data_198D
# 
_entry.id   198D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.385 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   198D         pdb_0000198d 10.2210/pdb198d/pdb 
RCSB  DDF050       ?            ?                   
WWPDB D_1000170217 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1995-03-15 
2 'Structure model' 1 1 2008-05-22 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2024-02-07 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 4 'Structure model' 'Database references'       
5 4 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' chem_comp_atom 
2 4 'Structure model' chem_comp_bond 
3 4 'Structure model' database_2     
4 4 'Structure model' struct_site    
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_database_2.pdbx_DOI'                
2 4 'Structure model' '_database_2.pdbx_database_accession' 
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'      
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'      
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        198D 
_pdbx_database_status.recvd_initial_deposition_date   1994-11-28 
_pdbx_database_status.deposit_site                    BNL 
_pdbx_database_status.process_site                    NDB 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Dautant, A.'              1 
;Langlois D'Estaintot, B.
;
2 
'Gallois, B.'              3 
'Brown, T.'                4 
'Hunter, W.N.'             5 
# 
loop_
_citation.id 
_citation.title 
_citation.journal_abbrev 
_citation.journal_volume 
_citation.page_first 
_citation.page_last 
_citation.year 
_citation.journal_id_ASTM 
_citation.country 
_citation.journal_id_ISSN 
_citation.journal_id_CSD 
_citation.book_publisher 
_citation.pdbx_database_id_PubMed 
_citation.pdbx_database_id_DOI 
primary 'A trigonal form of the idarubicin:d(CGATCG) complex; crystal and molecular structure at 2.0 A resolution.' 
'Nucleic Acids Res.'    23 1710 1716 1995 NARHAD UK 0305-1048 0389 ? 7784175 10.1093/nar/23.10.1710 
1       
;Influence of Aglycone Modifications on the Binding of Anthracycline Drugs to DNA: The Molecular Structure of Idarubicin and 4-O-Demethyl-11-Deoxydoxorubicin Complexed to d(CGATCG)
;
'Anti-Cancer Drug Des.' 6  137  149  1991 ACDDEA UK 0266-9536 0807 ? ?       ?                      
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Dautant, A.'              1 ? 
primary 
;Langlois d'Estaintot, B.
;
2 ? 
primary 'Gallois, B.'              3 ? 
primary 'Brown, T.'                4 ? 
primary 'Hunter, W.N.'             5 ? 
1       'Gao, Y.-G.'               6 ? 
1       'Wang, A.H.-J.'            7 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
;
1809.217 4   ? ? ? ? 
2 non-polymer syn IDARUBICIN                         497.494  4   ? ? ? ? 
3 non-polymer syn SPERMINE                           202.340  1   ? ? ? ? 
4 water       nat water                              18.015   160 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DA)(DT)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGATCG 
_entity_poly.pdbx_strand_id                 A,B,C,D 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 IDARUBICIN DM5 
3 SPERMINE   SPM 
4 water      HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 DC n 
1 2 DG n 
1 3 DA n 
1 4 DT n 
1 5 DC n 
1 6 DG n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ?                        'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ?                        'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?                        'C10 H14 N5 O7 P' 347.221 
DM5 non-polymer   . IDARUBICIN                           4-DEMETHOXY-DAUNORUBICIN 'C26 H27 N O9'    497.494 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ?                        'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                ?                        'H2 O'            18.015  
SPM non-polymer   . SPERMINE                             ?                        'C10 H26 N4'      202.340 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 DC 1 1  1  DC C A . n 
A 1 2 DG 2 2  2  DG G A . n 
A 1 3 DA 3 3  3  DA A A . n 
A 1 4 DT 4 4  4  DT T A . n 
A 1 5 DC 5 5  5  DC C A . n 
A 1 6 DG 6 6  6  DG G A . n 
B 1 1 DC 1 7  7  DC C B . n 
B 1 2 DG 2 8  8  DG G B . n 
B 1 3 DA 3 9  9  DA A B . n 
B 1 4 DT 4 10 10 DT T B . n 
B 1 5 DC 5 11 11 DC C B . n 
B 1 6 DG 6 12 12 DG G B . n 
C 1 1 DC 1 13 13 DC C C . n 
C 1 2 DG 2 14 14 DG G C . n 
C 1 3 DA 3 15 15 DA A C . n 
C 1 4 DT 4 16 16 DT T C . n 
C 1 5 DC 5 17 17 DC C C . n 
C 1 6 DG 6 18 18 DG G C . n 
D 1 1 DC 1 19 19 DC C D . n 
D 1 2 DG 2 20 20 DG G D . n 
D 1 3 DA 3 21 21 DA A D . n 
D 1 4 DT 4 22 22 DT T D . n 
D 1 5 DC 5 23 23 DC C D . n 
D 1 6 DG 6 24 24 DG G D . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
E 2 DM5 1  25  25  DM5 DM5 A . 
F 3 SPM 1  29  29  SPM SPM A . 
G 2 DM5 1  26  26  DM5 DM5 B . 
H 2 DM5 1  27  27  DM5 DM5 D . 
I 2 DM5 1  28  28  DM5 DM5 D . 
J 4 HOH 1  34  34  HOH HOH A . 
J 4 HOH 2  38  38  HOH HOH A . 
J 4 HOH 3  40  40  HOH HOH A . 
J 4 HOH 4  44  44  HOH HOH A . 
J 4 HOH 5  46  46  HOH HOH A . 
J 4 HOH 6  55  55  HOH HOH A . 
J 4 HOH 7  58  58  HOH HOH A . 
J 4 HOH 8  74  74  HOH HOH A . 
J 4 HOH 9  75  75  HOH HOH A . 
J 4 HOH 10 77  77  HOH HOH A . 
J 4 HOH 11 78  78  HOH HOH A . 
J 4 HOH 12 79  79  HOH HOH A . 
J 4 HOH 13 80  80  HOH HOH A . 
J 4 HOH 14 92  92  HOH HOH A . 
J 4 HOH 15 95  95  HOH HOH A . 
J 4 HOH 16 96  96  HOH HOH A . 
J 4 HOH 17 97  97  HOH HOH A . 
J 4 HOH 18 99  99  HOH HOH A . 
J 4 HOH 19 100 100 HOH HOH A . 
J 4 HOH 20 101 101 HOH HOH A . 
J 4 HOH 21 103 103 HOH HOH A . 
J 4 HOH 22 104 104 HOH HOH A . 
J 4 HOH 23 106 106 HOH HOH A . 
J 4 HOH 24 109 109 HOH HOH A . 
J 4 HOH 25 114 114 HOH HOH A . 
J 4 HOH 26 115 115 HOH HOH A . 
J 4 HOH 27 119 119 HOH HOH A . 
J 4 HOH 28 121 121 HOH HOH A . 
J 4 HOH 29 122 122 HOH HOH A . 
J 4 HOH 30 125 125 HOH HOH A . 
J 4 HOH 31 126 126 HOH HOH A . 
J 4 HOH 32 127 127 HOH HOH A . 
J 4 HOH 33 138 138 HOH HOH A . 
J 4 HOH 34 141 141 HOH HOH A . 
J 4 HOH 35 143 143 HOH HOH A . 
J 4 HOH 36 146 146 HOH HOH A . 
J 4 HOH 37 147 147 HOH HOH A . 
J 4 HOH 38 148 148 HOH HOH A . 
J 4 HOH 39 159 159 HOH HOH A . 
