 122.90 5.13 0.60 N 8 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 130.23 119.60 10.63 1.50 N 9 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP1 A DG 2 ? ? 99.88 105.70 -5.82 0.90 N 10 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 100.71 105.90 -5.19 0.80 N 11 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 118.08 108.30 9.78 0.30 N 12 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 105.95 111.90 -5.95 0.50 N 13 1 N3 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 132.19 128.60 3.59 0.50 N 14 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 108.92 106.40 2.52 0.40 N 15 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DA 3 ? ? 130.11 119.70 10.41 1.20 Y 16 1 "O5'" A DA 3 ? ? P A DA 3 ? ? OP2 A DA 3 ? ? 120.20 110.70 9.50 1.20 N 17 1 "C5'" A DA 3 ? ? "C4'" A DA 3 ? ? "O4'" A DA 3 ? ? 116.82 109.80 7.02 1.10 N 18 1 C6 A DA 3 ? ? N1 A DA 3 ? ? C2 A DA 3 ? ? 129.98 118.60 11.38 0.60 N 19 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 125.36 129.30 -3.94 0.50 N 20 1 C2 A DA 3 ? ? N3 A DA 3 ? ? C4 A DA 3 ? ? 103.39 110.60 -7.21 0.50 N 21 1 N3 A DA 3 ? ? C4 A DA 3 ? ? C5 A DA 3 ? ? 135.65 126.80 8.85 0.70 N 22 1 C5 A DA 3 ? ? C6 A DA 3 ? ? N1 A DA 3 ? ? 107.98 117.70 -9.72 0.50 N 23 1 C4 A DA 3 ? ? C5 A DA 3 ? ? N7 A DA 3 ? ? 114.21 110.70 3.51 0.50 N 24 1 C5 A DA 3 ? ? N7 A DA 3 ? ? C8 A DA 3 ? ? 98.98 103.90 -4.92 0.50 N 25 1 N9 A DA 3 ? ? C4 A DA 3 ? ? C5 A DA 3 ? ? 103.34 105.80 -2.46 0.40 N 26 1 N3 A DA 3 ? ? C4 A DA 3 ? ? N9 A DA 3 ? ? 121.02 127.40 -6.38 0.80 N 27 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 126.26 118.60 7.66 0.60 N 28 1 "O5'" A DT 4 ? ? "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 102.30 109.40 -7.10 0.80 N 29 1 C6 A DT 4 ? ? N1 A DT 4 ? ? C2 A DT 4 ? ? 127.14 121.30 5.84 0.50 N 30 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 119.48 127.20 -7.72 0.60 N 31 1 N3 A DT 4 ? ? C4 A DT 4 ? ? C5 A DT 4 ? ? 124.78 115.20 9.58 0.60 N 32 1 C5 A DT 4 ? ? C6 A DT 4 ? ? N1 A DT 4 ? ? 117.30 123.70 -6.40 0.60 N 33 1 N3 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 113.87 119.90 -6.03 0.60 N 34 1 C4 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 132.04 119.00 13.04 0.60 N 35 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 111.18 122.90 -11.72 0.60 N 36 1 OP1 A DC 5 ? ? P A DC 5 ? ? OP2 A DC 5 ? ? 131.35 119.60 11.75 1.50 N 37 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 97.35 102.40 -5.05 0.80 N 38 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 117.19 108.30 8.89 0.30 N 39 1 C6 A DC 5 ? ? N1 A DC 5 ? ? C2 A DC 5 ? ? 