data_193D
# 
_entry.id   193D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.287 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
PDB   193D         
WWPDB D_1000170207 
# 
loop_
_pdbx_database_related.db_name 
_pdbx_database_related.db_id 
_pdbx_database_related.content_type 
_pdbx_database_related.details 
PDB 185D unspecified 'SOLUTION STRUCTURE OF D(GACGTC) COMPLEXED WITH TRIOSTIN A'                                 
PDB 1PFE unspecified 'CRYSTAL STRUCTURE OF D(GCGTACG) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P6322'            
PDB 1VS2 unspecified 'CRYSTAL STRUCTURE OF D(GCGTACGC) COMPLEXED WITH TRIOSIN A'                                 
PDB 1XVK unspecified 'CRYSTAL STRUCTURE OF D(GCGTACGC) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P632'            
PDB 1XVN unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P632'            
PDB 1XVR unspecified 'CRYSTAL STRUCTURE OF D(CGTACG) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP C21'               
PDB 2ADW unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P42212'          
PDB 2DA8 unspecified 'SOLUTION STRUCTURE OF D(GATATC) COMPLEXED WITH A MODIFIED TRIOSTIN A AT POSITIONS 4 AND 8' 
PDB 3GO3 unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P41212'          
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        193D 
_pdbx_database_status.recvd_initial_deposition_date   1994-09-30 
_pdbx_database_status.deposit_site                    ? 
_pdbx_database_status.process_site                    BNL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Chen, H.'    1 
'Patel, D.J.' 2 
# 
_citation.id                        primary 
_citation.title                     'Solution Structure of a Quinomycin Bisintercalator-DNA Complex.' 
_citation.journal_abbrev            J.Mol.Biol. 
_citation.journal_volume            246 
_citation.page_first                164 
_citation.page_last                 ? 
_citation.year                      1995 
_citation.journal_id_ASTM           JMOBAK 
_citation.country                   UK 
_citation.journal_id_ISSN           0022-2836 
_citation.journal_id_CSD            0070 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   7853395 
_citation.pdbx_database_id_DOI      10.1006/JMBI.1994.0074 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
primary 'Chen, H.'    1 
primary 'Patel, D.J.' 2 
# 
_cell.entry_id           193D 
_cell.length_a           1.000 
_cell.length_b           1.000 
_cell.length_c           1.000 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              1 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         193D 
_symmetry.space_group_name_H-M             'P 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                1 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*AP*CP*AP*CP*GP*TP*GP*T)-3')
;
2426.617 2 ? ? ? ? 
2 polymer     syn QUINOMYCIN                               847.056  1 ? ? ? ? 
3 non-polymer syn '3-HYDROXYQUINALDIC ACID'                189.167  2 ? ? ? ? 
# 
_entity_name_com.entity_id   2 
_entity_name_com.name        'QUINOMYCIN A, UK-63052' 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 polydeoxyribonucleotide no no  '(DA)(DC)(DA)(DC)(DG)(DT)(DG)(DT)' ACACGTGT A,B ? 
2 'polypeptide(L)'        no yes '(DSN)A(NYB)(CPC)(DSN)A(NCY)(CPC)' SAXXSAXX C   ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 DA  n 
1 2 DC  n 
1 3 DA  n 
1 4 DC  n 
1 5 DG  n 
1 6 DT  n 
1 7 DG  n 
1 8 DT  n 
2 1 DSN n 
2 2 ALA n 
2 3 NYB n 
2 4 CPC n 
2 5 DSN n 
2 6 ALA n 
2 7 NCY n 
2 8 CPC n 
# 
loop_
_pdbx_entity_src_syn.entity_id 
_pdbx_entity_src_syn.pdbx_src_id 
_pdbx_entity_src_syn.pdbx_alt_source_flag 
_pdbx_entity_src_syn.pdbx_beg_seq_num 
_pdbx_entity_src_syn.pdbx_end_seq_num 
_pdbx_entity_src_syn.organism_scientific 
_pdbx_entity_src_syn.organism_common_name 
_pdbx_entity_src_syn.ncbi_taxonomy_id 
_pdbx_entity_src_syn.details 
1 1 sample ? ? ?            ? ? 'CHEMICALLY SYNTHESIZED' 
2 1 sample ? ? STREPTOMYCES ? ? 'CHEMICALLY SYNTHESIZED' 
# 
loop_
_struct_ref.id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.entity_id 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_align_begin 
