data_1A5X # _entry.id 1A5X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1A5X pdb_00001a5x 10.2210/pdb1a5x/pdb WWPDB D_1000170432 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1A5X _pdbx_database_status.recvd_initial_deposition_date 1998-02-18 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lubkowski, J.' 1 'Yang, F.' 2 'Alexandratos, J.' 3 'Wlodawer, A.' 4 # _citation.id primary _citation.title 'Structure of the catalytic domain of avian sarcoma virus integrase with a bound HIV-1 integrase-targeted inhibitor.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 95 _citation.page_first 4831 _citation.page_last 4836 _citation.year 1998 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9560188 _citation.pdbx_database_id_DOI 10.1073/pnas.95.9.4831 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lubkowski, J.' 1 ? primary 'Yang, F.' 2 ? primary 'Alexandratos, J.' 3 ? primary 'Wlodawer, A.' 4 ? primary 'Zhao, H.' 5 ? primary 'Burke Jr., T.R.' 6 ? primary 'Neamati, N.' 7 ? primary 'Pommier, Y.' 8 ? primary 'Merkel, G.' 9 ? primary 'Skalka, A.M.' 10 ? # _cell.entry_id 1A5X _cell.length_a 66.443 _cell.length_b 66.443 _cell.length_c 81.282 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A5X _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man INTEGRASE 17398.922 1 2.7.7.49 ? 'CATALYTIC CORE DOMAIN' 'P03354 FRAGMENT OF POLYPROTEIN POL-RSVP' 2 non-polymer syn '4-ACETYLAMINO-5-HYDROXYNAPHTHALENE-2,7-DISULFONIC ACID' 361.348 1 ? ? ? ? 3 water nat water 18.015 169 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKST REWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL ; _entity_poly.pdbx_seq_one_letter_code_can ;PRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKST REWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTNL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ARG n 1 3 GLY n 1 4 LEU n 1 5 GLY n 1 6 PRO n 1 7 LEU n 1 8 GLN n 1 9 ILE n 1 10 TRP n 1 11 GLN n 1 12 THR n 1 13 ASP n 1 14 PHE n 1 15 THR n 1 16 LEU n 1 17 GLU n 1 18 PRO n 1 19 ARG n 1 20 MET n 1 21 ALA n 1 22 PRO n 1 23 ARG n 1 24 SER n 1 25 TRP n 1 26 LEU n 1 27 ALA n 1 28 VAL n 1 29 THR n 1 30 VAL n 1 31 ASP n 1 32 THR n 1 33 ALA n 1 34 SER n 1 35 SER n 1 36 ALA n 1 37 ILE n 1 38 VAL n 1 39 VAL n 1 40 THR n 1 41 GLN n 1 42 HIS n 1 43 GLY n 1 44 ARG n 1 45 VAL n 1 46 THR n 1 47 SER n 1 48 VAL n 1 49 ALA n 1 50 ALA n 1 51 GLN n 1 52 HIS n 1 53 HIS n 1 54 TRP n 1 55 ALA n 1 56 THR n 1 57 ALA n 1 58 ILE n 1 59 ALA n 1 60 VAL n 1 61 LEU n 1 62 GLY n 1 63 ARG n 1 64 PRO n 1 65 LYS n 1 66 ALA n 1 67 ILE n 1 68 LYS n 1 69 THR n 1 70 ASP n 1 71 ASN n 1 72 GLY n 1 73 SER n 1 74 CYS n 1 75 PHE n 1 76 THR n 1 77 SER n 1 78 LYS n 1 79 SER n 1 80 THR n 1 81 ARG n 1 82 GLU n 1 83 TRP n 1 84 LEU n 1 85 ALA n 1 86 ARG n 1 87 TRP n 1 88 GLY n 1 89 ILE n 1 90 ALA n 1 91 HIS n 1 92 THR n 1 93 THR n 1 94 GLY n 1 95 ILE n 1 96 