HEADER IMMUNE SYSTEM 03-MAR-98 1A6V TITLE B1-8 FV FRAGMENT COMPLEXED WITH A (4-HYDROXY-3-NITROPHENYL) ACETATE TITLE 2 COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: B1-8 FV (LIGHT CHAIN); COMPND 3 CHAIN: L, M, N; COMPND 4 FRAGMENT: FV FRAGMENT; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: B1-8 FV (HEAVY CHAIN); COMPND 8 CHAIN: H, I, J; COMPND 9 FRAGMENT: FV FRAGMENT; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: C57BL/6; SOURCE 6 CELL_LINE: J558L; SOURCE 7 ORGAN: TAIL; SOURCE 8 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 9 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM_CELL_LINE: J558L; SOURCE 12 EXPRESSION_SYSTEM_VECTOR: PEC-GAMMA3; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 16 ORGANISM_TAXID: 10090; SOURCE 17 STRAIN: C57BL/6; SOURCE 18 CELL_LINE: J558L; SOURCE 19 ORGAN: TAIL; SOURCE 20 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 23 EXPRESSION_SYSTEM_CELL_LINE: J558L; SOURCE 24 EXPRESSION_SYSTEM_VECTOR: PEC-GAMMA3 KEYWDS IMMUNOGLOBULIN, HAPTEN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.SIMON,K.HENRICK,M.HIRSHBERG,G.WINTER REVDAT 4 14-JUN-23 1A6V 1 REMARK SEQADV ATOM REVDAT 3 14-AUG-13 1A6V 1 HEADER HET HETATM KEYWDS REVDAT 3 2 1 LINK REMARK SITE VERSN REVDAT 2 24-FEB-09 1A6V 1 VERSN REVDAT 1 15-JUL-98 1A6V 0 JRNL AUTH T.SIMON,K.HENRICK,M.HIRSHBERG,G.WINTER JRNL TITL X-RAY STRUCTURES OF FV FRAGMENT AND ITS JRNL TITL 2 (4-HYDROXY-3-NITROPHENYL)ACETATE COMPLEX OF MURINE B1-8 JRNL TITL 3 ANTIBODY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.SIMON,K.RAJEWSKY REMARK 1 TITL A FUNCTIONAL ANTIBODY MUTANT WITH AN INSERTION IN THE REMARK 1 TITL 2 FRAMEWORK REGION 3 LOOP OF THE VH DOMAIN: IMPLICATIONS FOR REMARK 1 TITL 3 ANTIBODY ENGINEERING REMARK 1 REF PROTEIN ENG. V. 5 229 1992 REMARK 1 REFN ISSN 0269-2139 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 59954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.296 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.2960 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 478 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.012 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.040 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.010 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.148 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 1.800 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 22.500; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.400 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.100 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.900 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.300 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE HAS THREE MOLECULES PER REMARK 3 EQUIVALENT POSITION ARRANGED AS A TRANSLATION ALONG THE Z-AXIS REMARK 3 SUCH THAT OVERALL THE DIFFRACTION DATA SHOWS WEAK INTENSITIES REMARK 3 FOR HKL, L=2N AND THIS TRANSLATIONAL NON-CRYSTALLOGRAPHIC REMARK 3 SYMMETRY IS ON CLEARLY BROKEN BY THE DIFFERENT CONFORMATION OF REMARK 3 THE TAIL O HAPTEN LIGAND ADOPTED IN EACH OF THE THREE REMARK 3 INDEPENDENTLY DETERMINED MOLECULES. THERE ARE ALSO TWO REMARK 3 CONFORMATIONS FOUND FOR THE HAPTEN BOUND TO CHAINS L AND H. REMARK 4 REMARK 4 1A6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : AUG-95 REMARK 200 TEMPERATURE (KELVIN) : 269 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, AGROVATA/ROTAVATA REMARK 200 DATA SCALING SOFTWARE : AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 367775 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 9.