data_1A78 # _entry.id 1A78 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1A78 pdb_00001a78 10.2210/pdb1a78/pdb WWPDB D_1000170479 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1A78 _pdbx_database_status.recvd_initial_deposition_date 1998-03-20 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Amzel, L.M.' 1 'Bianchet, M.A.' 2 'Ahmed, H.' 3 'Vasta, G.R.' 4 # _citation.id primary _citation.title 'Soluble beta-galactosyl-binding lectin (galectin) from toad ovary: crystallographic studies of two protein-sugar complexes' _citation.journal_abbrev Proteins _citation.journal_volume 40 _citation.page_first 378 _citation.page_last 388 _citation.year 2000 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10861929 _citation.pdbx_database_id_DOI '10.1002/1097-0134(20000815)40:3<378::AID-PROT40>3.0.CO;2-7' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bianchet, M.A.' 1 ? primary 'Ahmed, H.' 2 ? primary 'Vasta, G.' 3 ? primary 'Amzel, L.M.' 4 ? # _cell.entry_id 1A78 _cell.length_a 51.800 _cell.length_b 51.000 _cell.length_c 56.300 _cell.angle_alpha 90.00 _cell.angle_beta 97.20 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A78 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat GALECTIN-1 14725.699 2 ? ? ? ? 2 branched man 'beta-D-galactopyranose-(1-1)-1-thio-beta-D-galactopyranose' 358.362 2 ? ? ? ? 3 non-polymer syn 2,3-DIHYDROXY-1,4-DITHIOBUTANE 154.251 1 ? ? ? ? 4 water nat water 18.015 46 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'S-LECTIN GALECTIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ASAGVAVTNLNLKPGHCVEIKGSIPPDCKGFAVNLGEDASNFLLHFNARFDLHGDVNKIVCNSKEADAWGSEQREEVFPF QQGAEVMVCFEYQTQKIIIKFSSGDQFSFPVRKVLPSIPFLSLEGLAFKSITTE ; _entity_poly.pdbx_seq_one_letter_code_can ;ASAGVAVTNLNLKPGHCVEIKGSIPPDCKGFAVNLGEDASNFLLHFNARFDLHGDVNKIVCNSKEADAWGSEQREEVFPF QQGAEVMVCFEYQTQKIIIKFSSGDQFSFPVRKVLPSIPFLSLEGLAFKSITTE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 SER n 1 3 ALA n 1 4 GLY n 1 5 VAL n 1 6 ALA n 1 7 VAL n 1 8 THR n 1 9 ASN n 1 10 LEU n 1 11 ASN n 1 12 LEU n 1 13 LYS n 1 14 PRO n 1 15 GLY n 1 16 HIS n 1 17 CYS n 1 18 VAL n 1 19 GLU n 1 20 ILE n 1 21 LYS n 1 22 GLY n 1 23 SER n 1 24 ILE n 1 25 PRO n 1 26 PRO n 1 27 ASP n 1 28 CYS n 1 29 LYS n 1 30 GLY n 1 31 PHE n 1 32 ALA n 1 33 VAL n 1 34 ASN n 1 35 LEU n 1 36 GLY n 1 37 GLU n 1 38 ASP n 1 39 ALA n 1 40 SER n 1 41 ASN n 1 42 PHE n 1 43 LEU n 1 44 LEU n 1 45 HIS n 1 46 PHE n 1 47 ASN n 1 48 ALA n 1 49 ARG n 1 50 PHE n 1 51 ASP n 1 52 LEU n 1 53 HIS n 1 54 GLY n 1 55 ASP n 1 56 VAL n 1 57 ASN n 1 58 LYS n 1 59 ILE n 1 60 VAL n 1 61 CYS n 1 62 ASN n 1 63 SER n 1 64 LYS n 1 65 GLU n 1 66 ALA n 1 67 ASP n 1 68 ALA n 1 69 TRP n 1 70 GLY n 1 71 SER n 1 72 GLU n 1 73 GLN n 1 74 ARG n 1 75 GLU n 1 76 GLU n 1 77 VAL n 1 78 PHE n 1 79 PRO n 1 80 PHE n 1 81 GLN n 1 82 GLN n 1 83 GLY n 1 84 ALA n 1 85 GLU n 1 86 VAL n 1 87 MET n 1 88 VAL n 1 89 CYS n 1 90 PHE n 1 91 GLU n 1 92 TYR n 1 93 GLN n 1 94 THR n 1 95 GLN n 1 96 LYS n 1 97 ILE n 1 98 ILE n 1 99 ILE n 1 100 LYS n 1 101 PHE n 1 102 SER n 1 103 SER n 1 104 GLY