data_196D # _entry.id 196D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 196D pdb_0000196d 10.2210/pdb196d/pdb RCSB BDJ060 ? ? WWPDB D_1000170213 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-02-27 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.value' 21 4 'Structure model' '_struct_conn.pdbx_dist_value' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 196D _pdbx_database_status.recvd_initial_deposition_date 1994-11-07 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Goodsell, D.S.' 1 'Grzeskowiak, K.' 2 'Dickerson, R.E.' 3 # _citation.id primary _citation.title 'Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction.' _citation.journal_abbrev Biochemistry _citation.journal_volume 34 _citation.page_first 1022 _citation.page_last 1029 _citation.year 1995 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7827018 _citation.pdbx_database_id_DOI 10.1021/bi00003a037 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Goodsell, D.S.' 1 ? primary 'Grzeskowiak, K.' 2 ? primary 'Dickerson, R.E.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*CP*TP*CP*GP*AP*GP*AP*G)-3') ; 3045.004 2 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 6 ? ? ? ? 3 water nat water 18.015 114 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DT)(DC)(DT)(DC)(DG)(DA)(DG)(DA)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CTCTCGAGAG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DC n 1 4 DT n 1 5 DC n 1 6 DG n 1 7 DA n 1 8 DG n 1 9 DA n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DT 2 12 12 DT T B . n B 1 3 DC 3 13 13 DC C B . n B 1 4 DT 4 14 14 DT T B . n B 1 5 DC 5 15 15 DC C B . n B 1 6 DG 6 16 16 DG G B . n B 1 7 DA 7 17 17 DA A B . n B 1 8 DG 8 18 18 DG G B . n B 1 9 DA 9 19 19 DA A B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA 1 21 21 CA OC7 A . D 2 CA 1 22 22 CA OC7 A . E 2 CA 1 24 24 CA OC7 A . F 2 CA 1 23 23 CA OC7 B . G 2 CA 1 25 25 CA OC7 B . H 2 CA 1 26 26 CA OC7 B . I 3 HOH 1 28 28 HOH HOH A . I 3 HOH 2 30 30 HOH HOH A . I 3 HOH 3 31 31 HOH HOH A . I 3 HOH 4 36 36 HOH HOH A . I 3 HOH 5 37 37 HOH HOH A . I 3 HOH 6 44 44 HOH HOH A . I 3 HOH 7 46 46 HOH HOH A . I 3 HOH 8 47 47 HOH HOH A . I 3 HOH 9 48 48 HOH HOH A . I 3 HOH 10 49 49 HOH HOH A . I 3 HOH 11 51 51 HOH HOH A . I 3 HOH 12 52 52 HOH HOH A . I 3 HOH 13 53 53 HOH HOH A . I 3 HOH 14 54 54 HOH HOH A . I 3 HOH 15 59 59 HOH HOH A . I 3 HOH 16 64 64 HOH HOH A . I 3 HOH 17 66 66 HOH HOH A . I 3 HOH 18 70 70 HOH HOH A . I 3 HOH 19 71 71 HOH HOH A . I 3 HOH 20 73 73 HOH HOH A . I 3 HOH 21 75 75 HOH HOH A . I 3 HOH 22 76 76 HOH HOH A . I 3 HOH 23 78 78 HOH HOH A . I 3 HOH 24 79 79 HOH HOH A . I 3 HOH 25 81 81 HOH HOH A . I 3 HOH 26 82 82 HOH HOH A . I 3 HOH 27 85 85 HOH HOH A . I 3 HOH 28 87 87 HOH HOH A . I 3 HOH 29 89 89 HOH HOH A . I 3 HOH 30 93 93 HOH HOH A . I 3 HOH 31 96 96 HOH HOH A . I 3 HOH 32 98 98 HOH HOH A . I 3 HOH 33 101 101 HOH HOH A . I 3 HOH 34 103 103 HOH HOH A . I 3 HOH 35 104 104 HOH HOH A . I 3 HOH 36 105 105 HOH HOH A . I 3 HOH 37 108 108 HOH HOH A . I 3 HOH 38 111 21 HOH OC7 A . I 3 HOH 39 112 21 HOH OC7 A . I 3 HOH 40 113 21 HOH OC7 A . I 3 HOH 41 116 22 HOH OC7 A . I 3 HOH 42 117 22 HOH OC7 A . I 3 HOH 43 118 22 HOH OC7 A . I 3 HOH 44 119 22 HOH OC7 A . I 3 HOH 45 120 22 HOH OC7 A . I 3 HOH 46 124 24 HOH OC7 A . I 3 HOH 47 126 24 HOH OC7 A . I 3 HOH 48 127 24 HOH OC7 A . I 3 HOH 49 131 25 HOH OC7 A . I 3 HOH 50 134 25 HOH OC7 A . J 3 HOH 1 27 27 HOH HOH B . J 3 HOH 2 29 29 HOH HOH B . J 3 HOH 3 32 32 HOH HOH B . J 3 HOH 4 33 33 HOH HOH B . J 3 HOH 5 34 34 HOH HOH B . J 3 HOH 6 35 35 HOH HOH B . J 3 HOH 7 38 38 HOH HOH B . J 3 HOH 8 39 39 HOH HOH B . J 3 HOH 9 40 40 HOH HOH B . J 3 HOH 10 41 41 HOH HOH B . J 3 HOH 11 42 42 HOH HOH B . J 3 HOH 12 43 43 HOH HOH B . J 3 HOH 13 45 45 HOH HOH B . J 3 HOH 14 50 50 HOH HOH B . J 3 HOH 15 55 55 HOH HOH B . J 3 HOH 16 56 56 HOH HOH B . J 3 HOH 17 57 57 HOH HOH B . J 3 HOH 18 58 58 HOH HOH B . J 3 HOH 19 60 60 HOH HOH B . J 3 HOH 20 61 61 HOH HOH B . J 3 HOH 21 62 62 HOH HOH B . J 3 HOH 22 63 63 HOH HOH B . J 3 HOH 23 65 65 HOH HOH B . J 3 HOH 24 67 67 HOH