data_1A6Y # _entry.id 1A6Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1A6Y pdb_00001a6y 10.2210/pdb1a6y/pdb RCSB PD0008 ? ? WWPDB D_1000170469 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1A6Y _pdbx_database_status.recvd_initial_deposition_date 1998-03-04 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, Q.' 1 'Khorasanizadeh, S.' 2 'Rastinejad, F.' 3 # _citation.id primary _citation.title 'Structural elements of an orphan nuclear receptor-DNA complex.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 1 _citation.page_first 849 _citation.page_last 861 _citation.year 1998 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9660968 _citation.pdbx_database_id_DOI '10.1016/S1097-2765(00)80084-2' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, Q.' 1 ? primary 'Khorasanizadeh, S.' 2 ? primary 'Miyoshi, Y.' 3 ? primary 'Lazar, M.A.' 4 ? primary 'Rastinejad, F.' 5 ? # _cell.entry_id 1A6Y _cell.length_a 38.670 _cell.length_b 45.690 _cell.length_c 47.950 _cell.angle_alpha 75.16 _cell.angle_beta 80.64 _cell.angle_gamma 85.58 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A6Y _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting triclinic _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*(5IT)P*AP*GP*GP*TP*CP*AP*G)-3') ; 6254.863 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3') ; 6124.965 1 ? ? ? ? 3 polymer man 'ORPHAN NUCLEAR RECEPTOR NR1D1' 10902.009 2 ? H116L 'DNA BINDING DOMAIN CONSISTS OF RESIDUES A 101 TO A 164, B 101 TO B 164' ? 4 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 5 water nat water 18.015 234 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'THYROID HORMONE RECEPTOR-RELATED PROTEIN REV-ERBA-ALPHA, REVERB, REVERBA ORPHAN NUCLEAR RECEPTOR, V-ERBA RELATED PROTEIN EAR-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes ;(DC)(DA)(DA)(DC)(DT)(DA)(DG)(DG)(DT)(DC)(DA)(DC)(5IU)(DA)(DG)(DG)(DT)(DC)(DA) (DG) ; CAACTAGGTCACUAGGTCAG C ? 2 polydeoxyribonucleotide no no '(DC)(DT)(DG)(DA)(DC)(DC)(DT)(DA)(DG)(DT)(DG)(DA)(DC)(DC)(DT)(DA)(DG)(DT)(DT)(DG)' CTGACCTAGTGACCTAGTTG D ? 3 'polypeptide(L)' no no ;TKLNGMVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDA VRFGRIPKREKQRM ; ;TKLNGMVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDA VRFGRIPKREKQRM ; A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DA n 1 4 DC n 1 5 DT n 1 6 DA n 1 7 DG n 1 8 DG n 1 9 DT n 1 10 DC n 1 11 DA n 1 12 DC n 1 13 5IU n 1 14 DA n 1 15 DG n 1 16 DG n 1 17 DT n 1 18 DC n 1 19 DA n 1 20 DG n 2 1 DC n 2 2 DT n 2 3 DG n 2 4 DA n 2 5 DC n 2 6 DC n 2 7 DT n 2 8 DA n 2 9 DG n 2 10 DT n 2 11 DG n 2 12 DA n 2 13 DC n 2 14 DC n 2 15 DT n 2 16 DA n 2 17 DG n 2 18 DT n 2 19 DT n 2 20 DG n 3 1 THR n 3 2 LYS n 3 3 LEU n 3 4 ASN n 3 5 GLY n 3 6 MET n 3 7 VAL n 3 8 LEU n 3 9 LEU n 3 10 CYS n 3 11 LYS n 3 12 VAL n 3 13 CYS n 3 14 GLY n 3 15 ASP n 3 16 VAL n 3 17 ALA n 3 18 SER n 3 19 GLY n 3 20 PHE n 3 21 HIS n 3 22 TYR n 3 23 GLY n 3 24 VAL n 3 25 LEU n 3 26 ALA n 3 27 CYS n 3 28 GLU n 3 29 GLY n 3 30 CYS n 3 31 LYS n 3 32 GLY n 3 33 PHE n 3 34 PHE n 3 35 ARG n 3 36 ARG n 3 37 SER n 3 38 ILE n 3 39 GLN n 3 40 GLN n 3 41 ASN n 3 42 ILE n 3 43 GLN n 3 44 TYR n 3 45 LYS n 3 46 ARG n 3 47 CYS n 3 48 LEU n 3 49 LYS n 3 50 ASN n 3 51 GLU n 3 52 ASN n 3 53 CYS n 3 54 SER n 3 55 ILE n 3 56 VAL n 3 57 ARG n 3 58 ILE n 3 59 ASN n 3 60 ARG n 3 61 ASN n 3 62 ARG n 3 63 CYS n 3 64 GLN n 3 65 GLN n 3 66 CYS n 3 67 ARG n 3 68 PHE n 3 69 LYS n 3 70 LYS n 3 71 CYS n 3 72 LEU n 3 73 SER n 3 74 VAL n 3 75 GLY n 3 76 MET n 3 77 SER n 3 78 ARG n 3 79 ASP n 3 80 ALA n 3 81 VAL n 3 82 ARG n 3 83 PHE n 3 84 GLY n 3 85 ARG n 3 86 ILE n 3 87 PRO n 3 88 LYS n 3 89 ARG n 3 90 GLU n 3 91 LYS n 3 92 GLN n 3 93 ARG n 3 94 MET n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP NR1D1_HUMAN P20393 3 123 ? ? 2 PDB 1A6Y 1A6Y 1 ? ? ? 3 PDB 1A6Y 1A6Y 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1A6Y A 1 ? 94 ? P20393 123 ? 216 ? 92 184 2 1 1A6Y B 1 ? 94 ? P20393 123 ? 216 ? 92 184 3 2 1A6Y C 1 ? 20 ? 1A6Y 600 ? 619 ? 600 619 4 3 1A6Y D 1 ? 20 ? 1A6Y 621 ? 640 ? 621 640 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1A6Y LEU A 25 ? UNP P20393 HIS 147 'cloning artifact' 116 1 2 1A6Y LEU B 25 ? UNP P20393 HIS 147 'cloning artifact' 116 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5IU 'DNA linking' n "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 I N2 O8 P' 434.078 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 1A6Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_percent_sol 53.4 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;PROTEIN AND DNA COMPLEX WAS CRYSTALLIZED FROM 25-30% PEG 8000, 5 MM MGCL2, 400 MM NACL2, 100 MM TRIS, PH 7.5., VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 NACL ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 TRIS ? ? ? 1 4 1 'PEG 8000' ? ? ? 1 5 2 'PEG 8000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-12-15 _diffrn_detector.details NONE # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1A6Y _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.4 _reflns.d_resolution_high 2.3 _reflns.number_obs 13482 _reflns.number_all ? _reflns.percent_possible_obs 97.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.088 _reflns.pdbx_netI_over_sigmaI 15.