n 1 105 ASP n 1 106 GLN n 1 107 PHE n 1 108 SER n 1 109 PHE n 1 110 PRO n 1 111 VAL n 1 112 ARG n 1 113 LYS n 1 114 VAL n 1 115 LEU n 1 116 PRO n 1 117 SER n 1 118 ILE n 1 119 PRO n 1 120 PHE n 1 121 LEU n 1 122 SER n 1 123 LEU n 1 124 GLU n 1 125 GLY n 1 126 LEU n 1 127 ALA n 1 128 PHE n 1 129 LYS n 1 130 SER n 1 131 ILE n 1 132 THR n 1 133 THR n 1 134 GLU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Bufo arenarum' _entity_src_nat.pdbx_ncbi_taxonomy_id 38577 _entity_src_nat.genus Bufo _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ OVARY _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LEG1_BUFAR _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P56217 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;ASAGVAVTNLNLKPGHCVEIKGSIPPDCKGFAVNLGEDASNFLLHFNARFDLHGDVNKIVCNSKEADAWGSEQREEVFPF QQGAEVMVCFEYQTQKIIIKFSSGDQFSFPVRKVLPSIPFLSLEGLAFKSITTE ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1A78 A 1 ? 134 ? P56217 1 ? 134 ? 1 134 2 1 1A78 B 1 ? 134 ? P56217 1 ? 134 ? 1 134 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DTT non-polymer . 2,3-DIHYDROXY-1,4-DITHIOBUTANE 1,4-DITHIOTHREITOL 'C4 H10 O2 S2' 154.251 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YIO 'D-saccharide, beta linking' . 1-thio-beta-D-galactopyranose '(2R,3R,4S,5R,6S)-2-(HYDROXYMETHYL)-6-SULFANYL-OXANE-3,4,5-TRIOL; 1-thio-beta-D-galactose; 1-thio-D-galactose; 1-thio-galactose' 'C6 H12 O5 S' 196.221 # _exptl.entry_id 1A78 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_percent_sol 50.88 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;DROPS OF EQUAL AMOUNT OF 10-12 MG/ML PROTEIN AND RESERVOIR SOLUTION WERE EQUILIBRATED AGAINST 1 ML OF (NH4)2SO4 AT 56% SATURATION IN 100MM TRIS-ACETATE BUFFER, PH 6.6 AND 1% MPD AND 1% DTT ; # _diffrn.id 1 _diffrn.ambient_temp 300 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1994-12 _diffrn_detector.details MONOCHROMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRAPHITE(002)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1A78 _reflns.observed_criterion_sigma_I 0.5 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 1.945 _reflns.number_obs 14540 _reflns.number_all ? _reflns.percent_possible_obs 68.6 _reflns.pdbx_Rmerge_I_obs 0.0860000 _reflns.pdbx_Rsym_value 0.0860000 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.3 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1A78 _refine.ls_number_reflns_obs 15569 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 100000 _refine.pdbx_data_cutoff_low_absF 0.1 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.0 _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs 81.5 _refine.ls_R_factor_obs 0.1940000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1940000 _refine.ls_R_factor_R_free 0.2560000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10. _refine.ls_number_reflns_R_free 1550 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 36.32 _refine.aniso_B[1][1] 0 _refine.aniso_B[2][2] 0 _refine.aniso_B[3][3] 0 _refine.aniso_B[1][2] 0 _refine.aniso_B[1][3] 0 _refine.aniso_B[2][3] 0 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1GAN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1A78 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 6.