data_190D # _entry.id 190D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 190D pdb_0000190d 10.2210/pdb190d/pdb RCSB UDD024 ? ? WWPDB D_1000170200 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-02-07 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 190D _pdbx_database_status.recvd_initial_deposition_date 1994-09-02 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, L.' 1 'Cai, L.' 2 'Zhang, X.' 3 'Rich, A.' 4 # _citation.id primary _citation.title 'Crystal structure of a four-stranded intercalated DNA: d(C4).' _citation.journal_abbrev Biochemistry _citation.journal_volume 33 _citation.page_first 13540 _citation.page_last 13546 _citation.year 1994 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7947764 _citation.pdbx_database_id_DOI 10.1021/bi00250a005 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, L.' 1 ? primary 'Cai, L.' 2 ? primary 'Zhang, X.' 3 ? primary 'Rich, A.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*CP*C)-3') ; 1111.770 8 ? ? ? ? 2 water nat water 18.015 46 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DC)(DC)' _entity_poly.pdbx_seq_one_letter_code_can CCCC _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DC n 1 4 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DC 4 4 4 DC C A . n B 1 1 DC 1 5 5 DC C B . n B 1 2 DC 2 6 6 DC C B . n B 1 3 DC 3 7 7 DC C B . n B 1 4 DC 4 8 8 DC C B . n C 1 1 DC 1 9 9 DC C C . n C 1 2 DC 2 10 10 DC C C . n C 1 3 DC 3 11 11 DC C C . n C 1 4 DC 4 12 12 DC C C . n D 1 1 DC 1 13 13 DC C D . n D 1 2 DC 2 14 14 DC C D . n D 1 3 DC 3 15 15 DC C D . n D 1 4 DC 4 16 16 DC C D . n E 1 1 DC 1 17 17 DC C E . n E 1 2 DC 2 18 18 DC C E . n E 1 3 DC 3 19 19 DC C E . n E 1 4 DC 4 20 20 DC C E . n F 1 1 DC 1 21 21 DC C F . n F 1 2 DC 2 22 22 DC C F . n F 1 3 DC 3 23 23 DC C F . n F 1 4 DC 4 24 24 DC C F . n G 1 1 DC 1 25 25 DC C G . n G 1 2 DC 2 26 26 DC C G . n G 1 3 DC 3 27 27 DC C G . n G 1 4 DC 4 28 28 DC C G . n H 1 1 DC 1 29 29 DC C H . n H 1 2 DC 2 30 30 DC C H . n H 1 3 DC 3 31 31 DC C H . n H 1 4 DC 4 32 32 DC C H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 HOH 1 33 33 HOH HOH A . I 2 HOH 2 48 48 HOH HOH A . I 2 HOH 3 49 49 HOH HOH A . I 2 HOH 4 53 53 HOH HOH A . I 2 HOH 5 66 66 HOH HOH A . I 2 HOH 6 72 72 HOH HOH A . I 2 HOH 7 73 73 HOH HOH A . J 2 HOH 1 34 34 HOH HOH B . J 2 HOH 2 41 41 HOH HOH B . J 2 HOH 3 58 58 HOH HOH B . J 2 HOH 4 68 68 HOH HOH B . J 2 HOH 5 71 71 HOH HOH B . J 2 HOH 6 77 77 HOH HOH B . K 2 HOH 1 42 42 HOH HOH C . K 2 HOH 2 46 46 HOH HOH C . K 2 HOH 3 55 55 HOH HOH C . K 2 HOH 4 57 57 HOH HOH C . K 2 HOH 5 69 69 HOH HOH C . L 2 HOH 1 35 35 HOH HOH D . L 2 HOH 2 36 36 HOH HOH D . L 2 HOH 3 37 37 HOH HOH D . L 2 HOH 4 38 38 HOH HOH D . L 2 HOH 5 39 39 HOH HOH D . L 2 HOH 6 40 40 HOH HOH D . L 2 HOH 7 43 43 HOH HOH D . L 2 HOH 8 44 44 HOH HOH D . L 2 HOH 9 45 45 HOH HOH D . L 2 HOH 10 50 50 HOH HOH D . L 2 HOH 11 54 54 HOH HOH D . L 2 HOH 12 56 56 HOH HOH D . L 2 HOH 13 67 67 HOH HOH D . L 2 HOH 14 70 70 HOH HOH D . M 2 HOH 1 47 47 HOH HOH E . M 2 HOH 2 52 52 HOH HOH E . M 2 HOH 3 60 60 HOH HOH E . M 2 HOH 4 61 61 HOH HOH E . M 2 HOH 5 62 62 HOH HOH E . M 2 HOH 6 64 64 HOH HOH E . M 2 HOH 7 65 65 HOH HOH E . M 2 HOH 8 76 76 HOH HOH E . N 2 HOH 1 75 75 HOH