HOH B . J 3 HOH 25 68 68 HOH HOH B . J 3 HOH 26 69 69 HOH HOH B . J 3 HOH 27 72 72 HOH HOH B . J 3 HOH 28 74 74 HOH HOH B . J 3 HOH 29 77 77 HOH HOH B . J 3 HOH 30 80 80 HOH HOH B . J 3 HOH 31 83 83 HOH HOH B . J 3 HOH 32 84 84 HOH HOH B . J 3 HOH 33 86 86 HOH HOH B . J 3 HOH 34 88 88 HOH HOH B . J 3 HOH 35 90 90 HOH HOH B . J 3 HOH 36 91 91 HOH HOH B . J 3 HOH 37 92 92 HOH HOH B . J 3 HOH 38 94 94 HOH HOH B . J 3 HOH 39 95 95 HOH HOH B . J 3 HOH 40 97 97 HOH HOH B . J 3 HOH 41 99 99 HOH HOH B . J 3 HOH 42 100 100 HOH HOH B . J 3 HOH 43 102 102 HOH HOH B . J 3 HOH 44 106 106 HOH HOH B . J 3 HOH 45 107 107 HOH HOH B . J 3 HOH 46 109 21 HOH OC7 B . J 3 HOH 47 110 21 HOH OC7 B . J 3 HOH 48 114 21 HOH OC7 B . J 3 HOH 49 115 21 HOH OC7 B . J 3 HOH 50 121 23 HOH OC7 B . J 3 HOH 51 122 23 HOH OC7 B . J 3 HOH 52 123 23 HOH OC7 B . J 3 HOH 53 125 24 HOH OC7 B . J 3 HOH 54 128 24 HOH OC7 B . J 3 HOH 55 129 25 HOH OC7 B . J 3 HOH 56 130 25 HOH OC7 B . J 3 HOH 57 132 25 HOH OC7 B . J 3 HOH 58 133 25 HOH OC7 B . J 3 HOH 59 135 26 HOH OC7 B . J 3 HOH 60 136 26 HOH OC7 B . J 3 HOH 61 137 26 HOH OC7 B . J 3 HOH 62 138 26 HOH OC7 B . J 3 HOH 63 139 26 HOH OC7 B . J 3 HOH 64 140 26 HOH OC7 B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 196D _cell.length_a 62.230 _cell.length_b 24.320 _cell.length_c 40.830 _cell.angle_alpha 90.00 _cell.angle_beta 126.78 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 196D _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 196D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39.46 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 278.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, SITTING DROP, temperature 278.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'CA ACETATE' ? ? ? 1 4 2 WATER ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 93.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 196D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.700 _reflns.number_obs 4946 _reflns.number_all ? _reflns.percent_possible_obs 87.000 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 196D _refine.ls_number_reflns_obs 4946 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 1.700 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2000000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 82 _refine_hist.number_atoms_total 524 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it 3.632 6.000 ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it 4.141 6.000 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it 4.587 6.000 ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it 5.106 6.000 ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d 0.021 0.025 ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d 0.036 0.035 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d 0.037 0.025 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d 0.045 0.035 ? ? 'X-RAY DIFFRACTION' ? n_plane_restr 0.021 0.020 ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr 0.166 0.150 ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd 0.087 0.100 ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd 0.103 0.100 ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 196D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 196D _struct.title 'CRYSTAL STRUCTURE OF C-T-C-T-C-G-A-G-A-G: IMPLICATIONS FOR THE STRUCTURE OF THE HOLLIDAY JUNCTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 196D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 196D _struct_ref.pdbx_db_accession 196D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 196D A 1 ? 10 ? 196D 1 ? 10 ? 1 10 2 1 196D B 1 ? 10 ? 196D 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 5 OP2 ? ? ? 1_555 D CA . CA ? ? A DC 5 A CA 22 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc2 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 21 A HOH 111 1_555 ? ? ? ? ? ? ? 2.435 ? ? metalc3 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 21 A HOH 112 1_555 ? ? ? ? ? ? ? 2.491 ? ? metalc4 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 21 A HOH 113 1_555 ? ? ? ? ? ? ? 