data_1A6A # _entry.id 1A6A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1A6A pdb_00001a6a 10.2210/pdb1a6a/pdb WWPDB D_1000170445 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1A6A _pdbx_database_status.recvd_initial_deposition_date 1998-02-22 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ghosh, P.' 1 'Amaya, M.' 2 'Mellins, E.' 3 'Wiley, D.C.' 4 # _citation.id primary _citation.title 'The structure of an intermediate in class II MHC maturation: CLIP bound to HLA-DR3.' _citation.journal_abbrev Nature _citation.journal_volume 378 _citation.page_first 457 _citation.page_last 462 _citation.year 1995 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7477400 _citation.pdbx_database_id_DOI 10.1038/378457a0 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ghosh, P.' 1 ? primary 'Amaya, M.' 2 ? primary 'Mellins, E.' 3 ? primary 'Wiley, D.C.' 4 ? # _cell.entry_id 1A6A _cell.length_a 78.450 _cell.length_b 78.450 _cell.length_c 159.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A6A _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'HLA class II histocompatibility antigen, DR alpha chain' 20469.172 1 ? ? ? ? 2 polymer nat 'HLA class II histocompatibility antigen, DR-1 beta chain' 21935.385 1 ? ? ? ? 3 polymer nat 'HLA class II histocompatibility antigen, gamma chain' 1676.118 1 ? ? 'CLIP FRAGMENT 87 - 101 OF INVARIANT CHAIN' ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 5 water nat water 18.015 22 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;HVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITN VPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCR VEHWGLDEPLLKHWEF ; ;HVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITN VPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCR VEHWGLDEPLLKHWEF ; A ? 2 'polypeptide(L)' no no ;PRFLEYSTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYG VVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETV PRSGEVYTCQVEHPSVTSPLTVEWRAR ; ;PRFLEYSTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYG VVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETV PRSGEVYTCQVEHPSVTSPLTVEWRAR ; B ? 3 'polypeptide(L)' no no PVSKMRMATPLLMQA PVSKMRMATPLLMQA C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 VAL n 1 3 ILE n 1 4 ILE n 1 5 GLN n 1 6 ALA n 1 7 GLU n 1 8 PHE n 1 9 TYR n 1 10 LEU n 1 11 ASN n 1 12 PRO n 1 13 ASP n 1 14 GLN n 1 15 SER n 1 16 GLY n 1 17 GLU n 1 18 PHE n 1 19 MET n 1 20 PHE n 1 21 ASP n 1 22 PHE n 1 23 ASP n 1 24 GLY n 1 25 ASP n 1 26 GLU n 1 27 ILE n 1 28 PHE n 1 29 HIS n 1 30 VAL n 1 31 ASP n 1 32 MET n 1 33 ALA n 1 34 LYS n 1 35 LYS n 1 36 GLU n 1 37 THR n 1 38 VAL n 1 39 TRP n 1 40 ARG n 1 41 LEU n 1 42 GLU n 1 43 GLU n 1 44 PHE n 1 45 GLY n 1 46 ARG n 1 47 PHE n 1 48 ALA n 1 49 SER n 1 50 PHE n 1 51 GLU n 1 52 ALA n 1 53 GLN n 1 54 GLY n 1 55 ALA n 1 56 LEU n 1 57 ALA n 1 58 ASN n 1 59 ILE n 1 60 ALA n 1 61 VAL n 1 62 ASP n 1 63 LYS n 1 64 ALA n 1 65 ASN n 1 66 LEU n 1 67 GLU n 1 68 ILE n 1 69 MET n 1 70 THR n 1 71 LYS n 1 72 ARG n 1 73 SER n 1 74 ASN n 1 75 TYR n 1 76 THR n 1 77 PRO n 1 78 ILE n 1 79 THR n 1 80 ASN n 1 81 VAL n 1 82 PRO n 1 83 PRO n 1 84 GLU n 1 85 VAL n 1 86 THR n 1 87 VAL n 1 88 LEU n 1 89 THR n 1 90 ASN n 1 91 SER n 1 92 PRO n 1 93 VAL n 1 94 GLU n 1 95 LEU n 1 96 ARG n 1 97 GLU n 1 98 PRO n 1 99 ASN n 1 100 VAL n 1 101 LEU n 1 102 ILE n 1 103 CYS n 1 104 PHE n 1 105 ILE n 1 106 ASP n 1 107 LYS n 1 108 PHE n 1 109 THR n 1 110 PRO n 1 111 PRO n 1 112 VAL n 1 113 VAL n 1 114 ASN n 1 115 VAL n 1 116 THR n 1 117 TRP n 1 118 LEU n 1 119 ARG n 1 120 ASN n 1 121 GLY n 1 122 LYS n 1 123 PRO n 1 124 VAL n 1 125 THR n 1 126 THR n 1 127 GLY n 1 128 VAL n 1 129 SER n 1 130 GLU n 1 131 THR n 1 132 VAL n 1 133 PHE n 1 134 LEU n 1 135 PRO n 1 136 ARG n 1 137 GLU n 1 138 ASP n 1 139 HIS n 1 140 LEU n 1 141 PHE n 1 142 ARG n 1 143 LYS n 1 144 PHE n 1 145 HIS n 1 146 TYR n 1 147 LEU n 1 148 PRO n 1 149 PHE n 1 150 LEU n 1 151 PRO n 1 152 SER n 1 153 THR n 1 154 GLU n 1 155 ASP n 1 156 VAL n 1 157 TYR n 1 158 ASP n 1 159 CYS n 1 160 ARG n 1 161 VAL n 1 162 GLU n 1 163 HIS n 1 164 TRP n 1 165 GLY n 1 166 LEU n 1 167 ASP n 1 168 GLU n 1 169 PRO n 1 170 LEU n 1 171 LEU n 1 172 LYS n 1 173 HIS n 1 174 TRP n 1 175 GLU n 1 176 PHE n 2 1 PRO n 2 2 ARG n 2 3 PHE n 2 4 LEU n 2 5 GLU n 2 6 TYR n 2 7 SER n 2 8 THR n 2 9 SER n 2 10 GLU n 2 11 CYS n 2 12 HIS n 2 13 PHE n 2 14 PHE n 2 15 ASN n 2 16 GLY n 2 17 THR n 2 18 GLU n 2 19 ARG