HOH F . O 2 HOH 1 51 51 HOH HOH G . O 2 HOH 2 74 74 HOH HOH G . P 2 HOH 1 59 59 HOH HOH H . P 2 HOH 2 63 63 HOH HOH H . P 2 HOH 3 78 78 HOH HOH H . # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 190D _cell.length_a 82.300 _cell.length_b 82.300 _cell.length_c 82.300 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 192 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 190D _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? # _exptl.entry_id 190D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.90 _exptl_crystal.density_Matthews 2.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.50 _exptl_crystal_grow.pdbx_details 'pH 5.50, VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 2 WATER ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _refine.entry_id 190D _refine.ls_number_reflns_obs 8177 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 1.800 _refine.ls_percent_reflns_obs 95.100 _refine.ls_R_factor_obs 0.2180000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2180000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THIS IS THE FIRST X-RAY STRUCTURE OF THE INTERCALATED CYTOSINE QUADRUPLEX. THE PAPER CITED IN JRNL DESCRIBED THE D(C4) STRUCTURE REFINED AT 2.3 ANGSTROMS RESOLUTION. THE AUTHORS HAVE EXTENDED THE STRUCTURE DETERMINATION TO 1.8 ANGSTROMS RESOLUTION AND THE COORDINATES DEPOSITED ARE THE FINAL 1.8 ANGSTROMS STRUCTURE WHICH IS BASICALLY THE SAME AS THAT AT 2.3 ANGSTROMS RESOLUTION. THERE ARE 8 D(C4) STRANDS PER ASYMMETRIC UNIT WHICH FORM TWO TETRAMERS. THE FIRST TETRAMER IS NUMBERED FROM 1 TO 16, AND THE OTHER TETRAMER FROM 17 TO 32. THERE ARE 46 WATER MOLECULES FOUND AT 1.8 A RESOLUTION. ALL HYDROGEN ATOMS ARE INCLUDED FOR EASY REFERENCE ALTHOUGH THEY ARE NOT REFINED WITH X-RAY DATA. THE STRUCTURE WAS SOLVED BY HEAVY ATOM PHASING. K2PTCL6 WAS SOAKED INTO THE CRYSTAL AND ONLY ONE PT SITE WAS FOUND WHICH WAS AT THE THREE-FOLD AXIS. SINGLE ISOMORPHOUS REPLACEMENT (SIR) PHASES AND SINGLE-WAVELENGTH ANOMALOUS SCATTERING (SAS) PHASES WERE IMPROVED BY SOLVENT FLATTENING. THE RESULTANT ELECTRON DENSITY MAP CLEARLY REVEALED THE INTERCALATED STRUCTURE FOR THE FIRST TIME. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 952 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 138 _refine_hist.number_atoms_total 1090 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.70 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 190D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 190D _struct.title 'Crystal structure of a four-stranded intercalated DNA: d(C4)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 190D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'U-DNA, QUADRUPLE HELIX, PARALLEL-STRANDED TETRAPLEX, BASE INTERCALATED, MISMATCHED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 190D _struct_ref.pdbx_db_accession 190D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 190D A 1 ? 4 ? 190D 1 ? 4 ? 1 4 2 1 190D B 1 ? 4 ? 190D 5 ? 8 ? 5 8 3 1 190D C 1 ? 4 ? 190D 9 ? 12 ? 9 12 4 1 190D D 1 ? 4 ? 190D 13 ? 16 ? 13 16 5 1 190D E 1 ? 4 ? 190D 17 ? 20 ? 17 20 6 1 190D F 1 ? 4 ? 190D 21 ? 24 ? 21 24 7 1 190D G 1 ? 4 ? 190D 25 ? 28 ? 25 28 8 1 190D H 1 ? 4 ? 190D 29 ? 32 ? 