PRO n 1 97 GLY n 1 98 ASN n 1 99 SER n 1 100 GLN n 1 101 GLY n 1 102 GLN n 1 103 ALA n 1 104 MET n 1 105 VAL n 1 106 GLU n 1 107 ARG n 1 108 ALA n 1 109 ASN n 1 110 ARG n 1 111 LEU n 1 112 LEU n 1 113 LYS n 1 114 ASP n 1 115 LYS n 1 116 ILE n 1 117 ARG n 1 118 VAL n 1 119 LEU n 1 120 ALA n 1 121 GLU n 1 122 GLY n 1 123 ASP n 1 124 GLY n 1 125 PHE n 1 126 MET n 1 127 LYS n 1 128 ARG n 1 129 ILE n 1 130 PRO n 1 131 THR n 1 132 SER n 1 133 LYS n 1 134 GLN n 1 135 GLY n 1 136 GLU n 1 137 LEU n 1 138 LEU n 1 139 ALA n 1 140 LYS n 1 141 ALA n 1 142 MET n 1 143 TYR n 1 144 ALA n 1 145 LEU n 1 146 ASN n 1 147 HIS n 1 148 PHE n 1 149 GLU n 1 150 ARG n 1 151 GLY n 1 152 GLU n 1 153 ASN n 1 154 THR n 1 155 LYS n 1 156 THR n 1 157 ASN n 1 158 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Alpharetrovirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Rous sarcoma virus' _entity_src_gen.gene_src_strain Schmidt-Ruppin _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rous sarcoma virus (strain Schmidt-Ruppin)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11889 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PRC23IN(52-207)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'SEE JRNL REFERENCE' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_RSVP _struct_ref.pdbx_db_accession P03354 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 624 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1A5X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 156 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P03354 _struct_ref_seq.db_align_beg 624 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 779 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 52 _struct_ref_seq.pdbx_auth_seq_align_end 207 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1A5X ALA A 50 ? UNP P03354 VAL 673 variant 101 1 1 1A5X LYS A 115 ? UNP P03354 ARG 738 variant 166 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 Y3 non-polymer . '4-ACETYLAMINO-5-HYDROXYNAPHTHALENE-2,7-DISULFONIC ACID' ? 'C12 H11 N O8 S2' 361.348 # _exptl.entry_id 1A5X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 38. _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '20% PEG 4000, 10% ISOPROPANOL, 0.1M HEPES, PH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MACSCIENCE _diffrn_detector.pdbx_collection_date 1997-08-17 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL SI(111)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR591' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1A5X _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.9 _reflns.number_obs 14942 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0580000 _reflns.pdbx_netI_over_sigmaI 16.