HEADER OXIDOREDUCTASE 18-FEB-98 1A5Z TITLE LACTATE DEHYDROGENASE FROM THERMOTOGA MARITIMA (TMLDH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIUM KEYWDS OXIDOREDUCTASE, GLYCOLYSIS, HYPERTHERMOPHILES, THERMOTOGA MARITIMA, KEYWDS 2 PROTEIN STABILITY EXPDTA X-RAY DIFFRACTION AUTHOR G.AUERBACH,R.OSTENDORP,L.PRADE,I.KORNDOERFER,T.DAMS,R.HUBER, AUTHOR 2 R.JAENICKE REVDAT 5 23-OCT-24 1A5Z 1 REMARK HETSYN REVDAT 4 29-JUL-20 1A5Z 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 13-JUL-11 1A5Z 1 VERSN REVDAT 2 24-FEB-09 1A5Z 1 VERSN REVDAT 1 23-MAR-99 1A5Z 0 JRNL AUTH G.AUERBACH,R.OSTENDORP,L.PRADE,I.KORNDORFER,T.DAMS,R.HUBER, JRNL AUTH 2 R.JAENICKE JRNL TITL LACTATE DEHYDROGENASE FROM THE HYPERTHERMOPHILIC BACTERIUM JRNL TITL 2 THERMOTOGA MARITIMA: THE CRYSTAL STRUCTURE AT 2.1 A JRNL TITL 3 RESOLUTION REVEALS STRATEGIES FOR INTRINSIC PROTEIN JRNL TITL 4 STABILIZATION. JRNL REF STRUCTURE V. 6 769 1998 JRNL REFN ISSN 0969-2126 JRNL PMID 9655830 JRNL DOI 10.1016/S0969-2126(98)00078-1 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.OSTENDORP,G.AUERBACH,R.JAENICKE REMARK 1 TITL EXTREMELY THERMOSTABLE L(+)-LACTATE DEHYDROGENASE FROM REMARK 1 TITL 2 THERMOTOGA MARITIMA: CLONING, CHARACTERIZATION, AND REMARK 1 TITL 3 CRYSTALLIZATION OF THE RECOMBINANT ENZYME IN ITS TETRAMERIC REMARK 1 TITL 4 AND OCTAMERIC STATE REMARK 1 REF PROTEIN SCI. V. 5 862 1996 REMARK 1 REFN ISSN 0961-8368 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 30205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2403 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 344 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.910 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1A5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30205 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.8 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.74000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 52.74000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.85000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.92500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.74000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 140.77500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.74000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 140.77500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.74000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.92500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 52.74000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 52.74000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.85000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 52.74000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 52.74000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.85000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 52.74000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 140.77500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 52.74000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 46.92500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.74000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 46.92500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 52.74000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 140.77500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.74000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 52.74000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 93.