data_191D # _entry.id 191D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 191D pdb_0000191d 10.2210/pdb191d/pdb RCSB UDD023 ? ? WWPDB D_1000170203 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-11-30 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-10-03 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Other 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 191D _pdbx_database_status.recvd_initial_deposition_date 1994-09-29 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kang, C.' 1 'Berger, I.' 2 'Lockshin, C.' 3 'Ratliff, R.' 4 'Moyzis, R.' 5 'Rich, A.' 6 # _citation.id primary _citation.title 'Crystal structure of intercalated four-stranded d(C3T) at 1.4 angstroms resolution.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 91 _citation.page_first 11636 _citation.page_last 11640 _citation.year 1994 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7972115 _citation.pdbx_database_id_DOI 10.1073/pnas.91.24.11636 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kang, C.H.' 1 ? primary 'Berger, I.' 2 ? primary 'Lockshin, C.' 3 ? primary 'Ratliff, R.' 4 ? primary 'Moyzis, R.' 5 ? primary 'Rich, A.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*CP*T)-3') ; 1126.781 4 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 3 water nat water 18.015 63 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DC)(DT)' _entity_poly.pdbx_seq_one_letter_code_can CCCT _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DC n 1 4 DT n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DT 4 4 4 DT T A . n B 1 1 DC 1 5 5 DC C B . n B 1 2 DC 2 6 6 DC C B . n B 1 3 DC 3 7 7 DC C B . n B 1 4 DT 4 8 8 DT T B . n C 1 1 DC 1 9 9 DC C C . n C 1 2 DC 2 10 10 DC C C . n C 1 3 DC 3 11 11 DC C C . n C 1 4 DT 4 12 12 DT T C . n D 1 1 DC 1 13 13 DC C D . n D 1 2 DC 2 14 14 DC C D . n D 1 3 DC 3 15 15 DC C D . n D 1 4 DT 4 16 16 DT T D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA 1 19 19 NA NA A . F 2 NA 1 17 17 NA NA B . G 2 NA 1 18 18 NA NA C . H 3 HOH 1 20 20 HOH HOH A . H 3 HOH 2 22 22 HOH HOH A . H 3 HOH 3 36 36 HOH HOH A . H 3 HOH 4 38 38 HOH HOH A . H 3 HOH 5 39 39 HOH HOH A . H 3 HOH 6 40 40 HOH HOH A . H 3 HOH 7 44 44 HOH HOH A . H 3 HOH 8 47 47 HOH HOH A . H 3 HOH 9 48 48 HOH HOH A . H 3 HOH 10 54 54 HOH HOH A . H 3 HOH 11 60 60 HOH HOH A . H 3 HOH 12 64 64 HOH HOH A . H 3 HOH 13 65 65 HOH HOH A . H 3 HOH 14 67 67 HOH HOH A . H 3 HOH 15 72 72 HOH HOH A . H 3 HOH 16 75 75 HOH HOH A . H 3 HOH 17 79 79 HOH HOH A . I 3 HOH 1 24 24 HOH HOH B . I 3 HOH 2 25 25 HOH HOH B . I 3 HOH 3 34 34 HOH HOH B . I 3 HOH 4 37 37 HOH HOH B . I 3 HOH 5 53 53 HOH HOH B . I 3 HOH 6 58 58 HOH HOH B . I 3 HOH 7 73 73 HOH HOH B . J 3 HOH 1 23 23 HOH HOH C . J 3 HOH 2 26 26 HOH HOH C . J 3 HOH 3 28 28 HOH HOH C . J 3 HOH 4 29 29 HOH HOH C . J 3 HOH 5 30 30 HOH HOH C . J 3 HOH 6 35 35 HOH HOH C . J 3 HOH 7 42 