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.72 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.3730000 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1A5X _refine.ls_number_reflns_obs 13681 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 100000. _refine.pdbx_data_cutoff_low_absF 0.1 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 1.9 _refine.ls_percent_reflns_obs 93.3 _refine.ls_R_factor_obs 0.1550000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1550000 _refine.ls_R_factor_R_free 0.2120000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10. _refine.ls_number_reflns_R_free 1351 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 30.26 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ;ATOMIC OCCUPANCIES OF DISORDERED ATOMS ARE SET TO 0.00 IN THE COORDINATES. ; _refine.pdbx_starting_model 'PDB ENTRY 1ASV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1130 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 169 _refine_hist.number_atoms_total 1322 _refine_hist.d_res_high 1.9 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.67 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 23.37 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.99 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 1.9 _refine_ls_shell.d_res_low 1.99 _refine_ls_shell.number_reflns_R_work 1326 _refine_ls_shell.R_factor_R_work 0.2112000 _refine_ls_shell.percent_reflns_obs 83.3 _refine_ls_shell.R_factor_R_free 0.2252000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 10. _refine_ls_shell.number_reflns_R_free 163 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX_FY.PRO TOPHCSDX_FY.PRO 'X-RAY DIFFRACTION' 2 PARAM_SIMPLE.INHIBITOR TOPH_SIMPLE.INHIBITOR 'X-RAY DIFFRACTION' 3 PARAM19.SOLV TOPH19.SOLV 'X-RAY DIFFRACTION' # _struct.entry_id 1A5X _struct.title 'ASV INTEGRASE CORE DOMAIN WITH HIV-1 INTEGRASE INHIBITOR Y3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1A5X _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, ENDONUCLEASE, HIV-1 INTEGRASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ;THE AUTHOR MAINTAINS THAT THE BIOLOGICAL UNIT IS NOT YET KNOWN. THE MINIMUM MULTIMER IS BELIEVED TO CONTAIN AT LEAST THE DIMER GENERATED BT THE TRANSFORMATION IN REMARK 350, SHOWN IN BOTH HIV-1 AND ASV INTEGRASE CORE DOMAIN STRUCTURES. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 18 ? MET A 20 ? PRO A 69 MET A 71 5 ? 3 HELX_P HELX_P2 2 SER A 47 ? LEU A 61 ? SER A 98 LEU A 112 1 ? 15 HELX_P HELX_P3 3 SER A 73 ? THR A 76 ? SER A 124 THR A 127 1 ? 4 HELX_P HELX_P4 4 LYS A 78 ? TRP A 87 ? LYS A 129 TRP A 138 1 ? 10 HELX_P HELX_P5 5 ALA A 103 ? ASP A 123 ? ALA A 154 ASP A 174 1 ? 