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2070 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 46 _refine_hist.number_atoms_total 2170 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 6.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.739 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 28.12 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.4 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.82 1.5 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 3.13 2.0 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 2.72 2.0 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 3.94 2.5 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.0 _refine_ls_shell.d_res_low 2.09 _refine_ls_shell.number_reflns_R_work 769 _refine_ls_shell.R_factor_R_work 0.2869000 _refine_ls_shell.percent_reflns_obs 36. _refine_ls_shell.R_factor_R_free 0.2578000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 3.46 _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 PARAM3.CHO TOPH3.CHO 'X-RAY DIFFRACTION' # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] 0.606149 _struct_ncs_oper.matrix[1][2] 0.675442 _struct_ncs_oper.matrix[1][3] -0.419954 _struct_ncs_oper.matrix[2][1] 0.684481 _struct_ncs_oper.matrix[2][2] -0.711912 _struct_ncs_oper.matrix[2][3] -0.157060 _struct_ncs_oper.matrix[3][1] -0.405055 _struct_ncs_oper.matrix[3][2] -0.192248 _struct_ncs_oper.matrix[3][3] -0.893852 _struct_ncs_oper.vector[1] 6.67420 _struct_ncs_oper.vector[2] -7.67920 _struct_ncs_oper.vector[3] 14.58580 # _struct.entry_id 1A78 _struct.title 'COMPLEX OF TOAD OVARY GALECTIN WITH THIO-DIGALACTOSE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1A78 _struct_keywords.pdbx_keywords LECTIN _struct_keywords.text 'S-LECTIN, CARBOHYDRATE BINDING, COMPLEX (LECTIN-SACCHARIDE), LECTIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? C YIO . S1 ? ? ? 1_555 C GAL . C1 ? ? E YIO 1 E GAL 2 1_555 ? ? ? ? ? ? ? 1.826 sing ? covale2 covale one ? D YIO . S1 ? ? ? 1_555 D GAL . C1 ? ? F YIO 1 F GAL 2 1_555 ? ? ? ? ? ? ? 1.801 sing ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? C ? 6 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 6 ? THR A 8 ? ALA A 6 THR A 8 A 2 PHE A 120 ? GLU A 124 ? PHE A 120 GLU A 124 A 3 GLY A 30 ? GLY A 36 ? GLY A 30 GLY A 36 A 4 PHE A 42 ? ARG A 49 ? PHE A 42 ARG A 49 A 5 LYS A 58 ? ASN A 62 ? LYS A 58 ASN A 62 A 6 GLN A 73 ? GLU A 75 ? GLN A 73 GLU A 75 B 1 GLN A 106 ? PRO A 110 ? GLN A 106 PRO A 110 B 2 LYS A 96 ? PHE A 101 ? LYS A 96 PHE A 101 B 3 GLU A 85 ? TYR A 92 ? GLU A 85 TYR A 92 B 4 HIS A 16 ? SER A 23 ? HIS A 16 SER A 23 B 5 ALA A 127 ? THR A 133 ? ALA A 127 THR A 133 C 1 ALA B 6 ? THR B 8 ? ALA B 6 THR B 8 C 2 PHE B 120 ? GLU B 124 ? PHE B 120 GLU B 124 C 3 GLY B 30 ? GLY B 36 ? GLY B 30 GLY B 36 C 4 PHE B 42 ? ARG B 49 ? PHE B 42 ARG B 49 C 5 LYS B 58 ? ASN B 62 ? LYS B 58 ASN