_struct_ref.pdbx_db_accession 
_struct_ref.pdbx_db_isoform 
1 PDB 193D 1 ? ? 193D ? 
2 PDB 193D 2 ? ? 193D ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 193D A 1 ? 8 ? 193D 1 ? 8 ? 1 8 
2 1 193D B 1 ? 8 ? 193D 1 ? 8 ? 1 8 
3 2 193D C 1 ? 8 ? 193D 1 ? 8 ? 1 8 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
ALA 'L-peptide linking' y ALANINE                                               ? 'C3 H7 N O2'      89.093  
CPC 'L-peptide linking' . '2-METHYL-1-METHYLAMINO-CYCLOPROPANE CARBOXYLIC ACID' ? 'C6 H11 N O2'     129.157 
DA  'DNA linking'       y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"                  ? 'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking'       y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"                   ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking'       y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"                  ? 'C10 H14 N5 O7 P' 347.221 
DSN 'D-peptide linking' . D-SERINE                                              ? 'C3 H7 N O3'      105.093 
DT  'DNA linking'       y "THYMIDINE-5'-MONOPHOSPHATE"                          ? 'C10 H15 N2 O8 P' 322.208 
HQU non-polymer         . '3-HYDROXYQUINALDIC ACID'                             ? 'C10 H7 N O3'     189.167 
NCY 'L-peptide linking' . N-METHYLCYSTEINE                                      ? 'C4 H9 N O2 S'    135.185 
NYB 'L-peptide linking' n 'N-METHYL-S-[(1R)-1-METHYLPROPYL]-L-CYSTEINE'         ? 'C8 H17 N O2 S'   191.291 
# 
_pdbx_nmr_sample_details.solution_id      1 
_pdbx_nmr_sample_details.contents         ? 
_pdbx_nmr_sample_details.solvent_system   D2O 
# 
_pdbx_nmr_refine.entry_id           193D 
_pdbx_nmr_refine.method             'MOLECULAR DYNAMICS, MATRIX RELAXATION' 
_pdbx_nmr_refine.details            
;TWO STARTING STRUCTURES WERE GENERATED BY MANUALLY DOCKING THE DRUG ONTO A- AND B-FORM DNA USING INSIGHT II AND WERE SUBSEQUENTLY REFINED BY DISTANCE- RESTRAINED MOLECULAR DYNAMICS USING A SET OF INTER-PROTON DISTANCE RESTRAINTS DERIVED FROM THE NMR DATA. TWO INITIAL VELOCITY SEEDS WERE USED FOR EACH STARTING STRUCTURE WHICH YIELDS FOUR DISTANCE-REFINED STRUCTURES. THEY WERE REFINED FURTHER USING RELAXATION-MATRIX BASED NOE INTENSITY-RESTRAINED MOLECULAR DYNAMICS. THE FINAL FOUR STRUCTURES WERE OBTAINED BY TAKING THE AVERAGE COORDINATES OF THE LAST 0.5 PS OF THE DYNAMICS DURING RELAXATION MATRIX REFINEMENT AND ENERGY MINIMIZED. THE R(1/6) VALUE WAS USED TO REFINE THE STRUCTURE DURING RELAXATION MATRIX REFINEMENT. THE SUMMATIONS RUN THROUGH ALL OBSERVED, QUANTIFIABLE NOE CROSSPEAKS IN NOESY SPECTRA RECORDED IN D2O AND MIXING TIMES OF 30, 60, 120 AND 180 MS. THE R(1/6) FACTOR AND THE RMS DEVIATIONS FROM IDEAL GEOMETRY FOR THE FOUR FINAL STRUCTURES ARE: MODEL1 MODEL2 MODEL3 MODEL4 R(1/6) FACTOR 0.023 0.024 0.024 0.026 BOND (ANG) 0.011 0.011 0.011 0.011 ANGLES (DEG) 3.616 3.657 3.700 3.725 IMPROPERS (DEG) 0.274 0.285 0.241 0.298
;
_pdbx_nmr_refine.software_ordinal   1 
# 
_pdbx_nmr_ensemble.entry_id                                      193D 
_pdbx_nmr_ensemble.conformers_calculated_total_number            4 
_pdbx_nmr_ensemble.conformers_submitted_total_number             4 
_pdbx_nmr_ensemble.conformer_selection_criteria                  'all calculated structures submitted' 
_pdbx_nmr_ensemble.average_constraints_per_residue               ? 
_pdbx_nmr_ensemble.average_constraint_violations_per_residue     ? 
_pdbx_nmr_ensemble.maximum_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.average_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.distance_constraint_violation_method          ? 
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method     ? 
# 
_pdbx_nmr_software.classification   refinement 
_pdbx_nmr_software.name             X-PLOR 
_pdbx_nmr_software.version          ? 
_pdbx_nmr_software.authors          BRUNGER 
_pdbx_nmr_software.ordinal          1 
# 
_exptl.entry_id          193D 
_exptl.method            'SOLUTION NMR' 
_exptl.crystals_number   ? 
# 
_struct.entry_id                  193D 
_struct.title                     'SOLUTION STRUCTURE OF A QUINOMYCIN BISINTERCALATOR-DNA COMPLEX' 
_struct.pdbx_descriptor           'QUINOMYCIN/DNA Complex, 3-HYDROXYQUINALDIC ACID' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        193D 
_struct_keywords.pdbx_keywords   DNA/ANTIBIOTIC 
_struct_keywords.text            
'BISINTERCALATOR, DEPSIPEPTIDE, QUINOXALINE, THIOACETAL, ANTIBIOTIC, ANTITUMOR, DNA-ANTIBIOTIC COMPLEX' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 3 ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
covale1  covale ? ? D HQU . C  ? ? ? 1_555 C DSN 1 N  ? ? C HQU 0 C DSN 1 1_555 ? ? ? ? ? ? ?            1.312 ? 
covale2  covale ? ? C DSN 1 C  ? ? ? 1_555 C ALA 2 N  ? ? C DSN 1 C ALA 2 1_555 ? ? ? ? ? ? ?            1.314 ? 