21 HELX_P HELX_P6 6 THR A 131 ? ASN A 146 ? THR A 182 ASN A 197 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 21 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 72 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 22 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 73 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 10.90 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 37 ? HIS A 42 ? ILE A 88 HIS A 93 A 2 TRP A 25 ? ASP A 31 ? TRP A 76 ASP A 82 A 3 ILE A 9 ? LEU A 16 ? ILE A 60 LEU A 67 A 4 ALA A 66 ? LYS A 68 ? ALA A 117 LYS A 119 A 5 ALA A 90 ? THR A 92 ? ALA A 141 THR A 143 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 38 ? O VAL A 89 N THR A 29 ? N THR A 80 A 2 3 O LEU A 26 ? O LEU A 77 N THR A 15 ? N THR A 66 A 3 4 O TRP A 10 ? O TRP A 61 N ALA A 66 ? N ALA A 117 A 4 5 O ILE A 67 ? O ILE A 118 N ALA A 90 ? N ALA A 141 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details ACT Unknown ? ? ? ? 3 'ACTIVE SITE.' AC1 Software A Y3 1 ? 11 'BINDING SITE FOR RESIDUE Y3 A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 ACT 3 ASP A 13 ? ASP A 64 . ? 1_555 ? 2 ACT 3 ASP A 70 ? ASP A 121 . ? 1_555 ? 3 ACT 3 GLU A 106 ? GLU A 157 . ? 1_555 ? 4 AC1 11 GLN A 11 ? GLN A 62 . ? 1_555 ? 5 AC1 11 LYS A 68 ? LYS A 119 . ? 8_666 ? 6 AC1 11 LYS A 68 ? LYS A 119 . ? 1_555 ? 7 AC1 11 ILE A 95 ? ILE A 146 . ? 8_666 ? 8 AC1 11 GLN A 102 ? GLN A 153 . ? 8_666 ? 9 AC1 11 ALA A 103 ? ALA A 154 . ? 1_555 ? 10 AC1 11 MET A 104 ? MET A 155 . ? 1_555 ? 11 AC1 11 HOH C . ? HOH A 265 . ? 1_555 ? 12 AC1 11 HOH C . ? HOH A 299 . ? 8_666 ? 13 AC1 11 HOH C . ? HOH A 299 . ? 1_555 ? 14 AC1 11 HOH C . ? HOH A 333 . ? 8_666 ? # _database_PDB_matrix.entry_id 1A5X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1A5X _atom_sites.fract_transf_matrix[1][1] 0.015050 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015050 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012303 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 52 ? ? ? A . n A 1 2 ARG 2 53 ? ? ? A . n A 1 3 GLY 3 54 54 GLY GLY A . n A 1 4 LEU 4 55 55 LEU LEU A . n A 1 5 GLY 5 56 56 GLY GLY A . n A 1 6 PRO 6 57 57 PRO PRO A . n A 1 7 LEU 7 58 58 LEU LEU A . n A 1 8 GLN 8 59 59 GLN GLN A . n A 1 9 ILE 9 60 60 ILE ILE A . n A 1 10 TRP 10 61 61 TRP TRP A . n A 1 11 GLN 11 62 62 GLN GLN A . n A 1 12 THR 12 63 63 THR THR A . n A 1 13 ASP 13 64 64 ASP ASP A . n A 1 14 PHE 14 65 65 PHE PHE A . n A 1 15 THR 15 66 66 THR THR A . n A 1 16 LEU 16 67 67 LEU LEU A . n A 1 17 GLU 17 68 68 GLU GLU A . n A 1 18 PRO 18 69 69 PRO PRO A . n A 1 19 ARG 19 70 70 ARG ARG A . n A 1 20 MET 20 71 71 MET MET A . n A 1 21 ALA 21 72 72 ALA ALA A . n A 1 22 PRO 22 73 73 PRO PRO A . n A 1 23 ARG 23 74 74 ARG ARG A . n A 1 24 SER 24 75 75 SER SER A . n A 1 25 TRP 25 76 76 TRP TRP A . n A 1 26 LEU 26 77 77 LEU LEU A . n A 1 27 ALA 27 78 78 ALA ALA A . n A 1 28 VAL 28 79 79 VAL VAL A . n A 1 29 THR 29 80 80 THR THR A . n A 1 30 VAL 30 81 81 VAL VAL A . n A 1 31 ASP 31 82 82 ASP ASP A . n A 1 32 THR 32 83 83 THR THR A . n A 1 33 ALA 33 84 84 ALA ALA A . n A 1 34 SER 34 85 85 SER SER A . n A 1 35 SER 35 86 86 SER SER A . n A 1 36 ALA 36 87 87 ALA ALA A . n A 1 37 ILE 37 88 88 ILE ILE A . n A 1 38 VAL 38 89 89 VAL VAL A . n A 1 39 VAL 39 90 90 VAL VAL A . n A 1 40 THR 40 91 91 THR THR A . n A 1 41 GLN 41 92 92 GLN GLN A . n A 1 42 HIS 42 93 93 HIS HIS A . n A 1 43 GLY 43 94 94 GLY GLY A . n A 1 44 ARG 44 95 95 ARG ARG A . n A 1 45 VAL 45 96 96 VAL VAL A . n A 1 46 THR 46 97 97 THR THR A . n A 1 47 SER 47 98 98 SER SER A . n A 1 48 VAL 48 99 99 VAL VAL A . n A 1 49 ALA 49 100 100 ALA ALA A . n A 1 50 ALA 50 101 101 ALA ALA A . n A 1 51 GLN 51 102 102 GLN GLN A . n A 1 52 HIS 52 103 103 HIS HIS A . n A 1 53 HIS 53 104 104 HIS HIS A . n A 1 54 TRP 54 105 105 TRP TRP A . n A 1 55 ALA 55 106 106 ALA ALA A . n A 1 56 THR 56 107 107 THR THR A . n A 1 57 ALA 57 108 108 ALA ALA A . n A 1 58 ILE 58 109 109 ILE ILE A . n A 1 59 ALA 59 110 110 ALA ALA A . n A 1 60 VAL 60 111 111 VAL VAL A . n A 1 61 LEU 61 112 112 LEU LEU A . n A 1 62 GLY 62 113 113 GLY GLY A . n A 1 63 ARG 63 114 114 ARG ARG A . n A 1 64 PRO 64 115 115 PRO PRO A . n A 1 65 LYS 65 116 116 LYS LYS A . n A 1 66 ALA 66 117 117 ALA ALA A . n A 1 67 ILE 67 118 118 ILE ILE A . n A 1 68 LYS 68 119 119 LYS LYS A . n A 1 69 THR 69 120 120 THR THR A . n A 1 70 ASP 70 121 121 ASP ASP A . n A 1 71 ASN 71 122 122 ASN ASN A . n A 1 72 GLY 72 123 123 GLY GLY A . n A 1 73 SER 73 124 124 SER SER A . n A 1 74 CYS 74 125 125 CYS CYS A . n A 1 75 PHE 75 126 126 PHE PHE A . n A 1 76 THR 76 127 127 THR THR A . n A 1 77 SER 77 128 128 SER SER A . n A 1 78 LYS 78 129 129 LYS LYS A . n A 1 79 SER 79 130 130 SER SER A . n A 1 80 THR 80 131 131 THR THR A . n A 1 81 ARG 81 132 132 ARG ARG A . n A 1 82 GLU 82 133 133 GLU GLU A . n A 1 83 TRP 83 134 134 TRP TRP A . n A 1 84 LEU 84 135 135 LEU LEU A . n A 1 85 ALA 85 136 136 ALA ALA A . n A 1 86 ARG 86 137 137 ARG ARG A . n A 1 87 TRP 87 138 138 TRP TRP A . n A 1 88 GLY 88 139 139 GLY GLY A . n A 1 89 ILE 89 140 140 ILE ILE A . n A 1 90 ALA 90 141 141 ALA ALA A . n A 1 91 HIS 91 142 142 HIS HIS A . n A 1 92 THR 92 143 143 THR THR A . n A 1 93 THR 93 144 144 THR THR A . n A 1 94 GLY 94 145 145 GLY GLY A . n A 1 95 ILE 95 146 146 ILE ILE A . n A 1 96 PRO 96 147 147 PRO PRO A . n A 1 97 GLY 97 148 148 GLY GLY A . n A 1 98 ASN 98 149 149 ASN ASN A . n A 1 99 SER 99 150 150 SER SER A . n A 1 100 GLN 100 151 151 GLN GLN A . n A 1 101 GLY 101 152 152 GLY GLY A . n A 1 102 GLN 102 153 153 GLN GLN A . n A 1 103 ALA 103 154 154 ALA ALA A . n A 1 104 MET 104 155 155 MET MET A . n A 1 105 VAL 105 156 156 VAL VAL A . n A 1 106 GLU 106 157 157 GLU GLU A . n A 1 107 ARG 107 158 158 ARG ARG A . n A 1 108 ALA 108 159 159 ALA ALA A . n A 1 109 ASN 109 160 160 ASN ASN A . n A 1 110 ARG 110 161 161 ARG ARG A . n A 1 111 LEU 111 162 162 LEU LEU A . n A 1 112 LEU 112 163 163 LEU LEU A . n A 1 113 LYS 113 164 164 LYS LYS A . n A 1 114 ASP 114 165 165 ASP ASP A . n A 1 115 LYS 115 166 166 LYS LYS A . n A 1 116 ILE 116 167 167 ILE ILE A . n A 1 117 ARG 117 168 168 ARG ARG A . n A 1 118 