n 2 20 VAL n 2 21 ARG n 2 22 TYR n 2 23 LEU n 2 24 ASP n 2 25 ARG n 2 26 TYR n 2 27 PHE n 2 28 HIS n 2 29 ASN n 2 30 GLN n 2 31 GLU n 2 32 GLU n 2 33 ASN n 2 34 VAL n 2 35 ARG n 2 36 PHE n 2 37 ASP n 2 38 SER n 2 39 ASP n 2 40 VAL n 2 41 GLY n 2 42 GLU n 2 43 PHE n 2 44 ARG n 2 45 ALA n 2 46 VAL n 2 47 THR n 2 48 GLU n 2 49 LEU n 2 50 GLY n 2 51 ARG n 2 52 PRO n 2 53 ASP n 2 54 ALA n 2 55 GLU n 2 56 TYR n 2 57 TRP n 2 58 ASN n 2 59 SER n 2 60 GLN n 2 61 LYS n 2 62 ASP n 2 63 LEU n 2 64 LEU n 2 65 GLU n 2 66 GLN n 2 67 LYS n 2 68 ARG n 2 69 GLY n 2 70 ARG n 2 71 VAL n 2 72 ASP n 2 73 ASN n 2 74 TYR n 2 75 CYS n 2 76 ARG n 2 77 HIS n 2 78 ASN n 2 79 TYR n 2 80 GLY n 2 81 VAL n 2 82 VAL n 2 83 GLU n 2 84 SER n 2 85 PHE n 2 86 THR n 2 87 VAL n 2 88 GLN n 2 89 ARG n 2 90 ARG n 2 91 VAL n 2 92 HIS n 2 93 PRO n 2 94 LYS n 2 95 VAL n 2 96 THR n 2 97 VAL n 2 98 TYR n 2 99 PRO n 2 100 SER n 2 101 LYS n 2 102 THR n 2 103 GLN n 2 104 PRO n 2 105 LEU n 2 106 GLN n 2 107 HIS n 2 108 HIS n 2 109 ASN n 2 110 LEU n 2 111 LEU n 2 112 VAL n 2 113 CYS n 2 114 SER n 2 115 VAL n 2 116 SER n 2 117 GLY n 2 118 PHE n 2 119 TYR n 2 120 PRO n 2 121 GLY n 2 122 SER n 2 123 ILE n 2 124 GLU n 2 125 VAL n 2 126 ARG n 2 127 TRP n 2 128 PHE n 2 129 ARG n 2 130 ASN n 2 131 GLY n 2 132 GLN n 2 133 GLU n 2 134 GLU n 2 135 LYS n 2 136 THR n 2 137 GLY n 2 138 VAL n 2 139 VAL n 2 140 SER n 2 141 THR n 2 142 GLY n 2 143 LEU n 2 144 ILE n 2 145 HIS n 2 146 ASN n 2 147 GLY n 2 148 ASP n 2 149 TRP n 2 150 THR n 2 151 PHE n 2 152 GLN n 2 153 THR n 2 154 LEU n 2 155 VAL n 2 156 MET n 2 157 LEU n 2 158 GLU n 2 159 THR n 2 160 VAL n 2 161 PRO n 2 162 ARG n 2 163 SER n 2 164 GLY n 2 165 GLU n 2 166 VAL n 2 167 TYR n 2 168 THR n 2 169 CYS n 2 170 GLN n 2 171 VAL n 2 172 GLU n 2 173 HIS n 2 174 PRO n 2 175 SER n 2 176 VAL n 2 177 THR n 2 178 SER n 2 179 PRO n 2 180 LEU n 2 181 THR n 2 182 VAL n 2 183 GLU n 2 184 TRP n 2 185 ARG n 2 186 ALA n 2 187 ARG n 3 1 PRO n 3 2 VAL n 3 3 SER n 3 4 LYS n 3 5 MET n 3 6 ARG n 3 7 MET n 3 8 ALA n 3 9 THR n 3 10 PRO n 3 11 LEU n 3 12 LEU n 3 13 MET n 3 14 GLN n 3 15 ALA n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? ? ? ? ? ? 9.5.3 ? 'PLASMA MEMBRANE' ? ? B-LYMPHOCYTE ? ? ? 2 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? ? ? ? ? ? 9.5.3 ? 'PLASMA MEMBRANE' ? ? B-LYMPHOCYTE ? ? ? 3 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? ? ? ? ? ? 9.5.3 ? 'PLASMA MEMBRANE' ? ? B-LYMPHOCYTE ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP 2DRA_HUMAN 1 P01903 1 ;MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFE AQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSET VFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFIIK GVRKSNAAERRGPL ; ? 2 UNP HB2B_HUMAN 2 P01912 1 ;MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVT ELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRW FRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL FLGAGLFIYFRNQKGHSGLQPRGFLS ; ? 3 UNP HG2A_HUMAN 3 P04233 1 ;MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLLLAGQATTAYFLYQQQGRLDK LTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKG SFPENLTHLKNTMETIDWKVFESWMHHWLLFEMSRHSLEQKPTDAPPKVLTKCQEEVSHIPAVHPGSFRPKCDENGNYLP LQCYGSIGYCWCVFPNGTEVPNTRSRGHHNCSESLELEDPSSGLGVTKQDLGPVPM ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1A6A A 1 ? 176 ? P01903 30 ? 205 ? 5 180 2 2 1A6A B 1 ? 187 ? P01912 34 ? 220 ? 5 191 3 3 1A6A C 1 ? 15 ? P04233 103 ? 117 ? 87 101 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1A6A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_percent_sol 52. _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '12% PEG 4K, 100 MM MGCL2, 100 MM ACETATE BUFFER, PH 4.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type FUJI _diffrn_detector.pdbx_collection_date 1994-07 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F1 _diffrn_source.pdbx_wavelength 0.918 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1A6A _reflns.observed_criterion_sigma_I -3. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15. _reflns.d_resolution_high 2.75 _reflns.number_obs 14428 _reflns.number_all ? _reflns.percent_possible_obs 96.9 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.7 _reflns.B_iso_Wilson_estimate 30.8 _reflns.pdbx_redundancy 3.2 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.75 _reflns_shell.d_res_low 3.0 _reflns_shell.percent_possible_all 97.2 _reflns_shell.Rmerge_I_obs 0.314 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1A6A _refine.ls_number_reflns_obs 13095 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.0 _refine.ls_d_res_high 2.75 _refine.ls_percent_reflns_obs 97.9 _refine.ls_R_factor_obs 0.246 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.246 _refine.ls_R_factor_R_free 0.325 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 1323 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 47.6 _refine.aniso_B[1][1] -10. _refine.aniso_B[2][2] -10. _refine.aniso_B[3][3] 10. _refine.aniso_B[1][2] -10. _refine.aniso_B[1][3] 0. _refine.aniso_B[2][3] 0. _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;RESIDUES 5 - 180 OF THE ALPHA SUBUNIT AND RESIDUES 5 - 191 OF THE BETA SUBUNIT ARE CLEARLY VISIBLE IN 2FO-FC ELECTRON DENSITY MAPS. THREE SMALL BREAKS IN MAIN-CHAIN DENSITY OCCUR IN LOOP REGIONS OF THE BETA 2 DOMAIN (AT BETA 109, 172, AND 189). ; _refine.pdbx_starting_model 'PDB ENTRY 1DLH' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1A6A _refine_analyze.Luzzati_coordinate_error_obs 0.39 _refine_analyze.Luzzati_sigma_a_obs 0.61 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.53 _refine_analyze.Luzzati_sigma_a_free 0.72 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3108 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 3158 _refine_hist.d_res_high 2.75 _refine_hist.d_res_low 6.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.6 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.31 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 3.53 3.00 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 5.98 4.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 5.52 4.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 9.35 6.00 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.75 _refine_ls_shell.d_res_low 2.86 _refine_ls_shell.number_reflns_R_work 1442 _refine_ls_shell.R_factor_R_work 0.373 _refine_ls_shell.percent_reflns_obs 96.7 _refine_ls_shell.R_factor_R_free 0.444 _refine_ls_shell.R_factor_R_free_error 0.036 _refine_ls_shell.percent_reflns_R_free 10.1 _refine_ls_shell.number_reflns_R_free 162 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 PARAM19.SOL TOPH19.SOL 'X-RAY DIFFRACTION' 3 PARAM3_MOD.CHO TOPH3.CHO 'X-RAY DIFFRACTION' # _struct.entry_id 1A6A _struct.title 'THE STRUCTURE OF AN INTERMEDIATE IN CLASS II MHC MATURATION: CLIP BOUND TO HLA-DR3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1A6A _struct_keywords.pdbx_keywords 'COMPLEX (TRANSMEMBRANE/GLYCOPROTEIN)' _struct_keywords.text 'MHC GLYCOPROTEIN, COMPLEX (TRANSMEMBRANE-GLYCOPROTEIN), COMPLEX (TRANSMEMBRANE-GLYCOPROTEIN) complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 42 ? PHE A 47 ? GLU A 46 PHE A 51 1 ? 6 HELX_P HELX_P2 2 ALA A 52 ? ARG A 72 ? ALA A 56 ARG A 76 1 ? 21 HELX_P HELX_P3 3 GLU B 48 ? SER B 59 ? GLU B 52 SER B 63 5 ? 12 HELX_P HELX_P4 4 LYS B 61 ? ASN B 73 ? LYS B 65 ASN B 77 1 ? 13 HELX_P HELX_P5 5 CYS B 75 ? VAL B 82 ? CYS B 79 VAL B 86 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 103 SG ? ? ? 1_555 A CYS 159 SG ? ? A CYS 107 A CYS 163 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf2 disulf ? ? B CYS 11 SG ? ? ? 1_555 B CYS 75 SG ? ? B CYS 15 B CYS 79 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf3 disulf ? ? B CYS 113 SG ? ? ? 1_555 B CYS 169 SG ? ? B CYS 117 B CYS 173 1_555 ? ? ? ? ? ? ? 2.054 ? ? covale1 covale one ? A ASN 74 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 78 A NAG 181 1_555 ? ? ? ? ? ? ? 1.453 ? N-Glycosylation covale2 covale one ? A ASN 114 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 118 A NAG 200 1_555 ? ? ? ? ? ? ? 1.440 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 109 A . ? THR 113 A PRO 110 A ? PRO 114 A 1 -0.11 2 TYR 119 B . ? TYR 123 B PRO 120 B ? PRO 124 B 1 -0.51 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 3 ? D ? 4 ? E ? 