data_1A4H # _entry.id 1A4H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1A4H pdb_00001a4h 10.2210/pdb1a4h/pdb WWPDB D_1000170381 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1A4H _pdbx_database_status.recvd_initial_deposition_date 1998-01-29 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Prodromou, C.' 1 'Roe, S.M.' 2 'Pearl, L.H.' 3 # _citation.id primary _citation.title 'Identification and structural characterization of the ATP/ADP-binding site in the Hsp90 molecular chaperone' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 90 _citation.page_first 65 _citation.page_last 75 _citation.year 1997 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9230303 _citation.pdbx_database_id_DOI '10.1016/S0092-8674(00)80314-1' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Prodromou, C.' 1 ? primary 'Roe, S.M.' 2 ? primary ;O'Brien, R. ; 3 ? primary 'Ladbury, J.E.' 4 ? primary 'Piper, P.W.' 5 ? primary 'Pearl, L.H.' 6 ? # _cell.entry_id 1A4H _cell.length_a 74.120 _cell.length_b 74.120 _cell.length_c 111.350 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1A4H _symmetry.space_group_name_H-M 'P 43 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'HEAT SHOCK PROTEIN 90' 26134.799 1 ? ? 'N-TERMINAL DOMAIN' 'GELDANAMYCIN IN ATP BINDING SITE' 2 non-polymer syn GELDANAMYCIN 560.636 1 ? ? ? ? 3 water nat water 18.015 154 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name HSP90 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRGSHHHHHHMASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP EQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWES NAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIP ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSHHHHHHMASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP EQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWES NAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 MET n 1 12 ALA n 1 13 SER n 1 14 GLU n 1 15 THR n 1 16 PHE n 1 17 GLU n 1 18 PHE n 1 19 GLN n 1 20 ALA n 1 21 GLU n 1 22 ILE n 1 23 THR n 1 24 GLN n 1 25 LEU n 1 26 MET n 1 27 SER n 1 28 LEU n 1 29 ILE n 1 30 ILE n 1 31 ASN n 1 32 THR n 1 33 VAL n 1 34 TYR n 1 35 SER n 1 36 ASN n 1 37 LYS n 1 38 GLU n 1 39 ILE n 1 40 PHE n 1 41 LEU n 1 42 ARG n 1 43 GLU n 1 44 LEU n 1 45 ILE n 1 46 SER n 1 47 ASN n 1 48 ALA n 1 49 SER n 1 50 ASP n 1 51 ALA n 1 52 LEU n 1 53 ASP n 1 54 LYS n 1 55 ILE n 1 56 ARG n 1 57 TYR n 1 58 LYS n 1 59 SER n 1 60 LEU n 1 61 SER n 1 62 ASP n 1 63 PRO n 1 64 LYS n 1 65 GLN n 1 66 LEU n 1 67 GLU n 1 68 THR n 1 69 GLU n 1 70 PRO n 1 71 ASP n 1 72 LEU n 1 73 PHE n 1 74 ILE n 1 75 ARG n 1 76 ILE n 1 77 THR n 1 78 PRO n 1 79 LYS n 1 80 PRO n 1 81 GLU n 1 82 GLN n 1 83 LYS n 1 84 VAL n 1 85 LEU n 1 86 GLU n 1 87 ILE n 1 88 ARG n 1 89 ASP n 1 90 SER n 1 91 GLY n 1 92 ILE n 1 93 GLY n 1 94 MET n 1 95 THR n 1 96 LYS n 1 97 ALA n 1 98 GLU n 1 99 LEU n 1 100 ILE n 1 101 ASN n 1 102 ASN n 1 103 LEU n 1 104 GLY n 1 105 THR n 1 106 ILE n 1 107 ALA n 1 108 LYS n 1 109 SER n 1 110 GLY n 1 111 THR n 1 112 LYS n 1 113 ALA n 1 114 PHE n 1 115 MET n 1 116 GLU n 1 117 ALA n 1 118 LEU n 1 119 SER n 1 120 ALA n 1 121 GLY n 1 122 ALA n 1 123 ASP n 1 124 VAL n 1 125 SER n 1 126 MET n 1 127 ILE n 1 128 GLY n 1 129 GLN n 1 130 PHE n 1 131 GLY n 1 132 VAL n 1 133 GLY n 1 134 PHE n 1 135 TYR n 1 136 SER n 1 137 LEU n 1 138 PHE n 1 139 LEU n 1 140 VAL n 1 141 ALA n 1 142 ASP n 1 143 ARG n 1 144 VAL n 1 