VAL 118 169 169 VAL VAL A . n A 1 119 LEU 119 170 170 LEU LEU A . n A 1 120 ALA 120 171 171 ALA ALA A . n A 1 121 GLU 121 172 172 GLU GLU A . n A 1 122 GLY 122 173 173 GLY GLY A . n A 1 123 ASP 123 174 174 ASP ASP A . n A 1 124 GLY 124 175 175 GLY GLY A . n A 1 125 PHE 125 176 176 PHE PHE A . n A 1 126 MET 126 177 177 MET MET A . n A 1 127 LYS 127 178 178 LYS LYS A . n A 1 128 ARG 128 179 179 ARG ARG A . n A 1 129 ILE 129 180 180 ILE ILE A . n A 1 130 PRO 130 181 181 PRO PRO A . n A 1 131 THR 131 182 182 THR THR A . n A 1 132 SER 132 183 183 SER SER A . n A 1 133 LYS 133 184 184 LYS LYS A . n A 1 134 GLN 134 185 185 GLN GLN A . n A 1 135 GLY 135 186 186 GLY GLY A . n A 1 136 GLU 136 187 187 GLU GLU A . n A 1 137 LEU 137 188 188 LEU LEU A . n A 1 138 LEU 138 189 189 LEU LEU A . n A 1 139 ALA 139 190 190 ALA ALA A . n A 1 140 LYS 140 191 191 LYS LYS A . n A 1 141 ALA 141 192 192 ALA ALA A . n A 1 142 MET 142 193 193 MET MET A . n A 1 143 TYR 143 194 194 TYR TYR A . n A 1 144 ALA 144 195 195 ALA ALA A . n A 1 145 LEU 145 196 196 LEU LEU A . n A 1 146 ASN 146 197 197 ASN ASN A . n A 1 147 HIS 147 198 198 HIS HIS A . n A 1 148 PHE 148 199 199 PHE PHE A . n A 1 149 GLU 149 200 ? ? ? A . n A 1 150 ARG 150 201 ? ? ? A . n A 1 151 GLY 151 202 ? ? ? A . n A 1 152 GLU 152 203 ? ? ? A . n A 1 153 ASN 153 204 ? ? ? A . n A 1 154 THR 154 205 ? ? ? A . n A 1 155 LYS 155 206 ? ? ? A . n A 1 156 THR 156 207 ? ? ? A . n A 1 157 ASN 157 208 ? ? ? A . n A 1 158 LEU 158 209 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y3 1 1 1 Y3 Y3 A . C 3 HOH 1 210 2 HOH HOH A . C 3 HOH 2 211 3 HOH HOH A . C 3 HOH 3 212 4 HOH HOH A . C 3 HOH 4 213 5 HOH HOH A . C 3 HOH 5 214 6 HOH HOH A . C 3 HOH 6 215 7 HOH HOH A . C 3 HOH 7 216 8 HOH HOH A . C 3 HOH 8 217 9 HOH HOH A . C 3 HOH 9 218 10 HOH HOH A . C 3 HOH 10 219 11 HOH HOH A . C 3 HOH 11 220 12 HOH HOH A . C 3 HOH 12 221 13 HOH HOH A . C 3 HOH 13 222 14 HOH HOH A . C 3 HOH 14 223 15 HOH HOH A . C 3 HOH 15 224 16 HOH HOH A . C 3 HOH 16 225 17 HOH HOH A . C 3 HOH 17 226 18 HOH HOH A . C 3 HOH 18 227 19 HOH HOH A . C 3 HOH 19 228 20 HOH HOH A . C 3 HOH 20 229 21 HOH HOH A . C 3 HOH 21 230 22 HOH HOH A . C 3 HOH 22 231 23 HOH HOH A . C 3 HOH 23 232 24 HOH HOH A . C 3 HOH 24 233 25 HOH HOH A . C 3 HOH 25 234 26 HOH HOH A . C 3 HOH 26 235 27 HOH HOH A . C 3 HOH 27 236 28 HOH HOH A . C 3 HOH 28 237 29 HOH HOH A . C 3 HOH 29 238 30 HOH HOH A . C 3 HOH 30 239 31 HOH HOH A . C 3 HOH 31 240 32 HOH HOH A . C 3 HOH 32 241 33 HOH HOH A . C 3 HOH 33 242 34 HOH HOH A . C 3 HOH 34 243 35 HOH HOH A . C 3 HOH 35 244 36 HOH HOH A . C 3 HOH 36 245 37 HOH HOH A . C 3 HOH 37 246 38 HOH HOH A . C 3 HOH 38 247 39 HOH HOH A . C 3 HOH 39 248 40 HOH HOH A . C 3 HOH 40 249 41 HOH HOH A . C 3 HOH 41 250 42 HOH HOH A . C 3 HOH 42 251 43 HOH HOH A . C 3 HOH 43 252 44 HOH HOH A . C 3 HOH 44 253 45 HOH HOH A . C 3 HOH 45 254 