3 ? F ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 3 ? LEU A 10 ? ILE A 7 LEU A 14 A 2 SER A 15 ? PHE A 22 ? SER A 19 PHE A 26 A 3 ASP A 25 ? ASP A 31 ? ASP A 29 ASP A 35 A 4 GLU A 36 ? TRP A 39 ? GLU A 40 TRP A 43 B 1 THR A 86 ? THR A 89 ? THR A 90 THR A 93 B 2 ASN A 99 ? ILE A 105 ? ASN A 103 ILE A 109 B 3 LYS A 143 ? PHE A 149 ? LYS A 147 PHE A 153 B 4 VAL A 128 ? GLU A 130 ? VAL A 132 GLU A 134 C 1 ASN A 114 ? ARG A 119 ? ASN A 118 ARG A 123 C 2 VAL A 156 ? GLU A 162 ? VAL A 160 GLU A 166 C 3 LEU A 170 ? GLU A 175 ? LEU A 174 GLU A 179 D 1 GLU B 5 ? PHE B 14 ? GLU B 9 PHE B 18 D 2 ARG B 19 ? HIS B 28 ? ARG B 23 HIS B 32 D 3 GLU B 31 ? ASP B 37 ? GLU B 35 ASP B 41 D 4 PHE B 43 ? ALA B 45 ? PHE B 47 ALA B 49 E 1 LYS B 94 ? PRO B 99 ? LYS B 98 PRO B 103 E 2 LEU B 111 ? SER B 116 ? LEU B 115 SER B 120 E 3 GLN B 152 ? LEU B 154 ? GLN B 156 LEU B 158 F 1 ILE B 123 ? ARG B 129 ? ILE B 127 ARG B 133 F 2 VAL B 166 ? HIS B 173 ? VAL B 170 HIS B 177 F 3 LEU B 180 ? ARG B 185 ? LEU B 184 ARG B 189 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 4 ? O ILE A 8 N ASP A 21 ? N ASP A 25 A 2 3 O PHE A 20 ? O PHE A 24 N PHE A 28 ? N PHE A 32 A 3 4 O HIS A 29 ? O HIS A 33 N VAL A 38 ? N VAL A 42 B 1 2 O THR A 86 ? O THR A 90 N PHE A 104 ? N PHE A 108 B 2 3 O ASN A 99 ? O ASN A 103 N PHE A 149 ? N PHE A 153 B 3 4 O TYR A 146 ? O TYR A 150 N SER A 129 ? N SER A 133 C 1 2 O ASN A 114 ? O ASN A 118 N GLU A 162 ? N GLU A 166 C 2 3 O TYR A 157 ? O TYR A 161 N TRP A 174 ? N TRP A 178 D 1 2 O TYR B 6 ? O TYR B 10 N PHE B 27 ? N PHE B 31 D 2 3 O ASP B 24 ? O ASP B 28 N PHE B 36 ? N PHE B 40 D 3 4 O ARG B 35 ? O ARG B 39 N ARG B 44 ? N ARG B 48 E 1 2 O LYS B 94 ? O LYS B 98 N SER B 116 ? N SER B 120 E 2 3 O VAL B 115 ? O VAL B 119 N THR B 153 ? N THR B 157 F 1 2 O GLU B 124 ? O GLU B 128 N GLU B 172 ? N GLU B 176 F 2 3 O TYR B 167 ? O TYR B 171 N TRP B 184 ? N TRP B 188 # _database_PDB_matrix.entry_id 1A6A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1A6A _atom_sites.fract_transf_matrix[1][1] 0.012747 _atom_sites.fract_transf_matrix[1][2] 0.007359 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014719 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006285 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 5 5 HIS HIS A . n A 1 2 VAL 2 6 6 VAL VAL A . n A 1 3 ILE 3 7 7 ILE ILE A . n A 1 4 ILE 4 8 8 ILE ILE A . n A 1 5 GLN 5 9 9 GLN GLN A . n A 1 6 ALA 6 10 10 ALA ALA A . n A 1 7 GLU 7 11 11 GLU GLU A . n A 1 8 PHE 8 12 12 PHE PHE A . n A 1 9 TYR 9 13 13 TYR TYR A . n A 1 10 LEU 10 14 14 LEU LEU A . n A 1 11 ASN 11 15 15 ASN ASN A . n A 1 12 PRO 12 16 16 PRO PRO A . n A 1 13 ASP 13 17 17 ASP ASP A . n A 1 14 GLN 14 18 18 GLN GLN A . n A 1 15 SER 15 19 19 SER SER A . n A 1 16 GLY 16 20 20 GLY GLY A . n A 1 17 GLU 17 21 21 GLU GLU A . n A 1 18 PHE 18 22 22 PHE PHE A . n A 1 19 MET 19 23 23 MET MET A . n A 1 20 PHE 20 24 24 PHE PHE A . n A 1 21 ASP 21 25 25 ASP ASP A . n A 1 22 PHE 22 26 26 PHE PHE A . n A 1 23 ASP 23 27 27 ASP ASP A . n A 1 24 GLY 24 28 28 GLY GLY A . n A 1 25 ASP 25 29 29 ASP ASP A . n A 1 26 GLU 26 30 30 GLU GLU A . n A 1 27 ILE 27 31 31 ILE ILE A . n A 1 28 PHE 28 32 32 PHE PHE A . n A 1 29 HIS 29 33 33 HIS HIS A . n A 1 30 VAL 30 34 34 VAL VAL A . n A 1 31 ASP 31 35 35 ASP ASP A . n A 1 32 MET 32 36 36 MET MET A . n A 1 33 ALA 33 37 37 ALA ALA A . n A 1 34 LYS 34 38 38 LYS LYS A . n A 1 35 LYS 35 39 39 LYS LYS A . n A 1 36 GLU 36 40 40 GLU GLU A . n A 1 37 THR 37 41 41 THR THR A . n A 1 38 VAL 38 42 42 VAL VAL A . n A 1 39 TRP 39 43 43 TRP TRP A . n A 1 40 ARG 40 44 44 ARG ARG A . n A 1 41 LEU 41 45 45 LEU LEU A . n A 1 42 GLU 42 46 46 GLU GLU A . n A 1 43 GLU 43 47 47 GLU GLU A . n A 1 44 PHE 44 48 48 PHE PHE A . n A 1 45 GLY 45 49 49 GLY GLY A . n A 1 46 ARG 46 50 50 ARG ARG A . n A 1 47 PHE 47 51 51 PHE PHE A . n A 1 48 ALA 48 52 52 ALA ALA A . n A 1 49 SER 49 53 53 SER SER A . n A 1 50 PHE 50 54 54 PHE PHE A . n A 1 51 GLU 51 55 55 GLU GLU A . n A 1 52 ALA 52 56 56 ALA ALA A . n A 1 53 GLN 53 57 57 GLN GLN A . n A 1 54 GLY 54 58 58 GLY GLY A . n A 1 55 ALA 55 59 59 ALA ALA A . n A 1 56 LEU 56 60 60 LEU LEU A . n A 1 57 ALA 57 61 61 ALA ALA A . n A 1 58 ASN 58 62 62 ASN ASN A . n A 1 59 ILE 59 63 63 ILE ILE A . n A 1 60 ALA 60 64 64 ALA ALA A . n A 1 61 VAL 61 65 65 VAL VAL A . n A 1 62 ASP 62 66 66 ASP ASP A . n A 1 63 LYS 63 67 67 LYS LYS A . n A 1 64 ALA 64 68 68 ALA ALA A . n A 1 65 ASN 65 69 69 ASN ASN A . n A 1 66 LEU 66 70 70 LEU LEU A . n A 1 67 GLU 67 71 71 GLU GLU A . n A 1 68 ILE 68 72 72 ILE ILE A . n A 1 69 MET 69 73 73 MET MET A . n A 1 70 THR 70 74 74 THR THR A . n A 1 71 LYS 71 75 75 LYS LYS A . n A 1 72 ARG 72 76 76 ARG ARG A . n A 1 73 SER 73 77 77 SER SER A . n A 1 74 ASN 74 78 78 ASN ASN A . n A 1 75 TYR 75 79 79 TYR TYR A . n A 1 76 THR 76 80 80 THR THR A . n A 1 77 PRO 77 81 81 PRO PRO A . n A 1 78 ILE 78 82 82 ILE ILE A . n A 1 79 THR 79 83 83 THR THR A . n A 1 80 ASN 80 84 84 ASN ASN A . n A 1 81 VAL 81 85 85 VAL VAL A . n A 1 82 PRO 82 86 86 PRO PRO A . n