123.42 120.30 3.12 0.40 N 40 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 122.76 118.60 4.16 0.60 N 41 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 113.90 117.70 -3.80 0.50 N 42 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 125.27 118.60 6.67 0.60 N 43 1 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 111.49 108.30 3.19 0.30 N 44 1 N1 B DT 7 ? ? C2 B DT 7 ? ? N3 B DT 7 ? ? 118.20 114.60 3.60 0.60 N 45 1 C2 B DT 7 ? ? N3 B DT 7 ? ? C4 B DT 7 ? ? 121.56 127.20 -5.64 0.60 N 46 1 N3 B DT 7 ? ? C4 B DT 7 ? ? C5 B DT 7 ? ? 120.20 115.20 5.00 0.60 N 47 1 C5 B DT 7 ? ? C6 B DT 7 ? ? N1 B DT 7 ? ? 119.83 123.70 -3.87 0.60 N 48 1 N1 B DT 7 ? ? C2 B DT 7 ? ? O2 B DT 7 ? ? 116.95 123.10 -6.15 0.80 N 49 1 C5 B DT 7 ? ? C4 B DT 7 ? ? O4 B DT 7 ? ? 120.40 124.90 -4.50 0.70 N 50 1 C4 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 125.66 119.00 6.66 0.60 N 51 1 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 115.35 122.90 -7.55 0.60 N 52 1 "O5'" B DG 8 ? ? "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? 97.27 109.40 -12.13 0.80 N 53 1 "C1'" B DG 8 ? ? "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? 100.66 110.10 -9.44 1.00 N 54 1 "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? "O3'" B DG 8 ? ? 92.70 109.70 -17.00 2.50 N 55 1 "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 94.75 102.40 -7.65 0.80 N 56 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? "C2'" B DG 8 ? ? 109.95 106.80 3.15 0.50 N 57 1 C5 B DG 8 ? ? N7 B DG 8 ? ? C8 B DG 8 ? ? 109.35 104.30 5.05 0.50 N 58 1 N7 B DG 8 ? ? C8 B DG 8 ? ? N9 B DG 8 ? ? 106.13 113.10 -6.97 0.50 N 59 1 C8 B DG 8 ? ? N9 B DG 8 ? ? C4 B DG 8 ? ? 111.40 106.40 5.00 0.40 N 60 1 N1 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 125.26 119.90 5.36 0.60 N 61 1 "C3'" B DG 8 ? ? "O3'" B DG 8 ? ? P B DA 9 ? ? 128.35 119.70 8.65 1.20 Y 62 1 "O5'" B DA 9 ? ? "C5'" B DA 9 ? ? "C4'" B DA 9 ? ? 104.11 109.40 -5.29 0.80 N 63 1 N1 B DA 9 ? ? C6 B DA 9 ? ? N6 B DA 9 ? ? 123.69 118.60 5.09 0.60 N 64 1 "C3'" B DA 9 ? ? "O3'" B DA 9 ? ? P B DT 10 ? ? 111.28 119.70 -8.42 1.20 Y 65 1 "O5'" B DT 10 ? ? P B DT 10 ? ? OP2 B DT 10 ? ? 124.03 110.70 13.33 1.20 N 66 1 "O5'" B DT 10 ? ? "C5'" B DT 10 ? ? "C4'" B DT 10 ? ? 102.18 109.40 -7.22 0.80 N 67 1 C6 B DT 10 ? ? N1 B DT 10 ? ? C2 B DT 10 ? ? 125.35 121.30 4.05 0.50 N 68 1 N3 B DT 10 ? ? C4 B DT 10 ? ? C5 B DT 10 ? ? 118.82 115.20 3.62 0.60 N 69 1 C5 B DT 10 ? ? C6 B DT 10 ? ? N1 B DT 10 ? ? 118.56 123.70 -5.14 0.60 N 70 1 C4 B DT 10 ? ? C5 B DT 10 ? ? C7 B DT 10 ? ? 129.88 119.00 10.88 0.60 N 71 1 C6 B DT 10 ? ? C5 B DT 10 ? ? C7 B DT 10 ? ? 111.47 122.90 -11.43 0.60 N 72 1 "O5'" B DC 11 ? ? "C5'" B DC 11 ? ? "C4'" B DC 11 ? ? 99.99 109.40 -9.41 0.80 N 73 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 117.54 108.30 9.24 0.30 N 74 1 C6 B DC 11 ? ? N1 B DC 11 ? ? C2 B DC 11 ? ? 