42 HOH HOH C . J 3 HOH 8 43 43 HOH HOH C . J 3 HOH 9 45 45 HOH HOH C . J 3 HOH 10 56 56 HOH HOH C . J 3 HOH 11 61 61 HOH HOH C . J 3 HOH 12 63 63 HOH HOH C . J 3 HOH 13 74 74 HOH HOH C . K 3 HOH 1 21 21 HOH HOH D . K 3 HOH 2 27 27 HOH HOH D . K 3 HOH 3 31 31 HOH HOH D . K 3 HOH 4 32 32 HOH HOH D . K 3 HOH 5 33 33 HOH HOH D . K 3 HOH 6 41 41 HOH HOH D . K 3 HOH 7 46 46 HOH HOH D . K 3 HOH 8 49 49 HOH HOH D . K 3 HOH 9 50 50 HOH HOH D . K 3 HOH 10 51 51 HOH HOH D . K 3 HOH 11 52 52 HOH HOH D . K 3 HOH 12 55 55 HOH HOH D . K 3 HOH 13 57 57 HOH HOH D . K 3 HOH 14 59 59 HOH HOH D . K 3 HOH 15 62 62 HOH HOH D . K 3 HOH 16 66 66 HOH HOH D . K 3 HOH 17 68 68 HOH HOH D . K 3 HOH 18 69 69 HOH HOH D . K 3 HOH 19 70 70 HOH HOH D . K 3 HOH 20 71 71 HOH HOH D . K 3 HOH 21 76 76 HOH HOH D . K 3 HOH 22 77 77 HOH HOH D . K 3 HOH 23 78 78 HOH HOH D . K 3 HOH 24 80 80 HOH HOH D . K 3 HOH 25 81 81 HOH HOH D . K 3 HOH 26 82 82 HOH HOH D . # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 191D _cell.length_a 28.281 _cell.length_b 44.341 _cell.length_c 50.472 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 191D _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 191D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 29.93 _exptl_crystal.density_Matthews 1.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 1 SRCL2 ? ? ? 1 6 1 'SR CACODYLATE' ? ? ? 1 7 2 WATER ? ? ? 1 8 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 277.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 191D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.400 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.entry_id 191D _refine.ls_number_reflns_obs 5013 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 1.400 _refine.ls_percent_reflns_obs 96.000 _refine.ls_R_factor_obs 0.1770000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1770000 _refine.ls_R_factor_R_free 0.2250000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 296 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 63 _refine_hist.number_atoms_total 362 _refine_hist.d_res_high 1.400 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.029 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 4.00 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 191D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 191D _struct.title 'CRYSTAL STRUCTURE OF INTERCALATED FOUR-STRANDED D(C3T)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 191D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'U-DNA, QUADRUPLE HELIX, PARALLEL-STRANDED TETRAPLEX, BASE INTERCALATED, MISMATCHED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 191D _struct_ref.pdbx_db_accession 191D _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 191D A 1 ? 4 ? 191D 1 ? 4 ? 1 4 2 1 191D B 1 ? 4 ? 191D 5 ? 8 ? 5 8 3 1 191D C 1 ? 4 ? 191D 9 ? 12 ? 9 12 4 1 191D D 1 ? 4 ? 191D 13 ? 16 ? 