B 62 C 6 GLN B 73 ? GLU B 75 ? GLN B 73 GLU B 75 D 1 GLN B 106 ? PRO B 110 ? GLN B 106 PRO B 110 D 2 LYS B 96 ? PHE B 101 ? LYS B 96 PHE B 101 D 3 GLU B 85 ? TYR B 92 ? GLU B 85 TYR B 92 D 4 HIS B 16 ? ILE B 24 ? HIS B 16 ILE B 24 D 5 LEU B 126 ? GLU B 134 ? LEU B 126 GLU B 134 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 7 ? O VAL A 7 N LEU A 121 ? N LEU A 121 A 2 3 O PHE A 120 ? O PHE A 120 N GLY A 36 ? N GLY A 36 A 3 4 O PHE A 31 ? O PHE A 31 N ALA A 48 ? N ALA A 48 A 4 5 O HIS A 45 ? O HIS A 45 N ASN A 62 ? N ASN A 62 A 5 6 O ILE A 59 ? O ILE A 59 N GLU A 75 ? N GLU A 75 B 1 2 O PHE A 107 ? O PHE A 107 N ILE A 99 ? N ILE A 99 B 2 3 O ILE A 98 ? O ILE A 98 N GLU A 91 ? N GLU A 91 B 3 4 O VAL A 86 ? O VAL A 86 N GLY A 22 ? N GLY A 22 B 4 5 O GLU A 19 ? O GLU A 19 N THR A 132 ? N THR A 132 C 1 2 O VAL B 7 ? O VAL B 7 N LEU B 121 ? N LEU B 121 C 2 3 O PHE B 120 ? O PHE B 120 N GLY B 36 ? N GLY B 36 C 3 4 O PHE B 31 ? O PHE B 31 N ALA B 48 ? N ALA B 48 C 4 5 O HIS B 45 ? O HIS B 45 N ASN B 62 ? N ASN B 62 C 5 6 O ILE B 59 ? O ILE B 59 N GLU B 75 ? N GLU B 75 D 1 2 O PHE B 107 ? O PHE B 107 N ILE B 99 ? N ILE B 99 D 2 3 O ILE B 98 ? O ILE B 98 N GLU B 91 ? N GLU B 91 D 3 4 O VAL B 86 ? O VAL B 86 N GLY B 22 ? N GLY B 22 D 4 5 O CYS B 17 ? O CYS B 17 N GLU B 134 ? N GLU B 134 # _database_PDB_matrix.entry_id 1A78 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1A78 _atom_sites.fract_transf_matrix[1][1] 0.019305 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002439 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019608 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017903 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 CYS 61 61 61 CYS CYS A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 TRP 69 69 69 TRP TRP A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 MET 87 87 87 MET MET A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 CYS 89 89 89 CYS CYS A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 PHE 107 107 107 PHE PHE A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 GLU 134 134 134 GLU GLU A . n B 1 1 ALA 1 1 1 ALA ALA B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 ALA 3 3 3 ALA ALA B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 ALA 6 6 6 ALA ALA B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 THR 8 8 8 THR THR B . n B 1 9 ASN 9 9 9 ASN ASN B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 ASN 11 11 11 ASN ASN B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 LYS 13 13 13 LYS LYS B . n B 1 14 PRO 14 14 14 PRO PRO B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 HIS 16 16 16 HIS HIS B . n B 1 17 CYS 17 17 17 CYS CYS B . n B 1 18 VAL 18 18 18 VAL VAL B . n B 1 19 GLU 19 19 19 GLU GLU B . n B 1 20 ILE 20 20 20 ILE ILE B . n B 1 21 LYS 21 21 21 LYS LYS B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 PRO 25 25 25 PRO PRO B . n B 1 26 PRO 26 26 26 PRO PRO B . n B 1 27 ASP 27 27 27 ASP ASP B . n B 1 28 CYS 28 28 28 CYS CYS B . n B 1 29 LYS 29 29 29 LYS LYS B . n B 1 30 GLY 30 30 30 GLY GLY B . n B 1 