2.481 ? ? metalc5 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 21 B HOH 109 1_555 ? ? ? ? ? ? ? 2.511 ? ? metalc6 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 21 B HOH 110 1_555 ? ? ? ? ? ? ? 2.471 ? ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 21 B HOH 114 1_555 ? ? ? ? ? ? ? 2.488 ? ? metalc8 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 21 B HOH 115 1_555 ? ? ? ? ? ? ? 2.436 ? ? metalc9 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 22 A HOH 116 1_555 ? ? ? ? ? ? ? 2.403 ? ? metalc10 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 22 A HOH 117 1_555 ? ? ? ? ? ? ? 2.404 ? ? metalc11 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 22 A HOH 118 1_555 ? ? ? ? ? ? ? 2.550 ? ? metalc12 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 22 A HOH 119 1_555 ? ? ? ? ? ? ? 2.454 ? ? metalc13 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 22 A HOH 120 1_555 ? ? ? ? ? ? ? 2.350 ? ? metalc14 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 24 A HOH 124 1_555 ? ? ? ? ? ? ? 2.537 ? ? metalc15 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 24 A HOH 126 1_555 ? ? ? ? ? ? ? 2.519 ? ? metalc16 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 24 A HOH 127 1_555 ? ? ? ? ? ? ? 2.354 ? ? metalc17 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 24 B HOH 125 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc18 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 24 B HOH 128 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc19 metalc ? ? I HOH . O ? ? ? 1_555 G CA . CA ? ? A HOH 131 B CA 25 1_555 ? ? ? ? ? ? ? 2.479 ? ? metalc20 metalc ? ? I HOH . O ? ? ? 1_555 G CA . CA ? ? A HOH 134 B CA 25 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc21 metalc ? ? B DG 6 OP1 ? ? ? 1_555 F CA . CA ? ? B DG 16 B CA 23 1_555 ? ? ? ? ? ? ? 2.591 ? ? metalc22 metalc ? ? F CA . CA ? ? ? 1_555 J HOH . O ? ? B CA 23 B HOH 121 1_555 ? ? ? ? ? ? ? 2.344 ? ? metalc23 metalc ? ? F CA . CA ? ? ? 1_555 J HOH . O ? ? B CA 23 B HOH 122 1_555 ? ? ? ? ? ? ? 2.396 ? ? metalc24 metalc ? ? F CA . CA ? ? ? 1_555 J HOH . O ? ? B CA 23 B HOH 123 1_555 ? ? ? ? ? ? ? 2.522 ? ? metalc25 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? B CA 25 B HOH 129 1_555 ? ? ? ? ? ? ? 2.395 ? ? metalc26 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? B CA 25 B HOH 130 1_555 ? ? ? ? ? ? ? 2.515 ? ? metalc27 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? B CA 25 B HOH 132 1_555 ? ? ? ? ? ? ? 2.431 ? ? metalc28 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? B CA 25 B HOH 133 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc29 metalc ? ? H CA . CA ? ? ? 1_555 J HOH . O ? ? B CA 26 B HOH 135 1_555 ? ? ? ? ? ? ? 2.523 ? ? metalc30 metalc ? ? H CA . CA ? ? ? 1_555 J HOH . O ? ? B CA 26 B HOH 136 1_555 ? ? ? ? ? ? ? 2.404 ? ? metalc31 metalc ? ? H CA . CA ? ? ? 1_555 J HOH . O ? ? B CA 26 B HOH 137 1_555 ? ? ? ? ? ? ? 2.488 ? ? metalc32 metalc ? ? H CA . CA ? ? ? 1_555 J HOH . O ? ? B CA 26 B HOH 138 1_555 ? ? ? ? ? ? ? 2.511 ? ? metalc33 metalc ? ? H CA . CA ? ? ? 1_555 J HOH . O ? ? B CA 26 B HOH 139 1_555 ? ? ? ? ? ? ? 2.538 ? ? metalc34 metalc ? ? H CA . CA ? ? ? 1_555 J HOH . O ? ? B CA 26 B HOH 140 1_555 ? ? ? ? ? ? ? 2.431 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 2 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 2 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 3 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 3 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 3 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 8 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 8 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 8 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A DC 5 ? A DC 5 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 116 ? 1_555 84.4 ? 2 OP2 ? A DC 5 ? A DC 5 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 117 ? 1_555 97.1 ? 3 O ? I HOH . ? A HOH 116 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 117 ? 1_555 70.2 ? 4 OP2 ? A DC 5 ? A DC 5 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 118 ? 1_555 90.1 ? 