13 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 2 OP2 ? ? ? 1_555 E NA . NA ? ? A DC 2 A NA 19 1_555 ? ? ? ? ? ? ? 2.677 ? ? metalc2 metalc ? ? B DT 4 OP1 ? ? ? 1_555 F NA . NA ? ? B DT 8 B NA 17 1_555 ? ? ? ? ? ? ? 2.858 ? ? metalc3 metalc ? ? F NA . NA ? ? ? 1_555 K HOH . O ? ? B NA 17 D HOH 69 1_555 ? ? ? ? ? ? ? 2.841 ? ? metalc4 metalc ? ? G NA . NA ? ? ? 1_555 J HOH . O ? ? C NA 18 C HOH 35 1_555 ? ? ? ? ? ? ? 3.095 ? ? metalc5 metalc ? ? G NA . NA ? ? ? 1_555 J HOH . O ? ? C NA 18 C HOH 42 1_555 ? ? ? ? ? ? ? 3.099 ? ? hydrog1 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DC 1 O2 ? ? A DC 1 B DC 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog2 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DC 1 N4 ? ? A DC 1 B DC 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DC 2 O2 ? ? A DC 2 B DC 6 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DC 2 N4 ? ? A DC 2 B DC 6 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog5 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DC 3 O2 ? ? A DC 3 B DC 7 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog6 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DC 3 N4 ? ? A DC 3 B DC 7 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog7 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DC 1 O2 ? ? C DC 9 D DC 13 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog8 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DC 1 N4 ? ? C DC 9 D DC 13 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog9 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DC 2 O2 ? ? C DC 10 D DC 14 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog10 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DC 2 N4 ? ? C DC 10 D DC 14 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog11 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DC 3 O2 ? ? C DC 11 D DC 15 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog12 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DC 3 N4 ? ? C DC 11 D DC 15 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? B DT 4 ? B DT 8 ? 1_555 NA ? F NA . ? B NA 17 ? 1_555 O ? K HOH . ? D HOH 69 ? 1_555 122.5 ? 2 O ? J HOH . ? C HOH 35 ? 1_555 NA ? G NA . ? C NA 18 ? 1_555 O ? J HOH . ? C HOH 42 ? 1_555 143.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NA 17 ? 5 'BINDING SITE FOR RESIDUE NA B 17' AC2 Software C NA 18 ? 5 'BINDING SITE FOR RESIDUE NA C 18' AC3 Software A NA 19 ? 4 'BINDING SITE FOR RESIDUE NA A 19' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DT B 4 ? DT B 8 . ? 1_555 ? 2 AC1 5 DT C 4 ? DT C 12 . ? 5_455 ? 3 AC1 5 DT D 4 ? DT D 16 . ? 7_556 ? 4 AC1 5 HOH K . ? HOH D 31 . ? 3_556 ? 5 AC1 5 HOH K . ? HOH D 69 . ? 1_555 ? 6 AC2 5 DC A 2 ? DC A 2 . ? 3_656 ? 7 AC2 5 DC A 3 ? DC A 3 . ? 3_656 ? 8 AC2 5 DC C 3 ? DC C 11 . ? 1_555 ? 9 AC2 5 HOH J . ? HOH C 35 . ? 1_555 ? 