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN USING AMMONIUM REMARK 280 SULPHATE AS PRECIPITANT REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.75550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.09500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.75550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.09500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: N, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 419 REMARK 465 SER H 420 REMARK 465 GLU M 110 REMARK 465 SER I 420 REMARK 465 GLU N 110 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN L 1 CB CG CD OE1 NE2 REMARK 470 ARG L 23 CG CD NE CZ NH1 NH2 REMARK 470 SER L 24 OG REMARK 470 LYS L 105 CG CD CE NZ REMARK 470 GLU L 110 CB CG CD OE1 OE2 REMARK 470 GLN N 1 CB CG CD OE1 NE2 REMARK 470 PRO N 58 CB CG CD REMARK 470 ASN N 96 CG OD1 ND2 REMARK 470 LYS J 313 CG CD CE NZ REMARK 470 SER J 404 OG REMARK 470 ASP J 408 CG OD1 OD2 REMARK 470 SER J 420 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR N 82 C THR N 82 O 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 43 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 ARG L 63 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG L 63 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ALA L 91 N - CA - CB ANGL. DEV. = 9.5 DEGREES REMARK 500 VAL H 318 CA - CB - CG1 ANGL. DEV. = 9.9 DEGREES REMARK 500 MET H 334 CG - SD - CE ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG H 340 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG H 343 C - N - CA ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG H 343 N - CA - CB ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG H 343 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG H 343 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG H 343 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 GLU H 346 N - CA - CB ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG H 350 CA - CB - CG ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG H 350 CG - CD - NE ANGL. DEV. = 13.0 DEGREES REMARK 500 ARG H 350 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 LYS H 359 CA - CB - CG ANGL. DEV. = 23.4 DEGREES REMARK 500 ASP H 373 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 SER H 388 N - CA - CB ANGL. DEV. = 9.9 DEGREES REMARK 500 GLU H 389 CA - C - O ANGL. DEV. = 14.0 DEGREES REMARK 500 ASP H 390 C - N - CA ANGL. DEV. = 29.6 DEGREES REMARK 500 ASP H 390 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 GLY H 403 N - CA - C ANGL. DEV. = 26.0 DEGREES REMARK 500 TYR H 406 CA - CB - CG ANGL. DEV. = 11.9 DEGREES REMARK 500 ASP H 408 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ALA M 2 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 GLU M 16 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 GLU M 16 OE1 - CD - OE2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG M 23 