J 4 HOH 40 160 160 HOH HOH A . 
J 4 HOH 41 164 164 HOH HOH A . 
J 4 HOH 42 165 165 HOH HOH A . 
J 4 HOH 43 172 172 HOH HOH A . 
J 4 HOH 44 175 175 HOH HOH A . 
J 4 HOH 45 177 177 HOH HOH A . 
J 4 HOH 46 180 180 HOH HOH A . 
J 4 HOH 47 187 187 HOH HOH A . 
K 4 HOH 1  41  41  HOH HOH B . 
K 4 HOH 2  42  42  HOH HOH B . 
K 4 HOH 3  43  43  HOH HOH B . 
K 4 HOH 4  56  56  HOH HOH B . 
K 4 HOH 5  57  57  HOH HOH B . 
K 4 HOH 6  60  60  HOH HOH B . 
K 4 HOH 7  61  61  HOH HOH B . 
K 4 HOH 8  76  76  HOH HOH B . 
K 4 HOH 9  82  82  HOH HOH B . 
K 4 HOH 10 83  83  HOH HOH B . 
K 4 HOH 11 84  84  HOH HOH B . 
K 4 HOH 12 88  88  HOH HOH B . 
K 4 HOH 13 89  89  HOH HOH B . 
K 4 HOH 14 90  90  HOH HOH B . 
K 4 HOH 15 91  91  HOH HOH B . 
K 4 HOH 16 94  94  HOH HOH B . 
K 4 HOH 17 98  98  HOH HOH B . 
K 4 HOH 18 102 102 HOH HOH B . 
K 4 HOH 19 107 107 HOH HOH B . 
K 4 HOH 20 108 108 HOH HOH B . 
K 4 HOH 21 116 116 HOH HOH B . 
K 4 HOH 22 120 120 HOH HOH B . 
K 4 HOH 23 123 123 HOH HOH B . 
K 4 HOH 24 124 124 HOH HOH B . 
K 4 HOH 25 128 128 HOH HOH B . 
K 4 HOH 26 136 136 HOH HOH B . 
K 4 HOH 27 139 139 HOH HOH B . 
K 4 HOH 28 140 140 HOH HOH B . 
K 4 HOH 29 142 142 HOH HOH B . 
K 4 HOH 30 152 152 HOH HOH B . 
K 4 HOH 31 161 161 HOH HOH B . 
K 4 HOH 32 163 163 HOH HOH B . 
K 4 HOH 33 167 167 HOH HOH B . 
K 4 HOH 34 170 170 HOH HOH B . 
K 4 HOH 35 178 178 HOH HOH B . 
K 4 HOH 36 184 184 HOH HOH B . 
K 4 HOH 37 185 185 HOH HOH B . 
K 4 HOH 38 186 186 HOH HOH B . 
L 4 HOH 1  30  30  HOH HOH C . 
L 4 HOH 2  37  37  HOH HOH C . 
L 4 HOH 3  39  39  HOH HOH C . 
L 4 HOH 4  47  47  HOH HOH C . 
L 4 HOH 5  48  48  HOH HOH C . 
L 4 HOH 6  49  49  HOH HOH C . 
L 4 HOH 7  50  50  HOH HOH C . 
L 4 HOH 8  54  54  HOH HOH C . 
L 4 HOH 9  64  64  HOH HOH C . 
L 4 HOH 10 65  65  HOH HOH C . 
L 4 HOH 11 66  66  HOH HOH C . 
L 4 HOH 12 67  67  HOH HOH C . 
L 4 HOH 13 68  68  HOH HOH C . 
L 4 HOH 14 110 110 HOH HOH C . 
L 4 HOH 15 112 112 HOH HOH C . 
L 4 HOH 16 117 117 HOH HOH C . 
L 4 HOH 17 118 118 HOH HOH C . 
L 4 HOH 18 130 130 HOH HOH C . 
L 4 HOH 19 131 131 HOH HOH C . 
L 4 HOH 20 132 132 HOH HOH C . 
L 4 HOH 21 133 133 HOH HOH C . 
L 4 HOH 22 135 135 HOH HOH C . 
L 4 HOH 23 145 145 HOH HOH C . 
L 4 HOH 24 154 154 HOH HOH C . 
L 4 HOH 25 155 155 HOH HOH C . 
L 4 HOH 26 156 156 HOH HOH C . 
L 4 HOH 27 157 157 HOH HOH C . 
L 4 HOH 28 166 166 HOH HOH C . 
L 4 HOH 29 168 168 HOH HOH C . 
L 4 HOH 30 169 169 HOH HOH C . 
L 4 HOH 31 171 171 HOH HOH C . 
L 4 HOH 32 174 174 HOH HOH C . 
L 4 HOH 33 181 181 HOH HOH C . 
L 4 HOH 34 182 182 HOH HOH C . 
L 4 HOH 35 183 183 HOH HOH C . 
L 4 HOH 36 188 188 HOH HOH C . 
L 4 HOH 37 189 189 HOH HOH C . 
M 4 HOH 1  31  31  HOH HOH D . 
M 4 HOH 2  32  32  HOH HOH D . 
M 4 HOH 3  33  33  HOH HOH D . 
M 4 HOH 4  35  35  HOH HOH D . 
M 4 HOH 5  36  36  HOH HOH D . 
M 4 HOH 6  45  45  HOH HOH D . 
M 4 HOH 7  51  51  HOH HOH D . 
M 4 HOH 8  52  52  HOH HOH D . 
M 4 HOH 9  53  53  HOH HOH D . 
M 4 HOH 10 59  59  HOH HOH D . 
M 4 HOH 11 62  62  HOH HOH D . 
M 4 HOH 12 63  63  HOH HOH D . 
M 4 HOH 13 69  69  HOH HOH D . 
M 4 HOH 14 70  70  HOH HOH D . 
M 4 HOH 15 71  71  HOH HOH D . 
M 4 HOH 16 72  72  HOH HOH D . 
M 4 HOH 17 73  73  HOH HOH D . 
M 4 HOH 18 81  81  HOH HOH D . 
M 4 HOH 19 85  85  HOH HOH D . 
M 4 HOH 20 86  86  HOH HOH D . 
M 4 HOH 21 87  87  HOH HOH D . 
M 4 HOH 22 93  93  HOH HOH D . 
M 4 HOH 23 105 105 HOH HOH D . 
M 4 HOH 24 111 111 HOH HOH D . 
M 4 HOH 25 113 113 HOH HOH D . 
M 4 HOH 26 129 129 HOH HOH D . 
M 4 HOH 27 134 134 HOH HOH D . 
M 4 HOH 28 137 137 HOH HOH D . 
M 4 HOH 29 144 144 HOH HOH D . 
M 4 HOH 30 149 149 HOH HOH D . 
M 4 HOH 31 150 150 HOH HOH D . 
M 4 HOH 32 151 151 HOH HOH D . 
M 4 HOH 33 153 153 HOH HOH D . 
M 4 HOH 34 158 158 HOH HOH D . 
M 4 HOH 35 162 162 HOH HOH D . 
M 4 HOH 36 173 173 HOH HOH D . 
M 4 HOH 37 176 176 HOH HOH D . 
M 4 HOH 38 179 179 HOH HOH D . 
# 
_software.name             NUCLSQ 
_software.classification   refinement 
_software.version          . 
_software.citation_id      ? 