10 AC2 5 HOH J . ? HOH C 42 . ? 1_555 ? 11 AC3 4 DC A 1 ? DC A 1 . ? 1_555 ? 12 AC3 4 DC A 2 ? DC A 2 . ? 1_555 ? 13 AC3 4 HOH H . ? HOH A 44 . ? 3_656 ? 14 AC3 4 HOH J . ? HOH C 43 . ? 3_656 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 79 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 45 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O D HOH 68 ? ? 1_555 O D HOH 68 ? ? 3_556 1.42 2 1 O D HOH 80 ? ? 1_555 O D HOH 80 ? ? 3_556 1.75 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.376 1.419 -0.043 0.006 N 2 1 "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 1.454 1.516 -0.062 0.008 N 3 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? 1.376 1.446 -0.070 0.010 N 4 1 P A DC 3 ? ? "O5'" A DC 3 ? ? 1.656 1.593 0.063 0.010 N 5 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 1.374 1.446 -0.072 0.010 N 6 1 N1 A DC 3 ? ? C6 A DC 3 ? ? 1.326 1.367 -0.041 0.006 N 7 1 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.558 1.496 0.062 0.006 N 8 1 "C5'" B DC 5 ? ? "C4'" B DC 5 ? ? 1.593 1.512 0.081 0.007 N 9 1 "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 1.620 1.529 0.091 0.010 N 10 1 "O3'" B DC 6 ? ? P B DC 7 ? ? 1.679 1.607 0.072 0.012 Y 11 1 "C5'" B DT 8 ? ? "C4'" B DT 8 ? ? 1.561 1.512 0.049 0.007 N 12 1 "C5'" C DC 9 ? ? "C4'" C DC 9 ? ? 1.581 1.512 0.069 0.007 N 13 1 N1 C DC 9 ? ? C6 C DC 9 ? ? 1.418 1.367 0.051 0.006 N 14 1 C4 C DC 9 ? ? C5 C DC 9 ? ? 1.478 1.425 0.053 0.008 N 15 1 "O3'" C DC 9 ? ? P C DC 10 ? ? 1.711 1.607 0.104 0.012 Y 16 1 P C DC 11 ? ? "O5'" C DC 11 ? ? 1.662 1.593 0.069 0.010 N 17 1 "C5'" C DC 11 ? ? "C4'" C DC 11 ? ? 1.575 1.512 0.063 0.007 N 18 1 N1 C DC 11 ? ? C6 C DC 11 ? ? 1.331 1.367 -0.036 0.006 N 19 1 "C4'" C DT 12 ? ? "C3'" C DT 12 ? ? 1.613 1.529 0.084 0.010 N 20 1 N1 C DT 12 ? ? C2 C DT 12 ? ? 1.430 1.376 0.054 0.008 N 21 1 C5 C DT 12 ? ? C7 C DT 12 ? ? 1.542 1.496 0.046 0.006 N 22 1 "C4'" D DC 13 ? ? "C3'" D DC 13 ? ? 1.604 1.529 0.075 0.010 N 23 1 P D DC 15 ? ? "O5'" D DC 15 ? ? 1.655 1.593 0.062 0.010 N 24 1 "C5'" D DC 15 ? ? "C4'" D DC 15 ? ? 1.427 1.509 -0.082 0.011 N 25 1 N1 D DT 16 ? ? C2 D DT 16 ? ? 1.314 1.376 -0.062 0.008 N 26 1 C5 D DT 16 ? ? C7 D DT 16 ? ? 1.574 1.496 0.078 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 100.60 104.50 -3.90 0.40 N 2 1 "C1'" A DC 1 ? ? "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 114.52 110.30 4.22 0.70 N 3 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? "C2'" A DC 2 ? ? 110.28 106.80 3.48 0.50 N 4 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.57 108.30 2.27 0.30 N 5 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 110.05 106.80 3.25 0.50 N 6 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 110.27 106.80 3.47 0.50 N 7 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 103.31 108.00 -4.69 0.70 N 8 1 N3 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 113.75 119.90 -6.15 0.60 N 9 1 C4 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 123.01 119.00 4.01 0.60 N 10 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.28 122.90 -3.62 0.60 N 11 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? "C2'" B DC 5 ? ? 