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 94 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.492 _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1A6Y _refine.ls_number_reflns_obs 10614 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.001 _refine.ls_d_res_low 6.0 _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs 97.2 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1921 _refine.ls_R_factor_R_free 0.288 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 674 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 31.1 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'THERE IS AN INSERT GLN 133A IN BOTH CHAIN A AND B' _refine.pdbx_starting_model 'PDB ENTRY 2NLL (TR PORTION)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1282 _refine_hist.pdbx_number_atoms_nucleic_acid 813 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 234 _refine_hist.number_atoms_total 2334 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low 6.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.805 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 22.08 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.995 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.3 _refine_ls_shell.d_res_low 2.4 _refine_ls_shell.number_reflns_R_work 966 _refine_ls_shell.R_factor_R_work 0.2864 _refine_ls_shell.percent_reflns_obs 94.1 _refine_ls_shell.R_factor_R_free 0.313 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 4.6 _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARAMXX4.CPX TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 PARAM11X.DNA TOPH11I.DNA 'X-RAY DIFFRACTION' 3 PARHCSDX.PRO ? 'X-RAY DIFFRACTION' # _struct.entry_id 1A6Y _struct.title 'REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1A6Y _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'ORPHAN RECEPTOR, NUCLEAR RECEPTOR, DNA-BINDING, REVERB, REV-ERB, TRANSCRIPTION REGULATION, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU C 28 ? ILE C 38 ? GLU A 119 ILE A 129 1 ? 11 HELX_P HELX_P2 2 GLN C 64 ? SER C 73 ? GLN A 154 SER A 163 1 ? 10 HELX_P HELX_P3 3 GLU D 28 ? ILE D 38 ? GLU B 119 ILE B 129 1 ? 11 HELX_P HELX_P4 4 GLN D 64 ? VAL D 74 ? GLN B 154 VAL B 164 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 12 "O3'" ? ? ? 1_555 A 5IU 13 P ? ? C DC 611 C 5IU 612 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale2 covale both ? A 5IU 13 "O3'" ? ? ? 1_555 A DA 14 P ? ? C 5IU 612 C DA 613 1_555 ? ? ? ? ? ? ? 1.618 ? ? metalc1 metalc ? ? C CYS 10 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 101 A ZN 550 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc2 metalc ? ? C CYS 13 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 104 A ZN 550 1_555 ? ? ? ? ? ? ? 2.406 ? ? metalc3 metalc ? ? C CYS 27 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 118 A ZN 550 1_555 ? ? ? ? ? ? ? 2.315 ? ? metalc4 metalc ? ? C CYS 30 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 121 A ZN 550 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc5 metalc ? ? C CYS 47 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 137 A ZN 551 1_555 ? ? ? ? ? ? ? 2.252 ? ? metalc6 metalc ? ? C CYS 53 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 143 A ZN 551 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc7 metalc ? ? C CYS 63 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 153 A ZN 551 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc8 metalc ? ? C CYS 66 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 156 A ZN 551 1_555 ? ? ? ? ? ? ? 2.400 ? ? metalc9 metalc ? ? D CYS 10 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 101 B ZN 450 1_555 ? ? ? ? ? ? ? 2.214 ? ? metalc10 metalc ? ? D CYS 13 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 104 B ZN 450 1_555 ? ? ? ? ? ? ? 2.351 ? ? metalc11 metalc ? ? D CYS 27 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 118 B ZN 450 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc12 metalc ? ? D CYS 30 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 121 B ZN 450 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc13 metalc ? ? D CYS 47 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 137 B ZN 451 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc14 metalc ? ? D CYS 53 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 143 B ZN 451 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc15 metalc ? ? D CYS 63 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 153 B ZN 451 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc16 metalc ? ? D CYS 66 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 156 B ZN 451 1_555 ? ? ? ? ? ? ? 2.315 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 20 N1 ? ? C DC 600 D DG 640 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 20 O6 ? ? C DC 600 D DG 640 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 20 N2 ? ? C DC 600 D DG 640 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 19 N3 ? ? C DA 601 D DT 639 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 19 O4 ? ? C DA 601 D DT 639 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 18 N3 ? ? C DA 602 D DT 638 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 18 O4 ? ? C DA 602 D DT 638 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 17 N1 ? ? C DC 603 D DG 637 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 17 O6 ? ? C DC 603 D DG 637 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 17 N2 ? ? C DC 603 D DG 637 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 16 N1 ? ? C DT 604 D DA 636 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 16 N6 ? ? C DT 604 D DA 636 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 