46 HOH HOH A . C 3 HOH 46 255 47 HOH HOH A . C 3 HOH 47 256 48 HOH HOH A . C 3 HOH 48 257 49 HOH HOH A . C 3 HOH 49 258 50 HOH HOH A . C 3 HOH 50 259 51 HOH HOH A . C 3 HOH 51 260 52 HOH HOH A . C 3 HOH 52 261 53 HOH HOH A . C 3 HOH 53 262 54 HOH HOH A . C 3 HOH 54 263 55 HOH HOH A . C 3 HOH 55 264 56 HOH HOH A . C 3 HOH 56 265 57 HOH HOH A . C 3 HOH 57 266 58 HOH HOH A . C 3 HOH 58 267 59 HOH HOH A . C 3 HOH 59 268 60 HOH HOH A . C 3 HOH 60 269 61 HOH HOH A . C 3 HOH 61 270 62 HOH HOH A . C 3 HOH 62 271 63 HOH HOH A . C 3 HOH 63 272 64 HOH HOH A . C 3 HOH 64 273 65 HOH HOH A . C 3 HOH 65 274 66 HOH HOH A . C 3 HOH 66 275 67 HOH HOH A . C 3 HOH 67 276 68 HOH HOH A . C 3 HOH 68 277 69 HOH HOH A . C 3 HOH 69 278 70 HOH HOH A . C 3 HOH 70 279 71 HOH HOH A . C 3 HOH 71 280 72 HOH HOH A . C 3 HOH 72 281 73 HOH HOH A . C 3 HOH 73 282 74 HOH HOH A . C 3 HOH 74 283 75 HOH HOH A . C 3 HOH 75 284 76 HOH HOH A . C 3 HOH 76 285 77 HOH HOH A . C 3 HOH 77 286 78 HOH HOH A . C 3 HOH 78 287 79 HOH HOH A . C 3 HOH 79 288 80 HOH HOH A . C 3 HOH 80 289 81 HOH HOH A . C 3 HOH 81 290 82 HOH HOH A . C 3 HOH 82 291 83 HOH HOH A . C 3 HOH 83 292 84 HOH HOH A . C 3 HOH 84 293 85 HOH HOH A . C 3 HOH 85 294 86 HOH HOH A . C 3 HOH 86 295 87 HOH HOH A . C 3 HOH 87 296 88 HOH HOH A . C 3 HOH 88 297 89 HOH HOH A . C 3 HOH 89 298 90 HOH HOH A . C 3 HOH 90 299 91 HOH HOH A . C 3 HOH 91 300 92 HOH HOH A . C 3 HOH 92 301 93 HOH HOH A . C 3 HOH 93 302 94 HOH HOH A . C 3 HOH 94 303 95 HOH HOH A . C 3 HOH 95 304 96 HOH HOH A . C 3 HOH 96 305 97 HOH HOH A . C 3 HOH 97 306 98 HOH HOH A . C 3 HOH 98 307 99 HOH HOH A . C 3 HOH 99 308 100 HOH HOH A . C 3 HOH 100 309 101 HOH HOH A . C 3 HOH 101 310 102 HOH HOH A . C 3 HOH 102 311 103 HOH HOH A . C 3 HOH 103 312 104 HOH HOH A . C 3 HOH 104 313 105 HOH HOH A . C 3 HOH 105 314 106 HOH HOH A . C 3 HOH 106 315 107 HOH HOH A . C 3 HOH 107 316 108 HOH HOH A . C 3 HOH 108 317 109 HOH HOH A . C 3 HOH 109 318 110 HOH HOH A . C 3 HOH 110 319 111 HOH HOH A . C 3 HOH 111 320 112 HOH HOH A . C 3 HOH 112 321 113 HOH HOH A . C 3 HOH 113 322 114 HOH HOH A . C 3 HOH 114 323 115 HOH HOH A . C 3 HOH 115 324 116 HOH HOH A . C 3 HOH 116 325 117 HOH HOH A . C 3 HOH 117 326 118 HOH HOH A . C 3 HOH 118 327 119 HOH HOH A . C 3 HOH 119 328 120 HOH HOH A . C 3 HOH 120 329 121 HOH HOH A . C 3 HOH 121 330 122 HOH HOH A . C 3 HOH 122 331 123 HOH HOH A . C 3 HOH 123 332 124 HOH HOH A . C 3 HOH 124 333 125 HOH HOH A . C 3 HOH 125 334 126 HOH HOH A . C 3 HOH 126 335 127 HOH HOH A . C 3 HOH 127 336 128 HOH HOH A . C 3 HOH 128 337 129 HOH HOH A . C 3 HOH 129 338 130 HOH HOH A . C 3 HOH 130 339 131 HOH HOH A . C 3 HOH 131 340 132 HOH HOH A . C 3 HOH 132 341 133 HOH HOH A . C 3 HOH 133 342 134 HOH HOH A . C 3 HOH 134 343 135 HOH HOH A . C 3 HOH 135 344 136 HOH HOH A . C 3 HOH 136 345 137 HOH HOH A . C 3 HOH 137 346 138 HOH HOH A . C 3 HOH 138 347 