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG M 23 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP M 43 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 LEU M 45 CB - CA - C ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG M 56 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG M 56 CD - NE - CZ ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG M 56 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG M 63 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 GLN M 81 CB - CG - CD ANGL. DEV. = 15.9 DEGREES REMARK 500 CYS M 90 N - CA - CB ANGL. DEV. = 9.5 DEGREES REMARK 500 ALA M 91 N - CA - CB ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG I 340 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG I 340 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG I 350 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 GLU I 389 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 TYR I 395 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP I 408 CB - CG - OD1 ANGL. DEV. = 9.3 DEGREES REMARK 500 THR I 415 CA - CB - CG2 ANGL. DEV. = 9.2 DEGREES REMARK 500 VAL N 4 CA - CB - CG1 ANGL. DEV. = 9.6 DEGREES REMARK 500 VAL N 18 N - CA - CB ANGL. DEV. = 13.9 DEGREES REMARK 500 LEU N 20 CB - CA - C ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG N 23 CD - NE - CZ ANGL. DEV. = 11.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 90 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 43 73.17 72.65 REMARK 500 HIS L 44 29.28 41.10 REMARK 500 THR L 53 -54.73 61.24 REMARK 500 SER L 67 -171.74 170.16 REMARK 500 ALA L 80 121.60 -39.74 REMARK 500 ALA L 86 178.04 175.76 REMARK 500 SER L 95 -98.61 34.97 REMARK 500 LEU L 109 88.00 60.87 REMARK 500 PHE H 329 -77.86 -38.61 REMARK 500 ARG H 340 110.55 174.66 REMARK 500 PRO H 341 137.38 -23.50 REMARK 500 ARG H 343 -60.63 148.80 REMARK 500 LYS H 367 -76.85 -119.77 REMARK 500 SER H 384 -88.59 -67.35 REMARK 500 LEU H 386 91.68 -61.69 REMARK 500 SER H 388 58.08 119.81 REMARK 500 ASP H 390 -21.35 -30.54 REMARK 500 SER H 391 91.14 -59.74 REMARK 500 TYR H 402 41.16 -99.89 REMARK 500 TYR M 34 57.07 37.52 REMARK 500 PRO M 42 115.56 -20.61 REMARK 500 ASP M 43 59.92 70.50 REMARK 500 HIS M 44 73.51 31.36 REMARK 500 THR M 53 -49.56 78.82 REMARK 500 ASN M 54 19.21 -142.52 REMARK 500 ALA M 62 -7.85 -39.82 REMARK 500 ALA M 86 -170.60 175.22 REMARK 500 TYR M 94 55.78 -116.23 REMARK 500 SER M 95 -8.22 65.39 REMARK 500 ASN M 96 4.37 -166.78 REMARK 500 ARG I 343 -93.10 -21.14 REMARK 500 SER I 366 -7.77 163.55 REMARK 500 SER I 385 52.45 35.02 REMARK 500 SER I 404 -16.18 -46.50 REMARK 500 ALA N 2 107.39 -173.57 REMARK 500 THR N 12 -158.68 -111.23 REMARK 500 PRO N 14 130.67 -35.85 REMARK 500 THR N 30 -154.12 -92.82 REMARK 500 SER N 32 2.31 -65.96 REMARK 500 TYR N 34 89.29 16.07 REMARK 500 ASP N 43 32.00 100.60 REMARK 500 THR N 53 -44.58 66.37 REMARK 500 ALA N 57 121.33 -23.81 REMARK 500 PRO N 58 136.46 -33.88 REMARK 500 VAL N 60 123.49 -39.24 REMARK 500 ALA N 62 -0.49 -53.38 REMARK 500 ALA N 80 140.49 -27.91 REMARK 500 THR N 82 -19.17 -40.33 REMARK 500 ALA N 86 -166.39 176.78 REMARK 500 SER N 95 -27.60 49.32 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: NULL DBREF 1A6V L 1 109 UNP P01724 LV1B_MOUSE 