covale3  covale ? ? C DSN 1 OG ? ? ? 1_555 C CPC 8 C  ? ? C DSN 1 C CPC 8 1_555 ? ? ? ? ? ? ?            1.386 ? 
covale4  covale ? ? C ALA 2 C  ? ? ? 1_555 C NYB 3 N  ? ? C ALA 2 C NYB 3 1_555 ? ? ? ? ? ? ?            1.333 ? 
covale5  covale ? ? C NYB 3 CB ? ? ? 1_555 C NCY 7 SG ? ? C NYB 3 C NCY 7 1_555 ? ? ? ? ? ? ?            1.808 ? 
covale6  covale ? ? C NYB 3 C  ? ? ? 1_555 C CPC 4 N  ? ? C NYB 3 C CPC 4 1_555 ? ? ? ? ? ? ?            1.332 ? 
covale7  covale ? ? C CPC 4 C  ? ? ? 1_555 C DSN 5 OG ? ? C CPC 4 C DSN 5 1_555 ? ? ? ? ? ? ?            1.394 ? 
covale8  covale ? ? C DSN 5 C  ? ? ? 1_555 C ALA 6 N  ? ? C DSN 5 C ALA 6 1_555 ? ? ? ? ? ? ?            1.312 ? 
covale9  covale ? ? C DSN 5 N  ? ? ? 1_555 E HQU . C  ? ? C DSN 5 C HQU 9 1_555 ? ? ? ? ? ? ?            1.313 ? 
covale10 covale ? ? C ALA 6 C  ? ? ? 1_555 C NCY 7 N  ? ? C ALA 6 C NCY 7 1_555 ? ? ? ? ? ? ?            1.332 ? 
covale11 covale ? ? C NCY 7 C  ? ? ? 1_555 C CPC 8 N  ? ? C NCY 7 C CPC 8 1_555 ? ? ? ? ? ? ?            1.326 ? 
hydrog1  hydrog ? ? A DA  1 N1 ? ? ? 1_555 B DT  8 N3 ? ? A DA  1 B DT  8 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog2  hydrog ? ? A DA  1 N6 ? ? ? 1_555 B DT  8 O4 ? ? A DA  1 B DT  8 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog3  hydrog ? ? A DC  2 N3 ? ? ? 1_555 B DG  7 N1 ? ? A DC  2 B DG  7 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog4  hydrog ? ? A DC  2 N4 ? ? ? 1_555 B DG  7 O6 ? ? A DC  2 B DG  7 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog5  hydrog ? ? A DC  2 O2 ? ? ? 1_555 B DG  7 N2 ? ? A DC  2 B DG  7 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog6  hydrog ? ? A DA  3 N1 ? ? ? 1_555 B DT  6 N3 ? ? A DA  3 B DT  6 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog7  hydrog ? ? A DA  3 N6 ? ? ? 1_555 B DT  6 O4 ? ? A DA  3 B DT  6 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog8  hydrog ? ? A DC  4 N3 ? ? ? 1_555 B DG  5 N1 ? ? A DC  4 B DG  5 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog9  hydrog ? ? A DC  4 N4 ? ? ? 1_555 B DG  5 O6 ? ? A DC  4 B DG  5 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog10 hydrog ? ? A DC  4 O2 ? ? ? 1_555 B DG  5 N2 ? ? A DC  4 B DG  5 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog11 hydrog ? ? A DG  5 N1 ? ? ? 1_555 B DC  4 N3 ? ? A DG  5 B DC  4 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog12 hydrog ? ? A DG  5 N2 ? ? ? 1_555 B DC  4 O2 ? ? A DG  5 B DC  4 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog13 hydrog ? ? A DG  5 O6 ? ? ? 1_555 B DC  4 N4 ? ? A DG  5 B DC  4 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog14 hydrog ? ? A DT  6 N3 ? ? ? 1_555 B DA  3 N1 ? ? A DT  6 B DA  3 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog15 hydrog ? ? A DT  6 O4 ? ? ? 1_555 B DA  3 N6 ? ? A DT  6 B DA  3 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog16 hydrog ? ? A DG  7 N1 ? ? ? 1_555 B DC  2 N3 ? ? A DG  7 B DC  2 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog17 hydrog ? ? A DG  7 N2 ? ? ? 1_555 B DC  2 O2 ? ? A DG  7 B DC  2 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog18 hydrog ? ? A DG  7 O6 ? ? ? 1_555 B DC  2 N4 ? ? A DG  7 B DC  2 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog19 hydrog ? ? A DT  8 N3 ? ? ? 1_555 B DA  1 N1 ? ? A DT  8 B DA  1 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
hydrog20 hydrog ? ? A DT  8 O4 ? ? ? 1_555 B DA  1 N6 ? ? A DT  8 B DA  1 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
_struct_site.id                   AC1 
_struct_site.pdbx_evidence_code   Software 
_struct_site.pdbx_auth_asym_id    ? 
_struct_site.pdbx_auth_comp_id    ? 
_struct_site.pdbx_auth_seq_id     ? 
_struct_site.pdbx_auth_ins_code   ? 