15 N3 ? ? C DA 605 D DT 635 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog14 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 14 N3 ? ? C DG 606 D DC 634 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 14 O2 ? ? C DG 606 D DC 634 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 14 N4 ? ? C DG 606 D DC 634 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 13 N3 ? ? C DG 607 D DC 633 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog18 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 12 N1 ? ? C DT 608 D DA 632 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 12 N6 ? ? C DT 608 D DA 632 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 11 N1 ? ? C DC 609 D DG 631 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 11 O6 ? ? C DC 609 D DG 631 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 11 N2 ? ? C DC 609 D DG 631 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 10 N3 ? ? C DA 610 D DT 630 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 10 O4 ? ? C DA 610 D DT 630 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 9 N1 ? ? C DC 611 D DG 629 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 9 O6 ? ? C DC 611 D DG 629 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 9 N2 ? ? C DC 611 D DG 629 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A 5IU 13 N3 ? ? ? 1_555 B DA 8 N1 ? ? C 5IU 612 D DA 628 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A 5IU 13 O4 ? ? ? 1_555 B DA 8 N6 ? ? C 5IU 612 D DA 628 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 7 N3 ? ? C DA 613 D DT 627 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 7 O4 ? ? C DA 613 D DT 627 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 6 N3 ? ? C DG 614 D DC 626 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 6 O2 ? ? C DG 614 D DC 626 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 6 N4 ? ? C DG 614 D DC 626 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 16 N1 ? ? ? 1_555 B DC 5 N3 ? ? C DG 615 D DC 625 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 16 N2 ? ? ? 1_555 B DC 5 O2 ? ? C DG 615 D DC 625 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 16 O6 ? ? ? 1_555 B DC 5 N4 ? ? C DG 615 D DC 625 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DT 17 N3 ? ? ? 1_555 B DA 4 N1 ? ? C DT 616 D DA 624 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DT 17 O4 ? ? ? 1_555 B DA 4 N6 ? ? C DT 616 D DA 624 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 3 N1 ? ? C DC 617 D DG 623 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 3 O6 ? ? C DC 617 D DG 623 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 3 N2 ? ? C DC 617 D DG 623 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DA 19 N1 ? ? ? 1_555 B DT 2 N3 ? ? C DA 618 D DT 622 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DA 19 N6 ? ? ? 1_555 B DT 2 O4 ? ? C DA 618 D DT 622 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DG 20 N1 ? ? ? 1_555 B DC 1 N3 ? ? C DG 619 D DC 621 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DG 20 N2 ? ? ? 1_555 B DC 1 O2 ? ? C DG 619 D DC 621 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DG 20 O6 ? ? ? 1_555 B DC 1 N4 ? ? C DG 619 D DC 621 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY C 19 ? HIS C 21 ? GLY A 110 HIS A 112 A 2 VAL C 24 ? ALA C 26 ? VAL A 115 ALA A 117 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id O _pdbx_struct_sheet_hbond.range_1_label_comp_id GLY _pdbx_struct_sheet_hbond.range_1_label_asym_id C _pdbx_struct_sheet_hbond.range_1_label_seq_id 19 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id O _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLY _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 110 _pdbx_struct_sheet_hbond.range_2_label_atom_id N _pdbx_struct_sheet_hbond.range_2_label_comp_id ALA _pdbx_struct_sheet_hbond.range_2_label_asym_id C _pdbx_struct_sheet_hbond.range_2_label_seq_id 26 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id N _pdbx_struct_sheet_hbond.range_2_auth_comp_id ALA _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 117 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 550 ? 4 'BINDING SITE FOR RESIDUE ZN A 550' AC2 Software A ZN 551 ? 4 'BINDING SITE FOR RESIDUE ZN A 551' AC3 Software B ZN 450 ? 4 'BINDING SITE FOR RESIDUE ZN B 450' AC4 Software B ZN 451 ? 4 'BINDING SITE FOR RESIDUE ZN B 451' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS C 10 ? CYS A 101 . ? 1_555 ? 2 AC1 4 CYS C 13 ? CYS A 104 . ? 1_555 ? 3 AC1 4 CYS C 27 ? CYS A 118 . ? 1_555 ? 4 AC1 4 CYS C 30 ? CYS A 121 . ? 1_555 ? 5 AC2 4 CYS C 47 ? CYS A 137 . ? 1_555 ? 6 AC2 4 CYS C 53 ? CYS A 143 . ? 1_555 ? 7 AC2 4 CYS C 63 ? CYS A 153 . ? 1_555 ? 8 AC2 4 CYS C 66 ? CYS A 156 . ? 1_555 ? 9 AC3 4 CYS D 10 ? CYS B 101 . ? 1_555 ? 10 AC3 4 CYS D 13 ? CYS B 104 . ? 1_555 ? 11 AC3 4 CYS D 27 ? CYS B 118 . ? 1_555 ? 12 AC3 4 CYS D 30 ? CYS B 121 . ? 1_555 ? 13 AC4 4 CYS D 47 ? CYS B 137 . ? 1_555 ? 14 AC4 4 CYS D 53 ? CYS B 143 . ? 1_555 ? 15 AC4 4 CYS D 63 ? CYS B 153 . ? 1_555 ? 16 AC4 4 CYS D 66 ? CYS B 156 . ? 