_software.pdbx_ordinal     1 
# 
_cell.entry_id           198D 
_cell.length_a           52.996 
_cell.length_b           52.996 
_cell.length_c           33.065 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        120.00 
_cell.Z_PDB              12 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         198D 
_symmetry.space_group_name_H-M             'P 31' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                144 
# 
_exptl.entry_id          198D 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      3.70 
_exptl_crystal.density_percent_sol   66.80 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.temp            277.00 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.50 
_exptl_crystal_grow.pdbx_details    'pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 WATER           ? ? ? 
1 2 1 MPD             ? ? ? 
1 3 1 MGCL2           ? ? ? 
1 4 1 'NA CACODYLATE' ? ? ? 
1 5 1 SPERMINE_HCL    ? ? ? 
1 6 2 WATER           ? ? ? 
1 7 2 MPD             ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           298.00 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               DIFFRACTOMETER 
_diffrn_detector.type                   'RIGAKU AFC-5' 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   ? 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        'RIGAKU RU200' 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     198D 
_reflns.observed_criterion_sigma_I   ? 
_reflns.observed_criterion_sigma_F   2.000 
_reflns.d_resolution_low             ? 
_reflns.d_resolution_high            2.000 
_reflns.number_obs                   ? 
_reflns.number_all                   7276 
_reflns.percent_possible_obs         ? 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_refine.entry_id                                 198D 
_refine.ls_number_reflns_obs                     3768 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             18.000 
_refine.ls_d_res_high                            1.970 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          0.1880000 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   480 
_refine_hist.pdbx_number_atoms_ligand         158 
_refine_hist.number_atoms_solvent             160 
_refine_hist.number_atoms_total               798 
_refine_hist.d_res_high                       1.970 
_refine_hist.d_res_low                        18.000 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
n_bond_d               ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_angle_d              ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_planar_d             ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_hb_or_metal_coord    ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_sugar_bond_it        ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_sugar_angle_it       ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_phos_bond_it         ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_phos_angle_it        ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_bond_angle_restr     ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_dihedral_angle_restr ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_impr_tor             ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_sugar_bond_d         0.025 0.025 ? ? 'X-RAY DIFFRACTION' ? 
n_sugar_bond_angle_d   0.040 0.040 ? ? 'X-RAY DIFFRACTION' ? 
n_phos_bond_d          0.068 0.035 ? ? 'X-RAY DIFFRACTION' ? 
n_phos_bond_angle_d    0.037 0.045 ? ? 'X-RAY DIFFRACTION' ? 
n_plane_restr          ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_chiral_restr         ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_singtor_nbd          ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_multtor_nbd          ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_xhyhbond_nbd         ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
# 
_database_PDB_matrix.entry_id          198D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  198D 
_struct.title                     
'A TRIGONAL FORM OF THE IDARUBICIN-D(CGATCG) COMPLEX: CRYSTAL AND MOLECULAR STRUCTURE AT 2.0 ANGSTROMS RESOLUTION' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        198D 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 1 ? 
D N N 1 ? 
E N N 2 ? 
F N N 3 ? 
G N N 2 ? 
H N N 2 ? 
I N N 2 ? 
J N N 4 ? 
K N N 4 ? 
L N N 4 ? 
M N N 4 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    198D 
_struct_ref.pdbx_db_accession          198D 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 198D A 1 ? 6 ? 198D 1  ? 6  ? 1  6  
2 1 198D B 1 ? 6 ? 198D 7  ? 12 ? 7  12 
3 1 198D C 1 ? 6 ? 198D 13 ? 18 ? 13 18 
4 1 198D D 1 ? 6 ? 198D 19 ? 24 ? 19 24 
# 
loop_
_pdbx_struct_assembly.id 
_pdbx_struct_assembly.details 
_pdbx_struct_assembly.method_details 
_pdbx_struct_assembly.oligomeric_details 
_pdbx_struct_assembly.oligomeric_count 
1 author_defined_assembly ? dimeric 2 
2 author_defined_assembly ? dimeric 2 
# 
loop_
_pdbx_struct_assembly_gen.assembly_id 
_pdbx_struct_assembly_gen.oper_expression 
_pdbx_struct_assembly_gen.asym_id_list 
1 1 A,B,E,F,G,J,K 
2 1 C,D,H,I,L,M   
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_struct_biol.id 
1 
2 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1  B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1  B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1  B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2  B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2  B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2  B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 3  B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 3  B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 4  B DA 9  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 4  B DA 9  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5  B DG 8  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5  B DG 8  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5  B DG 8  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6  B DC 7  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6  B DC 7  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6  B DC 7  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog17 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 13 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog18 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 13 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog19 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 13 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog20 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 14 D DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog21 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 14 D DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog22 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 14 D DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog23 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 4 N3 ? ? C DA 15 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog24 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 15 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog25 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 16 D DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog26 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 16 D DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog27 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 17 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog28 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 17 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog29 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 17 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog30 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 18 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog31 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 18 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog32 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 18 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A DM5 25 ? 12 'BINDING SITE FOR RESIDUE DM5 A 25' 
AC2 Software B DM5 26 ? 8  'BINDING SITE FOR RESIDUE DM5 B 26' 
AC3 Software D DM5 27 ? 10 'BINDING SITE FOR RESIDUE DM5 D 27' 
AC4 Software D DM5 28 ? 7  'BINDING SITE FOR RESIDUE DM5 D 28' 
AC5 Software A SPM 29 ? 9  'BINDING SITE FOR RESIDUE SPM A 29' 
1   ?        ? ?   ?  ? ?  ?                                   
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 12 DC  A 1 ? DC  A 1   . ? 3_664 ? 