145 GLN n 1 146 VAL n 1 147 ILE n 1 148 SER n 1 149 LYS n 1 150 SER n 1 151 ASN n 1 152 ASP n 1 153 ASP n 1 154 GLU n 1 155 GLN n 1 156 TYR n 1 157 ILE n 1 158 TRP n 1 159 GLU n 1 160 SER n 1 161 ASN n 1 162 ALA n 1 163 GLY n 1 164 GLY n 1 165 SER n 1 166 PHE n 1 167 THR n 1 168 VAL n 1 169 THR n 1 170 LEU n 1 171 ASP n 1 172 GLU n 1 173 VAL n 1 174 ASN n 1 175 GLU n 1 176 ARG n 1 177 ILE n 1 178 GLY n 1 179 ARG n 1 180 GLY n 1 181 THR n 1 182 ILE n 1 183 LEU n 1 184 ARG n 1 185 LEU n 1 186 PHE n 1 187 LEU n 1 188 LYS n 1 189 ASP n 1 190 ASP n 1 191 GLN n 1 192 LEU n 1 193 GLU n 1 194 TYR n 1 195 LEU n 1 196 GLU n 1 197 GLU n 1 198 LYS n 1 199 ARG n 1 200 ILE n 1 201 LYS n 1 202 GLU n 1 203 VAL n 1 204 ILE n 1 205 LYS n 1 206 ARG n 1 207 HIS n 1 208 SER n 1 209 GLU n 1 210 PHE n 1 211 VAL n 1 212 ALA n 1 213 TYR n 1 214 PRO n 1 215 ILE n 1 216 GLN n 1 217 LEU n 1 218 VAL n 1 219 VAL n 1 220 THR n 1 221 LYS n 1 222 GLU n 1 223 VAL n 1 224 GLU n 1 225 LYS n 1 226 GLU n 1 227 VAL n 1 228 PRO n 1 229 ILE n 1 230 PRO n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ;baker's yeast ; _entity_src_nat.pdbx_organism_scientific 'Saccharomyces cerevisiae' _entity_src_nat.pdbx_ncbi_taxonomy_id 4932 _entity_src_nat.genus Saccharomyces _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HSP82_YEAST _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P02829 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDS GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTL DEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDK KPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAI LFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKL IEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLK AVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGD QVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVK DLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLNIDEDEETETAPEASTAAPVEEVPADTEMEEVD ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1A4H _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 11 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 230 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02829 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 220 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 220 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GDM non-polymer . GELDANAMYCIN ? 'C29 H40 N2 O9' 560.636 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1A4H _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.25 _exptl_crystal.density_percent_sol 62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'under oil' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;THE PROTEIN/GELDANAMYCIN COMPLEX WAS CRYSTALLISED UNDER OIL IN TERASAKI PLATES. THE DROPS CONTAINED 27MG/ML PROTEIN, 9.75% PEGME 550, 65MM AMMONIUM SULFATE, 25% GLYCEROL AND 32.5MM SODIUM SUCCINATE AT PH 5.0, under oil ; # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 1996-05 _diffrn_detector.details 'YALE/MSC MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1A4H _reflns.observed_criterion_sigma_I 1. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.5 _reflns.number_obs 10938 _reflns.number_all ? _reflns.percent_possible_obs 97.4 _reflns.pdbx_Rmerge_I_obs 0.0680000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.6 _reflns.B_iso_Wilson_estimate 37.6 _reflns.pdbx_redundancy 4.8 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.55 _reflns_shell.percent_possible_all 85.9 _reflns_shell.Rmerge_I_obs 0.2930000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.6 _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.entry_id 1A4H _refine.ls_number_reflns_obs 10685 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.00100 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2060000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2060000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 29.8 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;BULK SOLVENT MODEL USED. THIS IS THE TETRAGONAL CRYSTAL FORM OF HSP90. THE SIX RESIDUE HISTIDINE TAG USED FOR PURIFICATION WAS NOT REMOVED PRIOR TO CRYSTALLISATION. IT IS NOT SEEN IN THE ELECTRON DENSITY MAPS. ; _refine.pdbx_starting_model 'PDB ENTRY 1AH6' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1A4H _refine_analyze.Luzzati_coordinate_error_obs 0.29 _refine_analyze.Luzzati_sigma_a_obs 0.38 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1698 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 154 _refine_hist.number_atoms_total 1892 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 26.9 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.64 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.66 _refine_ls_shell.number_reflns_R_work 1613 _refine_ls_shell.R_factor_R_work 0.3220000 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 GMY.PAR WATER.TOP 'X-RAY DIFFRACTION' 3 WATER.PAR GMY.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1A4H _struct.title 'STRUCTURE OF THE N-TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE IN COMPLEX WITH GELDANAMYCIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1A4H _struct_keywords.pdbx_keywords CHAPERONE _struct_keywords.text 'CHAPERONE, ATP-BINDING, HEAT SHOCK' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 20 ? ASN A 31 ? ALA A 10 ASN A 21 1 ? 12 HELX_P HELX_P2 2 LYS A 37 ? LEU A 60 ? LYS A 27 LEU A 50 5 ? 24 HELX_P HELX_P3 3 PRO A 63 ? GLU A 67 ? PRO A 53 GLU A 57 5 ? 5 HELX_P HELX_P4 4 PRO A 80 ? GLN A 82 ? PRO A 70 GLN A 72 5 ? 3 HELX_P HELX_P5 5 LYS A 96 ? ASN A 102 ? LYS A 86 ASN A 92 1 ? 7 HELX_P HELX_P6 6 THR A 111 ? ALA A 120 ? THR A 101 ALA A 110 1 ? 10 HELX_P HELX_P7 7 VAL A 124 ? PHE A 130 ? VAL A 114 PHE A 120 5 ? 7 HELX_P HELX_P8 8 GLY A 133 ? LEU A 139 ? GLY A 123 LEU A 129 5 ? 7 HELX_P HELX_P9 9 LEU A 192 ? LEU A 195 ? LEU A 182 LEU A 185 5 ? 4 HELX_P HELX_P10 10 GLU A 197 ? HIS A 207 ? GLU A 187 HIS A 197 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 14 ? GLU A 17 ? GLU A 4 GLU A 7 A 2 SER A 165 ? LEU A 170 ? SER A 155 LEU A 160 A 3 GLN A 155 ? SER A 160 ? GLN A 145 SER A 150 A 4 ALA A 141 ? LYS A 149 ? ALA A 131 LYS A 139 A 5 GLY A 180 ? LEU A 187 ? GLY A 170 LEU A 177 A 6 VAL A 84 ? ASP A 89 ? VAL A 74 ASP A 79 A 7 PHE A 73 ? LYS A 79 ? PHE A 63 LYS A 69 A 8 PRO A 214 ? VAL A 218 ? PRO A 204 VAL A 208 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 14 ? O GLU A 4 N VAL A 168 ? N VAL A 158 A 2 3 O THR A 167 ? O THR A 157 N GLU A 159 ? N GLU A 149 A 3 4 O TYR A 156 ? O TYR A 146 N SER A 148 ? N SER A 138 A 4 5 O ASP A 142 ? O ASP A 132 N PHE A 186 ? N PHE A 176 A 5 6 O THR A 181 ? O THR A 171 N ASP A 89 ? N ASP A 79 A 6 7 O VAL A 84 ? O VAL A 74 N LYS A 79 ? N LYS A 69 A 7 8 O ILE A 74 ? O ILE A 64 N PRO A 214 ? N PRO A 204 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GDM _struct_site.pdbx_auth_seq_id 300 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 17 _struct_site.details 'BINDING SITE FOR RESIDUE GDM A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 ASN A 47 ? ASN A 37 . ? 