20 128 DBREF 1A6V H 301 420 UNP P01751 HV07_MOUSE 20 139 DBREF 1A6V M 1 109 UNP P01724 LV1B_MOUSE 20 128 DBREF 1A6V I 301 420 UNP P01751 HV07_MOUSE 20 139 DBREF 1A6V N 1 109 UNP P01724 LV1B_MOUSE 20 128 DBREF 1A6V J 301 420 UNP P01751 HV07_MOUSE 20 139 SEQADV 1A6V GLU L 40 UNP P01724 GLN 59 VARIANT SEQADV 1A6V VAL H 416 UNP P01751 LEU 135 VARIANT SEQADV 1A6V GLU M 40 UNP P01724 GLN 59 VARIANT SEQADV 1A6V VAL I 416 UNP P01751 LEU 135 VARIANT SEQADV 1A6V GLU N 40 UNP P01724 GLN 59 VARIANT SEQADV 1A6V VAL J 416 UNP P01751 LEU 135 VARIANT SEQRES 1 L 110 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 L 110 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 L 110 GLY ALA VAL THR THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 L 110 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY GLY SEQRES 5 L 110 THR ASN ASN ARG ALA PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 L 110 GLY SER LEU ILE GLY ASN LYS ALA ALA LEU THR ILE THR SEQRES 7 L 110 GLY ALA GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 L 110 LEU TRP TYR SER ASN HIS TRP VAL PHE GLY GLY GLY THR SEQRES 9 L 110 LYS LEU THR VAL LEU GLU SEQRES 1 H 120 GLN VAL GLN LEU GLN GLN PRO GLY ALA GLU LEU VAL LYS SEQRES 2 H 120 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 120 TYR THR PHE THR SER TYR TRP MET HIS TRP VAL LYS GLN SEQRES 4 H 120 ARG PRO GLY ARG GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 H 120 PRO ASN SER GLY GLY THR LYS TYR ASN GLU LYS PHE LYS SEQRES 6 H 120 SER LYS ALA THR LEU THR VAL ASP LYS PRO SER SER THR SEQRES 7 H 120 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 120 ALA VAL TYR TYR CYS ALA ARG TYR ASP TYR TYR GLY SER SEQRES 9 H 120 SER TYR PHE ASP TYR TRP GLY GLN GLY THR THR VAL THR SEQRES 10 H 120 VAL SER SER SEQRES 1 M 110 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 M 110 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 M 110 GLY ALA VAL THR THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 M 110 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY GLY SEQRES 5 M 110 THR ASN ASN ARG ALA PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 M 110 GLY SER LEU ILE GLY ASN LYS ALA ALA LEU THR ILE THR SEQRES 7 M 110 GLY ALA GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 M 110 LEU TRP TYR SER ASN HIS TRP VAL PHE GLY GLY GLY THR SEQRES 9 M 110 LYS LEU THR VAL LEU GLU SEQRES 1 I 120 GLN VAL GLN LEU GLN GLN PRO GLY ALA GLU LEU VAL LYS SEQRES 2 I 120 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 I 120 TYR THR PHE THR SER TYR TRP MET HIS TRP VAL LYS GLN SEQRES 4 I 120 ARG PRO GLY ARG GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 I 120 PRO ASN SER GLY GLY THR LYS TYR ASN GLU LYS PHE LYS SEQRES 6 I 120 SER LYS ALA THR LEU THR VAL ASP LYS PRO SER SER THR SEQRES 7 I 120 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 I 120 ALA VAL TYR TYR CYS ALA ARG TYR ASP TYR TYR GLY SER SEQRES 9 I 120 SER TYR PHE ASP TYR TRP GLY GLN GLY THR THR VAL THR SEQRES 10 I 120 VAL SER SER SEQRES 1 N 110 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 N 110 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 N 110 GLY ALA VAL THR THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 N 110 