A 1 83 PRO 83 87 87 PRO PRO A . n A 1 84 GLU 84 88 88 GLU GLU A . n A 1 85 VAL 85 89 89 VAL VAL A . n A 1 86 THR 86 90 90 THR THR A . n A 1 87 VAL 87 91 91 VAL VAL A . n A 1 88 LEU 88 92 92 LEU LEU A . n A 1 89 THR 89 93 93 THR THR A . n A 1 90 ASN 90 94 94 ASN ASN A . n A 1 91 SER 91 95 95 SER SER A . n A 1 92 PRO 92 96 96 PRO PRO A . n A 1 93 VAL 93 97 97 VAL VAL A . n A 1 94 GLU 94 98 98 GLU GLU A . n A 1 95 LEU 95 99 99 LEU LEU A . n A 1 96 ARG 96 100 100 ARG ARG A . n A 1 97 GLU 97 101 101 GLU GLU A . n A 1 98 PRO 98 102 102 PRO PRO A . n A 1 99 ASN 99 103 103 ASN ASN A . n A 1 100 VAL 100 104 104 VAL VAL A . n A 1 101 LEU 101 105 105 LEU LEU A . n A 1 102 ILE 102 106 106 ILE ILE A . n A 1 103 CYS 103 107 107 CYS CYS A . n A 1 104 PHE 104 108 108 PHE PHE A . n A 1 105 ILE 105 109 109 ILE ILE A . n A 1 106 ASP 106 110 110 ASP ASP A . n A 1 107 LYS 107 111 111 LYS LYS A . n A 1 108 PHE 108 112 112 PHE PHE A . n A 1 109 THR 109 113 113 THR THR A . n A 1 110 PRO 110 114 114 PRO PRO A . n A 1 111 PRO 111 115 115 PRO PRO A . n A 1 112 VAL 112 116 116 VAL VAL A . n A 1 113 VAL 113 117 117 VAL VAL A . n A 1 114 ASN 114 118 118 ASN ASN A . n A 1 115 VAL 115 119 119 VAL VAL A . n A 1 116 THR 116 120 120 THR THR A . n A 1 117 TRP 117 121 121 TRP TRP A . n A 1 118 LEU 118 122 122 LEU LEU A . n A 1 119 ARG 119 123 123 ARG ARG A . n A 1 120 ASN 120 124 124 ASN ASN A . n A 1 121 GLY 121 125 125 GLY GLY A . n A 1 122 LYS 122 126 126 LYS LYS A . n A 1 123 PRO 123 127 127 PRO PRO A . n A 1 124 VAL 124 128 128 VAL VAL A . n A 1 125 THR 125 129 129 THR THR A . n A 1 126 THR 126 130 130 THR THR A . n A 1 127 GLY 127 131 131 GLY GLY A . n A 1 128 VAL 128 132 132 VAL VAL A . n A 1 129 SER 129 133 133 SER SER A . n A 1 130 GLU 130 134 134 GLU GLU A . n A 1 131 THR 131 135 135 THR THR A . n A 1 132 VAL 132 136 136 VAL VAL A . n A 1 133 PHE 133 137 137 PHE PHE A . n A 1 134 LEU 134 138 138 LEU LEU A . n A 1 135 PRO 135 139 139 PRO PRO A . n A 1 136 ARG 136 140 140 ARG ARG A . n A 1 137 GLU 137 141 141 GLU GLU A . n A 1 138 ASP 138 142 142 ASP ASP A . n A 1 139 HIS 139 143 143 HIS HIS A . n A 1 140 LEU 140 144 144 LEU LEU A . n A 1 141 PHE 141 145 145 PHE PHE A . n A 1 142 ARG 142 146 146 ARG ARG A . n A 1 143 LYS 143 147 147 LYS LYS A . n A 1 144 PHE 144 148 148 PHE PHE A . n A 1 145 HIS 145 149 149 HIS HIS A . n A 1 146 TYR 146 150 150 TYR TYR A . n A 1 147 LEU 147 151 151 LEU LEU A . n A 1 148 PRO 148 152 152 PRO PRO A . n A 1 149 PHE 149 153 153 PHE PHE A . n A 1 150 LEU 150 154 154 LEU LEU A . n A 1 151 PRO 151 155 155 PRO PRO A . n A 1 152 SER 152 156 156 SER SER A . n A 1 153 THR 153 157 157 THR THR A . n A 1 154 GLU 154 158 158 GLU GLU A . n A 1 155 ASP 155 159 159 ASP ASP A . n A 1 156 VAL 156 160 160 VAL VAL A . n A 1 157 TYR 157 161 161 TYR TYR A . n A 1 158 ASP 158 162 162 ASP ASP A . n A 1 159 CYS 159 163 163 CYS CYS A . n A 1 160 ARG 160 164 164 ARG ARG A . n A 1 161 VAL 161 165 165 VAL VAL A . n A 1 162 GLU 162 166 166 GLU GLU A . n A 1 163 HIS 163 167 167 HIS HIS A . n A 1 164 TRP 164 168 168 TRP TRP A . n A 1 165 GLY 165 169 169 GLY GLY A . n A 1 166 LEU 166 170 170 LEU LEU A . n A 1 167 ASP 167 171 171 ASP ASP A . n A 1 168 GLU 168 172 172 GLU GLU A . n A 1 169 PRO 169 173 173 PRO PRO A . n A 1 170 LEU 170 174 174 LEU LEU A . n A 1 171 LEU 171 175 175 LEU LEU A . n A 1 172 LYS 172 176 176 LYS LYS A . n A 1 173 HIS 173 177 177 HIS HIS A . n A 1 174 TRP 174 178 178 TRP TRP A . n A 1 175 GLU 175 179 179 GLU GLU A . n A 1 176 PHE 176 180 180 PHE PHE A . n B 2 1 PRO 1 5 5 PRO PRO B . n B 2 2 ARG 2 6 6 ARG ARG B . n B 2 3 PHE 3 7 7 PHE PHE B . n B 2 4 LEU 4 8 8 LEU LEU B . n B 2 5 GLU 5 9 9 GLU GLU B . n B 2 6 TYR 6 10 10 TYR TYR B . n B 2 7 SER 7 11 11 SER SER B . n B 2 8 THR 8 12 12 THR THR B . n B 2 9 SER 9 13 13 SER SER B . n B 2 10 GLU 10 14 14 GLU GLU B . n B 2 11 CYS 11 15 15 CYS CYS B . n B 2 12 HIS 12 16 16 HIS HIS B . n B 2 13 PHE 13 17 17 PHE PHE B . n B 2 14 PHE 14 18 18 PHE PHE B . n B 2 15 ASN 15 19 19 ASN ASN B . n B 2 16 GLY 16 20 20 GLY GLY B . n B 2 17 THR 17 21 21 THR THR B . n B 2 18 GLU 18 22 22 GLU GLU B . n B 2 19 ARG 19 23 23 ARG ARG B . n B 2 20 VAL 20 24 24 VAL VAL B . n B 2 21 ARG 21 25 25 ARG ARG B . n B 2 22 TYR 22 26 26 TYR TYR B . n B 2 23 LEU 23 27 27 LEU LEU B . n B 2 24 ASP 24 28 28 ASP ASP B . n B 2 25 ARG 25 29 29 ARG ARG B . n B 2 26 TYR 26 30 30 TYR TYR B . n B 2 27 PHE 27 31 31 PHE PHE B . n B 2 28 HIS 28 32 32 