1_555 ? # _database_PDB_matrix.entry_id 1A6Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1A6Y _atom_sites.fract_transf_matrix[1][1] 0.025860 _atom_sites.fract_transf_matrix[1][2] -0.001999 _atom_sites.fract_transf_matrix[1][3] -0.003889 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021952 _atom_sites.fract_transf_matrix[2][3] -0.005610 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021816 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 600 600 DC C C . n A 1 2 DA 2 601 601 DA A C . n A 1 3 DA 3 602 602 DA A C . n A 1 4 DC 4 603 603 DC C C . n A 1 5 DT 5 604 604 DT T C . n A 1 6 DA 6 605 605 DA A C . n A 1 7 DG 7 606 606 DG G C . n A 1 8 DG 8 607 607 DG G C . n A 1 9 DT 9 608 608 DT T C . n A 1 10 DC 10 609 609 DC C C . n A 1 11 DA 11 610 610 DA A C . n A 1 12 DC 12 611 611 DC C C . n A 1 13 5IU 13 612 612 5IU +U C . n A 1 14 DA 14 613 613 DA A C . n A 1 15 DG 15 614 614 DG G C . n A 1 16 DG 16 615 615 DG G C . n A 1 17 DT 17 616 616 DT T C . n A 1 18 DC 18 617 617 DC C C . n A 1 19 DA 19 618 618 DA A C . n A 1 20 DG 20 619 619 DG G C . n B 2 1 DC 1 621 621 DC C D . n B 2 2 DT 2 622 622 DT T D . n B 2 3 DG 3 623 623 DG G D . n B 2 4 DA 4 624 624 DA A D . n B 2 5 DC 5 625 625 DC C D . n B 2 6 DC 6 626 626 DC C D . n B 2 7 DT 7 627 627 DT T D . n B 2 8 DA 8 628 628 DA A D . n B 2 9 DG 9 629 629 DG G D . n B 2 10 DT 10 630 630 DT T D . n B 2 11 DG 11 631 631 DG G D . n B 2 12 DA 12 632 632 DA A D . n B 2 13 DC 13 633 633 DC C D . n B 2 14 DC 14 634 634 DC C D . n B 2 15 DT 15 635 635 DT T D . n B 2 16 DA 16 636 636 DA A D . n B 2 17 DG 17 637 637 DG G D . n B 2 18 DT 18 638 638 DT T D . n B 2 19 DT 19 639 639 DT T D . n B 2 20 DG 20 640 640 DG G D . n C 3 1 THR 1 92 ? ? ? A . n C 3 2 LYS 2 93 ? ? ? A . n C 3 3 LEU 3 94 ? ? ? A . n C 3 4 ASN 4 95 ? ? ? A . n C 3 5 GLY 5 96 ? ? ? A . n C 3 6 MET 6 97 ? ? ? A . n C 3 7 VAL 7 98 ? ? ? A . n C 3 8 LEU 8 99 99 LEU LEU A . n C 3 9 LEU 9 100 100 LEU LEU A . n C 3 10 CYS 10 101 101 CYS CYS A . n C 3 11 LYS 11 102 102 LYS LYS A . n C 3 12 VAL 12 103 103 VAL VAL A . n C 3 13 CYS 13 104 104 CYS CYS A . n C 3 14 GLY 14 105 105 GLY GLY A . n C 3 15 ASP 15 106 106 ASP ASP A . n C 3 16 VAL 16 107 107 VAL VAL A . n C 3 17 ALA 17 108 108 ALA ALA A . n C 3 18 SER 18 109 109 SER SER A . n C 3 19 GLY 19 110 110 GLY GLY A . n C 3 20 PHE 20 111 111 PHE PHE A . n C 3 21 HIS 21 112 112 HIS HIS A . n C 3 22 TYR 22 113 113 TYR TYR A . n C 3 23 GLY 23 114 114 GLY GLY A . n C 3 24 VAL 24 115 115 VAL VAL A . n C 3 25 LEU 25 116 116 LEU LEU A . n C 3 26 ALA 26 117 117 ALA ALA A . n C 3 27 CYS 27 118 118 CYS CYS A . n C 3 28 GLU 28 119 119 GLU GLU A . n C 3 29 GLY 29 120 120 GLY GLY A . n C 3 30 CYS 30 121 121 CYS CYS A . n C 3 31 LYS 31 122 122 LYS LYS A . n C 3 32 GLY 32 123 123 GLY GLY A . n C 3 33 PHE 33 124 124 PHE PHE A . n C 3 34 PHE 34 125 125 PHE PHE A . n C 3 35 ARG 35 126 126 ARG ARG A . n C 3 36 ARG 36 127 127 ARG ARG A . n C 3 37 SER 37 128 128 SER SER A . n C 3 38 ILE 38 129 129 ILE ILE A . n C 3 39 GLN 39 130 130 GLN GLN A . n C 3 40 GLN 40 131 131 GLN GLN A . n C 3 41 ASN 41 132 132 ASN ASN A . n C 3 42 ILE 42 133 133 ILE ILE A . n C 3 43 GLN 43 133 133 GLN GLN A A n C 3 44 TYR 44 134 134 TYR TYR A . n C 3 45 LYS 45 135 135 LYS LYS A . n C 3 46 ARG 46 136 136 ARG ARG A . n C 3 47 CYS 47 137 137 CYS CYS A . n C 3 48 LEU 48 138 138 LEU LEU A . n C 3 49 LYS 49 139 139 LYS LYS A . n C 3 50 ASN 50 140 140 ASN ASN A . n C 3 51 GLU 51 141 141 GLU GLU A . n C 3 52 ASN 52 142 142 ASN ASN A . n C 3 53 CYS 53 143 143 CYS CYS A . n C 3 54 SER 54 144 144 SER SER A . n C 3 55 ILE 55 145 145 ILE ILE A . n C 3 56 VAL 56 146 146 VAL VAL A . n C 3 57 ARG 57 147 147 ARG ARG A . n C 3 58 ILE 58 148 148 ILE ILE A . n C 3 59 ASN 59 149 149 ASN ASN A . n C 3 60 ARG 60 150 150 ARG ARG A . n C 3 61 ASN 61 151 151 ASN ASN A . n C 3 62 ARG 62 152 152 ARG ARG A . n C 3 63 CYS 63 153 153 CYS CYS A . n C 3 64 GLN 64 154 154 GLN GLN A . n C 3 65 GLN 65 155 155 GLN GLN A . n C 3 66 CYS 66 156 156 CYS CYS A . n C 3 67 ARG 67 157 157 ARG ARG A . n C 3 68 PHE 68 158 158 PHE PHE A . n C 3 69 LYS 69 159 159 LYS LYS A . n C 3 70 LYS 70 160 160 LYS LYS A . n C 3 71 CYS 71 161 161 CYS CYS A . n C 3 72 LEU 72 162 162 LEU LEU A . n C 3 73 SER 73 163 163 SER SER A . n C 3 74 VAL 74 164 164 VAL VAL A . n C 3 75 GLY 75 165 165 GLY GLY A . n C 3 76 MET 76 166 166 MET MET A . n C 3 77 SER 77 167 167 SER SER A . n C 3 78 ARG 78 168 168 ARG ARG A . n C 3 79 ASP 79 169 169 ASP ASP A . n C 3 80 ALA 80 170 170 ALA ALA A . n C 3 81 VAL 81 171 171 VAL VAL A . n C 3 82 ARG 82 172 172 ARG ARG A . n C 3 83 PHE 83 173 173 PHE PHE A . n C 3 84 GLY 84 174 174 GLY GLY A . n C 3 85 ARG 85 175 175 ARG ARG A . n C 3 86 ILE 86 176 ? ? ? A . n C 3 87 PRO 87 177 ? ? ? A . n C 3 88 LYS 88 178 ? ? ? A . n C 3 89 ARG 89 179 ? ? ? A . n C 3 90 GLU 90 180 ? ? ? A . n C 3 91 LYS 91 181 ? ? ? A . n C 3 92 GLN 92 182 ? ? ? A . n C 3 93 ARG 93 183 ? ? ? A . n C 3 94 MET 94 184 ? ? ? A . n D 3 1 THR 1 92 ? ? ? B . n D 3 2 LYS 2 93 ? ? ? B . n D 3 3 LEU 3 94 ? ? ? B . n D 3 4 ASN 4 95 ? ? ? B . n D 3 5 GLY 5 96 96 GLY GLY B . n D 3 6 MET 6 97 97 MET MET B . n D 3 7 VAL 7 98 98 VAL VAL B . n D 3 8 LEU 8 99 99 LEU LEU B . n D 3 9 LEU 9 100 100 LEU LEU B . n D 3 10 CYS 10 101 101 CYS CYS B . n D 3 11 LYS 11 102 102 LYS LYS B . n D 3 12 VAL 12 103 103 VAL VAL B . n D 3 13 CYS 13 104 104 CYS CYS B . n D 3 14 GLY 14 105 105 GLY GLY B . n D 3 15 ASP 15 106 106 ASP ASP B . n D 3 16 VAL 16 107 107 VAL VAL B . n D 3 17 ALA 17 108 108 ALA ALA B . n D 3 18 SER 18 109 109 SER SER B . n D 3 19 GLY 19 110 110 GLY GLY B . n D 3 20 PHE 20 111 111 PHE PHE B . n D 3 21 HIS 21 112 112 HIS HIS B . n D 3 22 TYR 22 113 113 TYR TYR B . n D 3 23 GLY 23 114 114 GLY GLY B . n D 3 24 VAL 24 115 115 VAL VAL B . n D 3 25 LEU 25 116 116 LEU LEU B . n D 3 