1_555 ? 2 AC1 17 ASP A 50 ? ASP A 40 . ? 1_555 ? 3 AC1 17 ALA A 51 ? ALA A 41 . ? 1_555 ? 4 AC1 17 LYS A 54 ? LYS A 44 . ? 1_555 ? 5 AC1 17 ASP A 89 ? ASP A 79 . ? 1_555 ? 6 AC1 17 ILE A 92 ? ILE A 82 . ? 1_555 ? 7 AC1 17 MET A 94 ? MET A 84 . ? 1_555 ? 8 AC1 17 ASN A 102 ? ASN A 92 . ? 1_555 ? 9 AC1 17 LEU A 103 ? LEU A 93 . ? 1_555 ? 10 AC1 17 LYS A 108 ? LYS A 98 . ? 1_555 ? 11 AC1 17 GLY A 131 ? GLY A 121 . ? 1_555 ? 12 AC1 17 VAL A 132 ? VAL A 122 . ? 1_555 ? 13 AC1 17 GLY A 133 ? GLY A 123 . ? 1_555 ? 14 AC1 17 PHE A 134 ? PHE A 124 . ? 1_555 ? 15 AC1 17 THR A 181 ? THR A 171 . ? 1_555 ? 16 AC1 17 HOH C . ? HOH A 400 . ? 1_555 ? 17 AC1 17 HOH C . ? HOH A 529 . ? 1_555 ? # _database_PDB_matrix.entry_id 1A4H _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1A4H _atom_sites.fract_transf_matrix[1][1] 0.013492 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013492 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008981 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'STEREOCHEMISTRY AT THE C ATOM OF LIGAND GDM IS DIFFERENT FROM THAT OF GELDANAMYCIN' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -9 ? ? ? A . n A 1 2 ARG 2 -8 ? ? ? A . n A 1 3 GLY 3 -7 ? ? ? A . n A 1 4 SER 4 -6 ? ? ? A . n A 1 5 HIS 5 -5 ? ? ? A . n A 1 6 HIS 6 -4 ? ? ? A . n A 1 7 HIS 7 -3 ? ? ? A . n A 1 8 HIS 8 -2 ? ? ? A . n A 1 9 HIS 9 -1 ? ? ? A . n A 1 10 HIS 10 0 ? ? ? A . n A 1 11 MET 11 1 1 MET MET A . n A 1 12 ALA 12 2 2 ALA ALA A . n A 1 13 SER 13 3 3 SER SER A . n A 1 14 GLU 14 4 4 GLU GLU A . n A 1 15 THR 15 5 5 THR THR A . n A 1 16 PHE 16 6 6 PHE PHE A . n A 1 17 GLU 17 7 7 GLU GLU A . n A 1 18 PHE 18 8 8 PHE PHE A . n A 1 19 GLN 19 9 9 GLN GLN A . n A 1 20 ALA 20 10 10 ALA ALA A . n A 1 21 GLU 21 11 11 GLU GLU A . n A 1 22 ILE 22 12 12 ILE ILE A . n A 1 23 THR 23 13 13 THR THR A . n A 1 24 GLN 24 14 14 GLN GLN A . n A 1 25 LEU 25 15 15 LEU LEU A . n A 1 26 MET 26 16 16 MET MET A . n A 1 27 SER 27 17 17 SER SER A . n A 1 28 LEU 28 18 18 LEU LEU A . n A 1 29 ILE 29 19 19 ILE ILE A . n A 1 30 ILE 30 20 20 ILE ILE A . n A 1 31 ASN 31 21 21 ASN ASN A . n A 1 32 THR 32 22 22 THR THR A . n A 1 33 VAL 33 23 23 VAL VAL A . n A 1 34 TYR 34 24 24 TYR TYR A . n A 1 35 SER 35 25 25 SER SER A . n A 1 36 ASN 36 26 26 ASN ASN A . n A 1 37 LYS 37 27 27 LYS LYS A . n A 1 38 GLU 38 28 28 GLU GLU A . n A 1 39 ILE 39 29 29 ILE ILE A . n A 1 40 PHE 40 30 30 PHE PHE A . n A 1 41 LEU 41 31 31 LEU LEU A . n A 1 42 ARG 42 32 32 ARG ARG A . n A 1 43 GLU 43 33 33 GLU GLU A . n A 1 44 LEU 44 34 34 LEU LEU A . n A 1 45 ILE 45 35 35 ILE ILE A . n A 1 46 SER 46 36 36 SER SER A . n A 1 47 ASN 47 37 37 ASN ASN A . n A 1 48 ALA 48 38 38 ALA ALA A . n A 1 49 SER 49 39 39 SER SER A . n A 1 50 ASP 50 40 40 ASP ASP A . n A 1 51 ALA 51 41 41 ALA ALA A . n A 1 52 LEU 52 42 42 LEU LEU A . n A 1 53 ASP 53 43 43 ASP ASP A . n A 1 54 LYS 54 44 44 LYS LYS A . n A 1 55 ILE 55 45 45 ILE ILE A . n A 1 56 ARG 56 46 46 ARG ARG A . n A 1 57 TYR 57 47 47 TYR TYR A . n A 1 58 LYS 58 48 48 LYS LYS A . n A 1 59 SER 59 49 49 SER SER A . n A 1 60 LEU 60 50 50 LEU LEU A . n A 1 61 SER 61 51 51 SER SER A . n A 1 62 ASP 62 52 52 ASP ASP A . n A 1 63 PRO 63 53 53 PRO PRO A . n A 1 64 LYS 64 54 54 LYS LYS A . n A 1 65 GLN 65 55 55 