HIS HIS B . n B 2 29 ASN 29 33 33 ASN ASN B . n B 2 30 GLN 30 34 34 GLN GLN B . n B 2 31 GLU 31 35 35 GLU GLU B . n B 2 32 GLU 32 36 36 GLU GLU B . n B 2 33 ASN 33 37 37 ASN ASN B . n B 2 34 VAL 34 38 38 VAL VAL B . n B 2 35 ARG 35 39 39 ARG ARG B . n B 2 36 PHE 36 40 40 PHE PHE B . n B 2 37 ASP 37 41 41 ASP ASP B . n B 2 38 SER 38 42 42 SER SER B . n B 2 39 ASP 39 43 43 ASP ASP B . n B 2 40 VAL 40 44 44 VAL VAL B . n B 2 41 GLY 41 45 45 GLY GLY B . n B 2 42 GLU 42 46 46 GLU GLU B . n B 2 43 PHE 43 47 47 PHE PHE B . n B 2 44 ARG 44 48 48 ARG ARG B . n B 2 45 ALA 45 49 49 ALA ALA B . n B 2 46 VAL 46 50 50 VAL VAL B . n B 2 47 THR 47 51 51 THR THR B . n B 2 48 GLU 48 52 52 GLU GLU B . n B 2 49 LEU 49 53 53 LEU LEU B . n B 2 50 GLY 50 54 54 GLY GLY B . n B 2 51 ARG 51 55 55 ARG ARG B . n B 2 52 PRO 52 56 56 PRO PRO B . n B 2 53 ASP 53 57 57 ASP ASP B . n B 2 54 ALA 54 58 58 ALA ALA B . n B 2 55 GLU 55 59 59 GLU GLU B . n B 2 56 TYR 56 60 60 TYR TYR B . n B 2 57 TRP 57 61 61 TRP TRP B . n B 2 58 ASN 58 62 62 ASN ASN B . n B 2 59 SER 59 63 63 SER SER B . n B 2 60 GLN 60 64 64 GLN GLN B . n B 2 61 LYS 61 65 65 LYS LYS B . n B 2 62 ASP 62 66 66 ASP ASP B . n B 2 63 LEU 63 67 67 LEU LEU B . n B 2 64 LEU 64 68 68 LEU LEU B . n B 2 65 GLU 65 69 69 GLU GLU B . n B 2 66 GLN 66 70 70 GLN GLN B . n B 2 67 LYS 67 71 71 LYS LYS B . n B 2 68 ARG 68 72 72 ARG ARG B . n B 2 69 GLY 69 73 73 GLY GLY B . n B 2 70 ARG 70 74 74 ARG ARG B . n B 2 71 VAL 71 75 75 VAL VAL B . n B 2 72 ASP 72 76 76 ASP ASP B . n B 2 73 ASN 73 77 77 ASN ASN B . n B 2 74 TYR 74 78 78 TYR TYR B . n B 2 75 CYS 75 79 79 CYS CYS B . n B 2 76 ARG 76 80 80 ARG ARG B . n B 2 77 HIS 77 81 81 HIS HIS B . n B 2 78 ASN 78 82 82 ASN ASN B . n B 2 79 TYR 79 83 83 TYR TYR B . n B 2 80 GLY 80 84 84 GLY GLY B . n B 2 81 VAL 81 85 85 VAL VAL B . n B 2 82 VAL 82 86 86 VAL VAL B . n B 2 83 GLU 83 87 87 GLU GLU B . n B 2 84 SER 84 88 88 SER SER B . n B 2 85 PHE 85 89 89 PHE PHE B . n B 2 86 THR 86 90 90 THR THR B . n B 2 87 VAL 87 91 91 VAL VAL B . n B 2 88 GLN 88 92 92 GLN GLN B . n B 2 89 ARG 89 93 93 ARG ARG B . n B 2 90 ARG 90 94 94 ARG ARG B . n B 2 91 VAL 91 95 95 VAL VAL B . n B 2 92 HIS 92 96 96 HIS HIS B . n B 2 93 PRO 93 97 97 PRO PRO B . n B 2 94 LYS 94 98 98 LYS LYS B . n B 2 95 VAL 95 99 99 VAL VAL B . n B 2 96 THR 96 100 100 THR THR B . n B 2 97 VAL 97 101 101 VAL VAL B . n B 2 98 TYR 98 102 102 TYR TYR B . n B 2 99 PRO 99 103 103 PRO PRO B . n B 2 100 SER 100 104 104 SER SER B . n B 2 101 LYS 101 105 105 LYS LYS B . n B 2 102 THR 102 106 106 THR THR B . n B 2 103 GLN 103 107 107 GLN GLN B . n B 2 104 PRO 104 108 108 PRO PRO B . n B 2 105 LEU 105 109 109 LEU LEU B . n B 2 106 GLN 106 110 110 GLN GLN B . n B 2 107 HIS 107 111 111 HIS HIS B . n B 2 108 HIS 108 112 112 HIS HIS B . n B 2 109 ASN 109 113 113 ASN ASN B . n B 2 110 LEU 110 114 114 LEU LEU B . n B 2 111 LEU 111 115 115 LEU LEU B . n B 2 112 VAL 112 116 116 VAL VAL B . n B 2 113 CYS 113 117 117 CYS CYS B . n B 2 114 SER 114 118 118 SER SER B . n B 2 115 VAL 115 119 119 VAL VAL B . n B 2 116 SER 116 120 120 SER SER B . n B 2 117 GLY 117 121 121 GLY GLY B . n B 2 118 PHE 118 122 122 PHE PHE B . n B 2 119 TYR 119 123 123 TYR TYR B . n B 2 120 PRO 120 124 124 PRO PRO B . n B 2 121 GLY 121 125 125 GLY GLY B . n B 2 122 SER 122 126 126 SER SER B . n B 2 123 ILE 123 127 127 ILE ILE B . n B 2 124 GLU 124 128 128 GLU GLU B . n B 2 125 VAL 125 129 129 VAL VAL B . n B 2 126 ARG 126 130 130 ARG ARG B . n B 2 127 TRP 127 131 131 TRP TRP B . n B 2 128 PHE 128 132 132 PHE PHE B . n B 2 129 ARG 129 133 133 ARG ARG B . n B 2 130 ASN 130 134 134 ASN ASN B . n B 2 131 GLY 131 135 135 GLY GLY B . n B 2 132 GLN 132 136 136 GLN GLN B . n B 2 133 GLU 133 137 137 GLU GLU B . n B 2 134 GLU 134 138 138 GLU GLU B . n B 2 135 LYS 135 139 139 LYS LYS B . n B 2 136 THR 136 140 140 THR THR B . n B 2 137 GLY 137 141 141 GLY GLY B . n B 2 138 VAL 138 142 142 VAL VAL B . n B 2 139 VAL 139 143 143 VAL VAL B . n B 2 140 SER 140 144 144 SER SER B . n B 2 141 THR 141 145 145 THR THR B . n B 2 142 GLY 142 146 146 GLY GLY B . n B 2 143 LEU 143 147 147 LEU LEU B . n B 2 144 ILE 144 148 148 ILE ILE B . n B 2 145 HIS 145 149 149 HIS HIS B . n B 2 146 ASN 146 150 150 ASN ASN B . n B 2 147 GLY 147 151 151 GLY GLY B . n B 2 148 ASP 148 152 152 ASP ASP B . n B 2 149 TRP 149 153 153 TRP TRP B . n B 2 150 THR 150 154 154 THR THR B . n B 2 151 PHE 151 155 155 PHE PHE B . n B 2 152 GLN 