117.55 120.30 -2.75 0.40 N 75 1 C2 B DC 11 ? ? N3 B DC 11 ? ? C4 B DC 11 ? ? 125.86 119.90 5.96 0.50 N 76 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 119.28 121.90 -2.62 0.40 N 77 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 114.18 117.40 -3.22 0.50 N 78 1 C5 B DC 11 ? ? C6 B DC 11 ? ? N1 B DC 11 ? ? 127.51 121.00 6.51 0.50 N 79 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 112.89 118.90 -6.01 0.60 N 80 1 N3 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 131.52 121.90 9.62 0.70 N 81 1 N3 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 125.68 118.00 7.68 0.70 N 82 1 C5 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 115.03 120.20 -5.17 0.70 N 83 1 C6 B DC 11 ? ? N1 B DC 11 ? ? "C1'" B DC 11 ? ? 128.07 120.80 7.27 1.20 N 84 1 OP1 B DA 12 ? ? P B DA 12 ? ? OP2 B DA 12 ? ? 110.47 119.60 -9.13 1.50 N 85 1 "C5'" B DA 12 ? ? "C4'" B DA 12 ? ? "O4'" B DA 12 ? ? 116.71 109.80 6.91 1.10 N 86 1 C6 B DA 12 ? ? N1 B DA 12 ? ? C2 B DA 12 ? ? 126.34 118.60 7.74 0.60 N 87 1 N1 B DA 12 ? ? C2 B DA 12 ? ? N3 B DA 12 ? ? 122.37 129.30 -6.93 0.50 N 88 1 C5 B DA 12 ? ? C6 B DA 12 ? ? N1 B DA 12 ? ? 113.65 117.70 -4.05 0.50 N 89 1 C5 B DA 12 ? ? N7 B DA 12 ? ? C8 B DA 12 ? ? 100.00 103.90 -3.90 0.50 N 90 1 N1 B DA 12 ? ? C6 B DA 12 ? ? N6 B DA 12 ? ? 126.44 118.60 7.84 0.60 N # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C32 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id NGM _pdbx_validate_chiral.auth_seq_id 14 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 NGM C1 C Y N 147 NGM C2 C Y N 148 NGM C3 C Y N 149 NGM C4 C Y N 150 NGM C5 C N N 151 NGM C6 C Y N 152 NGM C7 C N S 153 NGM C8 C N N 154 NGM C9 C N S 155 NGM C10 C N R 156 NGM C11 C Y N 157 NGM C12 C N N 158 NGM C13 C N N 159 NGM C14 C N N 160 NGM C15 C N N 161 NGM C16 C Y N 162 NGM C17 C Y N 163 NGM C18 C Y N 164 NGM C19 C Y N 165 NGM C20 C Y N 166 NGM C21 C Y N 167 NGM C22 C N N 168 NGM C23 C N N 169 NGM C24 C N N 170 NGM C25 C N N 171 NGM C26 C N N 172 NGM C27 C N N 173 NGM C28 C N N 174 NGM C29 C N N 175 NGM C30 C N S 176 NGM C31 C N S 177 NGM C32 C N R 178 NGM C33 C N R 179 NGM C34 C N R 180 NGM "C1'" C N R 181 NGM "C2'" C N R 182 NGM "C3'" C N R 183 NGM "C4'" C N S 184 NGM "C5'" C N S 185 NGM N1 N N N 186 NGM O1 O N N 187 NGM O2 O N N 188 NGM O4 O N N 189 NGM O5 O N N 190 NGM O6 O N N 191 NGM O7 O N N 192 NGM O9 O N N 193 NGM O10 O N N 194 NGM O14 O N N 195 NGM O12 O N N 196 NGM O15 O N N 197 NGM O16 O N N 198 NGM "O1'" O N N 199 NGM "O2'" O N N 200 NGM "O3'" O N N 201 NGM "O4'" O N N 202 NGM H3 H N N 203 NGM H7 H N N 204 NGM H81 H N N 205 NGM H82 H N N 206 NGM H10 H N N 207 NGM H11 H N N 208 NGM H131 H N N 209 NGM H132 H N N 210 NGM H133 H N N 211 NGM H151 H N N 212 NGM H152 H N N 213 NGM H153 H N N 214 NGM