_struct_site.pdbx_num_residues    8 
_struct_site.details              'BINDING SITE FOR CHAIN C OF QUINOMYCIN' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1 AC1 8 DA A 3 ? DA A 3 . ? 1_555 ? 
2 AC1 8 DC A 4 ? DC A 4 . ? 1_555 ? 
3 AC1 8 DG A 5 ? DG A 5 . ? 1_555 ? 
4 AC1 8 DT A 6 ? DT A 6 . ? 1_555 ? 
5 AC1 8 DA B 3 ? DA B 3 . ? 1_555 ? 
6 AC1 8 DC B 4 ? DC B 4 . ? 1_555 ? 
7 AC1 8 DG B 5 ? DG B 5 . ? 1_555 ? 
8 AC1 8 DT B 6 ? DT B 6 . ? 1_555 ? 
# 
_database_PDB_matrix.entry_id          193D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    193D 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_sites_footnote.id 
_atom_sites_footnote.text 
1 'ALA D 2 - CYS D 3 MODEL 1 OMEGA = 0.00 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION'   
2 'ALA C 2 - CYS C 3 MODEL 2 OMEGA = 0.00 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION'   
3 'ALA D 2 - CYS D 3 MODEL 3 OMEGA = 0.00 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION'   
4 'ALA D 2 - CYS D 3 MODEL 4 OMEGA = 359.98 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION' 
7 'SER C 1 IS A D-SERINE.'                                                                               
8 'SER D 1 IS A D-SERINE.'                                                                               
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
P 
S 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 DA  1 1 1 DA  DA  A . n 
A 1 2 DC  2 2 2 DC  DC  A . n 
A 1 3 DA  3 3 3 DA  DA  A . n 
A 1 4 DC  4 4 4 DC  DC  A . n 
A 1 5 DG  5 5 5 DG  DG  A . n 
A 1 6 DT  6 6 6 DT  DT  A . n 
A 1 7 DG  7 7 7 DG  DG  A . n 
A 1 8 DT  8 8 8 DT  DT  A . n 
B 1 1 DA  1 1 1 DA  DA  B . n 
B 1 2 DC  2 2 2 DC  DC  B . n 
B 1 3 DA  3 3 3 DA  DA  B . n 
B 1 4 DC  4 4 4 DC  DC  B . n 
B 1 5 DG  5 5 5 DG  DG  B . n 
B 1 6 DT  6 6 6 DT  DT  B . n 
B 1 7 DG  7 7 7 DG  DG  B . n 
B 1 8 DT  8 8 8 DT  DT  B . n 
C 2 1 DSN 1 1 1 DSN DSN C . n 
C 2 2 ALA 2 2 2 ALA ALA C . n 
C 2 3 NYB 3 3 3 NYB NYB C . n 
C 2 4 CPC 4 4 4 CPC CPC C . n 
C 2 5 DSN 5 5 5 DSN DSN C . n 
C 2 6 ALA 6 6 6 ALA ALA C . n 
C 2 7 NCY 7 7 7 NCY NCY C . n 
C 2 8 CPC 8 8 8 CPC CPC C . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
D 3 HQU 1 0 0 HQU HQU C . 
E 3 HQU 1 9 9 HQU HQU C . 
# 
_pdbx_molecule_features.prd_id    PRD_000492 
_pdbx_molecule_features.name      uk63052 
_pdbx_molecule_features.type      'Cyclic depsipeptide' 
_pdbx_molecule_features.class     Antibiotic 
_pdbx_molecule_features.details   
;QUINOMYCIN UK63052 IS A BICYCLIC OCTADEPSIPEPTIDE.            
 BICYCLIZATION IS ACHIEVED BY LINKING THE N- AND       
 THE C- TERMINI, AND A THIOACETAL BOND BETWEEN     
 RESIDUES 3 AND 7.                                     
 THE TWO HYDROXYQUINOXALINE CHROMOPHORES ARE LINKED    
 TO THE D-SERINE RESIDUES, RESIDUES 1 AND 5.
;
# 
loop_
_pdbx_molecule.instance_id 
_pdbx_molecule.prd_id 
_pdbx_molecule.asym_id 
1 PRD_000492 C 
1 PRD_000492 D 
1 PRD_000492 E 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   trimeric 
_pdbx_struct_assembly.oligomeric_count     3 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   ? 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1995-02-27 
2 'Structure model' 1 1 2011-06-14 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2011-07-27 
5 'Structure model' 1 4 2012-12-12 
6 'Structure model' 2 0 2017-11-01 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1  2 'Structure model' 'Version format compliance' 
2  3 'Structure model' 'Version format compliance' 
3  4 'Structure model' 'Atomic model'              
4  4 'Structure model' 'Database references'       
5  4 'Structure model' 'Derived calculations'      
6  4 'Structure model' 'Non-polymer description'   
7  4 'Structure model' 'Structure summary'         
8  5 'Structure model' Other                       
9  6 'Structure model' Advisory                    
10 6 'Structure model' 'Atomic model'              
11 6 'Structure model' 'Derived calculations'      
12 6 'Structure model' Other                       
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 6 'Structure model' atom_site                     
2 6 'Structure model' pdbx_database_status          
3 6 'Structure model' pdbx_struct_assembly          
4 6 'Structure model' pdbx_struct_oper_list         
5 6 'Structure model' pdbx_validate_polymer_linkage 
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 6 'Structure model' '_atom_site.auth_atom_id'                   
2 6 'Structure model' '_atom_site.label_atom_id'                  
3 6 'Structure model' '_pdbx_database_status.process_site'        
4 6 'Structure model' '_pdbx_struct_assembly.details'             
5 6 'Structure model' '_pdbx_struct_assembly.method_details'      
6 6 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
X-PLOR 'model building' . ? 1 
X-PLOR refinement       . ? 2 
X-PLOR phasing          . ? 3 
# 
_pdbx_entry_details.entry_id             193D 
_pdbx_entry_details.compound_details     
;QUINOMYCIN UK63052 IS A BICYCLIC OCTADEPSIPEPTIDE, 
 A MEMBER OF THE QUINOXALINE CLASS OF ANTIBIOTICS.                             
