HEADER ALU DOMAIN 13-NOV-97 1914 TITLE SIGNAL RECOGNITION PARTICLE ALU RNA BINDING HETERODIMER, SRP9/14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL RECOGNITION PARTICLE 9/14 FUSION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALU RNA BINDING HETERODIMER; COMPND 5 SYNONYM: SRP9/14, ALU BM, RBD; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL_LINE: BL21 PLYSS; SOURCE 6 CELLULAR_LOCATION: CYTOPLASM; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3C KEYWDS ALU DOMAIN, RNA BINDING, SIGNAL RECOGNITION PARTICLE (SRP), KEYWDS 2 TRANSLATION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR D.BIRSE,U.KAPP,K.STRUB,S.CUSACK,A.ABERG REVDAT 5 05-JUN-24 1914 1 REMARK LINK REVDAT 4 16-NOV-11 1914 1 VERSN HETATM REVDAT 3 24-FEB-09 1914 1 VERSN REVDAT 2 11-MAY-99 1914 1 SOURCE COMPND MODRES REMARK REVDAT 2 2 1 SEQRES SEQADV LINK JRNL REVDAT 1 30-DEC-98 1914 0 JRNL AUTH D.E.BIRSE,U.KAPP,K.STRUB,S.CUSACK,A.ABERG JRNL TITL THE CRYSTAL STRUCTURE OF THE SIGNAL RECOGNITION PARTICLE ALU JRNL TITL 2 RNA BINDING HETERODIMER, SRP9/14. JRNL REF EMBO J. V. 16 3757 1997 JRNL REFN ISSN 0261-4189 JRNL PMID 9233785 JRNL DOI 10.1093/EMBOJ/16.13.3757 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.E.BIRSE,S.DOUBLIE,U.KAPP,K.STRUB,S.CUSACK,A.ABERG REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 2 THE SIGNAL RECOGNITION PARTICLE SRPPHI14-9 FUSION PROTEIN REMARK 1 REF FEBS LETT. V. 384 215 1996 REMARK 1 REFN ISSN 0014-5793 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 7634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.64 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1383 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 20.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE MODEL INCLUDES 77 RESIDUES OF SRP9 (4-81) AND 84 REMARK 3 RESIDUES OF SRP14 (1-34) AND (47-97). THE SRP14 LOOP REMARK 3 ELECTRON DENSITY CONNECTING 14B1-14B2 (34-47) IS WEAK REMARK 3 SUGGESTING THAT THE LOOP IS FLEXIBLE. 5 C-TERMINAL AND 3 REMARK 3 N-TERMINAL RESIDUES OF SRP9 AND 13 C-TERMINAL RESIDUES OF REMARK 3 SRP14 HAVE POORLY DEFINED DENSITY. IN ADDITION, THE MODEL REMARK 3 DOES NOT INCLUDE THE SRPF14-9 N-TERMINAL F EXTENSION REMARK 3 (18 RESIDUES) NOR THE ENTIRE LINKER REGION OF WHICH ONLY 8 REMARK 3 OF 17 RESIDUES ARE ORDERED. REMARK 4 REMARK 4 1914 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : SEP-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 10 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : CU FILTER REMARK 200 OPTICS : TOROIDAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36596 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.02180 REMARK 200 R SYM FOR SHELL (I) : 0.02180 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MULTIPLE ISOMORPHOUS REMARK 200 REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.8 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE COLLECTED ON SELENIUM, MERCURY AND PLATINUM REMARK 200 DERIVATIVES TO