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY GLY SEQRES 5 N 110 THR ASN ASN ARG ALA PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 N 110 GLY SER LEU ILE GLY ASN LYS ALA ALA LEU THR ILE THR SEQRES 7 N 110 GLY ALA GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 N 110 LEU TRP TYR SER ASN HIS TRP VAL PHE GLY GLY GLY THR SEQRES 9 N 110 LYS LEU THR VAL LEU GLU SEQRES 1 J 120 GLN VAL GLN LEU GLN GLN PRO GLY ALA GLU LEU VAL LYS SEQRES 2 J 120 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 J 120 TYR THR PHE THR SER TYR TRP MET HIS TRP VAL LYS GLN SEQRES 4 J 120 ARG PRO GLY ARG GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 J 120 PRO ASN SER GLY GLY THR LYS TYR ASN GLU LYS PHE LYS SEQRES 6 J 120 SER LYS ALA THR LEU THR VAL ASP LYS PRO SER SER THR SEQRES 7 J 120 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 J 120 ALA VAL TYR TYR CYS ALA ARG TYR ASP TYR TYR GLY SER SEQRES 9 J 120 SER TYR PHE ASP TYR TRP GLY GLN GLY THR THR VAL THR SEQRES 10 J 120 VAL SER SER HET NPC H 430 44 HET NPC I 430 22 HET NPC J 430 22 HETNAM NPC 4-HYDROXY-3-NITROPHENYLACETYL-EPSILON-AMINOCAPROIC ACID HETNAM 2 NPC ANION FORMUL 7 NPC 3(C14 H17 N2 O6 1-) FORMUL 10 HOH *478(H2 O) HELIX 1 1 THR L 82 ASP L 84 5 3 HELIX 2 2 PHE H 329 SER H 331 5 3 HELIX 3 3 GLU H 362 PHE H 364 5 3 HELIX 4 4 THR M 31 ASN M 33 5 3 HELIX 5 5 GLU I 362 PHE I 364 5 3 HELIX 6 6 SER J 388 ASP J 390 5 3 SHEET 1 A 4 VAL L 4 GLN L 6 0 SHEET 2 A 4 THR L 17 SER L 24 -1 N ARG L 23 O THR L 5 SHEET 3 A 4 LYS L 72 THR L 78 -1 N ILE L 77 O VAL L 18 SHEET 4 A 4 PHE L 64 ILE L 69 -1 N ILE L 69 O LYS L 72 SHEET 1 B 5 ALA L 9 THR L 11 0 SHEET 2 B 5 THR L 104 THR L 107 1 N LYS L 105 O LEU L 10 SHEET 3 B 5 ALA L 86 ALA L 91 -1 N TYR L 88 O THR L 104 SHEET 4 B 5 ASN L 36 LYS L 41 -1 N GLU L 40 O ILE L 87 SHEET 5 B 5 LEU L 45 ILE L 50 -1 N ILE L 50 O TRP L 37 SHEET 1 C 2 ALA L 91 TYR L 94 0 SHEET 2 C 2 HIS L 97 PHE L 100 -1 N VAL L 99 O LEU L 92 SHEET 1 D 4 GLN H 303 GLN H 305 0 SHEET 2 D 4 VAL H 318 SER H 325 -1 N SER H 325 O GLN H 303 SHEET 3 D 4 THR H 378 LEU H 383 -1 N LEU H 383 O VAL H 318 SHEET 4 D 4 ALA H 368 ASP H 373 -1 N ASP H 373 O THR H 378 SHEET 1 E 6 ALA H 309 LEU H 311 0 SHEET 2 E 6 THR H 414 THR H 417 1 N THR H 415 O GLU H 310 SHEET 3 E 6 ALA H 392 TYR H 399 -1 N TYR H 394 O THR H 414 SHEET 4 E 6 TRP H 333 GLN H 339 -1 N GLN H 339 O VAL H 393 SHEET 5 E 6 GLU H 346 ASP H 352 -1 N ILE H 351 O MET H 334 SHEET 6 E 6 GLY H 357 TYR H 360 -1 N LYS H 359 O ARG H 350 SHEET 1 F 5 ALA M 9 SER M 13 0 SHEET 2 F 5 THR M 104 LEU M 109 1 N LYS M 105 O LEU M 10 SHEET 3 F 5 ALA M 86 ALA M 91 -1 N TYR M 88 O THR M 104 SHEET 4 F 5 ASN M 36 LYS M 41 -1 N GLU M 40 O ILE M 87 SHEET 5 F 5 LEU M 45 ILE M 50 -1 N ILE M 50 O TRP M 37 SHEET 1 G 3 VAL M 18 CYS M 22 0 SHEET 2 G 3 LYS M 72 ILE M 77 -1 N ILE M 77 O VAL M 18 SHEET 3 G 3 PHE M 64 ILE M 69 -1 N ILE M 69 O LYS M 72 SHEET 1 H 2 ALA M 91 TRP M 93 0 SHEET 2 H 2 TRP M 98 PHE M 100 -1 N VAL M 99 O LEU M 92 SHEET 1 I 4 GLN I 303 GLN I 305 0 SHEET 2 I 4 VAL I 318 SER I 325 -1 N SER I 325 O GLN I 303 SHEET 3 I 4 THR I 378 LEU I 383 -1 N LEU I 383 O VAL I 318 SHEET 4 I 4 ALA I 368 ASP I 373 -1 N ASP I 373 O THR I 378 SHEET 1 J 6 ALA I 309 VAL I 312 0 SHEET 2 J 6 THR I 414 