110.95 106.80 4.15 0.50 N 12 1 "O3'" B DC 5 ? ? P B DC 6 ? ? "O5'" B DC 6 ? ? 92.05 104.00 -11.95 1.90 Y 13 1 "O4'" B DC 6 ? ? "C4'" B DC 6 ? ? "C3'" B DC 6 ? ? 112.59 106.00 6.59 0.60 N 14 1 "C1'" B DC 6 ? ? "O4'" B DC 6 ? ? "C4'" B DC 6 ? ? 100.15 110.10 -9.95 1.00 N 15 1 "O3'" B DC 6 ? ? P B DC 7 ? ? "O5'" B DC 7 ? ? 90.32 104.00 -13.68 1.90 Y 16 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 102.92 108.00 -5.08 0.70 N 17 1 C4 B DT 8 ? ? C5 B DT 8 ? ? C7 B DT 8 ? ? 123.94 119.00 4.94 0.60 N 18 1 "O4'" C DC 9 ? ? "C1'" C DC 9 ? ? N1 C DC 9 ? ? 110.36 108.30 2.06 0.30 N 19 1 P C DC 10 ? ? "O5'" C DC 10 ? ? "C5'" C DC 10 ? ? 134.57 120.90 13.67 1.60 N 20 1 "C1'" C DC 10 ? ? "O4'" C DC 10 ? ? "C4'" C DC 10 ? ? 103.92 110.10 -6.18 1.00 N 21 1 "O4'" C DC 10 ? ? "C1'" C DC 10 ? ? "C2'" C DC 10 ? ? 111.02 106.80 4.22 0.50 N 22 1 "O4'" C DC 11 ? ? "C1'" C DC 11 ? ? "C2'" C DC 11 ? ? 110.17 106.80 3.37 0.50 N 23 1 "O4'" C DT 12 ? ? "C1'" C DT 12 ? ? "C2'" C DT 12 ? ? 110.80 106.80 4.00 0.50 N 24 1 C2 D DC 13 ? ? N3 D DC 13 ? ? C4 D DC 13 ? ? 125.03 119.90 5.13 0.50 N 25 1 N3 D DC 13 ? ? C4 D DC 13 ? ? C5 D DC 13 ? ? 118.47 121.90 -3.43 0.40 N 26 1 "O5'" D DC 14 ? ? "C5'" D DC 14 ? ? "C4'" D DC 14 ? ? 98.41 109.40 -10.99 0.80 N 27 1 C2 D DC 14 ? ? N3 D DC 14 ? ? C4 D DC 14 ? ? 123.52 119.90 3.62 0.50 N 28 1 "O4'" D DC 15 ? ? "C1'" D DC 15 ? ? "C2'" D DC 15 ? ? 110.04 106.80 3.24 0.50 N 29 1 "O4'" D DC 15 ? ? "C1'" D DC 15 ? ? N1 D DC 15 ? ? 103.44 108.00 -4.56 0.70 N 30 1 "C4'" D DT 16 ? ? "C3'" D DT 16 ? ? "C2'" D DT 16 ? ? 97.81 102.20 -4.39 0.70 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 3 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.066 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 20 ? H HOH . 2 1 D HOH 81 ? K HOH . # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DT OP3 O N N 35 DT P P N N 36 DT OP1 O N N 37 DT OP2 O N N 38 DT "O5'" O N N 39 DT "C5'" C N N 40 DT "C4'" C N R 41 DT "O4'" O N N 42 DT "C3'" C N S 43 DT "O3'" O N N 44 DT "C2'" C N N 45 DT "C1'" C N R 46 DT N1 N N N 47 DT C2 C N N 48 DT O2 O N N 49 DT N3 N N N 50 DT C4 C N N 51 DT O4 O N N 52 DT C5 C N N 53 DT C7 C N N 54 DT C6 C N N 55 DT HOP3 H N N 56 DT HOP2 H N N 57 DT "H5'" H N N 58 DT "H5''" H N N 59 DT "H4'" H N N 60 DT "H3'" H N N 61 DT "HO3'" H N N 62 DT "H2'" H N N 63 DT "H2''" H N N 64 DT "H1'" H N N 65 DT H3 H N N 66 DT H71 H N N 67 DT H72 H N N 68 DT H73 H N N 69 DT H6 H N N 70 HOH O O N N 71 HOH H1 H N N 72 HOH H2 H N N 73 NA NA NA N N 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DT OP3 P sing N N 36 DT OP3 HOP3 sing N N 37 DT P OP1 doub N