31 PHE 31 31 31 PHE PHE B . n B 1 32 ALA 32 32 32 ALA ALA B . n B 1 33 VAL 33 33 33 VAL VAL B . n B 1 34 ASN 34 34 34 ASN ASN B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 GLY 36 36 36 GLY GLY B . n B 1 37 GLU 37 37 37 GLU GLU B . n B 1 38 ASP 38 38 38 ASP ASP B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 SER 40 40 40 SER SER B . n B 1 41 ASN 41 41 41 ASN ASN B . n B 1 42 PHE 42 42 42 PHE PHE B . n B 1 43 LEU 43 43 43 LEU LEU B . n B 1 44 LEU 44 44 44 LEU LEU B . n B 1 45 HIS 45 45 45 HIS HIS B . n B 1 46 PHE 46 46 46 PHE PHE B . n B 1 47 ASN 47 47 47 ASN ASN B . n B 1 48 ALA 48 48 48 ALA ALA B . n B 1 49 ARG 49 49 49 ARG ARG B . n B 1 50 PHE 50 50 50 PHE PHE B . n B 1 51 ASP 51 51 51 ASP ASP B . n B 1 52 LEU 52 52 52 LEU LEU B . n B 1 53 HIS 53 53 53 HIS HIS B . n B 1 54 GLY 54 54 54 GLY GLY B . n B 1 55 ASP 55 55 55 ASP ASP B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ASN 57 57 57 ASN ASN B . n B 1 58 LYS 58 58 58 LYS LYS B . n B 1 59 ILE 59 59 59 ILE ILE B . n B 1 60 VAL 60 60 60 VAL VAL B . n B 1 61 CYS 61 61 61 CYS CYS B . n B 1 62 ASN 62 62 62 ASN ASN B . n B 1 63 SER 63 63 63 SER SER B . n B 1 64 LYS 64 64 64 LYS LYS B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ALA 66 66 66 ALA ALA B . n B 1 67 ASP 67 67 67 ASP ASP B . n B 1 68 ALA 68 68 68 ALA ALA B . n B 1 69 TRP 69 69 69 TRP TRP B . n B 1 70 GLY 70 70 70 GLY GLY B . n B 1 71 SER 71 71 71 SER SER B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 GLN 73 73 73 GLN GLN B . n B 1 74 ARG 74 74 74 ARG ARG B . n B 1 75 GLU 75 75 75 GLU GLU B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 PHE 78 78 78 PHE PHE B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 PHE 80 80 80 PHE PHE B . n B 1 81 GLN 81 81 81 GLN GLN B . n B 1 82 GLN 82 82 82 GLN GLN B . n B 1 83 GLY 83 83 83 GLY GLY B . n B 1 84 ALA 84 84 84 ALA ALA B . n B 1 85 GLU 85 85 85 GLU GLU B . n B 1 86 VAL 86 86 86 VAL VAL B . n B 1 87 MET 87 87 87 MET MET B . n B 1 88 VAL 88 88 88 VAL VAL B . n B 1 89 CYS 89 89 89 CYS CYS B . n B 1 90 PHE 90 90 90 PHE PHE B . n B 1 91 GLU 91 91 91 GLU GLU B . n B 1 92 TYR 92 92 92 TYR TYR B . n B 1 93 GLN 93 93 93 GLN GLN B . n B 1 94 THR 94 94 94 THR THR B . n B 1 95 GLN 95 95 95 GLN GLN B . n B 1 96 LYS 96 96 96 LYS LYS B . n B 1 97 ILE 97 97 97 ILE ILE B . n B 1 98 ILE 98 98 98 ILE ILE B . n B 1 99 ILE 99 99 99 ILE ILE B . n B 1 100 LYS 100 100 100 LYS LYS B . n B 1 101 PHE 101 101 101 PHE PHE B . n B 1 102 SER 102 102 102 SER SER B . n B 1 103 SER 103 103 103 SER SER B . n B 1 104 GLY 104 104 104 GLY GLY B . n B 1 105 ASP 105 105 105 ASP ASP B . n B 1 106 GLN 106 106 106 GLN GLN B . n B 1 107 PHE 107 107 107 PHE PHE B . n B 1 108 SER 108 108 108 SER SER B . n B 1 109 PHE 109 109 109 PHE PHE B . n B 1 110 PRO 110 110 110 PRO PRO B . n B 1 111 VAL 111 111 111 VAL VAL B . n B 1 112 ARG 112 112 112 ARG ARG B . n B 1 113 LYS 113 113 113 LYS LYS B . n B 1 114 VAL 114 114 114 VAL VAL B . n B 1 115 LEU 115 115 115 LEU LEU B . n B 1 116 PRO 116 116 116 PRO PRO B . n B 1 117 SER 117 117 117 SER SER B . n B 1 118 