5 O ? I HOH . ? A HOH 116 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 118 ? 1_555 72.2 ? 6 O ? I HOH . ? A HOH 117 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 118 ? 1_555 140.8 ? 7 OP2 ? A DC 5 ? A DC 5 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 119 ? 1_555 88.7 ? 8 O ? I HOH . ? A HOH 116 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 119 ? 1_555 144.5 ? 9 O ? I HOH . ? A HOH 117 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 119 ? 1_555 76.3 ? 10 O ? I HOH . ? A HOH 118 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 119 ? 1_555 142.7 ? 11 OP2 ? A DC 5 ? A DC 5 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 120 ? 1_555 77.2 ? 12 O ? I HOH . ? A HOH 116 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 120 ? 1_555 138.1 ? 13 O ? I HOH . ? A HOH 117 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 120 ? 1_555 148.7 ? 14 O ? I HOH . ? A HOH 118 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 120 ? 1_555 70.5 ? 15 O ? I HOH . ? A HOH 119 ? 1_555 CA ? D CA . ? A CA 22 ? 1_555 O ? I HOH . ? A HOH 120 ? 1_555 72.8 ? 16 O ? I HOH . ? A HOH 111 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? I HOH . ? A HOH 112 ? 1_555 75.3 ? 17 O ? I HOH . ? A HOH 111 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? I HOH . ? A HOH 113 ? 1_555 90.6 ? 18 O ? I HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? I HOH . ? A HOH 113 ? 1_555 83.3 ? 19 O ? I HOH . ? A HOH 111 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 109 ? 1_555 74.1 ? 20 O ? I HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 109 ? 1_555 122.7 ? 21 O ? I HOH . ? A HOH 113 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 109 ? 1_555 143.3 ? 22 O ? I HOH . ? A HOH 111 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 110 ? 1_555 136.5 ? 23 O ? I HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 110 ? 1_555 147.8 ? 24 O ? I HOH . ? A HOH 113 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 110 ? 1_555 90.4 ? 25 O ? J HOH . ? B HOH 109 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 110 ? 1_555 79.6 ? 26 O ? I HOH . ? A HOH 111 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 114 ? 1_555 148.5 ? 27 O ? I HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 114 ? 1_555 74.6 ? 28 O ? I HOH . ? A HOH 113 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 114 ? 1_555 77.0 ? 29 O ? J HOH . ? B HOH 109 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 114 ? 1_555 131.4 ? 30 O ? J HOH . ? B HOH 110 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 114 ? 1_555 73.2 ? 31 O ? I HOH . ? A HOH 111 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 115 ? 1_555 105.7 ? 32 O ? I HOH . ? A HOH 112 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 115 ? 1_555 75.2 ? 33 O ? I HOH . ? A HOH 113 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 115 ? 1_555 148.4 ? 34 O ? J HOH . ? B HOH 109 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 115 ? 1_555 68.3 ? 35 O ? J HOH . ? B HOH 110 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 115 ? 1_555 95.5 ? 36 O ? J HOH . ? B HOH 114 ? 1_555 CA ? C CA . ? A CA 21 ? 1_555 O ? J HOH . ? B HOH 115 ? 1_555 75.1 ? 37 O ? I HOH . ? A HOH 124 ? 1_555 CA ? E CA . ? A CA 24 ? 1_555 O ? I HOH . ? A HOH 126 ? 1_555 71.2 ? 38 O ? I HOH . ? A HOH 124 ? 1_555 CA ? E CA . ? A CA 24 ? 1_555 O ? I HOH . ? A HOH 127 ? 1_555 85.0 ? 39 O ? I HOH . ? A HOH 126 ? 1_555 CA ? E CA . ? A CA 24 ? 1_555 O ? I HOH . ? A HOH 127 ? 1_555 150.6 ? 40 O ? I HOH . ? A HOH 124 ? 1_555 CA ? E CA . ? A CA 24 ? 1_555 O ? J HOH . ? B HOH 125 ? 1_555 97.5 ? 41 O ? I HOH . ? A HOH 126 ? 1_555 CA ? E CA . ? A CA 24 ? 1_555 O ? J HOH . ? B HOH 125 ? 1_555 84.1 ? 42 O ? I HOH . ? A HOH 127 ? 1_555 CA ? E CA . ? A CA 24 ? 1_555 O ? J HOH . ? B HOH 125 ? 1_555 82.1 ? 43 O ? I HOH . ? A HOH 124 ? 1_555 CA ? E CA . ? A CA 24 ? 1_555 O ? J HOH . ? B HOH 128 ? 1_555 152.5 ? 44 O ? I HOH . ? A HOH 126 ? 1_555 CA ? E CA . ? A CA 24 ? 1_555 O ? J HOH . ? B HOH 128 ? 1_555 128.0 ? 45 O ? I HOH . ? A HOH 127 ? 1_555 CA ? E CA . ? A CA 24 ? 