 HERE, QUINOMYCIN IS REPRESENTED BY GROUPING TOGETHER THE              
 SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) HQU
;
_pdbx_entry_details.source_details       ? 
_pdbx_entry_details.nonpolymer_details   ? 
_pdbx_entry_details.sequence_details     ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1 C8 A DA 1 ? ? N9 A DA 1 ? ? 1.325 1.373 -0.048 0.008 N 
2  1 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.536 1.496 0.040  0.006 N 
3  1 C5 B DT 6 ? ? C7 B DT 6 ? ? 1.537 1.496 0.041  0.006 N 
4  1 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.535 1.496 0.039  0.006 N 
5  2 C8 A DA 1 ? ? N9 A DA 1 ? ? 1.324 1.373 -0.049 0.008 N 
6  2 C8 B DA 1 ? ? N9 B DA 1 ? ? 1.325 1.373 -0.048 0.008 N 
7  2 C5 B DT 6 ? ? C7 B DT 6 ? ? 1.533 1.496 0.037  0.006 N 
8  2 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.534 1.496 0.038  0.006 N 
9  3 C8 A DA 1 ? ? N9 A DA 1 ? ? 1.323 1.373 -0.050 0.008 N 
10 3 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.536 1.496 0.040  0.006 N 
11 3 C8 B DA 1 ? ? N9 B DA 1 ? ? 1.324 1.373 -0.049 0.008 N 
12 3 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.537 1.496 0.041  0.006 N 
13 4 C8 A DA 1 ? ? N9 A DA 1 ? ? 1.320 1.373 -0.053 0.008 N 
14 4 C8 B DA 1 ? ? N9 B DA 1 ? ? 1.322 1.373 -0.051 0.008 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1   1 N7    A DA 1 ? ? C8    A DA 1 ? ? N9    A DA 1 ? ? 118.09 113.80 4.29  0.50 N 
2   1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1    A DC 2 ? ? 103.76 108.00 -4.24 0.70 N 
3   1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? "C2'" A DG 5 ? ? 100.47 105.90 -5.43 0.80 N 
4   1 N7    A DG 5 ? ? C8    A DG 5 ? ? N9    A DG 5 ? ? 116.27 113.10 3.17  0.50 N 
5   1 C8    A DG 5 ? ? N9    A DG 5 ? ? C4    A DG 5 ? ? 103.87 106.40 -2.53 0.40 N 
6   1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1    A DT 6 ? ? 110.76 108.30 2.46  0.30 N 
7   1 C6    A DT 6 ? ? C5    A DT 6 ? ? C7    A DT 6 ? ? 118.46 122.90 -4.44 0.60 N 
8   1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9    A DG 7 ? ? 111.03 108.30 2.72  0.30 N 
9   1 N7    A DG 7 ? ? C8    A DG 7 ? ? N9    A DG 7 ? ? 116.19 113.10 3.09  0.50 N 
10  1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1    A DT 8 ? ? 110.55 108.30 2.25  0.30 N 
11  1 N7    B DA 1 ? ? C8    B DA 1 ? ? N9    B DA 1 ? ? 117.96 113.80 4.16  0.50 N 
12  1 N1    B DC 2 ? ? C2    B DC 2 ? ? O2    B DC 2 ? ? 122.53 118.90 3.63  0.60 N 
13  1 "C3'" B DC 2 ? ? "O3'" B DC 2 ? ? P     B DA 3 ? ? 127.28 119.70 7.58  1.20 Y 
14  1 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1    B DC 4 ? ? 110.78 108.30 2.48  0.30 N 
15  1 N1    B DC 4 ? ? C2    B DC 4 ? ? O2    B DC 4 ? ? 123.04 118.90 4.14  0.60 N 
16  1 "C1'" B DT 6 ? ? "O4'" B DT 6 ? ? "C4'" B DT 6 ? ? 103.55 110.10 -6.55 1.00 N 
17  1 "O4'" B DT 6 ? ? "C1'" B DT 6 ? ? N1    B DT 6 ? ? 113.27 108.30 4.97  0.30 N 
18  1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9    B DG 7 ? ? 111.02 108.30 2.72  0.30 N 
19  1 N7    B DG 7 ? ? C8    B DG 7 ? ? N9    B DG 7 ? ? 116.12 113.10 3.02  0.50 N 
20  1 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1    B DT 8 ? ? 110.71 108.30 2.41  0.30 N 
21  2 N7    A DA 1 ? ? C8    A DA 1 ? ? N9    A DA 1 ? ? 118.01 113.80 4.21  0.50 N 