29 32 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 author_and_software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3810 ? 2 MORE 7.1 ? 2 'SSA (A^2)' 1490 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,I,J,K,L 2 1 E,F,G,H,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.details 1 ? 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DC 1 O2 ? ? A DC 1 B DC 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog2 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DC 1 N4 ? ? A DC 1 B DC 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DC 2 O2 ? ? A DC 2 B DC 6 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DC 2 N4 ? ? A DC 2 B DC 6 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog5 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DC 3 O2 ? ? A DC 3 B DC 7 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog6 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DC 3 N4 ? ? A DC 3 B DC 7 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog7 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DC 4 O2 ? ? A DC 4 B DC 8 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog8 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DC 4 N4 ? ? A DC 4 B DC 8 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog9 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DC 1 O2 ? ? C DC 9 D DC 13 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog10 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DC 1 N4 ? ? C DC 9 D DC 13 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog11 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DC 2 O2 ? ? C DC 10 D DC 14 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog12 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DC 2 N4 ? ? C DC 10 D DC 14 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog13 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DC 3 O2 ? ? C DC 11 D DC 15 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog14 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DC 3 N4 ? ? C DC 11 D DC 15 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog15 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DC 4 O2 ? ? C DC 12 D DC 16 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog16 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DC 4 N4 ? ? C DC 12 D DC 16 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog17 hydrog ? ? E DC 1 N3 ? ? ? 1_555 F DC 1 N4 ? ? E DC 17 F DC 21 1_555 ? ? ? ? ? ? TYPE_14_PAIR ? ? ? hydrog18 hydrog ? ? E DC 1 N4 ? ? ? 1_555 F DC 1 N3 ? ? E DC 17 F DC 21 1_555 ? ? ? ? ? ? TYPE_14_PAIR ? ? ? hydrog19 hydrog ? ? E DC 2 N4 ? ? ? 1_555 F DC 2 O2 ? ? E DC 18 F DC 22 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog20 hydrog ? ? E DC 2 O2 ? ? ? 1_555 F DC 2 N4 ? ? E DC 18 F DC 22 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog21 hydrog ? ? E DC 3 N4 ? ? ? 1_555 F DC 3 O2 ? ? E DC 19 F DC 23 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog22 hydrog ? ? E DC 3 O2 ? ? ? 1_555 F DC 3 N4 ? ? E DC 19 F DC 23 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog23 hydrog ? ? E DC 4 N4 ? ? ? 1_555 F DC 4 O2 ? ? E DC 20 F DC 24 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog24 hydrog ? ? E DC 4 O2 ? ? ? 