2  AC1 12 DT  A 4 ? DT  A 4   . ? 1_555 ? 
3  AC1 12 DC  A 5 ? DC  A 5   . ? 1_555 ? 
4  AC1 12 DG  A 6 ? DG  A 6   . ? 1_555 ? 
5  AC1 12 HOH J . ? HOH A 44  . ? 1_555 ? 
6  AC1 12 DC  B 1 ? DC  B 7   . ? 1_555 ? 
7  AC1 12 DG  B 2 ? DG  B 8   . ? 1_555 ? 
8  AC1 12 DA  B 3 ? DA  B 9   . ? 1_555 ? 
9  AC1 12 DG  B 6 ? DG  B 12  . ? 3_664 ? 
10 AC1 12 HOH K . ? HOH B 98  . ? 1_555 ? 
11 AC1 12 DG  C 6 ? DG  C 18  . ? 3_664 ? 
12 AC1 12 HOH L . ? HOH C 47  . ? 3_664 ? 
13 AC2 8  DC  A 1 ? DC  A 1   . ? 1_555 ? 
14 AC2 8  DG  A 2 ? DG  A 2   . ? 1_555 ? 
15 AC2 8  DA  A 3 ? DA  A 3   . ? 1_555 ? 
16 AC2 8  HOH J . ? HOH A 95  . ? 2_655 ? 
17 AC2 8  DG  B 2 ? DG  B 8   . ? 2_655 ? 
18 AC2 8  DT  B 4 ? DT  B 10  . ? 1_555 ? 
19 AC2 8  DC  B 5 ? DC  B 11  . ? 1_555 ? 
20 AC2 8  DG  B 6 ? DG  B 12  . ? 1_555 ? 
21 AC3 10 DG  A 6 ? DG  A 6   . ? 2_655 ? 
22 AC3 10 DT  C 4 ? DT  C 16  . ? 1_555 ? 
23 AC3 10 DC  C 5 ? DC  C 17  . ? 1_555 ? 
24 AC3 10 DG  C 6 ? DG  C 18  . ? 1_555 ? 
25 AC3 10 DC  D 1 ? DC  D 19  . ? 1_555 ? 
26 AC3 10 DG  D 2 ? DG  D 20  . ? 1_555 ? 
27 AC3 10 DA  D 3 ? DA  D 21  . ? 1_555 ? 
28 AC3 10 DG  D 6 ? DG  D 24  . ? 2_665 ? 
29 AC3 10 HOH M . ? HOH D 33  . ? 1_555 ? 
30 AC3 10 HOH M . ? HOH D 81  . ? 1_555 ? 
31 AC4 7  DC  C 1 ? DC  C 13  . ? 1_555 ? 
32 AC4 7  DG  C 2 ? DG  C 14  . ? 1_555 ? 
33 AC4 7  HOH L . ? HOH C 154 . ? 1_555 ? 
34 AC4 7  DG  D 2 ? DG  D 20  . ? 3_564 ? 
35 AC4 7  DC  D 5 ? DC  D 23  . ? 1_555 ? 
36 AC4 7  DG  D 6 ? DG  D 24  . ? 1_555 ? 
37 AC4 7  HOH M . ? HOH D 33  . ? 3_564 ? 
38 AC5 9  DC  A 1 ? DC  A 1   . ? 3_664 ? 
39 AC5 9  DA  A 3 ? DA  A 3   . ? 1_555 ? 
40 AC5 9  DT  A 4 ? DT  A 4   . ? 1_555 ? 
41 AC5 9  DC  A 5 ? DC  A 5   . ? 1_555 ? 
42 AC5 9  DG  A 6 ? DG  A 6   . ? 1_555 ? 
43 AC5 9  HOH J . ? HOH A 95  . ? 1_555 ? 
44 AC5 9  DC  C 5 ? DC  C 17  . ? 3_664 ? 
45 AC5 9  DG  C 6 ? DG  C 18  . ? 3_664 ? 
46 AC5 9  HOH M . ? HOH D 81  . ? 3_664 ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1 C6    A DG 2  ? ? N1    A DG 2  ? ? 1.341 1.391 -0.050 0.007 N 
2  1 C5    A DT 4  ? ? C6    A DT 4  ? ? 1.383 1.339 0.044  0.007 N 
3  1 "C5'" A DC 5  ? ? "C4'" A DC 5  ? ? 1.558 1.512 0.046  0.007 N 
4  1 "C5'" A DG 6  ? ? "C4'" A DG 6  ? ? 1.588 1.512 0.076  0.007 N 
5  1 N1    A DG 6  ? ? C2    A DG 6  ? ? 1.318 1.373 -0.055 0.008 N 
6  1 C2    B DG 8  ? ? N3    B DG 8  ? ? 1.272 1.323 -0.051 0.008 N 
7  1 "O4'" B DT 10 ? ? "C1'" B DT 10 ? ? 1.488 1.420 0.068  0.011 N 
8  1 C2    C DT 16 ? ? O2    C DT 16 ? ? 1.275 1.220 0.055  0.008 N 
9  1 C4    C DT 16 ? ? O4    C DT 16 ? ? 1.288 1.228 0.060  0.009 N 
10 1 "O4'" C DC 17 ? ? "C4'" C DC 17 ? ? 1.385 1.446 -0.061 0.010 N 
11 1 C5    C DG 18 ? ? N7    C DG 18 ? ? 1.427 1.388 0.039  0.006 N 
12 1 N3    D DA 21 ? ? C4    D DA 21 ? ? 1.382 1.344 0.038  0.006 N 
13 1 "C5'" D DT 22 ? ? "C4'" D DT 22 ? ? 1.559 1.512 0.047  0.007 N 
14 1 "O4'" D DC 23 ? ? "C1'" D DC 23 ? ? 1.494 1.420 0.074  0.011 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? "C2'" A DC 1  ? ? 110.12 106.80 3.32  0.50 N 
2  1 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 111.17 108.30 2.87  0.30 N 
3  1 "O4'" A DG 2  ? ? "C1'" A DG 2  ? ? N9    A DG 2  ? ? 115.31 108.30 7.01  0.30 N 
4  1 C6    A DA 3  ? ? N1    A DA 3  ? ? C2    A DA 3  ? ? 122.54 118.60 3.94  0.60 N 
5  1 N1    A DA 3  ? ? C2    A DA 3  ? ? N3    A DA 3  ? ? 125.06 129.30 -4.24 0.50 N 
6  1 "C3'" A DA 3  ? ? "O3'" A DA 3  ? ? P     A DT 4  ? ? 129.41 119.70 9.71  1.20 Y 
7  1 "C3'" A DT 4  ? ? "O3'" A DT 4  ? ? P     A DC 5  ? ? 129.29 119.70 9.59  1.20 Y 
8  1 "O5'" A DC 5  ? ? "C5'" A DC 5  ? ? "C4'" A DC 5  ? ? 104.45 109.40 -4.95 0.80 N 
9  1 "O4'" A DC 5  ? ? "C1'" A DC 5  ? ? N1    A DC 5  ? ? 117.33 108.30 9.03  0.30 N 
10 1 "O4'" B DC 7  ? ? "C1'" B DC 7  ? ? N1    B DC 7  ? ? 112.83 108.30 4.53  0.30 N 
11 1 "O4'" B DG 8  ? ? "C1'" B DG 8  ? ? N9    B DG 8  ? ? 112.42 108.30 4.12  0.30 N 
12 1 C4    B DG 8  ? ? C5    B DG 8  ? ? N7    B DG 8  ? ? 107.67 110.80 -3.13 0.40 N 
13 1 C8    B DG 8  ? ? N9    B DG 8  ? ? C4    B DG 8  ? ? 102.89 106.40 -3.51 0.40 N 
14 1 N9    B DG 8  ? ? C4    B DG 8  ? ? C5    B DG 8  ? ? 109.46 105.40 4.06  0.40 N 
15 1 N3    B DG 8  ? ? C2    B DG 8  ? ? N2    B DG 8  ? ? 115.58 119.90 -4.32 0.70 N 
16 1 N1    B DG 8  ? ? C6    B DG 8  ? ? O6    B DG 8  ? ? 115.86 119.90 -4.04 0.60 N 
17 1 C5    B DG 8  ? ? C6    B DG 8  ? ? O6    B DG 8  ? ? 132.34 128.60 3.74  0.60 N 