22  2 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1    A DC 2 ? ? 103.79 108.00 -4.21 0.70 N 
23  2 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P     A DA 3 ? ? 128.26 119.70 8.56  1.20 Y 
24  2 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1    A DC 4 ? ? 111.79 108.30 3.49  0.30 N 
25  2 N1    A DC 4 ? ? C2    A DC 4 ? ? O2    A DC 4 ? ? 122.96 118.90 4.06  0.60 N 
26  2 N7    A DG 5 ? ? C8    A DG 5 ? ? N9    A DG 5 ? ? 116.61 113.10 3.51  0.50 N 
27  2 C8    A DG 5 ? ? N9    A DG 5 ? ? C4    A DG 5 ? ? 103.67 106.40 -2.73 0.40 N 
28  2 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9    A DG 7 ? ? 110.23 108.30 1.93  0.30 N 
29  2 N7    A DG 7 ? ? C8    A DG 7 ? ? N9    A DG 7 ? ? 116.38 113.10 3.28  0.50 N 
30  2 C8    A DG 7 ? ? N9    A DG 7 ? ? C4    A DG 7 ? ? 103.97 106.40 -2.43 0.40 N 
31  2 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1    A DT 8 ? ? 111.46 108.30 3.16  0.30 N 
32  2 C5    B DA 1 ? ? N7    B DA 1 ? ? C8    B DA 1 ? ? 100.85 103.90 -3.05 0.50 N 
33  2 N7    B DA 1 ? ? C8    B DA 1 ? ? N9    B DA 1 ? ? 118.19 113.80 4.39  0.50 N 
34  2 "C5'" B DC 2 ? ? "C4'" B DC 2 ? ? "C3'" B DC 2 ? ? 122.94 115.70 7.24  1.20 N 
35  2 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1    B DC 2 ? ? 103.71 108.00 -4.29 0.70 N 
36  2 "C3'" B DC 2 ? ? "O3'" B DC 2 ? ? P     B DA 3 ? ? 129.46 119.70 9.76  1.20 Y 
37  2 "O4'" B DA 3 ? ? "C1'" B DA 3 ? ? N9    B DA 3 ? ? 112.95 108.30 4.65  0.30 N 
38  2 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1    B DC 4 ? ? 113.69 108.30 5.39  0.30 N 
39  2 N1    B DC 4 ? ? C2    B DC 4 ? ? O2    B DC 4 ? ? 122.83 118.90 3.93  0.60 N 
40  2 "O4'" B DG 5 ? ? "C1'" B DG 5 ? ? N9    B DG 5 ? ? 111.93 108.30 3.63  0.30 N 
41  2 "O4'" B DT 6 ? ? "C1'" B DT 6 ? ? N1    B DT 6 ? ? 110.92 108.30 2.62  0.30 N 
42  2 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9    B DG 7 ? ? 110.27 108.30 1.97  0.30 N 
43  2 N7    B DG 7 ? ? C8    B DG 7 ? ? N9    B DG 7 ? ? 116.34 113.10 3.24  0.50 N 
44  2 C8    B DG 7 ? ? N9    B DG 7 ? ? C4    B DG 7 ? ? 103.99 106.40 -2.41 0.40 N 
45  2 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1    B DT 8 ? ? 111.65 108.30 3.35  0.30 N 
46  3 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9    A DA 1 ? ? 112.47 108.30 4.17  0.30 N 
47  3 C5    A DA 1 ? ? N7    A DA 1 ? ? C8    A DA 1 ? ? 100.82 103.90 -3.08 0.50 N 
48  3 N7    A DA 1 ? ? C8    A DA 1 ? ? N9    A DA 1 ? ? 118.40 113.80 4.60  0.50 N 
49  3 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1    A DC 2 ? ? 103.34 108.00 -4.66 0.70 N 
50  3 N1    A DC 2 ? ? C2    A DC 2 ? ? O2    A DC 2 ? ? 123.10 118.90 4.20  0.60 N 
51  3 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.87 105.90 -5.03 0.80 N 
52  3 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9    A DA 3 ? ? 110.88 108.30 2.58  0.30 N 
53  3 N1    A DC 4 ? ? C2    A DC 4 ? ? O2    A DC 4 ? ? 122.76 118.90 3.86  0.60 N 
54  3 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P     A DG 5 ? ? 129.71 119.70 10.01 1.20 Y 
55  3 N7    A DG 5 ? ? C8    A DG 5 ? ? N9    A DG 5 ? ? 116.46 113.10 3.36  0.50 N 
56  3 C8    A DG 5 ? ? N9    A DG 5 ? ? C4    A DG 5 ? ? 103.72 106.40 -2.68 0.40 N 