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 22730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -183.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 52.74000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -52.74000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 93.85000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 210.96000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 105.48000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 158.22000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 158.22000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 93.85000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 334 REMARK 465 HIS A 335 REMARK 465 GLN A 336 REMARK 465 ASN A 337 REMARK 465 THR A 338 REMARK 465 SER A 339 REMARK 465 GLY A 340 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 PRO A 105 REMARK 475 ASN A 333 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 58 NE CZ NH1 NH2 REMARK 480 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 102 CG CD OE1 NE2 REMARK 480 GLN A 111 CD OE1 NE2 REMARK 480 ARG A 118 CZ NH1 NH2 REMARK 480 ARG A 158 NH2 REMARK 480 ARG A 185 NE CZ NH1 NH2 REMARK 480 GLN A 210B CG CD OE1 NE2 REMARK 480 GLN A 217 CG CD OE1 NE2 REMARK 480 LYS A 218 CG CD REMARK 480 ASP A 277 OD1 OD2 REMARK 480 GLU A 304 OE1 OE2 REMARK 480 GLU A 309 CD OE1 REMARK 480 GLU A 331 CD OE1 OE2 REMARK 480 GLU A 332 CA C O CB CG CD OE1 REMARK 480 GLU A 332 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND1 HIS A 188 C3 FBP A 353 10765 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 215 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 29 45.02 -96.74 REMARK 500 GLU A 107 132.11 -37.28 REMARK 500 ASP A 220 162.58 173.82 REMARK 500 HIS A 247 -33.70 -154.76 REMARK 500 ASP A 277 106.62 -177.09 REMARK 500 GLU A 299 -75.10 -120.84 REMARK 500 ASN A 308 -176.69 -67.83 REMARK 500 GLU A 332 11.91 -157.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 1 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 230 OE2 REMARK 620 2 GLU A 238 OE1 71.1 REMARK 620 3 GLU A 238 OE2 85.8 46.6 REMARK 620 4 GLU A 241 OE1 139.9 85.0 100.8 REMARK 620 5 GLU A 241 OE2 163.1 98.3 77.5 47.9 REMARK 620 6 HOH A 537 O 90.8 116.1 162.4 71.1 105.8 REMARK 620 7 HOH A 613 O 105.0 139.3 93.3 114.0 74.2 104.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 2 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 259 OE2 REMARK 620 2 GLU A 265 OE2 114.1 REMARK 620 3 GLU A 265 OE1 109.8 46.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 3 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 168 OD1 REMARK 620 2 ASP A 168 OD2 53.1 REMARK 620 3 HOH A 461 O 96.7 104.1 REMARK 620 4 HOH A 612 O 84.9 135.8 92.6 REMARK 620 5 HOH A 620 O 144.7 94.5 76.5 129.4 REMARK 620 N 1 2 3 4 DBREF 1A5Z A 22 340 UNP P16115 LDH_THEMA 1 319 SEQADV 1A5Z VAL A 215 UNP P16115 ILE 196 CONFLICT SEQRES 1 A 319 MET LYS ILE GLY ILE VAL GLY LEU GLY ARG VAL GLY SER SEQRES 2 A 319 SER THR ALA PHE ALA LEU LEU MET LYS GLY PHE ALA ARG SEQRES 3 A 319 GLU MET VAL LEU ILE ASP VAL ASP LYS LYS ARG ALA GLU SEQRES 4 A 319 GLY ASP ALA LEU ASP LEU ILE HIS GLY THR PRO PHE THR SEQRES 5 A 319 ARG ARG ALA ASN ILE TYR ALA GLY ASP TYR ALA ASP LEU SEQRES 6 A 319 LYS GLY SER ASP VAL VAL ILE VAL ALA ALA GLY VAL PRO SEQRES 7 A 319 GLN LYS PRO GLY GLU THR ARG LEU GLN LEU LEU GLY ARG SEQRES 8 A 319 ASN ALA ARG VAL MET LYS GLU ILE ALA ARG ASN VAL SER SEQRES 9 A 319 LYS TYR ALA PRO ASP