N 38 DT P OP2 sing N N 39 DT P "O5'" sing N N 40 DT OP2 HOP2 sing N N 41 DT "O5'" "C5'" sing N N 42 DT "C5'" "C4'" sing N N 43 DT "C5'" "H5'" sing N N 44 DT "C5'" "H5''" sing N N 45 DT "C4'" "O4'" sing N N 46 DT "C4'" "C3'" sing N N 47 DT "C4'" "H4'" sing N N 48 DT "O4'" "C1'" sing N N 49 DT "C3'" "O3'" sing N N 50 DT "C3'" "C2'" sing N N 51 DT "C3'" "H3'" sing N N 52 DT "O3'" "HO3'" sing N N 53 DT "C2'" "C1'" sing N N 54 DT "C2'" "H2'" sing N N 55 DT "C2'" "H2''" sing N N 56 DT "C1'" N1 sing N N 57 DT "C1'" "H1'" sing N N 58 DT N1 C2 sing N N 59 DT N1 C6 sing N N 60 DT C2 O2 doub N N 61 DT C2 N3 sing N N 62 DT N3 C4 sing N N 63 DT N3 H3 sing N N 64 DT C4 O4 doub N N 65 DT C4 C5 sing N N 66 DT C5 C7 sing N N 67 DT C5 C6 doub N N 68 DT C7 H71 sing N N 69 DT C7 H72 sing N N 70 DT C7 H73 sing N N 71 DT C6 H6 sing N N 72 HOH O H1 sing N N 73 HOH O H2 sing N N 74 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 191D 'double helix' 191D 'parallel strands' 191D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DC 1 1_555 -2.027 -1.195 -0.104 7.330 -9.064 -179.417 1 A_DC1:DC5_B A 1 ? B 5 ? 15 2 1 D DC 3 1_555 C DC 3 1_555 -1.998 -1.148 -0.403 5.563 2.000 -179.394 2 D_DC15:DC11_C D 15 ? C 11 ? 15 2 1 A DC 2 1_555 B DC 2 1_555 1.913 1.255 -0.009 0.589 -0.666 179.049 3 A_DC2:DC6_B A 2 ? B 6 ? 15 2 1 D DC 2 1_555 C DC 2 1_555 2.021 1.274 -0.089 -7.911 -2.171 178.895 4 D_DC14:DC10_C D 14 ? C 10 ? 15 2 1 A DC 3 1_555 B DC 3 1_555 -1.968 -1.310 0.275 0.439 0.447 -179.669 5 A_DC3:DC7_B A 3 ? B 7 ? 15 2 1 D DC 1 1_555 C DC 1 1_555 -2.039 -1.348 0.036 3.938 0.460 -179.500 6 D_DC13:DC9_C D 13 ? C 9 ? 15 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DC 1 1_555 D DC 3 1_555 C DC 3 1_555 -2.517 2.271 -0.171 122.409 121.467 -114.312 -1.114 -1.282 -0.042 -61.158 61.632 -175.906 1 AD_DC1DC15:DC11DC5_CB A 1 ? B 5 ? D 15 ? C 11 ? 1 D DC 3 1_555 C DC 3 1_555 A DC 2 1_555 B DC 2 1_555 -2.778 -1.756 0.036 97.060 -144.259 -123.553 0.890 -1.381 0.075 72.431 48.733 -177.103 2 DA_DC15DC2:DC6DC11_BC D 15 ? C 11 ? A 2 ? B 6 ? 1 A DC 2 1_555 B DC 2 1_555 D DC 2 1_555 C DC 2 1_555 -1.815 2.454 0.017 133.907 115.649 48.352 1.178 0.965 0.217 58.416 -67.638 177.204 3 AD_DC2DC14:DC10DC6_CB A 2 ? B 6 ? D 14 ? C 10 ? 1 D DC 2 1_555 C DC 2 1_555 A DC 3 1_555 B DC 3 1_555 -2.711 -1.726 0.087 95.298 -145.182 127.320 -0.849 1.365 0.059 -72.865 -47.829 177.190 4 DA_DC14DC3:DC7DC10_BC D 14 ? C 10 ? A 3 ? B 7 ? 1 A DC 3 1_555 B DC 3 1_555 D DC 1 1_555 C DC 1 1_555 -2.489 2.078 -0.080 129.806 122.709 109.274 1.079 1.202 -0.286 61.442 -64.995 179.204 5 AD_DC3DC13:DC9DC7_CB A 3 ? B 7 ? D 13 ? C 9 ? # _atom_sites.entry_id 191D _atom_sites.fract_transf_matrix[1][1] 0.035359 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022552 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019813 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NA O P # loop_