57  3 C6    A DT 6 ? ? C5    A DT 6 ? ? C7    A DT 6 ? ? 119.06 122.90 -3.84 0.60 N 
58  3 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9    A DG 7 ? ? 111.02 108.30 2.72  0.30 N 
59  3 N7    A DG 7 ? ? C8    A DG 7 ? ? N9    A DG 7 ? ? 116.59 113.10 3.49  0.50 N 
60  3 C8    A DG 7 ? ? N9    A DG 7 ? ? C4    A DG 7 ? ? 103.99 106.40 -2.41 0.40 N 
61  3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1    A DT 8 ? ? 110.72 108.30 2.42  0.30 N 
62  3 "O4'" B DA 1 ? ? "C1'" B DA 1 ? ? N9    B DA 1 ? ? 112.57 108.30 4.27  0.30 N 
63  3 C5    B DA 1 ? ? N7    B DA 1 ? ? C8    B DA 1 ? ? 100.84 103.90 -3.06 0.50 N 
64  3 N7    B DA 1 ? ? C8    B DA 1 ? ? N9    B DA 1 ? ? 118.43 113.80 4.63  0.50 N 
65  3 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1    B DC 2 ? ? 103.23 108.00 -4.77 0.70 N 
66  3 N1    B DC 2 ? ? C2    B DC 2 ? ? O2    B DC 2 ? ? 123.08 118.90 4.18  0.60 N 
67  3 N1    B DC 4 ? ? C2    B DC 4 ? ? O2    B DC 4 ? ? 122.93 118.90 4.03  0.60 N 
68  3 N7    B DG 5 ? ? C8    B DG 5 ? ? N9    B DG 5 ? ? 116.26 113.10 3.16  0.50 N 
69  3 C8    B DG 5 ? ? N9    B DG 5 ? ? C4    B DG 5 ? ? 103.67 106.40 -2.73 0.40 N 
70  3 "O4'" B DT 6 ? ? "C1'" B DT 6 ? ? N1    B DT 6 ? ? 112.28 108.30 3.98  0.30 N 
71  3 C6    B DT 6 ? ? C5    B DT 6 ? ? C7    B DT 6 ? ? 118.92 122.90 -3.98 0.60 N 
72  3 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9    B DG 7 ? ? 111.05 108.30 2.75  0.30 N 
73  3 N7    B DG 7 ? ? C8    B DG 7 ? ? N9    B DG 7 ? ? 116.64 113.10 3.54  0.50 N 
74  3 C8    B DG 7 ? ? N9    B DG 7 ? ? C4    B DG 7 ? ? 103.95 106.40 -2.45 0.40 N 
75  3 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1    B DT 8 ? ? 110.52 108.30 2.22  0.30 N 
76  4 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9    A DA 1 ? ? 110.61 108.30 2.31  0.30 N 
77  4 C5    A DA 1 ? ? N7    A DA 1 ? ? C8    A DA 1 ? ? 100.80 103.90 -3.10 0.50 N 
78  4 N7    A DA 1 ? ? C8    A DA 1 ? ? N9    A DA 1 ? ? 118.24 113.80 4.44  0.50 N 
79  4 "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 122.95 115.70 7.25  1.20 N 
80  4 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1    A DC 2 ? ? 100.63 108.00 -7.37 0.70 N 
81  4 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P     A DA 3 ? ? 128.25 119.70 8.55  1.20 Y 
82  4 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9    A DA 3 ? ? 112.36 108.30 4.06  0.30 N 
83  4 N1    A DC 4 ? ? C2    A DC 4 ? ? O2    A DC 4 ? ? 122.71 118.90 3.81  0.60 N 
84  4 N7    A DG 5 ? ? C8    A DG 5 ? ? N9    A DG 5 ? ? 116.48 113.10 3.38  0.50 N 
85  4 C8    A DG 5 ? ? N9    A DG 5 ? ? C4    A DG 5 ? ? 103.63 106.40 -2.77 0.40 N 
86  4 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? "C2'" A DT 6 ? ? 100.55 105.90 -5.35 0.80 N 
87  4 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9    A DG 7 ? ? 115.58 108.30 7.28  0.30 N 
88  4 "C5'" A DT 8 ? ? "C4'" A DT 8 ? ? "O4'" A DT 8 ? ? 119.69 109.80 9.89  1.10 N 
89  4 "O4'" B DA 1 ? ? "C1'" B DA 1 ? ? N9    B DA 1 ? ? 110.78 108.30 2.48  0.30 N 
90  4 N7    B DA 1 ? ? C8    B DA 1 ? ? N9    B DA 1 ? ? 118.07 113.80 4.27  0.50 N 
91  4 "O4'" B DC 2 ? ? "C4'" B DC 2 ? ? "C3'" B DC 2 ? ? 109.79 106.00 3.79  0.60 N 
92  4 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1    B DC 2 ? ? 100.48 108.00 -7.52 0.70 N 