26 ALA 26 117 117 ALA ALA B . n D 3 27 CYS 27 118 118 CYS CYS B . n D 3 28 GLU 28 119 119 GLU GLU B . n D 3 29 GLY 29 120 120 GLY GLY B . n D 3 30 CYS 30 121 121 CYS CYS B . n D 3 31 LYS 31 122 122 LYS LYS B . n D 3 32 GLY 32 123 123 GLY GLY B . n D 3 33 PHE 33 124 124 PHE PHE B . n D 3 34 PHE 34 125 125 PHE PHE B . n D 3 35 ARG 35 126 126 ARG ARG B . n D 3 36 ARG 36 127 127 ARG ARG B . n D 3 37 SER 37 128 128 SER SER B . n D 3 38 ILE 38 129 129 ILE ILE B . n D 3 39 GLN 39 130 130 GLN GLN B . n D 3 40 GLN 40 131 131 GLN GLN B . n D 3 41 ASN 41 132 132 ASN ASN B . n D 3 42 ILE 42 133 133 ILE ILE B . n D 3 43 GLN 43 133 133 GLN GLN B A n D 3 44 TYR 44 134 134 TYR TYR B . n D 3 45 LYS 45 135 135 LYS LYS B . n D 3 46 ARG 46 136 136 ARG ARG B . n D 3 47 CYS 47 137 137 CYS CYS B . n D 3 48 LEU 48 138 138 LEU LEU B . n D 3 49 LYS 49 139 139 LYS LYS B . n D 3 50 ASN 50 140 140 ASN ASN B . n D 3 51 GLU 51 141 141 GLU GLU B . n D 3 52 ASN 52 142 142 ASN ASN B . n D 3 53 CYS 53 143 143 CYS CYS B . n D 3 54 SER 54 144 144 SER SER B . n D 3 55 ILE 55 145 145 ILE ILE B . n D 3 56 VAL 56 146 146 VAL VAL B . n D 3 57 ARG 57 147 147 ARG ARG B . n D 3 58 ILE 58 148 148 ILE ILE B . n D 3 59 ASN 59 149 149 ASN ASN B . n D 3 60 ARG 60 150 150 ARG ARG B . n D 3 61 ASN 61 151 151 ASN ASN B . n D 3 62 ARG 62 152 152 ARG ARG B . n D 3 63 CYS 63 153 153 CYS CYS B . n D 3 64 GLN 64 154 154 GLN GLN B . n D 3 65 GLN 65 155 155 GLN GLN B . n D 3 66 CYS 66 156 156 CYS CYS B . n D 3 67 ARG 67 157 157 ARG ARG B . n D 3 68 PHE 68 158 158 PHE PHE B . n D 3 69 LYS 69 159 159 LYS LYS B . n D 3 70 LYS 70 160 160 LYS LYS B . n D 3 71 CYS 71 161 161 CYS CYS B . n D 3 72 LEU 72 162 162 LEU LEU B . n D 3 73 SER 73 163 163 SER SER B . n D 3 74 VAL 74 164 164 VAL VAL B . n D 3 75 GLY 75 165 165 GLY GLY B . n D 3 76 MET 76 166 166 MET MET B . n D 3 77 SER 77 167 167 SER SER B . n D 3 78 ARG 78 168 168 ARG ARG B . n D 3 79 ASP 79 169 169 ASP ASP B . n D 3 80 ALA 80 170 170 ALA ALA B . n D 3 81 VAL 81 171 171 VAL VAL B . n D 3 82 ARG 82 172 172 ARG ARG B . n D 3 83 PHE 83 173 173 PHE PHE B . n D 3 84 GLY 84 174 174 GLY GLY B . n D 3 85 ARG 85 175 175 ARG ARG B . n D 3 86 ILE 86 176 176 ILE ILE B . n D 3 87 PRO 87 177 177 PRO PRO B . n D 3 88 LYS 88 178 178 LYS LYS B . n D 3 89 ARG 89 179 ? ? ? B . n D 3 90 GLU 90 180 ? ? ? B . n D 3 91 LYS 91 181 ? ? ? B . n D 3 92 GLN 92 182 ? ? ? B . n D 3 93 ARG 93 183 ? ? ? B . n D 3 94 MET 94 184 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN 1 550 550 ZN ZN A . F 4 ZN 1 551 551 ZN ZN A . G 4 ZN 1 450 450 ZN ZN B . H 4 ZN 1 451 451 ZN ZN B . I 5 HOH 1 704 704 HOH HOH C . I 5 HOH 2 719 719 HOH HOH C . I 5 HOH 3 722 722 HOH HOH C . I 5 HOH 4 734 734 HOH HOH C . I 5 HOH 5 735 735 HOH HOH C . I 5 HOH 6 737 737 HOH HOH C . I 5 HOH 7 742 742 HOH HOH C . I 5 HOH 8 743 743 HOH HOH C . I 5 HOH 9 749 749 HOH HOH C . I 5 HOH 10 750 750 HOH HOH C . I 5 HOH 11 753 753 HOH HOH C . I 5 HOH 12 777 777 HOH HOH C . I 5 HOH 13 778 778 HOH HOH C . I 5 HOH 14 782 782 HOH HOH C . I 5 HOH 15 783 783 HOH HOH C . I 5 HOH 16 789 789 HOH HOH C . I 5 HOH 17 792 792 HOH HOH C . I 5 HOH 18 798 798 HOH HOH C . I 5 HOH 19 801 801 HOH HOH C . I 5 HOH 20 805 805 HOH HOH C . I 5 HOH 21 806 806 HOH HOH C . I 5 HOH 22 807 807 HOH HOH C . I 5 HOH 23 809 809 HOH HOH C . I 5 HOH 24 811 811 HOH HOH C . I 5 HOH 25 814 814 HOH HOH C . I 5 HOH 26 815 815 HOH HOH C . I 5 HOH 27 817 817 HOH HOH C . I 5 HOH 28 818 818 HOH HOH C . I 5 HOH 29 821 821 HOH HOH C . I 5 HOH 30 823 823 HOH HOH C . I 5 HOH 31 825 825 HOH HOH C . I 5 HOH 32 840 840 HOH HOH C . I 5 HOH 33 847 847 HOH HOH C . I 5 HOH 34 849 849 HOH HOH C . I 5 HOH 35 850 850 HOH HOH C . I 5 HOH 36 851 851 HOH HOH C . I 5 HOH 37 857 857 HOH HOH C . I 5 HOH 38 858 858 HOH HOH C . I 5 HOH 39 861 861 HOH HOH C . I 5 HOH 40 866 866 HOH HOH C . I 5 HOH 41 867 867 HOH HOH C . I 5 HOH 42 868 868 HOH HOH C . I 5 HOH 43 872 872 HOH HOH C . I 5 HOH 44 875 875 HOH HOH C . I 5 HOH 45 876 876 HOH HOH C . I 5 HOH 46 877 877 HOH HOH C . I 5 HOH 47 878 878 HOH HOH C . I 5 HOH 48 880 880 HOH HOH C . I 5 HOH 49 881 881 HOH HOH C . I 5 HOH 50 882 882 HOH HOH C . I 5 HOH 51 887 887 HOH HOH C . I 5 HOH 52 893 893 HOH HOH C . I 5 HOH 53 895 895 HOH HOH C . I 5 HOH 54 917 917 HOH HOH C . I 5 HOH 55 919 919 HOH HOH C . I 5 HOH 56 926 926 HOH HOH C . I 5 HOH 57 929 929 HOH HOH C . I 5 HOH 58 932 932 HOH HOH C . J 5 HOH 1 701 701 HOH HOH D . J 5 HOH 2 702 702 HOH HOH D . J 5 HOH 3 703 703 HOH HOH D . J 5 HOH 4 706 706 HOH HOH D . J 5 HOH 5 712 712 HOH HOH D . J 5 HOH 6 713 713 HOH HOH D . J 5 HOH 7 714 714 HOH HOH D . J 5 HOH 8 715 715 HOH HOH D . J 5 HOH 9 716 716 HOH HOH D . J 5 HOH 10 720 720 HOH HOH D . J 5 HOH 11 723 723 HOH HOH D . J 5 HOH 12 726 726 HOH HOH D . J 5 HOH 13 728 728 HOH HOH D . J 5 HOH 14 731 731 HOH HOH D . J 5 HOH 15 738 738 HOH HOH D . J 5 HOH 16 739 739 HOH HOH D . J 5 HOH 17 740 740 HOH HOH D . J 5 HOH 18 744 744 HOH HOH D . J 5 HOH 19 745 745 HOH HOH D . J 5 HOH 20 746 746 HOH HOH D . J 5 HOH 21 757 757 HOH HOH D . J 5 HOH 22 758 758 HOH HOH D . J 5 HOH 23 759 759 HOH HOH D . J 5 HOH 24 761 761 HOH HOH D . J 5 HOH 25 776 776 HOH HOH D . J 5 HOH 26 781 781 HOH HOH D . J 5 HOH 27 791 791 HOH HOH D . J 5 HOH 28 794 794 HOH HOH D . J 5 HOH 29 796 796 HOH HOH D . J 5 HOH 30 803 803 HOH HOH D . J 5 HOH 31 804 804 HOH HOH D . J 5 HOH 32 808 808 HOH HOH D . J 5 HOH 33 810 810 HOH HOH D . J 5 HOH 34 819 819 HOH HOH D . J 5 HOH 35 820 820 HOH HOH D . J 5 HOH 36 822 822 HOH HOH D . J 5 HOH 37 824 824 HOH HOH D . J 5 HOH 38 827 827 HOH HOH D . J 5 HOH 39 828 828 HOH HOH D . J 5 HOH 40 829 829 HOH HOH D . J 5 HOH 41 830 830 HOH HOH D . J 5 HOH 42 831 831 HOH HOH D . J 5 HOH 43 832 832 HOH HOH D . J 5 HOH 44 833 833 HOH HOH D . J 5 HOH 45 834 834 HOH HOH D . J 5 HOH 46 835 835 HOH HOH D . J 5 HOH 47 836 836 HOH HOH D . J 5 HOH 48 837 837 HOH HOH D . J 5 HOH 49 838 838 HOH HOH D . J 5 HOH 50 839 839 HOH HOH D . J 5 HOH 51 841 841 HOH HOH D . J 5 HOH 52 845 845 HOH HOH D . J 5 HOH 53 860 860 HOH HOH D . J 5 HOH 54 863 863 HOH HOH D . J 5 HOH 55 865 865 HOH HOH D . J 5 HOH 56 869 869 HOH HOH D . J 5 HOH 57 870 870 HOH HOH D . J 5 HOH 58 871 871 HOH HOH D . J 5 HOH 59 873 873 HOH HOH D . J 5 HOH 60 874 874 HOH HOH D . J 5 HOH 61 879 879 HOH HOH D . J 5 HOH 62 891 891 HOH HOH D . J 5 HOH 63 897 897 HOH HOH D . J 5 HOH 64 898 898 HOH HOH D . J 5 HOH 65 906 906 HOH HOH D . J 5 HOH 66 907 907 HOH HOH D . J 5 HOH 67 908 908 HOH HOH D . J 5 HOH 68 909 909 HOH HOH D . J 5 HOH 69 910 910 HOH HOH D . J 5 HOH 70 911 911 HOH HOH D . J 5 HOH 71 912 912 HOH HOH D . J 5 HOH 72 916 916 HOH HOH D . J 5 HOH 73 920 920 HOH HOH D . J 5 HOH 74 922 922 HOH HOH D . J 5 HOH 75 930 930 HOH HOH D . J 5 HOH 76 931 931 HOH HOH D . J 5 HOH 77 933 933 HOH HOH D . K 5 HOH 1 709 709 HOH HOH A . K 5 HOH 2 710 710 HOH HOH A . K 5 HOH 3 711 711 HOH HOH A . K 5 HOH 4 721 721 HOH HOH A . K 5 HOH 5 724 724 HOH HOH A . K 5 HOH 6 725 725 HOH HOH A . K 5 HOH 7 727 727 HOH HOH A . K 5 HOH 8 729 729 HOH HOH A . K 5 HOH 9 730 730 HOH HOH A . K 5 HOH 10 733 733 HOH HOH A . K 5 HOH 11 747 747 HOH HOH A . K 5 HOH 12 762 762 HOH HOH A . K 5 HOH 13 770 770 HOH HOH A . K 5 HOH 14 771 771 HOH HOH A . K 5 HOH 15 772 772 HOH HOH A . K 5 HOH 16 774 774 HOH HOH A . K 5 HOH 17 775 775 HOH HOH A . K 5 HOH 18 787 787 HOH HOH A . K 5 HOH 19 788 788 HOH HOH A . K 5 HOH 20 790 790 HOH HOH A . K 5 HOH 21 812 812 HOH HOH A . K 5 HOH 22 826 826 HOH HOH A . K 5 HOH 23 842 842 HOH HOH A . K 5 HOH 24 843 843 HOH HOH A . K 5 HOH 25 844 844 HOH HOH A . K 5 HOH 26 846 846 HOH HOH A . K 5 HOH 27 864 864 HOH HOH A . K 5 HOH 28 883 883 HOH HOH A . K 5 HOH 29 884 884 HOH HOH A . K 5 HOH 30 885 885 HOH HOH A . K 5 HOH 31 900 900 HOH HOH A . K 5 HOH 32 903 903 HOH HOH A . K 5 HOH 33 915 915 HOH HOH A . K 5 HOH 34 918 918 HOH HOH A . K 5 HOH 35 924 924 HOH HOH A . K 5 HOH 36 925 925 HOH HOH A . K 5 HOH 37 927 927 HOH HOH A . K 5 HOH 38 928 928 HOH HOH A . L 5 HOH 1 700 700 HOH HOH B . L 5 HOH 2 705 705 HOH HOH B . L 5 HOH 3 707 707 HOH HOH B . L 5 HOH 4 708 708 HOH HOH B . L 5 HOH 5 717 717 HOH HOH B . L 5 HOH 6 718 718 HOH HOH B . L 5 HOH 7 732 732 HOH HOH B . L 5 HOH 8 736 736 HOH HOH B . L 5 HOH 9 741 741 HOH HOH B . L 5 HOH 10 748 748 HOH HOH B . L 5 HOH 11 751 751 HOH HOH B . L 5 HOH 12 752 752 HOH HOH B . L 5 HOH 13 754 754 HOH HOH B . L 5 HOH 14 755 755 HOH HOH B . L 5 HOH 15 756 756 HOH HOH B . L 5 HOH 16 760 760 HOH HOH B . L 5 HOH 17 763 763 HOH HOH B . L 5 HOH 18 764 764 HOH HOH B . L 5 HOH 19 765 765 HOH HOH B . L 5 HOH 20 766 766 HOH HOH B . L 5 HOH 21 767 767 HOH HOH B . L 5 HOH 22 768 768 HOH HOH B . L 5 HOH 23 769 769 HOH HOH B . L 5 HOH 24 773 773 HOH HOH B . L 5 HOH 25 779 779 HOH HOH B . L 5 HOH 26 780 780 HOH HOH B . L 5 HOH 27 784 784 HOH HOH B . L 5 HOH 28 785 785 HOH HOH B . L 5 HOH 29 786 786 HOH HOH B . L 5 HOH 30 793 793 HOH HOH B . L 5 HOH 31 795 795 HOH HOH B . L 5 HOH 32 797 797 HOH HOH B . L 5 HOH 33 799 799 HOH HOH B . L 5 HOH 34 800 800 HOH HOH B . L 5 HOH 35 802 802 HOH HOH B . L 5 HOH 36 813 813 HOH HOH B . L 5 HOH 37 816 816 HOH HOH B . L 5 HOH 38 848 848 HOH HOH B . L 5 HOH 39 852 852 HOH HOH B . L 5 HOH 40 853 853 HOH HOH B . L 5 HOH 41 854 854 HOH HOH B . L 5 HOH 42 855 855 HOH HOH B . L 5 HOH 43 856 856 HOH HOH B . L 5 HOH 44 859 859 HOH HOH B . L 5 HOH 45 862 862 HOH HOH B . L 5 HOH 46 886 886 HOH HOH B . L 5 HOH 47 888 888 HOH HOH B . L 5 HOH 48 889 889 HOH HOH B . L 5 HOH 49 890 890 HOH HOH B . L 5 HOH 50 892 892 HOH HOH B . L 5 HOH 51 894 894 HOH HOH B . L 5 HOH 52 896 896 HOH HOH B . L 5 HOH 53 899 899 HOH HOH B . L 5 HOH 54 901 901 HOH HOH B . L 5 HOH 55 902 902 HOH HOH B . L 5 HOH 56 904 904 HOH HOH B . L 5 HOH 57 905 905 HOH HOH B . L 5 HOH 58 913 913 HOH HOH B . L 5 HOH 59 914 914 HOH HOH B . L 5 HOH 60 921 921 HOH HOH B . L 5 HOH 61 923 923 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 5IU _pdbx_struct_mod_residue.label_seq_id 13 _pdbx_struct_mod_residue.auth_asym_id C _pdbx_struct_mod_residue.auth_comp_id 5IU _pdbx_struct_mod_residue.auth_seq_id 612 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DU _pdbx_struct_mod_residue.details "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 10 ? A CYS 101 ? 1_555 ZN ? E ZN . ? A ZN 550 ? 1_555 SG ? C CYS 13 ? A CYS 104 ? 1_555 105.9 ? 2 SG ? C CYS 10 ? A CYS 101 ? 1_555 ZN ? E ZN . ? A ZN 550 ? 1_555 SG ? C CYS 27 ? A CYS 118 ? 1_555 105.1 ? 3 SG ? C CYS 13 ? A CYS 104 ? 1_555 ZN ? E ZN . ? A ZN 550 ? 1_555 SG ? C CYS 27 ? A CYS 118 ? 1_555 99.1 ? 4 SG ? C CYS 10 ? A CYS 101 ? 1_555 ZN ? E ZN . ? A ZN 550 ? 1_555 SG ? C CYS 30 ? A CYS 121 ? 1_555 108.6 ? 5 SG ? C CYS 13 ? A CYS 104 ? 1_555 ZN ? E ZN . ? A ZN 550 ? 1_555 SG ? C CYS 30 ? A CYS 121 ? 1_555 114.2 ? 6 SG ? C CYS 27 ? A CYS 118 ? 1_555 ZN ? E ZN . ? A ZN 550 ? 1_555 SG ? C CYS 30 ? A CYS 121 ? 1_555 122.4 ? 7 SG ? C CYS 47 ? A CYS 137 ? 1_555 ZN ? F ZN . ? A ZN 551 ? 1_555 SG ? C CYS 53 ? A CYS 143 ? 1_555 129.0 ? 