18 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1    B DC 11 ? ? 114.91 108.30 6.61  0.30 N 
19 1 N3    B DC 11 ? ? C4    B DC 11 ? ? C5    B DC 11 ? ? 119.07 121.90 -2.83 0.40 N 
20 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9    B DG 12 ? ? 118.58 108.30 10.28 0.30 N 
21 1 "O4'" C DC 13 ? ? "C4'" C DC 13 ? ? "C3'" C DC 13 ? ? 110.55 106.00 4.55  0.60 N 
22 1 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? "C2'" C DG 14 ? ? 100.92 105.90 -4.98 0.80 N 
23 1 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? N9    C DG 14 ? ? 117.83 108.30 9.53  0.30 N 
24 1 C6    C DG 14 ? ? N1    C DG 14 ? ? C2    C DG 14 ? ? 121.21 125.10 -3.89 0.60 N 
25 1 N1    C DG 14 ? ? C2    C DG 14 ? ? N3    C DG 14 ? ? 128.22 123.90 4.32  0.60 N 
26 1 C4    C DG 14 ? ? C5    C DG 14 ? ? N7    C DG 14 ? ? 107.95 110.80 -2.85 0.40 N 
27 1 C8    C DG 14 ? ? N9    C DG 14 ? ? C4    C DG 14 ? ? 103.51 106.40 -2.89 0.40 N 
28 1 N9    C DG 14 ? ? C4    C DG 14 ? ? C5    C DG 14 ? ? 109.61 105.40 4.21  0.40 N 
29 1 "O4'" C DA 15 ? ? "C1'" C DA 15 ? ? N9    C DA 15 ? ? 110.53 108.30 2.23  0.30 N 
30 1 C6    C DA 15 ? ? N1    C DA 15 ? ? C2    C DA 15 ? ? 123.75 118.60 5.15  0.60 N 
31 1 N1    C DA 15 ? ? C2    C DA 15 ? ? N3    C DA 15 ? ? 124.40 129.30 -4.90 0.50 N 
32 1 C5    C DA 15 ? ? C6    C DA 15 ? ? N1    C DA 15 ? ? 114.22 117.70 -3.48 0.50 N 
33 1 N1    C DA 15 ? ? C6    C DA 15 ? ? N6    C DA 15 ? ? 123.74 118.60 5.14  0.60 N 
34 1 "C3'" C DA 15 ? ? "O3'" C DA 15 ? ? P     C DT 16 ? ? 130.46 119.70 10.76 1.20 Y 
35 1 "C1'" C DT 16 ? ? "O4'" C DT 16 ? ? "C4'" C DT 16 ? ? 115.19 110.30 4.89  0.70 N 
36 1 "O4'" C DT 16 ? ? "C1'" C DT 16 ? ? N1    C DT 16 ? ? 111.63 108.30 3.33  0.30 N 
37 1 N1    C DT 16 ? ? C2    C DT 16 ? ? N3    C DT 16 ? ? 118.63 114.60 4.03  0.60 N 
38 1 C2    C DT 16 ? ? N3    C DT 16 ? ? C4    C DT 16 ? ? 122.06 127.20 -5.14 0.60 N 
39 1 N3    C DT 16 ? ? C4    C DT 16 ? ? C5    C DT 16 ? ? 119.86 115.20 4.66  0.60 N 
40 1 C4    C DT 16 ? ? C5    C DT 16 ? ? C7    C DT 16 ? ? 123.05 119.00 4.05  0.60 N 
41 1 C6    C DT 16 ? ? C5    C DT 16 ? ? C7    C DT 16 ? ? 118.91 122.90 -3.99 0.60 N 
42 1 "C3'" C DT 16 ? ? "O3'" C DT 16 ? ? P     C DC 17 ? ? 128.90 119.70 9.20  1.20 Y 
43 1 "O4'" C DC 17 ? ? "C1'" C DC 17 ? ? N1    C DC 17 ? ? 125.21 108.30 16.91 0.30 N 
44 1 C2    C DC 17 ? ? N3    C DC 17 ? ? C4    C DC 17 ? ? 124.39 119.90 4.49  0.50 N 
45 1 N3    C DC 17 ? ? C4    C DC 17 ? ? C5    C DC 17 ? ? 118.45 121.90 -3.45 0.40 N 
46 1 N1    C DC 17 ? ? C2    C DC 17 ? ? O2    C DC 17 ? ? 124.24 118.90 5.34  0.60 N 
47 1 "C1'" C DG 18 ? ? "O4'" C DG 18 ? ? "C4'" C DG 18 ? ? 115.01 110.30 4.71  0.70 N 
48 1 N3    C DG 18 ? ? C4    C DG 18 ? ? C5    C DG 18 ? ? 125.58 128.60 -3.02 0.50 N 
49 1 N9    C DG 18 ? ? C4    C DG 18 ? ? C5    C DG 18 ? ? 108.60 105.40 3.20  0.40 N 
50 1 "O4'" D DC 19 ? ? "C1'" D DC 19 ? ? N1    D DC 19 ? ? 114.17 108.30 5.87  0.30 N 
51 1 C2    D DC 19 ? ? N3    D DC 19 ? ? C4    D DC 19 ? ? 124.06 119.90 4.16  0.50 N 
52 1 N3    D DC 19 ? ? C4    D DC 19 ? ? C5    D DC 19 ? ? 118.48 121.90 -3.42 0.40 N 
53 1 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9    D DG 20 ? ? 112.88 108.30 4.58  0.30 N 
54 1 "O4'" D DA 21 ? ? "C1'" D DA 21 ? ? N9    D DA 21 ? ? 113.41 108.30 5.11  0.30 N 
55 1 C6    D DA 21 ? ? N1    D DA 21 ? ? C2    D DA 21 ? ? 123.15 118.60 4.55  0.60 N 
56 1 C5    D DA 21 ? ? C6    D DA 21 ? ? N1    D DA 21 ? ? 113.40 117.70 -4.30 0.50 N 
57 1 N9    D DA 21 ? ? C4    D DA 21 ? ? C5    D DA 21 ? ? 109.11 105.80 3.31  0.40 N 
58 1 N3    D DT 22 ? ? C2    D DT 22 ? ? O2    D DT 22 ? ? 118.04 122.30 -4.26 0.60 N 
59 1 N3    D DT 22 ? ? C4    D DT 22 ? ? O4    D DT 22 ? ? 115.23 119.90 -4.67 0.60 N 
60 1 "O4'" D DC 23 ? ? "C4'" D DC 23 ? ? "C3'" D DC 23 ? ? 112.16 106.00 6.16  0.60 N 
61 1 "O4'" D DC 23 ? ? "C1'" D DC 23 ? ? N1    D DC 23 ? ? 116.72 108.30 8.42  0.30 N 
62 1 "C3'" D DC 23 ? ? "O3'" D DC 23 ? ? P     D DG 24 ? ? 127.50 119.70 7.80  1.20 Y 
63 1 "O4'" D DG 24 ? ? "C4'" D DG 24 ? ? "C3'" D DG 24 ? ? 100.99 104.50 -3.51 0.40 N 
# 
_pdbx_validate_planes.id              1 
_pdbx_validate_planes.PDB_model_num   1 
_pdbx_validate_planes.auth_comp_id    DC 
_pdbx_validate_planes.auth_asym_id    C 
_pdbx_validate_planes.auth_seq_id     17 
_pdbx_validate_planes.PDB_ins_code    ? 
_pdbx_validate_planes.label_alt_id    ? 