1_555 O ? J HOH . ? B HOH 128 ? 1_555 69.9 ? 46 O ? J HOH . ? B HOH 125 ? 1_555 CA ? E CA . ? A CA 24 ? 1_555 O ? J HOH . ? B HOH 128 ? 1_555 68.9 ? 47 O ? I HOH . ? A HOH 131 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? I HOH . ? A HOH 134 ? 1_555 73.3 ? 48 O ? I HOH . ? A HOH 131 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 129 ? 1_555 136.5 ? 49 O ? I HOH . ? A HOH 134 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 129 ? 1_555 98.5 ? 50 O ? I HOH . ? A HOH 131 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 130 ? 1_555 141.7 ? 51 O ? I HOH . ? A HOH 134 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 130 ? 1_555 73.6 ? 52 O ? J HOH . ? B HOH 129 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 130 ? 1_555 67.6 ? 53 O ? I HOH . ? A HOH 131 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 132 ? 1_555 132.1 ? 54 O ? I HOH . ? A HOH 134 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 132 ? 1_555 150.5 ? 55 O ? J HOH . ? B HOH 129 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 132 ? 1_555 73.3 ? 56 O ? J HOH . ? B HOH 130 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 132 ? 1_555 77.1 ? 57 O ? I HOH . ? A HOH 131 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 133 ? 1_555 66.0 ? 58 O ? I HOH . ? A HOH 134 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 133 ? 1_555 67.2 ? 59 O ? J HOH . ? B HOH 129 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 133 ? 1_555 71.4 ? 60 O ? J HOH . ? B HOH 130 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 133 ? 1_555 116.8 ? 61 O ? J HOH . ? B HOH 132 ? 1_555 CA ? G CA . ? B CA 25 ? 1_555 O ? J HOH . ? B HOH 133 ? 1_555 131.8 ? 62 OP1 ? B DG 6 ? B DG 16 ? 1_555 CA ? F CA . ? B CA 23 ? 1_555 O ? J HOH . ? B HOH 121 ? 1_555 105.7 ? 63 OP1 ? B DG 6 ? B DG 16 ? 1_555 CA ? F CA . ? B CA 23 ? 1_555 O ? J HOH . ? B HOH 122 ? 1_555 96.5 ? 64 O ? J HOH . ? B HOH 121 ? 1_555 CA ? F CA . ? B CA 23 ? 1_555 O ? J HOH . ? B HOH 122 ? 1_555 69.4 ? 65 OP1 ? B DG 6 ? B DG 16 ? 1_555 CA ? F CA . ? B CA 23 ? 1_555 O ? J HOH . ? B HOH 123 ? 1_555 93.5 ? 66 O ? J HOH . ? B HOH 121 ? 1_555 CA ? F CA . ? B CA 23 ? 1_555 O ? J HOH . ? B HOH 123 ? 1_555 142.9 ? 67 O ? J HOH . ? B HOH 122 ? 1_555 CA ? F CA . ? B CA 23 ? 1_555 O ? J HOH . ? B HOH 123 ? 1_555 77.2 ? 68 O ? J HOH . ? B HOH 135 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 136 ? 1_555 132.4 ? 69 O ? J HOH . ? B HOH 135 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 137 ? 1_555 83.5 ? 70 O ? J HOH . ? B HOH 136 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 137 ? 1_555 144.0 ? 71 O ? J HOH . ? B HOH 135 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 138 ? 1_555 130.1 ? 72 O ? J HOH . ? B HOH 136 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 138 ? 1_555 79.7 ? 73 O ? J HOH . ? B HOH 137 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 138 ? 1_555 76.4 ? 74 O ? J HOH . ? B HOH 135 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 139 ? 1_555 144.1 ? 75 O ? J HOH . ? B HOH 136 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 139 ? 1_555 74.0 ? 76 O ? J HOH . ? B HOH 137 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 139 ? 1_555 72.9 ? 77 O ? J HOH . ? B HOH 138 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 139 ? 1_555 70.3 ? 78 O ? J HOH . ? B HOH 135 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 140 ? 1_555 77.2 ? 79 O ? J HOH . ? B HOH 136 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 140 ? 1_555 84.5 ? 80 O ? J HOH . ? B HOH 137 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 140 ? 1_555 104.9 ? 81 O ? J HOH . ? B HOH 138 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 140 ? 1_555 152.0 ? 82 O ? J HOH . ? B HOH 139 ? 1_555 CA ? H CA . ? B CA 26 ? 1_555 O ? J HOH . ? B HOH 140 ? 1_555 83.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 21 ? 7 'BINDING SITE FOR RESIDUE CA A 21' AC2 Software A CA 22 ? 7 'BINDING SITE FOR RESIDUE CA A 22' AC3 Software B CA 23 ? 5 'BINDING SITE FOR RESIDUE CA B 23' AC4 Software A CA 24 ? 5 'BINDING SITE FOR RESIDUE CA A 24' AC5 Software B CA 25 ? 