152 156 156 GLN GLN B . n B 2 153 THR 153 157 157 THR THR B . n B 2 154 LEU 154 158 158 LEU LEU B . n B 2 155 VAL 155 159 159 VAL VAL B . n B 2 156 MET 156 160 160 MET MET B . n B 2 157 LEU 157 161 161 LEU LEU B . n B 2 158 GLU 158 162 162 GLU GLU B . n B 2 159 THR 159 163 163 THR THR B . n B 2 160 VAL 160 164 164 VAL VAL B . n B 2 161 PRO 161 165 165 PRO PRO B . n B 2 162 ARG 162 166 166 ARG ARG B . n B 2 163 SER 163 167 167 SER SER B . n B 2 164 GLY 164 168 168 GLY GLY B . n B 2 165 GLU 165 169 169 GLU GLU B . n B 2 166 VAL 166 170 170 VAL VAL B . n B 2 167 TYR 167 171 171 TYR TYR B . n B 2 168 THR 168 172 172 THR THR B . n B 2 169 CYS 169 173 173 CYS CYS B . n B 2 170 GLN 170 174 174 GLN GLN B . n B 2 171 VAL 171 175 175 VAL VAL B . n B 2 172 GLU 172 176 176 GLU GLU B . n B 2 173 HIS 173 177 177 HIS HIS B . n B 2 174 PRO 174 178 178 PRO PRO B . n B 2 175 SER 175 179 179 SER SER B . n B 2 176 VAL 176 180 180 VAL VAL B . n B 2 177 THR 177 181 181 THR THR B . n B 2 178 SER 178 182 182 SER SER B . n B 2 179 PRO 179 183 183 PRO PRO B . n B 2 180 LEU 180 184 184 LEU LEU B . n B 2 181 THR 181 185 185 THR THR B . n B 2 182 VAL 182 186 186 VAL VAL B . n B 2 183 GLU 183 187 187 GLU GLU B . n B 2 184 TRP 184 188 188 TRP TRP B . n B 2 185 ARG 185 189 189 ARG ARG B . n B 2 186 ALA 186 190 190 ALA ALA B . n B 2 187 ARG 187 191 191 ARG ARG B . n C 3 1 PRO 1 87 87 PRO PRO C . n C 3 2 VAL 2 88 88 VAL VAL C . n C 3 3 SER 3 89 89 SER SER C . n C 3 4 LYS 4 90 90 LYS LYS C . n C 3 5 MET 5 91 91 MET MET C . n C 3 6 ARG 6 92 92 ARG ARG C . n C 3 7 MET 7 93 93 MET MET C . n C 3 8 ALA 8 94 94 ALA ALA C . n C 3 9 THR 9 95 95 THR THR C . n C 3 10 PRO 10 96 96 PRO PRO C . n C 3 11 LEU 11 97 97 LEU LEU C . n C 3 12 LEU 12 98 98 LEU LEU C . n C 3 13 MET 13 99 99 MET MET C . n C 3 14 GLN 14 100 100 GLN GLN C . n C 3 15 ALA 15 101 101 ALA ALA C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 181 100 NAG NAG A . E 4 NAG 1 200 200 NAG NAG A . F 5 HOH 1 201 6 HOH HOH A . F 5 HOH 2 202 8 HOH HOH A . F 5 HOH 3 203 9 HOH HOH A . F 5 HOH 4 204 16 HOH HOH A . F 5 HOH 5 205 17 HOH HOH A . F 5 HOH 6 206 20 HOH HOH A . F 5 HOH 7 207 21 HOH HOH A . F 5 HOH 8 208 22 HOH HOH A . G 5 HOH 1 192 1 HOH HOH B . G 5 HOH 2 193 2 HOH HOH B . G 5 HOH 3 194 3 HOH HOH B . G 5 HOH 4 195 4 HOH HOH B . G 5 HOH 5 196 5 HOH HOH B . G 5 HOH 6 197 7 HOH HOH B . G 5 HOH 7 198 11 HOH HOH B . G 5 HOH 8 199 12 HOH HOH B . G 5 HOH 9 200 13 HOH HOH B . G 5 HOH 10 201 14 HOH HOH B . G 5 HOH 11 202 15 HOH HOH B . G 5 HOH 12 203 18 HOH HOH B . G 5 HOH 13 204 19 HOH HOH B . H 5 HOH 1 10 10 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 74 A ASN 78 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 114 A ASN 118 ? ASN 'GLYCOSYLATION SITE' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H 2 1,2 A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7340 ? 1 MORE -42 ? 1 'SSA (A^2)' 17990 ? 2 'ABSA (A^2)' 17000 ? 2 MORE -85 ? 2 'SSA (A^2)' 33650 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 x,x-y,-z 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-05-27 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2023-08-02 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' Advisory 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Refinement description' 12 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 4 'Structure model' software 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen 10 5 'Structure model' chem_comp 11 5 'Structure model' database_2 12 5 'Structure model' pdbx_initial_refinement_model 13 5 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_software.name' 6 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 4 'Structure model' '_struct_conn.pdbx_role' 8 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 20 5 'Structure model' '_chem_comp.pdbx_synonyms' 21 5 'Structure model' '_database_2.pdbx_DOI' 22 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 ROTAVATA/AGROVATA 'data reduction' . ? 2 AMoRE phasing . ? 3 X-PLOR refinement 3.1 ? 4 CCP4 'data scaling' '(AGROVATA' ? 5 ROTAVATA 'data scaling' . ? 6 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C B PHE 31 ? ? N B HIS 32 ? ? 1.177 1.336 -0.159 0.023 Y 2 1 CD B GLU 87 ? ? OE2 B GLU 87 ? ? 