_pdbx_validate_planes.rmsd            0.069 
_pdbx_validate_planes.type            'SIDE CHAIN' 
# 
_struct_site_keywords.site_id   1 
_struct_site_keywords.text      INTERCALATION 
# 
loop_
_refine_B_iso.class 
_refine_B_iso.details 
_refine_B_iso.treatment 
_refine_B_iso.pdbx_refine_id 
'ALL ATOMS'  TR isotropic 'X-RAY DIFFRACTION' 
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' 
# 
loop_
_refine_occupancy.class 
_refine_occupancy.treatment 
_refine_occupancy.pdbx_refine_id 
'ALL ATOMS'  fix 'X-RAY DIFFRACTION' 
'ALL WATERS' fix 'X-RAY DIFFRACTION' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA  OP3    O N N 1   
DA  P      P N N 2   
DA  OP1    O N N 3   
DA  OP2    O N N 4   
DA  "O5'"  O N N 5   
DA  "C5'"  C N N 6   
DA  "C4'"  C N R 7   
DA  "O4'"  O N N 8   
DA  "C3'"  C N S 9   
DA  "O3'"  O N N 10  
DA  "C2'"  C N N 11  
DA  "C1'"  C N R 12  
DA  N9     N Y N 13  
DA  C8     C Y N 14  
DA  N7     N Y N 15  
DA  C5     C Y N 16  
DA  C6     C Y N 17  
DA  N6     N N N 18  
DA  N1     N Y N 19  
DA  C2     C Y N 20  
DA  N3     N Y N 21  
DA  C4     C Y N 22  
DA  HOP3   H N N 23  
DA  HOP2   H N N 24  
DA  "H5'"  H N N 25  
DA  "H5''" H N N 26  
DA  "H4'"  H N N 27  
DA  "H3'"  H N N 28  
DA  "HO3'" H N N 29  
DA  "H2'"  H N N 30  
DA  "H2''" H N N 31  
DA  "H1'"  H N N 32  
DA  H8     H N N 33  
DA  H61    H N N 34  
DA  H62    H N N 35  
DA  H2     H N N 36  
DC  OP3    O N N 37  
DC  P      P N N 38  
DC  OP1    O N N 39  
DC  OP2    O N N 40  
DC  "O5'"  O N N 41  
DC  "C5'"  C N N 42  
DC  "C4'"  C N R 43  
DC  "O4'"  O N N 44  
DC  "C3'"  C N S 45  
DC  "O3'"  O N N 46  
DC  "C2'"  C N N 47  
DC  "C1'"  C N R 48  
DC  N1     N N N 49  
DC  C2     C N N 50  
DC  O2     O N N 51  
DC  N3     N N N 52  
DC  C4     C N N 53  
DC  N4     N N N 54  
DC  C5     C N N 55  
DC  C6     C N N 56  
DC  HOP3   H N N 57  
DC  HOP2   H N N 58  
DC  "H5'"  H N N 59  
DC  "H5''" H N N 60  
DC  "H4'"  H N N 61  
DC  "H3'"  H N N 62  
DC  "HO3'" H N N 63  
DC  "H2'"  H N N 64  
DC  "H2''" H N N 65  
DC  "H1'"  H N N 66  
DC  H41    H N N 67  
DC  H42    H N N 68  
DC  H5     H N N 69  
DC  H6     H N N 70  
DG  OP3    O N N 71  
DG  P      P N N 72  
DG  OP1    O N N 73  
DG  OP2    O N N 74  
DG  "O5'"  O N N 75  
DG  "C5'"  C N N 76  
DG  "C4'"  C N R 77  
DG  "O4'"  O N N 78  
DG  "C3'"  C N S 79  
DG  "O3'"  O N N 80  
DG  "C2'"  C N N 81  
DG  "C1'"  C N R 82  
DG  N9     N Y N 83  
DG  C8     C Y N 84  
DG  N7     N Y N 85  
DG  C5     C Y N 86  
DG  C6     C N N 87  
DG  O6     O N N 88  
DG  N1     N N N 89  
DG  C2     C N N 90  
DG  N2     N N N 91  
DG  N3     N N N 92  
DG  C4     C Y N 93  
DG  HOP3   H N N 94  
DG  HOP2   H N N 95  
DG  "H5'"  H N N 96  
DG  "H5''" H N N 97  
DG  "H4'"  H N N 98  
DG  "H3'"  H N N 99  
DG  "HO3'" H N N 100 
DG  "H2'"  H N N 101 
DG  "H2''" H N N 102 
DG  "H1'"  H N N 103 
DG  H8     H N N 104 
DG  H1     H N N 105 
DG  H21    H N N 106 
DG  H22    H N N 107 
DM5 C1     C Y N 108 
DM5 C2     C Y N 109 
DM5 C3     C Y N 110 
DM5 C4     C Y N 111 
DM5 C5     C Y N 112 
DM5 C6     C N N 113 
DM5 O6     O N N 114 
DM5 C7     C Y N 115 
DM5 C8     C Y N 116 
DM5 O8     O N N 117 
DM5 C9     C Y N 118 
DM5 C10    C N S 119 
DM5 O10    O N N 120 
DM5 C11    C N N 121 
DM5 C12    C N S 122 
DM5 O12    O N N 123 
DM5 C13    C N N 124 
DM5 O13    O N N 125 
DM5 C14    C N N 126 
DM5 C15    C N N 127 
DM5 C16    C Y N 128 
DM5 C17    C Y N 129 
DM5 O17    O N N 130 
DM5 C18    C Y N 131 
DM5 C19    C N N 132 
DM5 O19    O N N 133 
DM5 C20    C Y N 134 
DM5 "C1'"  C N R 135 
DM5 "C2'"  C N N 136 
DM5 "C3'"  C N S 137 
DM5 "N3'"  N N N 138 
DM5 "C4'"  C N S 139 
DM5 "O4'"  O N N 140 
DM5 "C5'"  C N S 141 
DM5 "O5'"  O N N 142 
DM5 "C6'"  C N N 143 
DM5 H1     H N N 144 
DM5 H2     H N N 145 
DM5 H3     H N N 146 
DM5 H4     H N N 147 
DM5 HO8    H N N 148 
DM5 H10    H N N 149 
DM5 H111   H N N 150 
DM5 H112   H N N 151 
DM5 HO12   H N N 152 
DM5 H141   H N N 153 
DM5 H142   H N N 154 
DM5 H143   H N N 155 
DM5 H151   H N N 156 
DM5 H152   H N N 157 
DM5 HO17   H N N 158 
DM5 "H1'"  H N N 159 
DM5 "H2'1" H N N 160 
DM5 "H2'2" H N N 161 
DM5 "H3'"  H N N 162 
DM5 "HN'1" H N N 163 
DM5 "HN'2" H N N 164 
DM5 "H4'"  H N N 165 
DM5 "HO4'" H N N 166 
DM5 "H5'"  H N N 167 
DM5 "H6'1" H N N 168 
DM5 "H6'2" H N N 169 
DM5 "H6'3" H N N 170 
DT  OP3    O N N 171 
DT  P      P N N 172 
DT  OP1    O N N 173 
DT  OP2    O N N 174 
DT  "O5'"  O N N 175 
DT  "C5'"  C N N 176 
DT  "C4'"  C N R 177 
DT  "O4'"  O N N 178 
DT  "C3'"  C N S 179 
DT  "O3'"  O N N 180 
DT  "C2'"  C N N 181 
DT  "C1'"  C N R 182 
DT  N1     N N N 183 
DT  C2     C N N 184 
DT  O2     O N N 185 
DT  N3     N N N 186 
DT  C4     C N N 187 
DT  O4     O N N 188 
DT  C5     C N N 189 
DT  C7     C N N 190 
DT  C6     C N N 191 
DT  HOP3   H N N 192 
DT  HOP2   H N N 193 