1_555 F DC 4 N4 ? ? E DC 20 F DC 24 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog25 hydrog ? ? G DC 1 N4 ? ? ? 1_555 H DC 1 O2 ? ? G DC 25 H DC 29 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog26 hydrog ? ? G DC 1 O2 ? ? ? 1_555 H DC 1 N4 ? ? G DC 25 H DC 29 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog27 hydrog ? ? G DC 2 N4 ? ? ? 1_555 H DC 2 O2 ? ? G DC 26 H DC 30 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog28 hydrog ? ? G DC 2 O2 ? ? ? 1_555 H DC 2 N4 ? ? G DC 26 H DC 30 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog29 hydrog ? ? G DC 3 N4 ? ? ? 1_555 H DC 3 O2 ? ? G DC 27 H DC 31 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog30 hydrog ? ? G DC 3 O2 ? ? ? 1_555 H DC 3 N4 ? ? G DC 27 H DC 31 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog31 hydrog ? ? G DC 4 N4 ? ? ? 1_555 H DC 4 O2 ? ? G DC 28 H DC 32 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog32 hydrog ? ? G DC 4 O2 ? ? ? 1_555 H DC 4 N4 ? ? G DC 28 H DC 32 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H41 A DC 3 ? ? H1 E HOH 60 ? ? 0.95 2 1 H41 E DC 20 ? ? H1 E HOH 47 ? ? 1.16 3 1 H41 H DC 32 ? ? H2 H HOH 63 ? ? 1.16 4 1 H41 G DC 28 ? ? H2 G HOH 51 ? ? 1.22 5 1 H41 B DC 7 ? ? H2 B HOH 41 ? ? 1.27 6 1 H1 B HOH 68 ? ? H1 D HOH 56 ? ? 1.28 7 1 H42 B DC 5 ? ? H2 B HOH 68 ? ? 1.30 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 H41 _pdbx_validate_symm_contact.auth_asym_id_1 H _pdbx_validate_symm_contact.auth_comp_id_1 DC _pdbx_validate_symm_contact.auth_seq_id_1 30 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 H2 _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 38 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 23_555 _pdbx_validate_symm_contact.dist 1.02 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C4'" B DC 7 ? ? "C3'" B DC 7 ? ? 1.458 1.521 -0.063 0.010 N 2 1 "C5'" F DC 21 ? ? "C4'" F DC 21 ? ? 1.572 1.512 0.060 0.007 N 3 1 "C3'" H DC 29 ? ? "C2'" H DC 29 ? ? 1.466 1.516 -0.050 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.88 108.30 2.58 0.30 N 2 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 98.65 104.50 -5.85 0.40 N 3 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.83 108.30 3.53 0.30 N 4 1 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 123.00 118.90 4.10 0.60 N 5 1 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P A DC 3 ? ? 127.16 119.70 7.46 1.20 Y 6 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.21 118.90 4.31 0.60 N 7 1 "C1'" A DC 4 ? ? "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? 101.13 110.10 -8.97 1.00 N 8 1 C2 A DC 4 ? ? N3 A DC 4 ? ? C4 A DC 4 ? ? 123.26 119.90 3.36 0.50 N 9 1 N3 A DC 4 ? ? C4 A DC 4 ? ? C5 A DC 4 ? ? 119.06 121.90 -2.84 0.40 N 10 1 "C1'" B DC 6 ? ? "O4'" B DC 6 ? ? "C4'" B DC 6 ? ? 103.27 110.10 -6.83 1.00 N 11 1 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 111.04 108.30 2.74 0.30 N 12 1 "C1'" C DC 10 ? ? "O4'" C DC 10 ? ? "C4'" C DC 10 ? ? 103.38 110.10 -6.72 1.00 N 13 1 N1 C DC 10 ? ? C2 C DC 10 ? ? O2 C DC 10 ? ? 123.76 118.90 4.86 0.60 N 14 1 "O4'" D DC 13 ? ? "C1'" D DC 13 ? ? N1 D DC 13 ? ? 110.48 108.30 2.18 0.30 N 15 1 "C3'" D DC 13 ? ? "O3'" D DC 13 ? ? P D DC 14 ? ? 127.10 119.70 7.40 1.20 Y 16 1 C2 D DC 14 ? ? N3 D DC 14 ? ? C4 D DC 14 ? ? 