93  4 "O4'" B DA 3 ? ? "C1'" B DA 3 ? ? N9    B DA 3 ? ? 115.32 108.30 7.02  0.30 N 
94  4 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1    B DC 4 ? ? 112.85 108.30 4.55  0.30 N 
95  4 "O4'" B DG 5 ? ? "C1'" B DG 5 ? ? N9    B DG 5 ? ? 110.20 108.30 1.90  0.30 N 
96  4 N7    B DG 5 ? ? C8    B DG 5 ? ? N9    B DG 5 ? ? 116.40 113.10 3.30  0.50 N 
97  4 C8    B DG 5 ? ? N9    B DG 5 ? ? C4    B DG 5 ? ? 103.93 106.40 -2.47 0.40 N 
98  4 "O4'" B DT 6 ? ? "C1'" B DT 6 ? ? N1    B DT 6 ? ? 111.53 108.30 3.23  0.30 N 
99  4 C6    B DT 6 ? ? C5    B DT 6 ? ? C7    B DT 6 ? ? 118.52 122.90 -4.38 0.60 N 
100 4 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9    B DG 7 ? ? 115.44 108.30 7.14  0.30 N 
101 4 "C5'" B DT 8 ? ? "C4'" B DT 8 ? ? "O4'" B DT 8 ? ? 119.27 109.80 9.47  1.10 N 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
193D 'double helix'        
193D 'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DA 1 1_555 B DT 8 1_555 -0.006 -0.210 -0.134 -20.633 -17.637 -1.999 1 A_DA1:DT8_B A 1 ? B 8 ? 20 1 
1 A DC 2 1_555 B DG 7 1_555 0.561  -0.284 0.357  -17.459 -0.855  -1.260 2 A_DC2:DG7_B A 2 ? B 7 ? 19 1 
1 A DA 3 1_555 B DT 6 1_555 0.436  -0.145 0.197  9.576   -1.872  -2.211 3 A_DA3:DT6_B A 3 ? B 6 ? 20 1 
1 A DC 4 1_555 B DG 5 1_555 0.957  -0.358 0.495  -21.667 5.574   0.200  4 A_DC4:DG5_B A 4 ? B 5 ? 19 1 
1 A DG 5 1_555 B DC 4 1_555 -0.632 -0.317 0.355  20.252  1.744   -4.361 5 A_DG5:DC4_B A 5 ? B 4 ? 19 1 
1 A DT 6 1_555 B DA 3 1_555 -0.348 -0.221 0.256  -6.019  -0.421  0.338  6 A_DT6:DA3_B A 6 ? B 3 ? 20 1 
1 A DG 7 1_555 B DC 2 1_555 -0.474 -0.281 0.181  16.481  1.863   -1.791 7 A_DG7:DC2_B A 7 ? B 2 ? 19 1 
1 A DT 8 1_555 B DA 1 1_555 -0.025 -0.167 -0.331 26.186  -14.958 -1.220 8 A_DT8:DA1_B A 8 ? B 1 ? 20 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DA 1 1_555 B DT 8 1_555 A DC 2 1_555 B DG 7 1_555 -0.570 -0.857 3.271 -1.514 3.381  29.951 -2.327 0.791  3.182  6.511   2.915 
30.174 1 AA_DA1DC2:DG7DT8_BB A 1 ? B 8 ? A 2 ? B 7 ? 
1 A DC 2 1_555 B DG 7 1_555 A DA 3 1_555 B DT 6 1_555 -0.102 -1.133 2.364 1.121  10.435 22.172 -4.761 0.466  1.661  25.384  -2.727 
24.502 2 AA_DC2DA3:DT6DG7_BB A 2 ? B 7 ? A 3 ? B 6 ? 
1 A DA 3 1_555 B DT 6 1_555 A DC 4 1_555 B DG 5 1_555 0.664  1.223  7.172 4.711  4.317  21.964 -0.377 2.102  7.256  11.035  
-12.041 22.863 3 AA_DA3DC4:DG5DT6_BB A 3 ? B 6 ? A 4 ? B 5 ? 
1 A DC 4 1_555 B DG 5 1_555 A DG 5 1_555 B DC 4 1_555 -0.191 2.795  2.438 0.392  -2.839 1.607  60.805 4.988  -1.245 -60.162 -8.303 
3.286  4 AA_DC4DG5:DC4DG5_BB A 4 ? B 5 ? A 5 ? B 4 ? 
1 A DG 5 1_555 B DC 4 1_555 A DT 6 1_555 B DA 3 1_555 -0.847 1.216  6.967 -9.428 2.267  21.042 1.291  -5.124 6.800  5.826   24.227 
23.146 5 AA_DG5DT6:DA3DC4_BB A 5 ? B 4 ? A 6 ? B 3 ? 
1 A DT 6 1_555 B DA 3 1_555 A DG 7 1_555 B DC 2 1_555 -0.161 -1.231 2.456 0.441  7.177  22.017 -4.794 0.508  1.957  18.180  -1.116 
23.147 6 AA_DT6DG7:DC2DA3_BB A 6 ? B 3 ? A 7 ? B 2 ? 
1 A DG 7 1_555 B DC 2 1_555 A DT 8 1_555 B DA 1 1_555 0.756  -0.929 3.014 1.385  0.716  29.073 -1.993 -1.224 3.022  1.424   -2.757 
29.114 7 AA_DG7DT8:DA1DC2_BB A 7 ? B 2 ? A 8 ? B 1 ? 
# 
_pdbx_entity_nonpoly.entity_id   3 
_pdbx_entity_nonpoly.name        '3-HYDROXYQUINALDIC ACID' 
_pdbx_entity_nonpoly.comp_id     HQU 
#