H221 H N N 215 NGM H222 H N N 216 NGM H223 H N N 217 NGM H231 H N N 218 NGM H232 H N N 219 NGM H233 H N N 220 NGM H241 H N N 221 NGM H242 H N N 222 NGM H243 H N N 223 NGM H251 H N N 224 NGM H252 H N N 225 NGM H253 H N N 226 NGM H261 H N N 227 NGM H262 H N N 228 NGM H263 H N N 229 NGM H271 H N N 230 NGM H272 H N N 231 NGM H273 H N N 232 NGM H281 H N N 233 NGM H282 H N N 234 NGM H283 H N N 235 NGM H291 H N N 236 NGM H292 H N N 237 NGM H293 H N N 238 NGM H30 H N N 239 NGM H31 H N N 240 NGM H32 H N N 241 NGM H33 H N N 242 NGM "H1'" H N N 243 NGM "H2'" H N N 244 NGM "H4'" H N N 245 NGM "H5'" H N N 246 NGM HO4 H N N 247 NGM HO6 H N N 248 NGM HO9 H N N 249 NGM H15 H N N 250 NGM H16 H N N 251 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 NGM C1 C2 doub Y N 152 NGM C1 C16 sing Y N 153 NGM C1 O1 sing N N 154 NGM C2 C3 sing Y N 155 NGM C2 C34 sing N N 156 NGM C3 C4 doub Y N 157 NGM C3 H3 sing N N 158 NGM C4 C17 sing Y N 159 NGM C4 O4 sing N N 160 NGM C5 C17 sing N N 161 NGM C5 C18 sing N N 162 NGM C5 O5 doub N N 163 NGM C6 C18 doub Y N 164 NGM C6 C19 sing Y N 165 NGM C6 O6 sing N N 166 NGM C7 C8 sing N N 167 NGM C7 C19 sing N N 168 NGM C7 O7 sing N N 169 NGM C7 H7 sing N N 170 NGM C8 C9 sing N N 171 NGM C8 H81 sing N N 172 NGM C8 H82 sing N N 173 NGM C9 C10 sing N N 174 NGM C9 C13 sing N N 175 NGM C9 O9 sing N N 176 NGM C10 C14 sing N N 177 NGM C10 C20 sing N N 178 NGM C10 H10 sing N N 179 NGM C11 C20 sing Y N 180 NGM C11 C21 doub Y N 181 NGM C11 H11 sing N N 182 NGM C12 C16 sing N N 183 NGM C12 C21 sing N N 184 NGM C12 O12 doub N N 185 NGM C13 H131 sing N N 186 NGM C13 H132 sing N N 187 NGM C13 H133 sing N N 188 NGM C14 O10 sing N N 189 NGM C14 O14 doub N N 190 NGM C15 O10 sing N N 191 NGM C15 H151 sing N N 192 NGM C15 H152 sing N N 193 NGM C15 H153 sing N N 194 NGM C16 C17 doub Y N 195 NGM C18 C21 sing Y N 196 NGM C19 C20 doub Y N 197 NGM C22 C34 sing N N 198 NGM C22 H221 sing N N 199 NGM C22 H222 sing N N 200 NGM C22 H223 sing N N 201 NGM C23 N1 sing N N 202 NGM C23 H231 sing N N 203 NGM C23 H232 sing N N 204 NGM C23 H233 sing N N 205 NGM C24 N1 sing N N 206 NGM C24 H241 sing N N 207 NGM C24 H242 sing N N 208 NGM C24 H243 sing N N 209 NGM C25 "C5'" sing N N 210 NGM C25 H251 sing N N 211 NGM C25 H252 sing N N 212 NGM C25 H253 sing N N 213 NGM C26 "O4'" sing N N 214 NGM C26 H261 sing N N 215 NGM C26 H262 sing N N 216 NGM C26 H263 sing N N 217 NGM C27 "O3'" sing N N 218 NGM C27 H271 sing N N 219 NGM C27 H272 sing N N 220 NGM C27 H273 sing N N 221 NGM C28 "C3'" sing N N 222 NGM C28 H281 sing N N 223 NGM C28 H282 sing N N 224 NGM C28 H283 sing N N 225 NGM C29 "O2'" sing N N 226 NGM C29 H291 sing N N 227 NGM C29 H292 sing N N 228 NGM C29 H293 sing N N 229 NGM C30 C31 sing N N 230 NGM C30 O1 sing