6 'BINDING SITE FOR RESIDUE CA B 25' AC6 Software B CA 26 ? 6 'BINDING SITE FOR RESIDUE CA B 26' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH I . ? HOH A 111 . ? 1_555 ? 2 AC1 7 HOH I . ? HOH A 112 . ? 1_555 ? 3 AC1 7 HOH I . ? HOH A 113 . ? 1_555 ? 4 AC1 7 HOH J . ? HOH B 109 . ? 1_555 ? 5 AC1 7 HOH J . ? HOH B 110 . ? 1_555 ? 6 AC1 7 HOH J . ? HOH B 114 . ? 1_555 ? 7 AC1 7 HOH J . ? HOH B 115 . ? 1_555 ? 8 AC2 7 DC A 5 ? DC A 5 . ? 1_555 ? 9 AC2 7 DG A 8 ? DG A 8 . ? 1_545 ? 10 AC2 7 HOH I . ? HOH A 116 . ? 1_555 ? 11 AC2 7 HOH I . ? HOH A 117 . ? 1_555 ? 12 AC2 7 HOH I . ? HOH A 118 . ? 1_555 ? 13 AC2 7 HOH I . ? HOH A 119 . ? 1_555 ? 14 AC2 7 HOH I . ? HOH A 120 . ? 1_555 ? 15 AC3 5 DC A 3 ? DC A 3 . ? 1_565 ? 16 AC3 5 DG B 6 ? DG B 16 . ? 1_555 ? 17 AC3 5 HOH J . ? HOH B 121 . ? 1_555 ? 18 AC3 5 HOH J . ? HOH B 122 . ? 1_555 ? 19 AC3 5 HOH J . ? HOH B 123 . ? 1_555 ? 20 AC4 5 HOH I . ? HOH A 124 . ? 1_555 ? 21 AC4 5 HOH I . ? HOH A 126 . ? 1_555 ? 22 AC4 5 HOH I . ? HOH A 127 . ? 1_555 ? 23 AC4 5 HOH J . ? HOH B 125 . ? 1_555 ? 24 AC4 5 HOH J . ? HOH B 128 . ? 1_555 ? 25 AC5 6 HOH I . ? HOH A 131 . ? 1_555 ? 26 AC5 6 HOH I . ? HOH A 134 . ? 1_555 ? 27 AC5 6 HOH J . ? HOH B 129 . ? 1_555 ? 28 AC5 6 HOH J . ? HOH B 130 . ? 1_555 ? 29 AC5 6 HOH J . ? HOH B 132 . ? 1_555 ? 30 AC5 6 HOH J . ? HOH B 133 . ? 1_555 ? 31 AC6 6 HOH J . ? HOH B 135 . ? 1_555 ? 32 AC6 6 HOH J . ? HOH B 136 . ? 1_555 ? 33 AC6 6 HOH J . ? HOH B 137 . ? 1_555 ? 34 AC6 6 HOH J . ? HOH B 138 . ? 1_555 ? 35 AC6 6 HOH J . ? HOH B 139 . ? 1_555 ? 36 AC6 6 HOH J . ? HOH B 140 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 61 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 107 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.87 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OP1 A DT 4 ? ? 1_555 O A HOH 87 ? ? 1_545 1.91 2 1 "O3'" B DG 20 ? ? 1_555 O B HOH 80 ? ? 4_545 2.03 3 1 "C3'" B DG 20 ? ? 1_555 O B HOH 80 ? ? 4_545 2.07 4 1 "C2'" B DG 20 ? ? 1_555 O B HOH 80 ? ? 4_545 2.08 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 3 ? ? P A DT 4 ? ? 1.520 1.607 -0.087 0.012 Y 2 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? 1.535 1.420 0.115 0.011 N 3 1 "O4'" A DT 4 ? ? "C4'" A DT 4 ? ? 1.367 1.446 -0.079 0.010 N 4 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.674 1.593 0.081 0.010 N 5 1 "O4'" A DA 7 ? ? "C4'" A DA 7 ? ? 1.382 1.446 -0.064 0.010 N 6 1 C5 A DA 9 ? ? N7 A DA 9 ? ? 1.425 1.388 0.037 0.006 N 7 1 "C2'" B DC 11 ? ? "C1'" B DC 11 ? ? 1.452 1.518 -0.066 0.010 N 8 1 N3 B DT 14 ? ? C4 B DT 14 ? ? 1.315 1.382 -0.067 0.008 N 9 1 "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? 1.383 1.446 -0.063 0.010 N 10 1 "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 1.440 1.509 -0.069 0.011 N 11 1 "O4'" B DG 18 ? ? "C4'" B DG 18 ? ? 1.356 1.446 -0.090 0.010 N 12 1 C6 B DA 19 ? ? N1 B DA 19 ? ? 1.397 1.351 0.046 0.007 N 13 1 C5 B DA 19 ? ? N7 B DA 19 ? ? 1.350 1.388 -0.038 0.006 N 14 1 C8 B DA 19 ? ? N9 B DA 19 ? ? 1.312 1.373 -0.061 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.49 108.30 4.19 0.30 N 2 1 "O3'" A DC 1 ? ? P A DT 2 ? ? OP2 A DT 2 ? ? 117.54 110.50 7.04 1.10 Y 3 1 C2 A DT 2 ? ? N3 A DT 2 ? ? C4 A DT 2 ? ? 122.69 127.20 -4.51 0.60 N 4 1 N3 A DT 2 ? ? C4 A DT 2 ? ? O4 A DT 2 ? ? 114.80 119.90 -5.10 0.60 N 5 1 "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 104.28 109.40 -5.12 0.80 N 6 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 123.47 119.90 3.57 0.50 N 7 1 N3 A DC 3 ? ? C4 A DC 3 ? ? C5 A DC 3 ? ? 119.33 121.90 -2.57 0.40 N 8 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.32 118.90 4.42 0.60 N 9 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DT 4 ? ? 127.16 119.70 7.46 1.20 Y 10 1 OP1 A DT 4 ? ? P A DT 4 ? ? OP2 A DT 4 ? ? 110.09 119.60 -9.51 1.50 N 11 1 "O5'" A DT 4 ? ? "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 102.69 109.40 -6.71 0.80 N 12 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 101.11 108.00 -6.89 0.70 N 13 1 N1 A DT 4 ? ? C2 A DT 4 ? ? N3 A DT 4 ? ? 