GLN GLN A . n A 1 66 LEU 66 56 56 LEU LEU A . n A 1 67 GLU 67 57 57 GLU GLU A . n A 1 68 THR 68 58 58 THR THR A . n A 1 69 GLU 69 59 59 GLU GLU A . n A 1 70 PRO 70 60 60 PRO PRO A . n A 1 71 ASP 71 61 61 ASP ASP A . n A 1 72 LEU 72 62 62 LEU LEU A . n A 1 73 PHE 73 63 63 PHE PHE A . n A 1 74 ILE 74 64 64 ILE ILE A . n A 1 75 ARG 75 65 65 ARG ARG A . n A 1 76 ILE 76 66 66 ILE ILE A . n A 1 77 THR 77 67 67 THR THR A . n A 1 78 PRO 78 68 68 PRO PRO A . n A 1 79 LYS 79 69 69 LYS LYS A . n A 1 80 PRO 80 70 70 PRO PRO A . n A 1 81 GLU 81 71 71 GLU GLU A . n A 1 82 GLN 82 72 72 GLN GLN A . n A 1 83 LYS 83 73 73 LYS LYS A . n A 1 84 VAL 84 74 74 VAL VAL A . n A 1 85 LEU 85 75 75 LEU LEU A . n A 1 86 GLU 86 76 76 GLU GLU A . n A 1 87 ILE 87 77 77 ILE ILE A . n A 1 88 ARG 88 78 78 ARG ARG A . n A 1 89 ASP 89 79 79 ASP ASP A . n A 1 90 SER 90 80 80 SER SER A . n A 1 91 GLY 91 81 81 GLY GLY A . n A 1 92 ILE 92 82 82 ILE ILE A . n A 1 93 GLY 93 83 83 GLY GLY A . n A 1 94 MET 94 84 84 MET MET A . n A 1 95 THR 95 85 85 THR THR A . n A 1 96 LYS 96 86 86 LYS LYS A . n A 1 97 ALA 97 87 87 ALA ALA A . n A 1 98 GLU 98 88 88 GLU GLU A . n A 1 99 LEU 99 89 89 LEU LEU A . n A 1 100 ILE 100 90 90 ILE ILE A . n A 1 101 ASN 101 91 91 ASN ASN A . n A 1 102 ASN 102 92 92 ASN ASN A . n A 1 103 LEU 103 93 93 LEU LEU A . n A 1 104 GLY 104 94 94 GLY GLY A . n A 1 105 THR 105 95 95 THR THR A . n A 1 106 ILE 106 96 96 ILE ILE A . n A 1 107 ALA 107 97 97 ALA ALA A . n A 1 108 LYS 108 98 98 LYS LYS A . n A 1 109 SER 109 99 99 SER SER A . n A 1 110 GLY 110 100 100 GLY GLY A . n A 1 111 THR 111 101 101 THR THR A . n A 1 112 LYS 112 102 102 LYS LYS A . n A 1 113 ALA 113 103 103 ALA ALA A . n A 1 114 PHE 114 104 104 PHE PHE A . n A 1 115 MET 115 105 105 MET MET A . n A 1 116 GLU 116 106 106 GLU GLU A . n A 1 117 ALA 117 107 107 ALA ALA A . n A 1 118 LEU 118 108 108 LEU LEU A . n A 1 119 SER 119 109 109 SER SER A . n A 1 120 ALA 120 110 110 ALA ALA A . n A 1 121 GLY 121 111 111 GLY GLY A . n A 1 122 ALA 122 112 112 ALA ALA A . n A 1 123 ASP 123 113 113 ASP ASP A . n A 1 124 VAL 124 114 114 VAL VAL A . n A 1 125 SER 125 115 115 SER SER A . n A 1 126 MET 126 116 116 MET MET A . n A 1 127 ILE 127 117 117 ILE ILE A . n A 1 128 GLY 128 118 118 GLY GLY A . n A 1 129 GLN 129 119 119 GLN GLN A . n A 1 130 PHE 130 120 120 PHE PHE A . n A 1 131 GLY 131 121 121 GLY GLY A . n A 1 132 VAL 132 122 122 VAL VAL A . n A 1 133 GLY 133 123 123 GLY GLY A . n A 1 134 PHE 134 124 124 PHE PHE A . n A 1 135 TYR 135 125 125 TYR TYR A . n A 1 136 SER 136 126 126 SER SER A . n A 1 137 LEU 137 127 127 LEU LEU A . n A 1 138 PHE 138 128 128 PHE PHE A . n A 1 139 LEU 139 129 129 LEU LEU A . n A 1 140 VAL 140 130 130 VAL VAL A . n A 1 141 ALA 141 131 131 ALA ALA A . n A 1 142 ASP 142 132 132 ASP ASP A . n A 1 143 ARG 143 133 133 ARG ARG A . n A 1 144 VAL 144 134 134 VAL VAL A . n A 1 145 GLN 145 135 135 GLN GLN A . n A 1 146 VAL 146 136 136 VAL VAL A . n A 1 147 ILE 147 137 137 ILE ILE A . n A 1 148 SER 148 138 138 SER SER A . n A 1 149 LYS 149 139 139 LYS LYS A . n A 1 150 SER 150 140 140 SER SER A . n A 1 151 ASN 151 141 141 ASN ASN A . n A 1 152 ASP 152 142 142 ASP ASP A . n A 1 153 ASP 153 143 143 ASP ASP A . n A 1 154 GLU 154 144 144 GLU GLU A . n A 1 155 GLN 155 145 145 GLN GLN A . n A 1 156 TYR 156 146 146 TYR TYR A . n A 1 157 ILE 157 147 147 ILE ILE A . n A 1 158 TRP 158 148 148 TRP TRP A . n A 1 159 GLU 159 149 