N N 231 NGM C30 O2 sing N N 232 NGM C30 H30 sing N N 233 NGM C31 C32 sing N N 234 NGM C31 O15 sing N N 235 NGM C31 H31 sing N N 236 NGM C32 C33 sing N N 237 NGM C32 N1 sing N N 238 NGM C32 H32 sing N N 239 NGM C33 C34 sing N N 240 NGM C33 O16 sing N N 241 NGM C33 H33 sing N N 242 NGM C34 O2 sing N N 243 NGM "C1'" "C2'" sing N N 244 NGM "C1'" O7 sing N N 245 NGM "C1'" "O1'" sing N N 246 NGM "C1'" "H1'" sing N N 247 NGM "C2'" "C3'" sing N N 248 NGM "C2'" "O2'" sing N N 249 NGM "C2'" "H2'" sing N N 250 NGM "C3'" "C4'" sing N N 251 NGM "C3'" "O3'" sing N N 252 NGM "C4'" "C5'" sing N N 253 NGM "C4'" "O4'" sing N N 254 NGM "C4'" "H4'" sing N N 255 NGM "C5'" "O1'" sing N N 256 NGM "C5'" "H5'" sing N N 257 NGM O4 HO4 sing N N 258 NGM O6 HO6 sing N N 259 NGM O9 HO9 sing N N 260 NGM O15 H15 sing N N 261 NGM O16 H16 sing N N 262 # _ndb_struct_conf_na.entry_id 182D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 6 1_555 -0.058 -0.164 -0.126 12.049 0.562 2.851 1 A_DT1:DA12_B A 1 ? B 12 ? 20 1 1 A DG 2 1_555 B DC 5 1_555 -0.388 -0.256 -0.426 -25.174 4.748 -2.837 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DA 3 1_555 B DT 4 1_555 -0.052 -0.129 0.169 -4.397 -2.558 1.912 3 A_DA3:DT10_B A 3 ? B 10 ? 20 1 1 A DT 4 1_555 B DA 3 1_555 0.004 -0.219 -0.117 6.232 -3.333 1.069 4 A_DT4:DA9_B A 4 ? B 9 ? 20 1 1 A DC 5 1_555 B DG 2 1_555 0.409 -0.234 -0.464 25.194 2.613 -0.285 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DA 6 1_555 B DT 1 1_555 0.016 -0.232 0.149 -8.038 1.824 -1.342 6 A_DA6:DT7_B A 6 ? B 7 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 6 1_555 A DG 2 1_555 B DC 5 1_555 1.341 0.233 7.140 11.130 1.328 30.701 -0.106 1.982 7.183 2.410 -20.195 32.636 1 AA_DT1DG2:DC11DA12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DA 3 1_555 B DT 4 1_555 -0.440 0.386 3.013 -5.290 3.077 30.211 0.163 -0.142 3.068 5.828 10.020 30.811 2 AA_DG2DA3:DT10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DA 3 1_555 B DT 4 1_555 A DT 4 1_555 B DA 3 1_555 0.049 -0.678 3.240 2.496 -6.521 33.071 -0.099 0.325 3.305 -11.300 -4.325 33.780 3 AA_DA3DT4:DA9DT10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DT 4 1_555 B DA 3 1_555 A DC 5 1_555 B DG 2 1_555 0.423 0.433 3.069 4.322 5.719 30.121 -0.250 0.010 3.125 10.812 -8.171 30.943 4 AA_DT4DC5:DG8DA9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DA 6 1_555 B DT 1 1_555 -1.249 0.307 7.049 -13.712 -2.441 33.821 1.245 -2.242 6.983 -3.992 22.425 36.499 5 AA_DC5DA6:DT7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 182D _atom_sites.fract_transf_matrix[1][1] 0.026880 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026880 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014270 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_