1.335 1.252 0.083 0.011 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 O _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 PHE _pdbx_validate_rmsd_angle.auth_seq_id_1 31 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 PHE _pdbx_validate_rmsd_angle.auth_seq_id_2 31 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 HIS _pdbx_validate_rmsd_angle.auth_seq_id_3 32 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 112.66 _pdbx_validate_rmsd_angle.angle_target_value 122.70 _pdbx_validate_rmsd_angle.angle_deviation -10.04 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 32 ? ? -171.75 -176.31 2 1 THR A 90 ? ? -163.29 116.89 3 1 LYS A 111 ? ? 46.38 73.71 4 1 THR A 130 ? ? -66.28 76.22 5 1 HIS A 143 ? ? 39.60 43.33 6 1 LEU A 144 ? ? -109.78 -166.23 7 1 LYS A 147 ? ? 177.85 133.60 8 1 SER A 156 ? ? -125.40 -164.53 9 1 THR A 157 ? ? -140.14 -2.32 10 1 LEU A 170 ? ? -175.38 102.73 11 1 ASP A 171 ? ? -35.99 -73.12 12 1 PRO A 173 ? ? -60.90 99.39 13 1 GLU A 179 ? ? -170.93 144.41 14 1 ASN B 19 ? ? 58.37 70.53 15 1 GLU B 22 ? ? -52.47 -71.62 16 1 GLN B 34 ? ? 71.60 -7.37 17 1 SER B 88 ? ? -52.62 -71.83 18 1 THR B 90 ? ? -120.03 -74.71 19 1 HIS B 112 ? ? -61.30 92.20 20 1 TYR B 123 ? ? -175.42 130.30 21 1 PRO B 124 ? ? -64.34 -172.28 22 1 ASN B 134 ? ? 49.43 21.48 23 1 GLU B 138 ? ? -60.77 89.09 24 1 ASP B 152 ? ? -99.97 36.13 25 1 SER B 167 ? ? -63.12 67.98 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 150 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.070 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 B _pdbx_validate_polymer_linkage.auth_comp_id_1 PHE _pdbx_validate_polymer_linkage.auth_seq_id_1 31 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 B _pdbx_validate_polymer_linkage.auth_comp_id_2 HIS _pdbx_validate_polymer_linkage.auth_seq_id_2 32 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.18 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ARG 123 ? CG ? A ARG 119 CG 2 1 Y 0 A ARG 123 ? CD ? A ARG 119 CD 3 1 Y 0 A ARG 123 ? NE ? A ARG 119 NE 4 1 Y 0 A ARG 123 ? CZ ? A ARG 119 CZ 5 1 Y 0 A ARG 123 ? NH1 ? A ARG 119 NH1 6 1 Y 0 A ARG 123 ? NH2 ? A ARG 119 NH2 7 1 Y 0 B ASN 19 ? CG ? B ASN 15 CG 8 1 Y 0 B ASN 19 ? OD1 ? B ASN 15 OD1 9 1 Y 0 B ASN 19 ? ND2 ? B ASN 15 ND2 10 1 Y 0 B GLU 22 ? CG ? B GLU 18 CG 11 1 Y 0 B GLU 22 ? CD ? B GLU 18 CD 12 1 Y 0 B GLU 22 ? OE1 ? B GLU 18 OE1 13 1 Y 0 B GLU 22 ? OE2 ? B GLU 18 OE2 14 1 Y 0 B ARG 23 ? CG ? B ARG 19 CG 15 1 Y 0 B ARG 23 ? CD ? B ARG 19 CD 16 1 Y 0 B ARG 23 ? NE ? B ARG 19 NE 17 1 Y 0 B ARG 23 ? CZ ? B ARG 19 CZ 18 1 Y 0 B ARG 23 ? NH1 ? B ARG 19 NH1 19 1 Y 0 B ARG 23 ? NH2 ? B ARG 19 NH2 20 1 Y 0 B LYS 105 ? CG ? B LYS 101 CG 21 1 Y 0 B LYS 105 ? CD ? B LYS 101 CD 22 1 Y 0 B LYS 105 ? CE ? B LYS 101 CE 23 1 Y 0 B LYS 105 ? NZ ? B LYS 101 NZ 24 1 Y 0 B GLN 107 ? CG ? B GLN 103 CG 25 1 Y 0 B GLN 107 ? CD ? B GLN 103 CD 26 1 Y 0 B GLN 107 ? OE1 ? B GLN 103 OE1 27 1 Y 0 B GLN 107 ? NE2 ? B GLN 103 NE2 28 1 Y 0 B LEU 109 ? CG ? B LEU 105 CG 29 1 Y 0 B LEU 109 ? CD1 ? B LEU 105 CD1 30 1 Y 0 B LEU 109 ? CD2 ? B LEU 105 CD2 31 1 Y 0 B GLN 110 ? CG ? B GLN 106 CG 32 1 Y 0 B GLN 110 ? CD ? B GLN 106 CD 33 1 Y 0 B GLN 110 ? OE1 ? B GLN 106 OE1 34 1 Y 0 B GLN 110 ? NE2 ? B GLN 106 NE2 35 1 Y 0 B HIS 111 ? CG ? B HIS 107 CG 36 1 Y 0 B HIS 111 ? ND1 ? B HIS 107 ND1 37 1 Y 0 B HIS 111 ? CD2 ? B HIS 107 CD2 38 1 Y 0 B HIS 111 ? CE1 ? B HIS 107 CE1 39 1 Y 0 B HIS 111 ? NE2 ? B HIS 107 NE2 40 1 Y 0 B GLN 136 ? CG ? B GLN 132 CG 41 1 Y 0 B GLN 136 ? CD ? B GLN 132 CD 42 1 Y 0 B GLN 136 ? OE1 ? B GLN 132 OE1 43 1 Y 0 B GLN 136 ? NE2 ? B GLN 132 NE2 44 1 Y 0 B GLU 138 ? CG ? B GLU 134 CG 45 1 Y 0 B GLU 138 ? CD ? B GLU 134 CD 46 1 Y 0 B GLU 138 ? OE1 ? B GLU 134 OE1 47 1 Y 0 B GLU 138 ? OE2 ? B GLU 134 OE2 48 1 Y 0 B ARG 166 ? CG ? B ARG 162 CG 49 1 Y 0 B ARG 166 ? CD ? B ARG 162 CD 50 1 Y 0 B ARG 166 ? NE ? B ARG 162 NE 51 1 Y 0 B ARG 166 ? CZ ? B ARG 162 CZ 52 1 Y 0 B ARG 166 ? NH1 ? B ARG 162 NH1 53 1 Y 0 B ARG 166 ? NH2 ? B ARG 162 NH2 54 1 Y 0 B SER 167 ? OG ? B SER 163 OG 55 1 Y 0 B ARG 189 ? CG ? B ARG 185 CG 56 1 Y 0 B ARG 189 ? CD ? B ARG 185 CD 57 1 Y 0 B ARG 189 ? NE ? B ARG 185 NE 58 1 Y 0 B ARG 189 ? CZ ? B ARG 185 CZ 59 1 Y 0 B ARG 189 ? NH1 ? B ARG 185 NH1 60 1 Y 0 B ARG 189 ? NH2 ? B ARG 185 NH2 61 1 Y 0 B ARG 191 ? CG ? B ARG 187 CG 62 1 Y 0 B ARG 191 ? CD ? B ARG 187 CD 63 1 Y 0 B ARG 191 ? NE ? B ARG 187 NE 64 1 Y 0 B ARG 191 ? CZ ? B ARG 187 CZ 65 1 Y 0 B ARG 191 ? NH1 ? B ARG 187 NH1 66 1 Y 0 B ARG 191 ? NH2 ? B ARG 187 NH2 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DLH _pdbx_initial_refinement_model.details 'PDB ENTRY 1DLH' #