123.29 119.90 3.39 0.50 N 17 1 N1 D DC 15 ? ? C2 D DC 15 ? ? O2 D DC 15 ? ? 123.40 118.90 4.50 0.60 N 18 1 C2 E DC 20 ? ? N3 E DC 20 ? ? C4 E DC 20 ? ? 122.98 119.90 3.08 0.50 N 19 1 "C1'" F DC 22 ? ? "O4'" F DC 22 ? ? "C4'" F DC 22 ? ? 102.40 110.10 -7.70 1.00 N 20 1 "O4'" F DC 23 ? ? "C1'" F DC 23 ? ? N1 F DC 23 ? ? 103.51 108.00 -4.49 0.70 N 21 1 "O4'" G DC 25 ? ? "C1'" G DC 25 ? ? N1 G DC 25 ? ? 110.64 108.30 2.34 0.30 N 22 1 C2 G DC 25 ? ? N3 G DC 25 ? ? C4 G DC 25 ? ? 123.00 119.90 3.10 0.50 N 23 1 N1 G DC 25 ? ? C2 G DC 25 ? ? O2 G DC 25 ? ? 122.87 118.90 3.97 0.60 N 24 1 "C1'" G DC 26 ? ? "O4'" G DC 26 ? ? "C4'" G DC 26 ? ? 103.85 110.10 -6.25 1.00 N 25 1 "C1'" G DC 27 ? ? "O4'" G DC 27 ? ? "C4'" G DC 27 ? ? 103.88 110.10 -6.22 1.00 N 26 1 "C4'" G DC 27 ? ? "C3'" G DC 27 ? ? "C2'" G DC 27 ? ? 97.53 102.20 -4.67 0.70 N 27 1 "O4'" G DC 27 ? ? "C1'" G DC 27 ? ? N1 G DC 27 ? ? 111.47 108.30 3.17 0.30 N 28 1 "C3'" G DC 27 ? ? "O3'" G DC 27 ? ? P G DC 28 ? ? 128.40 119.70 8.70 1.20 Y 29 1 "C1'" G DC 28 ? ? "O4'" G DC 28 ? ? "C4'" G DC 28 ? ? 102.32 110.10 -7.78 1.00 N 30 1 "C4'" H DC 30 ? ? "C3'" H DC 30 ? ? "C2'" H DC 30 ? ? 96.53 102.20 -5.67 0.70 N 31 1 N1 H DC 30 ? ? C2 H DC 30 ? ? O2 H DC 30 ? ? 122.50 118.90 3.60 0.60 N 32 1 "O4'" H DC 31 ? ? "C4'" H DC 31 ? ? "C3'" H DC 31 ? ? 101.53 104.50 -2.97 0.40 N 33 1 "O4'" H DC 31 ? ? "C1'" H DC 31 ? ? N1 H DC 31 ? ? 110.54 108.30 2.24 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC C 9 ? ? 0.092 'SIDE CHAIN' 2 1 DC C 10 ? ? 0.081 'SIDE CHAIN' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 HOH O O N N 35 HOH H1 H N N 36 HOH H2 H N N 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 HOH O H1 sing N N 36 HOH O H2 sing N N 37 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 190D 'double helix' 190D 'parallel strands' 190D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DC 1 1_555 -2.027 -1.431 0.182 18.437 1.868 -178.307 1 A_DC1:DC5_B A 1 ? B 5 ? 15 2 1 D DC 4 1_555 C DC 4 1_555 2.053 1.162 0.176 4.138 0.105 179.472 2 D_DC16:DC12_C D 16 ? C 12 ? 15 2 1 A DC 2 1_555 B DC 2 1_555 1.917 1.315 -0.126 -8.400 0.923 178.796 3 A_DC2:DC6_B A 2 ? B 6 ? 15 2 1 D DC 3 1_555 C DC 3 1_555 -2.012 -1.324 0.015 4.510 2.494 -179.046 4 D_DC15:DC11_C D 15 ? C 11 ? 15 2 1 A DC 3 1_555 B DC 3 1_555 1.988 1.330 0.195 -2.343 0.019 178.311 5 A_DC3:DC7_B A 3 ? B 7 ? 15 2 1 D DC 2 1_555 C DC 2 1_555 1.987 1.158 0.057 -9.059 -0.603 179.830 6 D_DC14:DC10_C D 14 ? C 10 ? 15 2 1 A DC 4 1_555 B DC 4 1_555 2.096 1.222 -0.070 6.674 -0.417 178.411 7 A_DC4:DC8_B A 4 ? B 8 ? 15 2 1 D DC 1 1_555 C DC 1 1_555 1.995 1.260 0.217 -19.851 -0.343 178.564 8 D_DC13:DC9_C D 13 ? C 9 ? 15 2 1 E DC 1 1_555 F DC 1 1_555 -2.045 -0.748 0.080 12.537 -9.725 -178.387 9 E_DC17:DC21_F E 17 ? F 21 ? 14 2 1 H DC 4 1_555 G DC 4 1_555 -2.074 -1.170 -0.091 0.908 11.551 -179.636 10 H_DC32:DC28_G H 32 ? G 28 ? 15 2 1 E DC 2 1_555 F DC 2 1_555 -2.047 -1.256 -0.060 6.855 2.117 -179.010 11 E_DC18:DC22_F E 18 ? F 22 ? 15 2 1 H DC 3 1_555 G DC 3 1_555 2.029 1.409 0.099 -4.954 -3.063 179.386 12 H_DC31:DC27_G H 31 ? G 27 ? 15 2 1 E DC 3 1_555 F DC 3 1_555 2.085 1.448 -0.015 -5.312 -2.453 178.954 13 E_DC19:DC23_F E 19 ? F 23 ? 15 2 1 H DC 2 1_555 G DC 2 1_555 2.070 1.251 0.070 -3.664 -0.570 178.532 14 H_DC30:DC26_G H 30 ? G 26 ? 