ILE 118 118 118 ILE ILE B . n B 1 119 PRO 119 119 119 PRO PRO B . n B 1 120 PHE 120 120 120 PHE PHE B . n B 1 121 LEU 121 121 121 LEU LEU B . n B 1 122 SER 122 122 122 SER SER B . n B 1 123 LEU 123 123 123 LEU LEU B . n B 1 124 GLU 124 124 124 GLU GLU B . n B 1 125 GLY 125 125 125 GLY GLY B . n B 1 126 LEU 126 126 126 LEU LEU B . n B 1 127 ALA 127 127 127 ALA ALA B . n B 1 128 PHE 128 128 128 PHE PHE B . n B 1 129 LYS 129 129 129 LYS LYS B . n B 1 130 SER 130 130 130 SER SER B . n B 1 131 ILE 131 131 131 ILE ILE B . n B 1 132 THR 132 132 132 THR THR B . n B 1 133 THR 133 133 133 THR THR B . n B 1 134 GLU 134 134 134 GLU GLU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DTT 1 136 3 DTT DTT A . F 4 HOH 1 137 1 HOH HOH A . F 4 HOH 2 138 4 HOH HOH A . F 4 HOH 3 139 5 HOH HOH A . F 4 HOH 4 140 7 HOH HOH A . F 4 HOH 5 141 8 HOH HOH A . F 4 HOH 6 142 11 HOH HOH A . F 4 HOH 7 143 14 HOH HOH A . F 4 HOH 8 144 15 HOH HOH A . F 4 HOH 9 145 16 HOH HOH A . F 4 HOH 10 146 17 HOH HOH A . F 4 HOH 11 147 21 HOH HOH A . F 4 HOH 12 148 22 HOH HOH A . F 4 HOH 13 149 23 HOH HOH A . F 4 HOH 14 150 24 HOH HOH A . F 4 HOH 15 151 25 HOH HOH A . F 4 HOH 16 152 27 HOH HOH A . F 4 HOH 17 153 28 HOH HOH A . F 4 HOH 18 154 31 HOH HOH A . F 4 HOH 19 155 35 HOH HOH A . F 4 HOH 20 156 36 HOH HOH A . F 4 HOH 21 157 37 HOH HOH A . F 4 HOH 22 158 43 HOH HOH A . F 4 HOH 23 159 44 HOH HOH A . G 4 HOH 1 136 2 HOH HOH B . G 4 HOH 2 137 3 HOH HOH B . G 4 HOH 3 138 6 HOH HOH B . G 4 HOH 4 139 9 HOH HOH B . G 4 HOH 5 140 10 HOH HOH B . G 4 HOH 6 141 12 HOH HOH B . G 4 HOH 7 142 13 HOH HOH B . G 4 HOH 8 143 18 HOH HOH B . G 4 HOH 9 144 19 HOH HOH B . G 4 HOH 10 145 20 HOH HOH B . G 4 HOH 11 146 26 HOH HOH B . G 4 HOH 12 147 29 HOH HOH B . G 4 HOH 13 148 30 HOH HOH B . G 4 HOH 14 149 32 HOH HOH B . G 4 HOH 15 150 33 HOH HOH B . G 4 HOH 16 151 34 HOH HOH B . G 4 HOH 17 152 38 HOH HOH B . G 4 HOH 18 153 39 HOH HOH B . G 4 HOH 19 154 40 HOH HOH B . G 4 HOH 20 155 41 HOH HOH B . G 4 HOH 21 156 42 HOH HOH B . G 4 HOH 22 157 45 HOH HOH B . G 4 HOH 23 158 46 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_900027 _pdbx_molecule_features.name thiodigalactoside _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class 'Substrate analog' _pdbx_molecule_features.details 'oligosaccharide with S-glycosidic bond between monosaccharides, and with reducing-end-to-reducing-end glycosidic bond' # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_900027 C 2 PRD_900027 D # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-10-14 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 3 0 2020-08-12 6 'Structure model' 3 1 2023-08-02 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' Other 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Atomic model' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' 'Structure summary' 13 6 'Structure model' 'Database references' 14 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_database_status 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' struct_asym 14 4 'Structure model' struct_conn 