DT  "H5'"  H N N 194 
DT  "H5''" H N N 195 
DT  "H4'"  H N N 196 
DT  "H3'"  H N N 197 
DT  "HO3'" H N N 198 
DT  "H2'"  H N N 199 
DT  "H2''" H N N 200 
DT  "H1'"  H N N 201 
DT  H3     H N N 202 
DT  H71    H N N 203 
DT  H72    H N N 204 
DT  H73    H N N 205 
DT  H6     H N N 206 
HOH O      O N N 207 
HOH H1     H N N 208 
HOH H2     H N N 209 
SPM N1     N N N 210 
SPM C2     C N N 211 
SPM C3     C N N 212 
SPM C4     C N N 213 
SPM N5     N N N 214 
SPM C6     C N N 215 
SPM C7     C N N 216 
SPM C8     C N N 217 
SPM C9     C N N 218 
SPM N10    N N N 219 
SPM C11    C N N 220 
SPM C12    C N N 221 
SPM C13    C N N 222 
SPM N14    N N N 223 
SPM HN11   H N N 224 
SPM HN12   H N N 225 
SPM H21    H N N 226 
SPM H22    H N N 227 
SPM H31    H N N 228 
SPM H32    H N N 229 
SPM H41    H N N 230 
SPM H42    H N N 231 
SPM HN5    H N N 232 
SPM H61    H N N 233 
SPM H62    H N N 234 
SPM H71    H N N 235 
SPM H72    H N N 236 
SPM H81    H N N 237 
SPM H82    H N N 238 
SPM H91    H N N 239 
SPM H92    H N N 240 
SPM HN0    H N N 241 
SPM H111   H N N 242 
SPM H112   H N N 243 
SPM H121   H N N 244 
SPM H122   H N N 245 
SPM H131   H N N 246 
SPM H132   H N N 247 
SPM HN41   H N N 248 
SPM HN42   H N N 249 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DM5 C1    C2     doub Y N 113 
DM5 C1    C20    sing Y N 114 
DM5 C1    H1     sing N N 115 
DM5 C2    C3     sing Y N 116 
DM5 C2    H2     sing N N 117 
DM5 C3    C4     doub Y N 118 
DM5 C3    H3     sing N N 119 
DM5 C4    C5     sing Y N 120 
DM5 C4    H4     sing N N 121 
DM5 C5    C6     sing N N 122 
DM5 C5    C20    doub Y N 123 
DM5 C6    O6     doub N N 124 
DM5 C6    C7     sing N N 125 
DM5 C7    C8     doub Y N 126 
DM5 C7    C18    sing Y N 127 
DM5 C8    O8     sing N N 128 
DM5 C8    C9     sing Y N 129 
DM5 O8    HO8    sing N N 130 
DM5 C9    C10    sing N N 131 
DM5 C9    C16    doub Y N 132 
DM5 C10   O10    sing N N 133 
DM5 C10   C11    sing N N 134 
DM5 C10   H10    sing N N 135 
DM5 O10   "C1'"  sing N N 136 
DM5 C11   C12    sing N N 137 
DM5 C11   H111   sing N N 138 
DM5 C11   H112   sing N N 139 
DM5 C12   O12    sing N N 140 
DM5 C12   C13    sing N N 141 
DM5 C12   C15    sing N N 142 
DM5 O12   HO12   sing N N 143 
DM5 C13   O13    doub N N 144 
DM5 C13   C14    sing N N 145 
DM5 C14   H141   sing N N 146 
DM5 C14   H142   sing N N 147 
DM5 C14   H143   sing N N 148 
DM5 C15   C16    sing N N 149 
DM5 C15   H151   sing N N 150 
DM5 C15   H152   sing N N 151 
DM5 C16   C17    sing Y N 152 
DM5 C17   O17    sing N N 153 
DM5 C17   C18    doub Y N 154 
DM5 O17   HO17   sing N N 155 
DM5 C18   C19    sing N N 156 
DM5 C19   O19    doub N N 157 
DM5 C19   C20    sing N N 158 
DM5 "C1'" "C2'"  sing N N 159 
DM5 "C1'" "O5'"  sing N N 160 
DM5 "C1'" "H1'"  sing N N 161 
DM5 "C2'" "C3'"  sing N N 162 
DM5 "C2'" "H2'1" sing N N 163 
DM5 "C2'" "H2'2" sing N N 164 
DM5 "C3'" "N3'"  sing N N 165 
DM5 "C3'" "C4'"  sing N N 166 
DM5 "C3'" "H3'"  sing N N 167 
DM5 "N3'" "HN'1" sing N N 168 
DM5 "N3'" "HN'2" sing N N 169 
DM5 "C4'" "O4'"  sing N N 170 
DM5 "C4'" "C5'"  sing N N 171 
DM5 "C4'" "H4'"  sing N N 172 
DM5 "O4'" "HO4'" sing N N 173 
DM5 "C5'" "O5'"  sing N N 174 
DM5 "C5'" "C6'"  sing N N 175 
DM5 "C5'" "H5'"  sing N N 176 
DM5 "C6'" "H6'1" sing N N 177 
DM5 "C6'" "H6'2" sing N N 178 
DM5 "C6'" "H6'3" sing N N 179 
DT  OP3   P      sing N N 180 
DT  OP3   HOP3   sing N N 181 
DT  P     OP1    doub N N 182 
DT  P     OP2    sing N N 183 
DT  P     "O5'"  sing N N 184 
DT  OP2   HOP2   sing N N 185 
DT  "O5'" "C5'"  sing N N 186 
DT  "C5'" "C4'"  sing N N 187 
DT  "C5'" "H5'"  sing N N 188 
DT  "C5'" "H5''" sing N N 189 
DT  "C4'" "O4'"  sing N N 190 
DT  "C4'" "C3'"  sing N N 191 
DT  "C4'" "H4'"  sing N N 192 
DT  "O4'" "C1'"  sing N N 193 
DT  "C3'" "O3'"  sing N N 194 
DT  "C3'" "C2'"  sing N N 195 
DT  "C3'" "H3'"  sing N N 196 
DT  "O3'" "HO3'" sing N N 197 
DT  "C2'" "C1'"  sing N N 198 
DT  "C2'" "H2'"  sing N N 199 
DT  "C2'" "H2''" sing N N 200 
DT  "C1'" N1     sing N N 201 
DT  "C1'" "H1'"  sing N N 202 
DT  N1    C2     sing N N 203 
DT  N1    C6     sing N N 204 
DT  C2    O2     doub N N 205 
DT  C2    N3     sing N N 206 
DT  N3    C4     sing N N 207 
DT  N3    H3     sing N N 208 
DT  C4    O4     doub N N 209 
DT  C4    C5     sing N N 210 
DT  C5    C7     sing N N 211 
DT  C5    C6     doub N N 212 
DT  C7    H71    sing N N 213 
DT  C7    H72    sing N N 214 
DT  C7    H73    sing N N 215 
DT  C6    H6     sing N N 216 
HOH O     H1     sing N N 217 
HOH O     H2     sing N N 218 
SPM N1    C2     sing N N 219 
SPM N1    HN11   sing N N 220 
SPM N1    HN12   sing N N 221 
SPM C2    C3     sing N N 222 
SPM C2    H21    sing N N 223 
SPM C2    H22    sing N N 224 
SPM C3    C4     sing N N 225 
SPM C3    H31    sing N N 226 
SPM C3    H32    sing N N 227 