SER ILE VAL ILE VAL VAL THR ASN SEQRES 10 A 319 PRO VAL ASP VAL LEU THR TYR PHE PHE LEU LYS GLU SER SEQRES 11 A 319 GLY MET ASP PRO ARG LYS VAL PHE GLY SER GLY THR VAL SEQRES 12 A 319 LEU ASP THR ALA ARG LEU ARG THR LEU ILE ALA GLN HIS SEQRES 13 A 319 CYS GLY PHE SER PRO ARG SER VAL HIS VAL TYR VAL ILE SEQRES 14 A 319 GLY GLU HIS GLY ASP SER GLU VAL PRO VAL TRP SER GLY SEQRES 15 A 319 ALA MET ILE GLY GLY ILE PRO LEU GLN ASN MET CYS GLN SEQRES 16 A 319 VAL CYS GLN LYS CYS ASP SER LYS ILE LEU GLU ASN PHE SEQRES 17 A 319 ALA GLU LYS THR LYS ARG ALA ALA TYR GLU ILE ILE GLU SEQRES 18 A 319 ARG LYS GLY ALA THR HIS TYR ALA ILE ALA LEU ALA VAL SEQRES 19 A 319 ALA ASP ILE VAL GLU SER ILE PHE PHE ASP GLU LYS ARG SEQRES 20 A 319 VAL LEU THR LEU SER VAL TYR LEU GLU ASP TYR LEU GLY SEQRES 21 A 319 VAL LYS ASP LEU CYS ILE SER VAL PRO VAL THR LEU GLY SEQRES 22 A 319 LYS HIS GLY VAL GLU ARG ILE LEU GLU LEU ASN LEU ASN SEQRES 23 A 319 GLU GLU GLU LEU GLU ALA PHE ARG LYS SER ALA SER ILE SEQRES 24 A 319 LEU LYS ASN ALA ILE ASN GLU ILE THR ALA GLU GLU ASN SEQRES 25 A 319 LYS HIS GLN ASN THR SER GLY HET FBP A 353 20 HET FBP A 354 20 HET CD A 1 1 HET CD A 2 1 HET CD A 3 1 HET OXM A 355 6 HET NAD A 352 44 HETNAM FBP 1,6-DI-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE HETNAM CD CADMIUM ION HETNAM OXM OXAMIC ACID HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETSYN FBP BETA-FRUCTOSE-1,6-DIPHOSPHATE; FRUCTOSE-1,6- HETSYN 2 FBP BISPHOSPHATE; 1,6-DI-O-PHOSPHONO-BETA-D-FRUCTOSE; 1,6- HETSYN 3 FBP DI-O-PHOSPHONO-D-FRUCTOSE; 1,6-DI-O-PHOSPHONO-FRUCTOSE FORMUL 2 FBP 2(C6 H14 O12 P2) FORMUL 4 CD 3(CD 2+) FORMUL 7 OXM C2 H3 N O3 FORMUL 8 NAD C21 H27 N7 O14 P2 FORMUL 9 HOH *344(H2 O) HELIX 1 1 ARG A 31 LYS A 43 1 13 HELIX 2 2 LYS A 56 PHE A 72 1 17 HELIX 3 3 TYR A 85 LEU A 88 5 4 HELIX 4 4 ARG A 109 TYR A 130 1 22 HELIX 5 5 VAL A 142 SER A 153 1 12 HELIX 6 6 VAL A 166 CYS A 180 1 15 HELIX 7 7 PRO A 184 SER A 186 5 3 HELIX 8 8 TRP A 203 GLY A 205 5 3 HELIX 9 9 LEU A 210A GLN A 214 1 6 HELIX 10 10 SER A 221 LYS A 243 1 22 HELIX 11 11 TYR A 248 PHE A 262 1 15 HELIX 12 12 GLU A 309 ALA A 330B 1 23 SHEET 1 A 6 VAL A 160 GLY A 162 0 SHEET 2 A 6 ILE A 134 VAL A 137 1 N VAL A 135 O PHE A 161 SHEET 3 A 6 VAL A 93 VAL A 96 1 N VAL A 94 O ILE A 134 SHEET 4 A 6 LYS A 23 VAL A 27 1 N GLY A 25 O VAL A 93 SHEET 5 A 6 GLU A 48 ILE A 52 1 N GLU A 48 O ILE A 24 SHEET 6 A 6 ASN A 77 ALA A 80 1 N ASN A 77 O MET A 49 SHEET 1 B 2 ARG A 267 LEU A 275 0 SHEET 2 B 2 LEU A 285 LEU A 293 -1 N LEU A 293 O ARG A 267 SSBOND 1 CYS A 180 CYS A 216 1555 1555 2.60 SSBOND 2 CYS A 213 CYS A 219 1555 1555 2.32 LINK CD CD A 1 OE2 GLU A 230 1555 5655 1.82 LINK CD CD A 1 OE1 GLU A 238 1555 1555 2.99 LINK CD CD A 1 OE2 GLU A 238 1555 1555 2.08 LINK CD CD A 1 OE1 GLU A 241 1555 1555 2.81 LINK CD CD A 1 OE2 GLU A 241 1555 1555 2.61 LINK CD CD A 1 O HOH A 537 1555 5655 1.63 LINK CD CD A 1 O HOH A 613 1555 5655 1.64 LINK CD CD A 2 OE2 GLU A 259 1555 1555 2.86 LINK CD CD A 2 OE2 GLU A 265 1555 1555 2.33 LINK CD CD A 2 OE1 GLU A 265 1555 1555 3.00 LINK CD CD A 3 OD1 ASP A 168 1555 1555 2.18 LINK CD CD A 3 OD2 ASP A 168 1555 1555 2.60 LINK CD CD A 3 O HOH A 461 1555 7545 1.76 LINK CD CD A 3 O HOH A 612 1555 7545 1.65 LINK CD CD A 3 O HOH A 620 1555 1555 2.66 CISPEP 1 ASN A 140 PRO A 141 0 0.21 CRYST1 105.480 105.480 187.700 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009480 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005328 0.00000