8 SG ? C CYS 47 ? A CYS 137 ? 1_555 ZN ? F ZN . ? A ZN 551 ? 1_555 SG ? C CYS 63 ? A CYS 153 ? 1_555 107.7 ? 9 SG ? C CYS 53 ? A CYS 143 ? 1_555 ZN ? F ZN . ? A ZN 551 ? 1_555 SG ? C CYS 63 ? A CYS 153 ? 1_555 109.4 ? 10 SG ? C CYS 47 ? A CYS 137 ? 1_555 ZN ? F ZN . ? A ZN 551 ? 1_555 SG ? C CYS 66 ? A CYS 156 ? 1_555 117.1 ? 11 SG ? C CYS 53 ? A CYS 143 ? 1_555 ZN ? F ZN . ? A ZN 551 ? 1_555 SG ? C CYS 66 ? A CYS 156 ? 1_555 93.2 ? 12 SG ? C CYS 63 ? A CYS 153 ? 1_555 ZN ? F ZN . ? A ZN 551 ? 1_555 SG ? C CYS 66 ? A CYS 156 ? 1_555 94.9 ? 13 SG ? D CYS 10 ? B CYS 101 ? 1_555 ZN ? G ZN . ? B ZN 450 ? 1_555 SG ? D CYS 13 ? B CYS 104 ? 1_555 103.7 ? 14 SG ? D CYS 10 ? B CYS 101 ? 1_555 ZN ? G ZN . ? B ZN 450 ? 1_555 SG ? D CYS 27 ? B CYS 118 ? 1_555 126.5 ? 15 SG ? D CYS 13 ? B CYS 104 ? 1_555 ZN ? G ZN . ? B ZN 450 ? 1_555 SG ? D CYS 27 ? B CYS 118 ? 1_555 110.5 ? 16 SG ? D CYS 10 ? B CYS 101 ? 1_555 ZN ? G ZN . ? B ZN 450 ? 1_555 SG ? D CYS 30 ? B CYS 121 ? 1_555 104.5 ? 17 SG ? D CYS 13 ? B CYS 104 ? 1_555 ZN ? G ZN . ? B ZN 450 ? 1_555 SG ? D CYS 30 ? B CYS 121 ? 1_555 114.9 ? 18 SG ? D CYS 27 ? B CYS 118 ? 1_555 ZN ? G ZN . ? B ZN 450 ? 1_555 SG ? D CYS 30 ? B CYS 121 ? 1_555 96.9 ? 19 SG ? D CYS 47 ? B CYS 137 ? 1_555 ZN ? H ZN . ? B ZN 451 ? 1_555 SG ? D CYS 53 ? B CYS 143 ? 1_555 106.1 ? 20 SG ? D CYS 47 ? B CYS 137 ? 1_555 ZN ? H ZN . ? B ZN 451 ? 1_555 SG ? D CYS 63 ? B CYS 153 ? 1_555 100.6 ? 21 SG ? D CYS 53 ? B CYS 143 ? 1_555 ZN ? H ZN . ? B ZN 451 ? 1_555 SG ? D CYS 63 ? B CYS 153 ? 1_555 126.1 ? 22 SG ? D CYS 47 ? B CYS 137 ? 1_555 ZN ? H ZN . ? B ZN 451 ? 1_555 SG ? D CYS 66 ? B CYS 156 ? 1_555 100.5 ? 23 SG ? D CYS 53 ? B CYS 143 ? 1_555 ZN ? H ZN . ? B ZN 451 ? 1_555 SG ? D CYS 66 ? B CYS 156 ? 1_555 98.9 ? 24 SG ? D CYS 63 ? B CYS 153 ? 1_555 ZN ? H ZN . ? B ZN 451 ? 1_555 SG ? D CYS 66 ? B CYS 156 ? 1_555 121.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-10-21 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' diffrn_source 3 4 'Structure model' pdbx_initial_refinement_model 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_conn_type 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_struct_conn.conn_type_id' 5 4 'Structure model' '_struct_conn.id' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 9 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 22 4 'Structure model' '_struct_conn_type.id' 23 4 'Structure model' '_struct_ref_seq_dif.details' 24 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.84 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 D DG 640 ? ? O D HOH 720 ? ? 1.96 2 1 N4 C DC 609 ? ? O C HOH 778 ? ? 2.10 3 1 NE2 A HIS 112 ? ? O A HOH 788 ? ? 2.17 4 1 OP2 D DT 627 ? ? O D HOH 712 ? ? 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD B LYS 139 ? ? CE B LYS 139 ? ? NZ B LYS 139 ? ? 95.48 111.70 -16.22 2.30 N 2 1 NE B ARG 147 ? ? CZ B ARG 147 ? ? NH2 B ARG 147 ? ? 123.67 120.30 3.37 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 102 ? ? -74.89 21.40 2 1 CYS A 104 ? ? -148.03 29.48 3 1 TYR A 113 ? ? 43.04 28.17 4 1 GLN A 130 ? ? -80.27 34.19 5 1 ASN A 132 ? ? -99.13 41.85 6 1 GLN A 133 A ? -113.57 61.06 7 1 TYR A 134 ? ? -29.49 123.80 8 1 ARG A 136 ? ? -44.11 167.56 9 1 GLU A 141 ? ? 40.06 19.49 10 1 LEU A 162 ? ? -76.59 39.14 11 1 SER A 163 ? ? -146.51 -24.91 12 1 TYR B 113 ? ? 47.53 19.70 13 1 ILE B 133 ? ? -60.53 98.57 14 1 ARG B 136 ? ? -69.48 -173.68 15 1 LEU B 138 ? ? -44.66 -10.02 16 1 GLN B 154 ? ? -58.42 -71.96 17 1 GLN B 155 ? ? -23.79 -48.69 18 1 MET B 166 ? ? -51.35 108.73 19 1 ARG B 175 ? ? -18.10 142.65 20 1 PRO B 177 ? ? -68.11 -136.17 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC C 603 ? ? 0.062 'SIDE CHAIN' 2 1 DC C 611 ? ? 0.073 'SIDE CHAIN' 3 1 DG D 631 ? ? 0.066 'SIDE CHAIN' 4 1 DA D 632 ? ? 0.057 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B MET 97 ? CG ? D MET 6 CG 2 1 Y 1 B MET 97 ? SD ? D MET 6 SD 3 1 Y 1 B MET 97 ? CE ? D MET 6 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 92 ? C THR 1 2 1 Y 1 A LYS 93 ? C LYS 2 3 1 Y 1 A LEU 94 ? C LEU 3 4 1 Y 1 A ASN 95 ? C ASN 4 5 1 Y 1 A GLY 96 ? C GLY 5 6 1 Y 1 A MET 97 ? C MET 6 7 1 Y 1 A VAL 98 ? C VAL 7 8 1 Y 1 A ILE 176 ? C ILE 86 9 1 Y 1 A PRO 177 ? C PRO 87 10 1 Y 1 A LYS 178 ? C LYS 88 11 1 Y 1 A ARG 179 ? C ARG 89 12 1 Y 1 A GLU 180 ? C GLU 90 13 1 Y 1 A LYS 181 ? C LYS 91 14 1 Y 1 A GLN 182 ? C GLN 92 15 1 Y 1 A ARG 183 ? C ARG 93 16 1 Y 1 A MET 184 ? C MET 94 17 1 Y 1 B THR 92 ? D THR 1 18 1 Y 1 B LYS 93 ? D LYS 2 19 1 Y 1 B LEU 94 ? D LEU 3 20 1 Y 1 B ASN 95 ? D ASN 4 21 1 Y 1 B ARG 179 ? D ARG 89 22 1 Y 1 B GLU 180 ? D GLU 90 23 1 Y 1 B LYS 181 ? D LYS 91 24 1 Y 1 B GLN 182 ? D GLN 92 25 1 Y 1 B ARG 183 ? D ARG 93 26 1 Y 1 B MET 184 ? D MET 94 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1A6Y 'double helix' 1A6Y 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 20 1_555 0.098 -0.285 -0.696 10.082 -8.866 -5.294 1 C_DC600:DG640_D C 600 ? D 640 ? 19 1 1 A DA 2 1_555 B DT 19 1_555 0.342 -0.280 0.061 11.415 -21.955 -3.096 2 C_DA601:DT639_D C 601 ? D 639 ? 20 1 1 A DA 3 1_555 B DT 18 1_555 0.044 -0.320 -0.019 -6.683 -19.344 -7.798 3 C_DA602:DT638_D C 602 ? D 638 ? 20 1 1 A DC 4 1_555 B DG 17 1_555 -0.010 -0.327 0.093 2.543 -11.514 1.742 4 C_DC603:DG637_D C 603 ? D 637 ? 19 1 1 A DT 5 1_555 B DA 16 1_555 0.770 -0.090 0.378 -4.807 -14.273 0.033 5 C_DT604:DA636_D C 604 ? D 636 ? 20 1 1 A DA 6 1_555 B DT 15 1_555 -0.301 0.451 -0.013 -3.743 -9.908 7.113 6 C_DA605:DT635_D C 605 ? D 635 ? ? ? 