SPM C4    N5     sing N N 228 
SPM C4    H41    sing N N 229 
SPM C4    H42    sing N N 230 
SPM N5    C6     sing N N 231 
SPM N5    HN5    sing N N 232 
SPM C6    C7     sing N N 233 
SPM C6    H61    sing N N 234 
SPM C6    H62    sing N N 235 
SPM C7    C8     sing N N 236 
SPM C7    H71    sing N N 237 
SPM C7    H72    sing N N 238 
SPM C8    C9     sing N N 239 
SPM C8    H81    sing N N 240 
SPM C8    H82    sing N N 241 
SPM C9    N10    sing N N 242 
SPM C9    H91    sing N N 243 
SPM C9    H92    sing N N 244 
SPM N10   C11    sing N N 245 
SPM N10   HN0    sing N N 246 
SPM C11   C12    sing N N 247 
SPM C11   H111   sing N N 248 
SPM C11   H112   sing N N 249 
SPM C12   C13    sing N N 250 
SPM C12   H121   sing N N 251 
SPM C12   H122   sing N N 252 
SPM C13   N14    sing N N 253 
SPM C13   H131   sing N N 254 
SPM C13   H132   sing N N 255 
SPM N14   HN41   sing N N 256 
SPM N14   HN42   sing N N 257 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
198D 'double helix'        
198D 'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 B DC 1 1_555 A DG 6 1_555 -0.122 -0.199 -0.258 10.020  2.785  -4.696 1  B_DC7:DG6_A   B 7  ? A 6  ? 19 1 
1 B DG 2 1_555 A DC 5 1_555 -0.159 -0.133 -0.357 -15.917 0.325  3.027  2  B_DG8:DC5_A   B 8  ? A 5  ? 19 1 
1 B DA 3 1_555 A DT 4 1_555 0.089  -0.232 -0.251 -5.124  -9.339 0.928  3  B_DA9:DT4_A   B 9  ? A 4  ? 20 1 
1 B DT 4 1_555 A DA 3 1_555 -0.354 -0.216 0.278  -2.573  -9.119 3.487  4  B_DT10:DA3_A  B 10 ? A 3  ? 20 1 
1 B DC 5 1_555 A DG 2 1_555 0.209  -0.219 -0.454 19.325  -2.285 -1.699 5  B_DC11:DG2_A  B 11 ? A 2  ? 19 1 
1 B DG 6 1_555 A DC 1 1_555 -0.059 -0.114 -0.055 -6.693  -1.889 3.018  6  B_DG12:DC1_A  B 12 ? A 1  ? 19 1 
1 D DC 1 1_555 C DG 6 1_555 0.151  -0.215 -0.195 11.208  1.934  -4.330 7  D_DC19:DG18_C D 19 ? C 18 ? 19 1 
1 D DG 2 1_555 C DC 5 1_555 -0.163 -0.188 -0.265 -16.167 -0.785 -0.885 8  D_DG20:DC17_C D 20 ? C 17 ? 19 1 
1 D DA 3 1_555 C DT 4 1_555 -0.093 -0.246 0.095  -5.938  -9.666 1.391  9  D_DA21:DT16_C D 21 ? C 16 ? 20 1 
1 D DT 4 1_555 C DA 3 1_555 0.707  -0.401 0.004  2.896   -8.686 2.460  10 D_DT22:DA15_C D 22 ? C 15 ? 20 1 
1 D DC 5 1_555 C DG 2 1_555 0.121  -0.142 -0.560 19.745  0.230  0.518  11 D_DC23:DG14_C D 23 ? C 14 ? 19 1 
1 D DG 6 1_555 C DC 1 1_555 0.366  -0.043 -0.035 -3.010  1.257  0.571  12 D_DG24:DC13_C D 24 ? C 13 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 B DC 1 1_555 A DG 6 1_555 B DG 2 1_555 A DC 5 1_555 1.408  1.107  7.130 4.656  0.482  33.968 1.710  -0.772 7.268 0.821  -7.922  
34.279 1  BB_DC7DG8:DC5DG6_AA     B 7  ? A 6  ? B 8  ? A 5  ? 
1 B DG 2 1_555 A DC 5 1_555 B DA 3 1_555 A DT 4 1_555 -1.659 1.065  3.121 -3.165 0.665  34.859 1.672  2.292  3.273 1.108  5.270   
35.005 2  BB_DG8DA9:DT4DC5_AA     B 8  ? A 5  ? B 9  ? A 4  ? 
1 B DA 3 1_555 A DT 4 1_555 B DT 4 1_555 A DA 3 1_555 0.236  -0.553 3.345 -3.532 -2.910 26.340 -0.419 -1.454 3.326 -6.325 7.676   
26.728 3  BB_DA9DT10:DA3DT4_AA    B 9  ? A 4  ? B 10 ? A 3  ? 
1 B DT 4 1_555 A DA 3 1_555 B DC 5 1_555 A DG 2 1_555 1.041  1.440  2.788 8.362  0.081  36.899 2.213  -0.651 2.949 0.126  -13.006 
37.802 4  BB_DT10DC11:DG2DA3_AA   B 10 ? A 3  ? B 11 ? A 2  ? 
1 B DC 5 1_555 A DG 2 1_555 B DG 6 1_555 A DC 1 1_555 -0.747 1.336  7.098 -4.981 1.986  34.389 1.568  -0.420 7.196 3.334  8.361   
34.792 5  BB_DC11DG12:DC1DG2_AA   B 11 ? A 2  ? B 12 ? A 1  ? 
1 B DG 6 1_555 A DC 1 1_555 D DC 1 1_555 C DG 6 1_555 -0.418 -0.254 2.970 0.832  2.620  14.534 -2.995 2.263  2.851 10.236 -3.252  
14.790 6  BD_DG12DC19:DG18DC1_CA  B 12 ? A 1  ? D 19 ? C 18 ? 
1 D DC 1 1_555 C DG 6 1_555 D DG 2 1_555 C DC 5 1_555 1.508  0.966  7.157 2.889  -2.061 34.456 2.320  -1.556 7.187 -3.467 -4.861  
34.633 7  DD_DC19DG20:DC17DG18_CC D 19 ? C 18 ? D 20 ? C 17 ? 
1 D DG 2 1_555 C DC 5 1_555 D DA 3 1_555 C DT 4 1_555 -1.234 0.822  3.168 -2.767 -2.255 29.969 2.028  1.820  3.197 -4.342 5.326   
30.176 8  DD_DG20DA21:DT16DC17_CC D 20 ? C 17 ? D 21 ? C 16 ? 
1 D DA 3 1_555 C DT 4 1_555 D DT 4 1_555 C DA 3 1_555 -0.002 -0.458 3.191 1.940  -0.428 37.619 -0.655 0.249  3.192 -0.663 -3.006  
37.670 9  DD_DA21DT22:DA15DT16_CC D 21 ? C 16 ? D 22 ? C 15 ? 
1 D DT 4 1_555 C DA 3 1_555 D DC 5 1_555 C DG 2 1_555 1.362  1.399  2.881 7.680  4.140  30.122 1.841  -1.130 3.279 7.764  -14.401 
31.332 10 DD_DT22DC23:DG14DA15_CC D 22 ? C 15 ? D 23 ? C 14 ? 
1 D DC 5 1_555 C DG 2 1_555 D DG 6 1_555 C DC 1 1_555 -1.283 1.361  7.049 -8.787 0.520  35.238 2.025  -0.655 7.171 0.842  14.242  
36.287 11 DD_DC23DG24:DC13DG14_CC D 23 ? C 14 ? D 24 ? C 13 ? 
# 
_atom_sites.entry_id                    198D 
_atom_sites.fract_transf_matrix[1][1]   0.018869 
_atom_sites.fract_transf_matrix[1][2]   0.010894 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.021788 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.030243 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_