HEADER DNA BINDING PROTEIN 16-FEB-98 1A5J TITLE CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 TITLE 2 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-MYB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN, REPEAT 2 AND REPEAT 3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HB101; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-3X KEYWDS DNA-BINDING PROTEIN, PROTOONCOGENE PRODUCT, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 32 AUTHOR P.B.MCINTOSH,M.D.CARR,U.WOLLBORN,T.A.FRENKIEL,J.FEENEY,J.E.MCCORMICK, AUTHOR 2 K.H.KLEMPNAUER REVDAT 4 22-MAY-24 1A5J 1 REMARK REVDAT 3 16-FEB-22 1A5J 1 KEYWDS REMARK REVDAT 2 24-FEB-09 1A5J 1 VERSN REVDAT 1 01-JUL-98 1A5J 0 JRNL AUTH P.B.MCINTOSH,T.A.FRENKIEL,U.WOLLBORN,J.E.MCCORMICK, JRNL AUTH 2 K.H.KLEMPNAUER,J.FEENEY,M.D.CARR JRNL TITL SOLUTION STRUCTURE OF THE B-MYB DNA-BINDING DOMAIN: A JRNL TITL 2 POSSIBLE ROLE FOR CONFORMATIONAL INSTABILITY OF THE PROTEIN JRNL TITL 3 IN DNA BINDING AND CONTROL OF GENE EXPRESSION. JRNL REF BIOCHEMISTRY V. 37 9619 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9657674 JRNL DOI 10.1021/BI972861Z REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.D.CARR,U.WOLLBORN,P.B.MCINTOSH,T.A.FRENKIEL,J.E.MCCORMICK, REMARK 1 AUTH 2 C.J.BAUER,K.H.KLEMPNAUER,J.FEENEY REMARK 1 TITL STRUCTURE OF THE B-MYB DNA-BINDING DOMAIN IN SOLUTION AND REMARK 1 TITL 2 EVIDENCE FOR MULTIPLE CONFORMATIONS IN THE REGION OF REMARK 1 TITL 3 REPEAT-2 INVOLVED IN DNA BINDING. IMPLICATIONS FOR REMARK 1 TITL 4 SEQUENCE-SPECIFIC DNA BINDING BY MYB PROTEINS REMARK 1 REF EUR.J.BIOCHEM. V. 235 721 1996 REMARK 1 REFN ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1A5J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170418. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DQF-COSY; TOCSY; NOESY; 2D REMARK 210 1H/13C HMQC; 2D F2 12C-FILTERED REMARK 210 TOCSY; 3D 1H/13C HMQC-NOESY; REMARK 210 HCCH-COSY; HCCH-TOCSY; 3D 1H/15N REMARK 210 NOESY-HSQC; NOESY-HMQC; HNHA; REMARK 210 HNHB; HMQC-NOESY-HMQC; ROESY- REMARK 210 HMQC; TOCSY-HMQC; 3D-1H/15N/13C REMARK 210 CBCANH; CBCA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 32 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO DISTANCE CONSTRAINT ORVAN DER REMARK 210 WAALS VIOLATIONS >0.5A,NO REMARK 210 DIHEDRAL ANGLE CONSTRAINT REMARK 210 VIOLATIONS >6 DEGREES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURES WERE DETERMINED USING DOUBLE AND TRIPLE REMARK 210 RESONANCE NMR SPECTROSCOPY ON 13C/15N AND 15N LABELED B-MYB. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 33 H LEU A 37 1.48 REMARK 500 O VAL A 22 H GLY A 26 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 2 71.79 65.11 REMARK 500 1 PRO A 3 -163.30 -75.05 REMARK 500 1 LYS A 7 20.07 -78.52 REMARK 500 1 GLU A 13 -75.62 -51.62 REMARK 500 1 THR A 27 55.38 71.62 REMARK 500 1 LYS A 43 -138.83 -80.83 REMARK 500 1 GLN A 44 66.09 35.55 REMARK 500 1 CYS A 45 -44.06 -166.27 REMARK 500 1 ARG A 46 -35.17 -36.79 REMARK 500 1 ARG A 48 -41.18 -174.65 REMARK 500 1 ASN A 51 75.62 -110.05 REMARK 500 1 HIS A 52 -63.78 -160.41 REMARK 500 1 LEU A 53 123.41 -39.93 REMARK 500 1 ASN A 54 65.45 178.23 REMARK 500 1 PRO A 55 -157.74 -74.95 REMARK 500 1 LYS A 58 35.40 -176.15 REMARK 500 1 LYS A 59 110.31 56.42 REMARK 500 1 SER A 60 -43.46 85.28 REMARK 500 1 SER A 61 -154.17 -58.27 REMARK 500 1 THR A 63 -158.30 -124.27 REMARK 500 1 GLU A 64 -82.04 -80.85 REMARK 500 1 LEU A 77 -73.23 -123.95 REMARK 500 1 THR A 92 -169.80 -107.20 REMARK 500 1 SER A 102 -77.22 -73.46 REMARK 500 1 LYS A 107 86.06 -64.49 REMARK 500 1 VAL A 108 -46.79 -155.99 REMARK 500 1 ASP A 109 33.52 -92.31 REMARK 500 2 LEU A 5 95.55 37.97 REMARK 500 2 VAL A 6 -144.05 -128.81 REMARK 500 2 LYS A 7 28.54 38.56 REMARK 500 2 PRO A 9 -168.89 -74.97 REMARK 500 2 LYS A 12 -32.11 -38.15 REMARK 500 2 ILE A 19 -72.60 -63.07 REMARK 500 2 LEU A 21 -77.07 -81.25 REMARK 500 2 THR A 27 -71.19 160.60 REMARK 500 2 LYS A 28 64.47 166.25 REMARK 500 2 LYS A 43 -51.38 -144.02 REMARK 500 2 CYS A 45 -65.10 -162.48 REMARK 500 2 ARG A 46 46.12 -82.91 REMARK 500 2 ASN A 51 48.77 -90.38 REMARK 500 2 HIS A 52 -66.85 -101.63 REMARK 500 2 LEU A 53 105.50 -40.39 REMARK 500 2 PRO A 55 -89.71 -75.00 REMARK 500 2 GLU A 56 165.53 54.22 REMARK 500 2 LYS A 58 92.15 88.78 REMARK 500 2 LYS A 59 -165.17 43.77 REMARK 500 2 SER A 61 -150.82 -172.14 REMARK 500 2 THR A 63 -156.82 -124.60 REMARK 500 2 GLU A 64 -81.59 -82.06 REMARK 500 2 ILE A 69 -70.95 -38.74 REMARK 500 REMARK 500 THIS ENTRY HAS 981 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1A5J A 3 110 UNP Q03237 MYBB_CHICK 79 186 SEQRES 1 A 110 GLY ILE PRO ASP LEU VAL LYS GLY PRO TRP THR LYS GLU SEQRES 2 A 110 GLU ASP GLN LYS VAL ILE GLU LEU VAL LYS LYS TYR GLY SEQRES 3 A 110 THR LYS GLN TRP THR LEU ILE ALA LYS HIS LEU LYS GLY SEQRES 4 A 110 ARG LEU GLY LYS GLN CYS ARG GLU ARG TRP HIS ASN HIS SEQRES 5 A 110 LEU ASN PRO GLU VAL LYS LYS SER SER TRP THR GLU GLU SEQRES 6 A 110 GLU ASP ARG ILE ILE PHE GLU ALA HIS LYS VAL LEU GLY SEQRES 7 A 110 ASN ARG TRP ALA GLU ILE ALA LYS LEU LEU PRO GLY ARG SEQRES 8 A 110 THR ASP ASN ALA VAL LYS ASN HIS TRP ASN SER THR ILE SEQRES 9 A 110 LYS ARG LYS VAL ASP THR HELIX 1 1 LYS A 12 TYR A 25 1 14 HELIX 2 2 TRP A 30 HIS A 36 1 7 HELIX 3 3 ARG A 46 TRP A 49 1 4 HELIX 4 4 GLU A 64 GLU A 72 1 9 HELIX 5 5 TRP A 81 LEU A 87 1 7 HELIX 6 6 ASP A 93 SER A 102 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1