15 2 1 E DC 4 1_555 F DC 4 1_555 1.905 1.398 0.009 -7.204 -4.078 179.355 15 E_DC20:DC24_F E 20 ? F 24 ? 15 2 1 H DC 1 1_555 G DC 1 1_555 -1.995 -1.224 -0.027 1.867 0.453 -179.767 16 H_DC29:DC25_G H 29 ? G 25 ? 15 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DC 1 1_555 D DC 4 1_555 C DC 4 1_555 -2.533 -1.938 -0.192 -117.386 133.516 26.678 -0.962 1.273 0.167 67.399 59.257 177.841 1 AD_DC1DC16:DC12DC5_CB A 1 ? B 5 ? D 16 ? C 12 ? 1 D DC 4 1_555 C DC 4 1_555 A DC 2 1_555 B DC 2 1_555 -1.788 2.497 -0.063 -142.218 -102.257 39.733 1.231 0.920 -0.027 -52.060 72.405 175.452 2 DA_DC16DC2:DC6DC12_BC D 16 ? C 12 ? A 2 ? B 6 ? 1 A DC 2 1_555 B DC 2 1_555 D DC 3 1_555 C DC 3 1_555 2.316 2.091 0.023 112.177 -136.698 24.318 1.010 -1.188 -0.139 -69.315 -56.881 176.904 3 AD_DC2DC15:DC11DC6_CB A 2 ? B 6 ? D 15 ? C 11 ? 1 D DC 3 1_555 C DC 3 1_555 A DC 3 1_555 B DC 3 1_555 2.578 1.818 -0.074 -101.203 144.075 23.744 0.937 -1.270 -0.010 73.315 51.499 176.151 4 DA_DC15DC3:DC7DC11_BC D 15 ? C 11 ? A 3 ? B 7 ? 1 A DC 3 1_555 B DC 3 1_555 D DC 2 1_555 C DC 2 1_555 2.129 -2.335 0.106 -131.512 -118.625 149.530 -1.158 -1.075 0.098 -59.346 65.794 179.240 5 AD_DC3DC14:DC10DC7_CB A 3 ? B 7 ? D 14 ? C 10 ? 1 D DC 2 1_555 C DC 2 1_555 A DC 4 1_555 B DC 4 1_555 -1.780 2.582 -0.044 -145.956 -101.547 50.473 1.277 0.910 -0.031 -51.133 73.495 178.016 6 DA_DC14DC4:DC8DC10_BC D 14 ? C 10 ? A 4 ? B 8 ? 1 A DC 4 1_555 B DC 4 1_555 D DC 1 1_555 C DC 1 1_555 2.230 -2.239 0.336 -130.888 -118.530 165.025 -1.105 -1.131 0.313 -59.275 65.455 179.555 7 AD_DC4DC13:DC9DC8_CB A 4 ? B 8 ? D 13 ? C 9 ? 1 E DC 1 1_555 F DC 1 1_555 H DC 4 1_555 G DC 4 1_555 -2.390 2.012 0.050 126.835 126.209 -70.847 -1.061 -1.140 0.253 -63.263 63.577 -179.127 8 EH_DC17DC32:DC28DC21_GF E 17 ? F 21 ? H 32 ? G 28 ? 1 H DC 4 1_555 G DC 4 1_555 E DC 2 1_555 F DC 2 1_555 2.023 -2.846 -0.099 144.808 104.732 -77.768 1.443 0.985 -0.040 -52.506 72.598 -178.997 9 HE_DC32DC18:DC22DC28_FG H 32 ? G 28 ? E 18 ? F 22 ? 1 E DC 2 1_555 F DC 2 1_555 H DC 3 1_555 G DC 3 1_555 -2.344 -1.960 -0.044 -115.725 135.946 134.394 -0.974 1.177 -0.030 68.017 57.900 179.431 10 EH_DC18DC31:DC27DC22_GF E 18 ? F 22 ? H 31 ? G 27 ? 1 H DC 3 1_555 G DC 3 1_555 E DC 3 1_555 F DC 3 1_555 -1.644 2.790 -0.105 -146.412 -97.794 45.354 1.337 0.909 -0.209 -49.568 74.210 176.373 11 HE_DC31DC19:DC23DC27_FG H 31 ? G 27 ? E 19 ? F 23 ? 1 E DC 3 1_555 F DC 3 1_555 H DC 2 1_555 G DC 2 1_555 2.020 -2.439 0.176 -138.026 -114.121 152.433 -1.206 -1.026 0.170 -57.069 69.023 179.784 12 EH_DC19DC30:DC26DC23_GF E 19 ? F 23 ? H 30 ? G 26 ? 1 H DC 2 1_555 G DC 2 1_555 E DC 4 1_555 F DC 4 1_555 -1.541 2.820 0.081 -148.647 -98.031 27.409 1.376 0.822 -0.240 -49.423 74.941 178.116 13 HE_DC30DC20:DC24DC26_FG H 30 ? G 26 ? E 20 ? F 24 ? 1 E DC 4 1_555 F DC 4 1_555 H DC 1 1_555 G DC 1 1_555 -2.225 -2.093 -0.181 -117.325 132.353 3.828 -0.947 1.202 -0.097 67.309 59.666 176.870 14 EH_DC20DC29:DC25DC24_GF E 20 ? F 24 ? H 29 ? G 25 ? # _atom_sites.entry_id 190D _atom_sites.fract_transf_matrix[1][1] 0.012151 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012151 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012151 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_