1 A DG 7 1_555 B DC 14 1_555 0.341 -0.179 -0.495 4.978 -8.116 2.971 7 C_DG606:DC634_D C 606 ? D 634 ? 19 1 1 A DG 8 1_555 B DC 13 1_555 -0.286 0.318 -0.296 -6.287 -16.637 8.904 8 C_DG607:DC633_D C 607 ? D 633 ? ? 1 1 A DT 9 1_555 B DA 12 1_555 -0.071 0.200 0.016 -1.984 -17.335 3.450 9 C_DT608:DA632_D C 608 ? D 632 ? 20 1 1 A DC 10 1_555 B DG 11 1_555 0.204 -0.114 -0.599 1.608 0.951 -2.193 10 C_DC609:DG631_D C 609 ? D 631 ? 19 1 1 A DA 11 1_555 B DT 10 1_555 0.578 0.005 0.545 13.434 -20.089 2.491 11 C_DA610:DT630_D C 610 ? D 630 ? 20 1 1 A DC 12 1_555 B DG 9 1_555 0.008 -0.551 -0.227 8.147 -9.663 1.740 12 C_DC611:DG629_D C 611 ? D 629 ? 19 1 1 A 5IU 13 1_555 B DA 8 1_555 0.757 -0.054 0.140 -1.194 -8.382 -3.748 13 C_5IU612:DA628_D C 612 ? D 628 ? 20 1 1 A DA 14 1_555 B DT 7 1_555 0.014 -0.066 0.473 3.475 -11.189 -5.805 14 C_DA613:DT627_D C 613 ? D 627 ? 20 1 1 A DG 15 1_555 B DC 6 1_555 0.164 -0.212 -0.167 6.749 -6.844 7.086 15 C_DG614:DC626_D C 614 ? D 626 ? 19 1 1 A DG 16 1_555 B DC 5 1_555 0.034 -0.088 -0.206 -5.276 -9.475 -1.930 16 C_DG615:DC625_D C 615 ? D 625 ? 19 1 1 A DT 17 1_555 B DA 4 1_555 -0.441 -0.393 0.137 -2.425 -13.835 0.841 17 C_DT616:DA624_D C 616 ? D 624 ? 20 1 1 A DC 18 1_555 B DG 3 1_555 0.263 -0.442 -0.278 2.560 -1.241 0.435 18 C_DC617:DG623_D C 617 ? D 623 ? 19 1 1 A DA 19 1_555 B DT 2 1_555 0.127 -0.055 0.273 8.012 -19.605 2.071 19 C_DA618:DT622_D C 618 ? D 622 ? 20 1 1 A DG 20 1_555 B DC 1 1_555 0.709 0.131 -0.067 7.294 -12.480 -3.501 20 C_DG619:DC621_D C 619 ? D 621 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 20 1_555 A DA 2 1_555 B DT 19 1_555 0.399 1.025 3.287 -2.822 11.124 39.213 0.188 -0.898 3.407 16.159 4.099 40.795 1 CC_DC600DA601:DT639DG640_DD C 600 ? D 640 ? C 601 ? D 639 ? 1 A DA 2 1_555 B DT 19 1_555 A DA 3 1_555 B DT 18 1_555 -0.532 0.148 3.576 -3.946 12.542 37.456 -1.414 0.272 3.485 18.835 5.926 39.618 2 CC_DA601DA602:DT638DT639_DD C 601 ? D 639 ? C 602 ? D 638 ? 1 A DA 3 1_555 B DT 18 1_555 A DC 4 1_555 B DG 17 1_555 1.098 -0.643 2.970 1.675 -1.703 30.552 -0.906 -1.774 3.055 -3.226 -3.173 30.643 3 CC_DA602DC603:DG637DT638_DD C 602 ? D 638 ? C 603 ? D 637 ? 1 A DC 4 1_555 B DG 17 1_555 A DT 5 1_555 B DA 16 1_555 -0.707 -0.170 3.624 -0.108 7.367 37.386 -1.292 1.069 3.530 11.357 0.167 38.079 4 CC_DC603DT604:DA636DG637_DD C 603 ? D 637 ? C 604 ? D 636 ? 1 A DT 5 1_555 B DA 16 1_555 A DA 6 1_555 B DT 15 1_555 -0.064 1.919 3.291 1.345 -7.003 46.180 2.984 0.190 2.983 -8.865 -1.703 46.698 5 CC_DT604DA605:DT635DA636_DD C 604 ? D 636 ? C 605 ? D 635 ? 1 A DA 6 1_555 B DT 15 1_555 A DG 7 1_555 B DC 14 1_555 -0.556 0.362 3.299 0.228 5.202 30.181 -0.361 1.099 3.309 9.897 -0.434 30.617 6 CC_DA605DG606:DC634DT635_DD C 605 ? D 635 ? C 606 ? D 634 ? 1 A DG 7 1_555 B DC 14 1_555 A DG 8 1_555 B DC 13 1_555 0.266 0.354 3.402 -1.079 8.625 31.856 -0.920 -0.662 3.370 15.359 1.921 32.991 7 CC_DG606DG607:DC633DC634_DD C 606 ? D 634 ? C 607 ? D 633 ? 1 A DG 8 1_555 B DC 13 1_555 A DT 9 1_555 B DA 12 1_555 -0.504 -0.194 2.989 -3.127 5.145 31.688 -1.190 0.398 2.957 9.317 5.663 32.241 8 CC_DG607DT608:DA632DC633_DD C 607 ? D 633 ? C 608 ? D 632 ? 1 A DT 9 1_555 B DA 12 1_555 A DC 10 1_555 B DG 11 1_555 1.440 1.449 3.202 9.293 -2.100 38.154 2.411 -1.014 3.367 -3.153 -13.952 39.282 9 CC_DT608DC609:DG631DA632_DD C 608 ? D 632 ? C 609 ? D 631 ? 1 A DC 10 1_555 B DG 11 1_555 A DA 11 1_555 B DT 10 1_555 -0.314 1.479 3.000 -6.803 4.182 41.369 1.649 -0.229 3.139 5.854 9.523 42.100 10 CC_DC609DA610:DT630DG631_DD C 609 ? D 631 ? C 610 ? D 630 ? 1 A DA 11 1_555 B DT 10 1_555 A DC 12 1_555 B DG 9 1_555 1.102 -1.087 3.374 7.044 2.654 30.780 -2.509 -0.647 3.433 4.908 -13.027 31.666 11 CC_DA610DC611:DG629DT630_DD C 610 ? D 630 ? C 611 ? D 629 ? 1 A DC 12 1_555 B DG 9 1_555 A 5IU 13 1_555 B DA 8 1_555 -0.854 -0.525 3.693 0.136 10.560 31.883 -2.827 1.505 3.351 18.596 -0.239 33.543 12 CC_DC6115IU612:DA628DG629_DD C 611 ? D 629 ? C 612 ? D 628 ? 1 A 5IU 13 1_555 B DA 8 1_555 A DA 14 1_555 B DT 7 1_555 -1.638 0.270 3.045 -7.863 -1.904 37.728 0.639 1.528 3.291 -2.903 11.991 38.554 13 CC_5IU612DA613:DT627DA628_DD C 612 ? D 628 ? C 613 ? D 627 ? 1 A DA 14 1_555 B DT 7 1_555 A DG 15 1_555 B DC 6 1_555 0.805 -0.598 3.395 1.631 -0.899 31.034 -0.935 -1.176 3.447 -1.679 -3.045 31.089 14 CC_DA613DG614:DC626DT627_DD C 613 ? D 627 ? C 614 ? D 626 ? 1 A DG 15 1_555 B DC 6 1_555 A DG 16 1_555 B DC 5 1_555 -0.981 -0.380 3.561 -5.647 7.203 39.412 -1.441 0.723 3.542 10.510 8.238 40.420 15 CC_DG614DG615:DC625DC626_DD C 614 ? D 626 ? C 615 ? D 625 ? 1 A DG 16 1_555 B DC 5 1_555 A DT 17 1_555 B DA 4 1_555 -0.159 -0.740 3.137 -0.897 -1.964 29.448 -1.047 0.128 3.182 -3.858 1.762 29.525 16 CC_DG615DT616:DA624DC625_DD C 615 ? D 625 ? C 616 ? D 624 ? 1 A DT 17 1_555 B DA 4 1_555 A DC 18 1_555 B DG 3 1_555 1.263 1.959 3.332 5.008 3.028 40.632 2.445 -1.222 3.587 4.333 -7.167 41.034 17 CC_DT616DC617:DG623DA624_DD C 616 ? D 624 ? C 617 ? D 623 ? 1 A DC 18 1_555 B DG 3 1_555 A DA 19 1_555 B DT 2 1_555 -0.559 1.518 3.183 -3.736 2.619 36.194 2.063 0.377 3.320 4.194 5.984 36.471 18 CC_DC617DA618:DT622DG623_DD C 617 ? D 623 ? C 618 ? D 622 ? 1 A DA 19 1_555 B DT 2 1_555 A DG 20 1_555 B DC 1 1_555 0.141 0.172 3.467 1.454 -1.016 39.879 0.376 -0.029 3.465 -1.488 -2.131 39.917 19 CC_DA618DG619:DC621DT622_DD C 618 ? D 622 ? C 619 ? D 621 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2NLL _pdbx_initial_refinement_model.details 'PDB ENTRY 2NLL (TR PORTION)' #