119.04 114.60 4.44 0.60 N 14 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 121.66 127.20 -5.54 0.60 N 15 1 N3 A DT 4 ? ? C4 A DT 4 ? ? C5 A DT 4 ? ? 119.29 115.20 4.09 0.60 N 16 1 "C3'" A DT 4 ? ? "O3'" A DT 4 ? ? P A DC 5 ? ? 131.42 119.70 11.72 1.20 Y 17 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 101.06 105.90 -4.84 0.80 N 18 1 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 123.40 118.90 4.50 0.60 N 19 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 126.92 119.70 7.22 1.20 Y 20 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 104.05 109.40 -5.35 0.80 N 21 1 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 97.07 102.40 -5.33 0.80 N 22 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? "C2'" A DG 6 ? ? 110.09 106.80 3.29 0.50 N 23 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 121.30 125.10 -3.80 0.60 N 24 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 114.93 111.50 3.43 0.50 N 25 1 "C5'" A DA 7 ? ? "C4'" A DA 7 ? ? "O4'" A DA 7 ? ? 118.11 109.80 8.31 1.10 N 26 1 C6 A DA 7 ? ? N1 A DA 7 ? ? C2 A DA 7 ? ? 123.23 118.60 4.63 0.60 N 27 1 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 113.78 117.70 -3.92 0.50 N 28 1 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 123.10 118.60 4.50 0.60 N 29 1 "O3'" A DA 7 ? ? P A DG 8 ? ? OP2 A DG 8 ? ? 117.92 110.50 7.42 1.10 Y 30 1 "O5'" A DG 8 ? ? "C5'" A DG 8 ? ? "C4'" A DG 8 ? ? 104.26 109.40 -5.14 0.80 N 31 1 P A DG 8 ? ? "O5'" A DG 8 ? ? "C5'" A DG 8 ? ? 109.00 120.90 -11.90 1.60 N 32 1 N1 A DG 8 ? ? C2 A DG 8 ? ? N3 A DG 8 ? ? 127.55 123.90 3.65 0.60 N 33 1 C2 A DG 8 ? ? N3 A DG 8 ? ? C4 A DG 8 ? ? 108.16 111.90 -3.74 0.50 N 34 1 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.91 106.40 -2.49 0.40 N 35 1 N3 A DG 8 ? ? C2 A DG 8 ? ? N2 A DG 8 ? ? 114.29 119.90 -5.61 0.70 N 36 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 113.85 108.30 5.55 0.30 N 37 1 N1 A DA 9 ? ? C2 A DA 9 ? ? N3 A DA 9 ? ? 125.45 129.30 -3.85 0.50 N 38 1 OP1 A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 129.81 119.60 10.21 1.50 N 39 1 "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? 101.99 109.40 -7.41 0.80 N 40 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 115.01 108.30 6.71 0.30 N 41 1 C6 A DG 10 ? ? N1 A DG 10 ? ? C2 A DG 10 ? ? 121.10 125.10 -4.00 0.60 N 42 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 115.05 111.50 3.55 0.50 N 43 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? "C2'" B DC 11 ? ? 110.58 106.80 3.78 0.50 N 44 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.43 108.30 3.13 0.30 N 45 1 "O5'" B DT 12 ? ? "C5'" B DT 12 ? ? "C4'" B DT 12 ? ? 104.28 109.40 -5.12 0.80 N 46 1 C2 B DT 12 ? ? N3 B DT 12 ? ? C4 B DT 12 ? ? 122.80 127.20 -4.40 0.60 N 47 1 N3 B DT 12 ? ? C4 B DT 12 ? ? C5 B DT 12 ? ? 119.11 115.20 3.91 0.60 N 48 1 "O5'" B DC 13 ? ? "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 101.01 109.40 -8.39 0.80 N 49 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 111.97 108.30 3.67 0.30 N 50 1 C2 B DC 13 ? ? N3 B DC 13 ? ? C4 B DC 13 ? ? 123.28 119.90 3.38 0.50 N 51 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 110.12 108.30 1.82 0.30 N 52 1 N1 B DT 14 ? ? C2 B DT 14 ? ? N3 B DT 14 ? ? 118.53 114.60 3.93 0.60 N 53 1 N1 B DT 14 ? ? C2 B DT 14 ? ? O2 B DT 14 ? ? 116.16 123.10 -6.94 0.80 N 54 1 C5 B DT 14 ? ? C4 B DT 14 ? ? O4 B DT 14 ? ? 120.35 124.90 -4.55 0.70 N 55 1 "C3'" B DT 14 ? ? "O3'" B DT 14 ? ? P B DC 15 ? ? 131.46 119.70 11.76 1.20 Y 56 1 "O3'" B DT 14 ? ? P B DC 15 ? ? OP2 B DC 15 ? ? 117.45 110.50 6.95 1.10 Y 57 1 N3 B DC 15 ? ? C4 B DC 15 ? ? C5 B DC 15 ? ? 119.17 121.90 -2.73 0.40 N 58 1 "O3'" B DC 15 ? ? P B DG 16 ? ? OP2 B DG 16 ? ? 117.78 110.50 7.28 1.10 Y 59 1 "O5'" B DG 16 ? ? "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.03 109.40 -6.37 0.80 N 60 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.48 108.30 3.18 0.30 N 61 1 "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? "O4'" B DA 17 ? ? 116.86 109.80 7.06 1.10 N 62 1 C6 B DA 17 ? ? N1 B DA 17 ? ? C2 B DA 17 ? ? 123.62 118.60 5.02 0.60 N 63 1 N1 B DA 17 ? ? C2 B DA 17 ? ? N3 B DA 17 ? ? 