VAL I 418 1 N THR I 415 O GLU I 310 SHEET 3 J 6 ALA I 392 TYR I 399 -1 N TYR I 394 O THR I 414 SHEET 4 J 6 TRP I 333 GLN I 339 -1 N GLN I 339 O VAL I 393 SHEET 5 J 6 LEU I 345 ASP I 352 -1 N ILE I 351 O MET I 334 SHEET 6 J 6 THR I 358 TYR I 360 -1 N LYS I 359 O ARG I 350 SHEET 1 K 2 ALA I 397 TYR I 399 0 SHEET 2 K 2 PHE I 407 TRP I 410 -1 N TYR I 409 O ARG I 398 SHEET 1 L 5 ALA N 9 SER N 13 0 SHEET 2 L 5 THR N 104 LEU N 109 1 N LYS N 105 O LEU N 10 SHEET 3 L 5 ALA N 86 ALA N 91 -1 N TYR N 88 O THR N 104 SHEET 4 L 5 ASN N 36 LYS N 41 -1 N GLU N 40 O ILE N 87 SHEET 5 L 5 LEU N 45 ILE N 50 -1 N ILE N 50 O TRP N 37 SHEET 1 M 3 VAL N 18 ARG N 23 0 SHEET 2 M 3 LYS N 72 ILE N 77 -1 N ILE N 77 O VAL N 18 SHEET 3 M 3 PHE N 64 ILE N 69 -1 N ILE N 69 O LYS N 72 SHEET 1 N 2 ALA N 91 TYR N 94 0 SHEET 2 N 2 HIS N 97 PHE N 100 -1 N VAL N 99 O LEU N 92 SHEET 1 O 2 GLN J 303 GLN J 306 0 SHEET 2 O 2 CYS J 322 SER J 325 -1 N SER J 325 O GLN J 303 SHEET 1 P 5 ALA J 309 LEU J 311 0 SHEET 2 P 5 THR J 414 THR J 417 1 N THR J 415 O GLU J 310 SHEET 3 P 5 ALA J 392 TYR J 399 -1 N TYR J 394 O THR J 414 SHEET 4 P 5 TRP J 333 GLN J 339 -1 N GLN J 339 O VAL J 393 SHEET 5 P 5 LEU J 345 ARG J 350 -1 N GLY J 349 O TRP J 336 SHEET 1 Q 2 ALA J 397 TYR J 399 0 SHEET 2 Q 2 PHE J 407 TRP J 410 -1 N TYR J 409 O ARG J 398 SSBOND 1 CYS L 22 CYS L 90 1555 1555 2.02 SSBOND 2 CYS H 322 CYS H 396 1555 1555 2.05 SSBOND 3 CYS M 22 CYS M 90 1555 1555 2.02 SSBOND 4 CYS I 322 CYS I 396 1555 1555 2.03 SSBOND 5 CYS N 22 CYS N 90 1555 1555 2.05 SSBOND 6 CYS J 322 CYS J 396 1555 1555 2.04 SITE 1 AC1 10 HOH H 73 TRP H 333 HIS H 335 ARG H 350 SITE 2 AC1 10 LYS H 359 TYR H 401 SER H 405 TYR L 34 SITE 3 AC1 10 TRP L 93 TRP L 98 SITE 1 AC2 11 HOH H 73 HOH H 141 TRP H 333 HIS H 335 SITE 2 AC2 11 ARG H 350 LYS H 359 TYR H 399 TYR H 401 SITE 3 AC2 11 NPC H 430 TRP L 93 TRP L 98 SITE 1 AC3 13 TRP I 333 HIS I 335 ARG I 350 LYS I 359 SITE 2 AC3 13 TYR I 399 TYR I 401 TYR I 402 SER I 405 SITE 3 AC3 13 HOH I 512 HOH I 513 TYR M 34 TRP M 93 SITE 4 AC3 13 TRP M 98 SITE 1 AC4 12 TRP J 333 HIS J 335 ARG J 350 LYS J 359 SITE 2 AC4 12 TYR J 399 TYR J 401 HOH J 437 HOH J 514 SITE 3 AC4 12 THR N 31 SER N 32 TYR N 34 TRP N 93 CRYST1 71.760 86.190 111.511 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011602 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008968 0.00000 MTRIX1 1 1.000000 -0.000240 0.002860 -0.21008 1 MTRIX2 1 0.000190 0.999840 0.017720 -1.86478 1 MTRIX3 1 -0.002860 -0.017720 0.999840 -36.92922 1 MTRIX1 2 0.999910 -0.013020 0.003260 -0.03115 1 MTRIX2 2 0.013080 0.999720 -0.019690 2.02331 1 MTRIX3 2 -0.003000 0.019730 0.999800 -37.68118 1 MTRIX1 3 0.999990 0.004500 0.000730 -0.17386 1 MTRIX2 3 -0.004540 0.998280 0.058440 -5.87130 1 MTRIX3 3 -0.000460 -0.058440 0.998290 -72.93678 1 MTRIX1 4 0.999940 -0.009680 -0.005540 0.71513 1 MTRIX2 4 0.009550 0.999690 -0.022940 1.84498 1 MTRIX3 4 0.005760 0.022890 0.999720 -74.76064 1 MTRIX1 5 0.999990 0.004870 -0.002210 -0.04107 1 MTRIX2 5 -0.004770 0.999130 0.041340 -2.53210 1 MTRIX3 5 0.002410 -0.041330 0.999140 -36.09732 1 MTRIX1 6 0.999960 0.003610 -0.008590 0.40194 1 MTRIX2 6 -0.003640 0.999990 -0.003230 -0.30156 1 MTRIX3 6 0.008570 0.003260 0.999960 -37.08856 1