SOLVE MIR STRUCTURE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE SRPPHI14-9 PROTEIN WAS REMARK 280 CRYSTALLIZED (BIRSE ET AL., FEBS LETTERS, 1996) BY THE HANGING REMARK 280 DROP METHOD IN 2.0 M NAH2/K2H PO4, PH 7.7, 2% MPD, 1.0 MM NAN3 REMARK 280 AT 4 DEGREES C WITH A FINAL PROTEIN CONCENTRATION OF 5-8 MG ML- REMARK 280 1. CRYSTALS FORMED OVER 2-3 WEEKS AND WERE TYPICALLY 150 X 150 X REMARK 280 300 MM3 IN SPACE, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.22000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.83000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.61000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.22000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 22.61000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.83000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A9000 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1982 REMARK 465 ALA A 1983 REMARK 465 SER A 1984 REMARK 465 MET A 1985 REMARK 465 THR A 1986 REMARK 465 GLY A 1987 REMARK 465 GLY A 1988 REMARK 465 GLN A 1989 REMARK 465 GLN A 1990 REMARK 465 MET A 1991 REMARK 465 GLY A 1992 REMARK 465 ARG A 1993 REMARK 465 ILE A 1994 REMARK 465 PRO A 1995 REMARK 465 GLY A 1996 REMARK 465 ASN A 1997 REMARK 465 SER A 1998 REMARK 465 PRO A 1999 REMARK 465 ARG A 2000 REMARK 465 GLY A 2035 REMARK 465 ARG A 2036 REMARK 465 THR A 2037 REMARK 465 LYS A 2038 REMARK 465 PRO A 2039 REMARK 465 ILE A 2040 REMARK 465 PRO A 2041 REMARK 465 ARG A 2042 REMARK 465 LYS A 2043 REMARK 465 SER A 2044 REMARK 465 SER A 2045 REMARK 465 VAL A 2046 REMARK 465 ASP A 2990 REMARK 465 LYS A 2991 REMARK 465 LYS A 2992 REMARK 465 ASN A 2993 REMARK 465 LYS A 2994 REMARK 465 SER A 2995 REMARK 465 LYS A 2996 REMARK 465 LYS A 2997 REMARK 465 SER A 2998 REMARK 465 LYS A 2999 REMARK 465 PRO A 3000 REMARK 465 ILE A 3990 REMARK 465 SER A 3991 REMARK 465 GLU A 3992 REMARK 465 GLU A 3993 REMARK 465 ASP A 3994 REMARK 465 ASP A 3995 REMARK 465 SER A 3996 REMARK 465 ALA A 3997 REMARK 465 GLY A 3998 REMARK 465 SER A 3999 REMARK 465 PRO A 4000 REMARK 465 MET A 4001 REMARK 465 PRO A 4002 REMARK 465 GLN A 4003 REMARK 465 THR A 4082 REMARK 465 MET A 4083 REMARK 465 GLU A 4084 REMARK 465 THR A 4085 REMARK 465 GLU A 4086 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 4004 N THR A 4006 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 2018 OE1 GLU A 4008 3654 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A2048 N GLY A2048 CA 0.131 REMARK 500 THR A2061 CB THR A2061 CG2 -0.491 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A2021 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 GLU A2047 CB - CA - C ANGL. DEV. = 27.8 DEGREES REMARK 500 GLU A2047 N - CA - C ANGL. DEV. = -19.5 DEGREES REMARK 500 GLU A2047 CA - C - N ANGL. DEV. = 23.8 DEGREES REMARK 500 GLU A2047 O - C - N ANGL. DEV. = -24.6 DEGREES REMARK 500 ARG A2065 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 LYS A2066 C - N - CA ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG A2097 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 PHE A4004 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 ASN A4080 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A2049 62.86 65.94 REMARK 500 PRO A2051 16.63 -62.46 REMARK 500 ALA A2052 -70.15 100.04 REMARK 500 GLU A2053 94.41 115.57 REMARK 500 GLU A2075 21.81 -140.87 REMARK 500 LYS A2095 97.91 -44.87 REMARK 500 LYS A2096 -82.14 -22.92 REMARK 500 GLN A4005 -93.01 44.86 REMARK 500 LEU A4046 -71.54 -117.31 REMARK 500 ASN A4080 54.62 -95.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A2065 15.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 6000 DBREF 1914 A 2001 3002 UNP P16254 SR14_MOUSE 1 110 SEQRES 1 A 232 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG ILE SEQRES 2 A 232 PRO GLY ASN SER PRO ARG MET VAL LEU LEU GLU SER GLU SEQRES 3 A 232 GLN PHE LEU THR GLU LEU THR ARG LEU PHE GLN LYS CYS SEQRES 4 A 232 ARG SER SER GLY SER VAL PHE ILE THR LEU LYS LYS TYR SEQRES 5 A 232 ASP GLY ARG THR LYS PRO ILE PRO ARG LYS SER SER VAL SEQRES 6 A 232 GLU GLY LEU GLU PRO ALA GLU ASN LYS CYS LEU LEU ARG SEQRES 7 A 232 ALA THR ASP GLY LYS ARG LYS ILE SER THR VAL VAL SER SEQRES 8 A 232 SER LYS GLU VAL ASN LYS PHE GLN MET ALA TYR SER ASN SEQRES 9 A 232 LEU LEU ARG ALA ASN MET ASP GLY LEU LYS LYS ARG ASP SEQRES 10 A 232 LYS LYS ASN LYS SER LYS LYS SER LYS PRO ALA GLN GLY SEQRES 11 A 232 GLY GLU GLN LYS LEU ILE SER GLU GLU ASP ASP SER ALA SEQRES 12 A 232 GLY SER PRO MET PRO GLN PHE GLN THR TRP GLU GLU PHE SEQRES 13 A 232 SER ARG ALA ALA GLU LYS LEU TYR LEU ALA ASP PRO MET SEQRES 14 A 232 LYS VAL ARG VAL VAL LEU LYS TYR ARG HIS VAL ASP GLY SEQRES 15 A 232 ASN LEU CYS ILE LYS VAL THR ASP ASP LEU VAL CYS LEU SEQRES 16 A 232 VAL TYR ARG THR ASP GLN ALA GLN ASP VAL LYS LYS ILE SEQRES 17 A 232 GLU LYS PHE HIS SER GLN LEU MET ARG LEU MET VAL ALA SEQRES 18 A 232 LYS GLU SER ARG ASN VAL THR MET GLU THR GLU HET PO4 A5001 5 HET BME A6000 4 HETNAM PO4 PHOSPHATE ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 2 PO4 O4 P 3- FORMUL 3 BME C2 H6 O S FORMUL 4 HOH *17(H2 O) HELIX 1 1 SER A 2006 CYS A 2020 1 15 HELIX 2 2 VAL A 2076 ASN A 2090 1 15 HELIX 3 3 TRP A 4007 ALA A 4020 1 14 HELIX 4 4 ALA A 4056 VAL A 4074 1 19 SHEET 1 A 7 LYS A2066 SER A2072 0 SHEET 2 A 7 LYS A2055 THR A2061 -1 N ALA A2060 O ILE A2067 SHEET 3 A 7 VAL A2026 TYR A2033 -1 N TYR A2033 O LYS A2055 SHEET 4 A 7 ARG A4026 ARG A4032 -1 N TYR A4031 O VAL A2026 SHEET 5 A 7 ASN A4037 THR A4043 -1 N THR A4043 O ARG A4026 SHEET 6 A 7 CYS A4048 THR A4053 -1 N THR A4053 O LEU A4038 SHEET 7 A 7 GLY A3003 LYS A3007 -1 N LYS A3007 O CYS A4048 LINK SG CYS A4039 S2 BME A6000 1555 1555 2.03 SITE 1 AC1 4 LYS A2031 ARG A2059 ARG A4026 VAL A4081 SITE 1 AC2 3 VAL A4028 CYS A4039 ARG A4052 CRYST1 69.020 69.020 90.440 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014489 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011057 0.00000