149 GLU GLU A . n A 1 160 SER 160 150 150 SER SER A . n A 1 161 ASN 161 151 151 ASN ASN A . n A 1 162 ALA 162 152 152 ALA ALA A . n A 1 163 GLY 163 153 153 GLY GLY A . n A 1 164 GLY 164 154 154 GLY GLY A . n A 1 165 SER 165 155 155 SER SER A . n A 1 166 PHE 166 156 156 PHE PHE A . n A 1 167 THR 167 157 157 THR THR A . n A 1 168 VAL 168 158 158 VAL VAL A . n A 1 169 THR 169 159 159 THR THR A . n A 1 170 LEU 170 160 160 LEU LEU A . n A 1 171 ASP 171 161 161 ASP ASP A . n A 1 172 GLU 172 162 162 GLU GLU A . n A 1 173 VAL 173 163 163 VAL VAL A . n A 1 174 ASN 174 164 164 ASN ASN A . n A 1 175 GLU 175 165 165 GLU GLU A . n A 1 176 ARG 176 166 166 ARG ARG A . n A 1 177 ILE 177 167 167 ILE ILE A . n A 1 178 GLY 178 168 168 GLY GLY A . n A 1 179 ARG 179 169 169 ARG ARG A . n A 1 180 GLY 180 170 170 GLY GLY A . n A 1 181 THR 181 171 171 THR THR A . n A 1 182 ILE 182 172 172 ILE ILE A . n A 1 183 LEU 183 173 173 LEU LEU A . n A 1 184 ARG 184 174 174 ARG ARG A . n A 1 185 LEU 185 175 175 LEU LEU A . n A 1 186 PHE 186 176 176 PHE PHE A . n A 1 187 LEU 187 177 177 LEU LEU A . n A 1 188 LYS 188 178 178 LYS LYS A . n A 1 189 ASP 189 179 179 ASP ASP A . n A 1 190 ASP 190 180 180 ASP ASP A . n A 1 191 GLN 191 181 181 GLN GLN A . n A 1 192 LEU 192 182 182 LEU LEU A . n A 1 193 GLU 193 183 183 GLU GLU A . n A 1 194 TYR 194 184 184 TYR TYR A . n A 1 195 LEU 195 185 185 LEU LEU A . n A 1 196 GLU 196 186 186 GLU GLU A . n A 1 197 GLU 197 187 187 GLU GLU A . n A 1 198 LYS 198 188 188 LYS LYS A . n A 1 199 ARG 199 189 189 ARG ARG A . n A 1 200 ILE 200 190 190 ILE ILE A . n A 1 201 LYS 201 191 191 LYS LYS A . n A 1 202 GLU 202 192 192 GLU GLU A . n A 1 203 VAL 203 193 193 VAL VAL A . n A 1 204 ILE 204 194 194 ILE ILE A . n A 1 205 LYS 205 195 195 LYS LYS A . n A 1 206 ARG 206 196 196 ARG ARG A . n A 1 207 HIS 207 197 197 HIS HIS A . n A 1 208 SER 208 198 198 SER SER A . n A 1 209 GLU 209 199 199 GLU GLU A . n A 1 210 PHE 210 200 200 PHE PHE A . n A 1 211 VAL 211 201 201 VAL VAL A . n A 1 212 ALA 212 202 202 ALA ALA A . n A 1 213 TYR 213 203 203 TYR TYR A . n A 1 214 PRO 214 204 204 PRO PRO A . n A 1 215 ILE 215 205 205 ILE ILE A . n A 1 216 GLN 216 206 206 GLN GLN A . n A 1 217 LEU 217 207 207 LEU LEU A . n A 1 218 VAL 218 208 208 VAL VAL A . n A 1 219 VAL 219 209 209 VAL VAL A . n A 1 220 THR 220 210 210 THR THR A . n A 1 221 LYS 221 211 211 LYS LYS A . n A 1 222 GLU 222 212 212 GLU GLU A . n A 1 223 VAL 223 213 213 VAL VAL A . n A 1 224 GLU 224 214 214 GLU GLU A . n A 1 225 LYS 225 215 ? ? ? A . n A 1 226 GLU 226 216 ? ? ? A . n A 1 227 VAL 227 217 ? ? ? A . n A 1 228 PRO 228 218 ? ? ? A . n A 1 229 ILE 229 219 ? ? ? A . n A 1 230 PRO 230 220 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDM 1 300 300 GDM GMY A . C 3 HOH 1 400 400 HOH HOH A . C 3 HOH 2 401 401 HOH HOH A . C 3 HOH 3 402 402 HOH HOH A . C 3 HOH 4 403 403 HOH HOH A . C 3 HOH 5 404 404 HOH HOH A . C 3 HOH 6 405 405 HOH HOH A . C 3 HOH 7 406 406 HOH HOH A . C 3 HOH 8 407 407 HOH HOH A . C 3 HOH 9 408 408 HOH HOH A . C 3 HOH 10 409 409 HOH HOH A . C 3 HOH 11 410 410 HOH HOH A . C 3 HOH 12 411 411 HOH HOH A . C 3 HOH 13 412 412 HOH HOH A . C 3 HOH 14 413 413 HOH HOH A . C 3 HOH 15 414 414 HOH HOH A . C 3 HOH 16 415 415 HOH HOH A . C 3 HOH 17 416 416 HOH HOH A . C 3 HOH 18 417 417 HOH HOH A . C 3 HOH 19 418 418 HOH HOH A . C 3 HOH 20 419 419 HOH HOH A . C 3 HOH 21 420 420 HOH HOH A . C 3 HOH 22 421 421 HOH HOH A . C 3 HOH 23 422 422 HOH HOH A . C 3 HOH 24 423 423 HOH HOH A . C 3 HOH 25 424 424 HOH HOH A . C 3 HOH 26 425 425 HOH HOH A . C 3 HOH 27 426 426 HOH HOH A . C 3 HOH 28 427 427 HOH HOH A . C 3 HOH 29 428 428 HOH HOH A . C 3 HOH 30 429 429 HOH HOH A . C 3 HOH 31 430 430 HOH HOH A . C 3 HOH 32 431 431 HOH HOH A . C 3 HOH 33 432 432 HOH HOH A . C 3 HOH 34 433 433 HOH HOH A . C 3 HOH 35 434 434 HOH HOH A . C 3 HOH 36 435 435 HOH HOH A . C 3 HOH 37 436 436 HOH HOH A . C 3 HOH 38 437 437 HOH HOH A . C 3 HOH 39 438 438 HOH HOH A . C 3 HOH 40 439 439 HOH HOH A . C 3 HOH 41 440 440 HOH HOH A . C 3 HOH 42 441 441 HOH HOH A . C 3 HOH 43 442 442 HOH HOH A . C 3 HOH 44 443 443 HOH HOH A . C 3 HOH 45 444 444 HOH HOH A . C 3 HOH 46 445 445 HOH HOH A . C 3 HOH 47 446 446 HOH HOH A . C 3 HOH 48 447 447 HOH HOH A . C 3 HOH 49 448 448 HOH HOH A . C 3 HOH 50 449 449 HOH HOH A . C 3 HOH 51 450 450 HOH HOH A . C 3 HOH 52 451 451 HOH HOH A . C 3 HOH 53 452 452 HOH HOH A . C 3 HOH 54 453 453 HOH HOH A . C 3 HOH 55 454 454 HOH HOH A . C 3 HOH 56 455 455 HOH HOH A . C 3 HOH 57 456 456 HOH HOH A . C 3 HOH 58 457 457 HOH HOH A . C 3 HOH 59 458 458 HOH HOH A . C 3 HOH 60 459 459 HOH HOH A . C 3 HOH 61 460 460 HOH HOH A . C 3 HOH 62 461 461 HOH HOH A . C 3 HOH 63 462 462 HOH HOH A . C 3 HOH 64 463 463 HOH HOH A . C 3 HOH 65 464 464 HOH HOH A . C 3 HOH 66 465 465 HOH HOH A . C 3 HOH 67 466 466 HOH HOH A . C 3 HOH 68 467 467 HOH HOH A . C 3 HOH 69 468 468 HOH HOH A . C 3 HOH 70 469 469 HOH HOH A . C 3 HOH 71 470 470 HOH HOH A . C 3 HOH 72 471 471 HOH HOH A . C 3 HOH 73 472 472 HOH HOH A . C 3 HOH 74 473 473 HOH HOH A . C 3 HOH 75 474 474 HOH HOH A . C 3 HOH 76 475 475 HOH HOH A . C 3 HOH 77 476 476 HOH HOH A . C 3 HOH 78 477 477 HOH HOH A . C 3 HOH 79 478 478 HOH HOH A . C 3 HOH 80 479 479 HOH HOH A . C 3 HOH 81 480 480 HOH HOH A . C 3 HOH 82 481 481 HOH HOH A . C 3 HOH 83 482 482 HOH HOH A . C 3 HOH 84 483 483 HOH HOH A . C 3 HOH 85 484 484 HOH HOH A . C 3 HOH 86 485 485 HOH HOH A . C 3 HOH 87 486 486 HOH HOH A . C 3 HOH 88 487 487 HOH HOH A . C 3 HOH 89 488 488 HOH HOH A . C 3 HOH 90 489 489 HOH HOH A . C 3 HOH 91 490 490 HOH HOH A . C 3 HOH 92 491 491 HOH HOH A . C 3 HOH 93 492 492 HOH HOH A . C 3 HOH 94 493 493 HOH HOH A . C 3 HOH 95 494 494 HOH HOH A . C 3 HOH 96 495 495 HOH HOH A . C 3 HOH 97 496 496 HOH HOH A . C 3 HOH 98 497 497 HOH HOH A . C 3 HOH 99 498 498 HOH HOH A . C 3 HOH 100 499 499 HOH HOH A . C 3 HOH 101 500 500 HOH HOH A . C 3 HOH 102 501 501 HOH HOH A . C 3 HOH 103 502 502 HOH HOH A . C 3 HOH 104 503 503 HOH HOH A . C 3 HOH 105 504 504 HOH HOH A . C 3 HOH 106 505 505 HOH HOH A . C 3 HOH 107 506 506 HOH HOH A . C 3 HOH 108 507 507 HOH HOH A . C 3 HOH 109 508 508 HOH HOH A . C 3 HOH 110 509 509 HOH HOH A . C 3 HOH 111 510 510 HOH HOH A . C 3 HOH 112 511 511 HOH HOH A . C 3 HOH 113 512 512 HOH HOH A . C 3 HOH 114 513 513 HOH HOH A . C 3 HOH 115 514 514 HOH HOH A . C 3 HOH 116 515 515 HOH HOH A . C 3 HOH 117 516 516 HOH HOH A . C 3 HOH 118 517 517 HOH HOH A . C 3 HOH 119 518 518 HOH HOH A . C 3 HOH 120 519 519 HOH HOH A . C 3 HOH 121 520 520 HOH HOH A . C 3 HOH 122 521 521 HOH HOH A . C 3 HOH 123 522 522 HOH HOH A . C 3 HOH 124 523 523 HOH HOH A . C 3 HOH 125 524 524 HOH HOH A . C 3 HOH 126 525 525 HOH HOH A . C 3 HOH 127 526 526 HOH HOH A . C 3 HOH 128 527 527 HOH HOH A . C 3 HOH 129 528 528 HOH HOH A . C 3 HOH 130 529 529 HOH HOH A . C 3 HOH 131 530 530 HOH HOH A . C 