139 HOH HOH A . C 3 HOH 139 348 140 HOH HOH A . C 3 HOH 140 349 141 HOH HOH A . C 3 HOH 141 350 142 HOH HOH A . C 3 HOH 142 351 143 HOH HOH A . C 3 HOH 143 352 144 HOH HOH A . C 3 HOH 144 353 145 HOH HOH A . C 3 HOH 145 354 146 HOH HOH A . C 3 HOH 146 355 147 HOH HOH A . C 3 HOH 147 356 148 HOH HOH A . C 3 HOH 148 357 149 HOH HOH A . C 3 HOH 149 358 150 HOH HOH A . C 3 HOH 150 359 151 HOH HOH A . C 3 HOH 151 360 152 HOH HOH A . C 3 HOH 152 361 153 HOH HOH A . C 3 HOH 153 362 154 HOH HOH A . C 3 HOH 154 363 155 HOH HOH A . C 3 HOH 155 364 156 HOH HOH A . C 3 HOH 156 365 157 HOH HOH A . C 3 HOH 157 366 158 HOH HOH A . C 3 HOH 158 367 159 HOH HOH A . C 3 HOH 159 368 160 HOH HOH A . C 3 HOH 160 369 161 HOH HOH A . C 3 HOH 161 370 162 HOH HOH A . C 3 HOH 162 371 163 HOH HOH A . C 3 HOH 163 372 164 HOH HOH A . C 3 HOH 164 373 165 HOH HOH A . C 3 HOH 165 374 166 HOH HOH A . C 3 HOH 166 375 167 HOH HOH A . C 3 HOH 167 376 168 HOH HOH A . C 3 HOH 168 377 169 HOH HOH A . C 3 HOH 169 378 170 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0.0000000000 -1.0000000000 0.0000000000 66.4430000000 -1.0000000000 0.0000000000 0.0000000000 66.4430000000 0.0000000000 0.0000000000 -1.0000000000 121.9230000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-05-27 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_initial_refinement_model 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 X-PLOR phasing 3.1 ? 5 # _pdbx_entry_details.entry_id 1A5X _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE APPARENT DISCREPANCY BETWEEN THE SEQUENCE PRESENTED HERE AND THE "POL_RSVP" SEQUENCE IS A RESULT OF VIRAL STRAIN VARIATION. THE STRAIN USED FOR THIS WORK, "ROUS SARCOMA VIRUS SCHMIDT-RUPPIN B", COMPARED TO "POL-RSVP" SEQUENCE DIFFERS AT TWO POSITIONS WITH THE CONSERVATIVE AMINO ACID RESIDUE DIFFERENCES NOTED (VAL -> ALA 101 AND ARG -> LYS 166). ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 121 ? ? -79.34 -161.46 2 1 PRO A 147 ? ? -73.65 -166.53 3 1 GLN A 153 ? ? -63.56 80.82 4 1 LYS A 178 ? ? -119.13 -123.90 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 52 ? A PRO 1 2 1 Y 1 A ARG 53 ? A ARG 2 3 1 Y 0 A GLY 54 ? A GLY 3 4 1 Y 0 A PRO 147 ? A PRO 96 5 1 Y 0 A GLY 148 ? A GLY 97 6 1 Y 0 A ASN 149 ? A ASN 98 7 1 Y 0 A SER 150 ? A SER 99 8 1 Y 0 A GLN 151 ? A GLN 100 9 1 Y 0 A GLY 152 ? A GLY 101 10 1 Y 1 A GLU 200 ? A GLU 149 11 1 Y 1 A ARG 201 ? A ARG 150 12 1 Y 1 A GLY 202 ? A GLY 151 13 1 Y 1 A GLU 203 ? A GLU 152 14 1 Y 1 A ASN 204 ? A ASN 153 15 1 Y 1 A THR 205 ? A THR 154 16 1 Y 1 A LYS 206 ? A LYS 155 17 1 Y 1 A THR 207 ? A THR 156 18 1 Y 1 A ASN 208 ? A ASN 157 19 1 Y 1 A LEU 209 ? A LEU 158 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-ACETYLAMINO-5-HYDROXYNAPHTHALENE-2,7-DISULFONIC ACID' Y3 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ASV _pdbx_initial_refinement_model.details 'PDB ENTRY 1ASV' #