15 4 'Structure model' struct_site 16 4 'Structure model' struct_site_gen 17 5 'Structure model' atom_site 18 5 'Structure model' chem_comp 19 5 'Structure model' pdbx_branch_scheme 20 5 'Structure model' pdbx_molecule_features 21 5 'Structure model' struct_conn 22 6 'Structure model' database_2 23 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.occupancy' 14 4 'Structure model' '_atom_site.type_symbol' 15 4 'Structure model' '_chem_comp.formula' 16 4 'Structure model' '_chem_comp.formula_weight' 17 4 'Structure model' '_chem_comp.id' 18 4 'Structure model' '_chem_comp.mon_nstd_flag' 19 4 'Structure model' '_chem_comp.name' 20 4 'Structure model' '_chem_comp.type' 21 4 'Structure model' '_entity.pdbx_description' 22 4 'Structure model' '_entity.src_method' 23 4 'Structure model' '_entity.type' 24 4 'Structure model' '_pdbx_database_status.process_site' 25 4 'Structure model' '_struct_asym.entity_id' 26 5 'Structure model' '_atom_site.B_iso_or_equiv' 27 5 'Structure model' '_atom_site.Cartn_x' 28 5 'Structure model' '_atom_site.Cartn_y' 29 5 'Structure model' '_atom_site.Cartn_z' 30 5 'Structure model' '_atom_site.auth_asym_id' 31 5 'Structure model' '_chem_comp.pdbx_synonyms' 32 5 'Structure model' '_pdbx_branch_scheme.pdb_asym_id' 33 5 'Structure model' '_struct_conn.pdbx_dist_value' 34 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 35 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 6 'Structure model' '_database_2.pdbx_DOI' 37 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 R-AXIS 'data reduction' 'V. 3.4' ? 3 R-AXIS 'data scaling' 'V 3.4' ? 4 X-PLOR phasing 3.1 ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 121 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 121 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 121 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 130.60 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 15.30 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? 114.41 102.28 2 1 ALA A 3 ? ? -123.05 -95.14 3 1 PRO A 79 ? ? -87.74 43.17 4 1 SER B 2 ? ? 177.62 173.24 5 1 PRO B 26 ? ? -77.38 36.46 6 1 ASP B 27 ? ? -171.61 19.58 7 1 ALA B 39 ? ? -71.21 21.07 8 1 PRO B 79 ? ? -67.07 17.64 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 YIO 1 E YIO 1 ? TDG 1 n C 2 GAL 2 E GAL 2 ? TDG 1 n D 2 YIO 1 F YIO 1 ? TDG 2 n D 2 GAL 2 F GAL 2 ? TDG 2 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal YIO 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp1SH # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/1,2,1/[a2112h-1b_1-5]/1-1/a1-b1*S*' WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-Galp1SH]{[(1+S)][b-D-Galp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 YIO _pdbx_entity_branch_link.atom_id_2 S1 _pdbx_entity_branch_link.leaving_atom_id_2 HS1 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 YIO 1 n 2 GAL 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2,3-DIHYDROXY-1,4-DITHIOBUTANE DTT 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1GAN _pdbx_initial_refinement_model.details 'PDB ENTRY 1GAN' #