3 HOH 132 531 531 HOH HOH A . C 3 HOH 133 532 532 HOH HOH A . C 3 HOH 134 533 533 HOH HOH A . C 3 HOH 135 534 534 HOH HOH A . C 3 HOH 136 535 535 HOH HOH A . C 3 HOH 137 536 536 HOH HOH A . C 3 HOH 138 537 537 HOH HOH A . C 3 HOH 139 538 538 HOH HOH A . C 3 HOH 140 539 539 HOH HOH A . C 3 HOH 141 540 540 HOH HOH A . C 3 HOH 142 541 541 HOH HOH A . C 3 HOH 143 542 542 HOH HOH A . C 3 HOH 144 543 543 HOH HOH A . C 3 HOH 145 544 544 HOH HOH A . C 3 HOH 146 545 545 HOH HOH A . C 3 HOH 147 546 546 HOH HOH A . C 3 HOH 148 547 547 HOH HOH A . C 3 HOH 149 548 548 HOH HOH A . C 3 HOH 150 549 549 HOH HOH A . C 3 HOH 151 550 550 HOH HOH A . C 3 HOH 152 551 551 HOH HOH A . C 3 HOH 153 552 552 HOH HOH A . C 3 HOH 154 553 553 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 74.1200000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-08-05 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-02-29 5 'Structure model' 1 4 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Non-polymer description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' Other 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_2 2 5 'Structure model' pdbx_database_status 3 5 'Structure model' pdbx_initial_refinement_model 4 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_database_status.process_site' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.851 ? 1 X-PLOR refinement 3.851 ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 X-PLOR phasing 3.851 ? 5 # _pdbx_entry_details.entry_id 1A4H _pdbx_entry_details.compound_details ;THIS IS THE TETRAGONAL CRYSTAL FORM OF HSP90. THE SIX RESIDUE HISTIDINE TAG USED FOR PURIFICATION WAS NOT REMOVED PRIOR TO CRYSTALLISATION. IT IS NOT SEEN IN THE ELECTRON DENSITY MAPS. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 443 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 493 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 SER _pdbx_validate_symm_contact.auth_seq_id_1 99 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 SER _pdbx_validate_symm_contact.auth_seq_id_2 99 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_555 _pdbx_validate_symm_contact.dist 1.72 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 2 ? ? 78.49 125.63 2 1 ASN A 21 ? ? -103.71 56.47 3 1 VAL A 23 ? ? -54.33 3.59 4 1 TYR A 24 ? ? -34.69 149.30 5 1 ASN A 26 ? ? -96.00 56.24 6 1 GLU A 59 ? ? 178.47 86.17 7 1 SER A 80 ? ? -102.40 45.43 8 1 PHE A 200 ? ? -107.67 57.68 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C14 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id GDM _pdbx_validate_chiral.auth_seq_id 300 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 22 ? CB ? A THR 32 CB 2 1 Y 1 A THR 22 ? OG1 ? A THR 32 OG1 3 1 Y 1 A THR 22 ? CG2 ? A THR 32 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -9 ? A MET 1 2 1 Y 1 A ARG -8 ? A ARG 2 3 1 Y 1 A GLY -7 ? A GLY 3 4 1 Y 1 A SER -6 ? A SER 4 5 1 Y 1 A HIS -5 ? A HIS 5 6 1 Y 1 A HIS -4 ? A HIS 6 7 1 Y 1 A HIS -3 ? A HIS 7 8 1 Y 1 A HIS -2 ? A HIS 8 9 1 Y 1 A HIS -1 ? A HIS 9 10 1 Y 1 A HIS 0 ? A HIS 10 11 1 Y 1 A LYS 215 ? A LYS 225 12 1 Y 1 A GLU 216 ? A GLU 226 13 1 Y 1 A VAL 217 ? A VAL 227 14 1 Y 1 A PRO 218 ? A PRO 228 15 1 Y 1 A ILE 219 ? A ILE 229 16 1 Y 1 A PRO 220 ? A PRO 230 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GELDANAMYCIN GDM 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AH6 _pdbx_initial_refinement_model.details 'PDB ENTRY 1AH6' #