124.58 129.30 -4.72 0.50 N 64 1 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 114.26 117.70 -3.44 0.50 N 65 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 125.18 118.60 6.58 0.60 N 66 1 "O5'" B DG 18 ? ? "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? 102.21 109.40 -7.19 0.80 N 67 1 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 113.93 108.30 5.63 0.30 N 68 1 "C3'" B DA 19 ? ? "C2'" B DA 19 ? ? "C1'" B DA 19 ? ? 97.13 102.40 -5.27 0.80 N 69 1 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? "C2'" B DA 19 ? ? 111.75 106.80 4.95 0.50 N 70 1 N1 B DA 19 ? ? C2 B DA 19 ? ? N3 B DA 19 ? ? 124.63 129.30 -4.67 0.50 N 71 1 C2 B DA 19 ? ? N3 B DA 19 ? ? C4 B DA 19 ? ? 115.20 110.60 4.60 0.50 N 72 1 "O5'" B DG 20 ? ? "C5'" B DG 20 ? ? "C4'" B DG 20 ? ? 102.73 109.40 -6.67 0.80 N 73 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 114.28 108.30 5.98 0.30 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 196D 'double helix' 196D 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.212 -0.098 0.690 -8.116 -13.625 -1.640 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DT 2 1_555 B DA 9 1_555 -0.246 -0.140 -0.059 8.902 -16.409 -2.456 2 A_DT2:DA19_B A 2 ? B 19 ? 20 1 1 A DC 3 1_555 B DG 8 1_555 0.222 -0.155 0.228 -2.039 -10.624 -5.198 3 A_DC3:DG18_B A 3 ? B 18 ? 19 1 1 A DT 4 1_555 B DA 7 1_555 -0.217 -0.127 -0.257 2.967 -16.282 1.294 4 A_DT4:DA17_B A 4 ? B 17 ? 20 1 1 A DC 5 1_555 B DG 6 1_555 0.067 0.013 0.119 2.198 -4.046 -3.365 5 A_DC5:DG16_B A 5 ? B 16 ? 19 1 1 A DG 6 1_555 B DC 5 1_555 -0.121 -0.122 -0.011 -2.648 -17.073 -5.240 6 A_DG6:DC15_B A 6 ? B 15 ? 19 1 1 A DA 7 1_555 B DT 4 1_555 0.234 -0.157 -0.202 -3.538 -6.180 -0.550 7 A_DA7:DT14_B A 7 ? B 14 ? 20 1 1 A DG 8 1_555 B DC 3 1_555 -0.331 -0.089 0.268 12.555 -14.233 -1.872 8 A_DG8:DC13_B A 8 ? B 13 ? 19 1 1 A DA 9 1_555 B DT 2 1_555 0.371 -0.086 0.234 4.549 -10.027 -2.028 9 A_DA9:DT12_B A 9 ? B 12 ? 20 1 1 A DG 10 1_555 B DC 1 1_555 -0.191 -0.100 0.298 5.803 -16.488 -1.394 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DT 2 1_555 B DA 9 1_555 -0.452 -0.339 2.890 3.541 2.507 32.388 -0.981 1.338 2.793 4.469 -6.313 32.669 1 AA_DC1DT2:DA19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DT 2 1_555 B DA 9 1_555 A DC 3 1_555 B DG 8 1_555 -0.431 -0.270 3.540 -1.529 4.459 39.706 -0.948 0.441 3.504 6.536 2.242 39.973 2 AA_DT2DC3:DG18DA19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DC 3 1_555 B DG 8 1_555 A DT 4 1_555 B DA 7 1_555 -0.176 0.229 3.154 2.425 3.550 27.753 -0.336 0.915 3.132 7.345 -5.018 28.077 3 AA_DC3DT4:DA17DG18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DT 4 1_555 B DA 7 1_555 A DC 5 1_555 B DG 6 1_555 0.990 1.467 3.414 0.106 1.871 40.267 1.906 -1.424 3.478 2.716 -0.154 40.309 4 AA_DT4DC5:DG16DA17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DC 5 1_555 B DG 6 1_555 A DG 6 1_555 B DC 5 1_555 -1.172 0.936 3.466 -3.024 0.711 33.723 1.483 1.488 3.573 1.222 5.198 33.862 5 AA_DC5DG6:DC15DG16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DG 6 1_555 B DC 5 1_555 A DA 7 1_555 B DT 4 1_555 0.206 0.442 3.260 0.942 3.795 42.123 0.224 -0.189 3.289 5.267 -1.307 42.296 6 AA_DG6DA7:DT14DC15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DA 7 1_555 B DT 4 1_555 A DG 8 1_555 B DC 3 1_555 0.179 0.197 2.993 -3.753 5.322 28.038 -0.699 -1.131 2.931 10.800 7.616 28.770 7 AA_DA7DG8:DC13DT14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DG 8 1_555 B DC 3 1_555 A DA 9 1_555 B DT 2 1_555 -0.159 -0.336 3.487 1.601 -1.732 37.960 -0.281 0.461 3.489 -2.659 -2.458 38.030 8 AA_DG8DA9:DT12DC13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DA 9 1_555 B DT 2 1_555 A DG 10 1_555 B DC 1 1_555 0.321 -0.188 3.291 -2.373 4.076 33.839 -0.965 -0.921 3.218 6.960 4.052 34.156 9 AA_DA9DG10:DC11DT12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 196D _atom_sites.fract_transf_matrix[1][1] 0.016069 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.012013 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.041118 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030579 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P # loop_