HEADER LIM DOMAIN CONTAINING PROTEINS 15-MAR-98 1A7I TITLE AMINO-TERMINAL LIM DOMAIN FROM QUAIL CYSTEINE AND GLYCINE-RICH TITLE 2 PROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QCRP2 (LIM1); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL LIM DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COTURNIX JAPONICA; SOURCE 3 ORGANISM_COMMON: JAPANESE QUAIL; SOURCE 4 ORGANISM_TAXID: 93934; SOURCE 5 GENE: CSRP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS LIM DOMAIN CONTAINING PROTEINS, METAL-BINDING PROTEIN, ZINC FINGER EXPDTA SOLUTION NMR AUTHOR G.KONTAXIS,R.KONRAT,B.KRAEUTLER,R.WEISKIRCHEN,K.BISTER REVDAT 3 16-FEB-22 1A7I 1 REMARK LINK REVDAT 2 24-FEB-09 1A7I 1 VERSN REVDAT 1 27-MAY-98 1A7I 0 JRNL AUTH G.KONTAXIS,R.KONRAT,B.KRAUTLER,R.WEISKIRCHEN,K.BISTER JRNL TITL STRUCTURE AND INTRAMODULAR DYNAMICS OF THE AMINO-TERMINAL JRNL TITL 2 LIM DOMAIN FROM QUAIL CYSTEINE- AND GLYCINE-RICH PROTEIN JRNL TITL 3 CRP2. JRNL REF BIOCHEMISTRY V. 37 7127 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9585524 JRNL DOI 10.1021/BI973055V REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.WEISKIRCHEN,K.BISTER REMARK 1 TITL SUPPRESSION IN TRANSFORMED AVIAN FIBROBLASTS OF A GENE (CRP) REMARK 1 TITL 2 ENCODING A CYSTEINE-RICH PROTEIN CONTAINING LIM DOMAINS REMARK 1 REF GENE V. 8 2317 1993 REMARK 1 REFN ISSN 0378-1119 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1A7I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170489. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 299 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY; 2D X REMARK 210 -FILTERED NOESY; 3D TOCSY-HSQC; REMARK 210 3D NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, NMRPIPE, ANSIG, X-PLOR REMARK 210 METHOD USED : DG/SA/EM REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 15 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION, REMARK 210 MINIMUM ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASN A 3 REMARK 465 TRP A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 PRO A 68 REMARK 465 LYS A 69 REMARK 465 GLY A 70 REMARK 465 TYR A 71 REMARK 465 GLY A 72 REMARK 465 TYR A 73 REMARK 465 GLY A 74 REMARK 465 GLN A 75 REMARK 465 GLY A 76 REMARK 465 ALA A 77 REMARK 465 GLY A 78 REMARK 465 THR A 79 REMARK 465 LEU A 80 REMARK 465 ASN A 81 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 10 CA - CB - SG ANGL. DEV. = 8.9 DEGREES REMARK 500 CYS A 13 CA - CB - SG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 -80.70 -89.68 REMARK 500 CYS A 13 -83.96 -64.44 REMARK 500 TYR A 18 -76.88 -149.71 REMARK 500 HIS A 19 -61.69 -138.36 REMARK 500 GLU A 21 40.46 -91.01 REMARK 500 ASP A 26 -112.42 69.83 REMARK 500 VAL A 39 -83.68 -89.88 REMARK 500 ARG A 41 59.81 87.64 REMARK 500 ASP A 45 -145.24 -167.42 REMARK 500 SER A 46 47.07 -95.22 REMARK 500 THR A 47 -83.57 -84.40 REMARK 500 THR A 48 -135.05 -130.35 REMARK 500 VAL A 49 160.30 162.64 REMARK 500 ASP A 53 -119.76 66.99 REMARK 500 CYS A 58 -148.90 -88.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 82 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 10 SG REMARK 620 2 CYS A 13 SG 137.1 REMARK 620 3 HIS A 31 ND1 94.7 95.6 REMARK 620 4 CYS A 34 SG 102.5 95.7 140.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 83 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 37 SG REMARK 620 2 CYS A 40 SG 100.5 REMARK 620 3 CYS A 58 SG 102.7 127.7 REMARK 620 4 CYS A 61 SG 137.9 94.4 98.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZF1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ZN BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: ZF2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ZN BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 82 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 83 DBREF 1A7I A 2 81 UNP Q05158 CSRP2_COTJA 1 80 SEQRES 1 A 81 MET PRO ASN TRP GLY GLY GLY ASN LYS CYS GLY ALA CYS SEQRES 2 A 81 GLY ARG THR VAL TYR HIS ALA GLU GLU VAL GLN CYS ASP SEQRES 3 A 81 GLY ARG SER PHE HIS ARG CYS CYS PHE LEU CYS MET VAL SEQRES 4 A 81 CYS ARG LYS ASN LEU ASP SER THR THR VAL ALA ILE HIS SEQRES 5 A 81 ASP ALA GLU VAL TYR CYS LYS SER CYS TYR GLY LYS LYS SEQRES 6 A 81 TYR GLY PRO LYS GLY TYR GLY TYR GLY GLN GLY ALA GLY SEQRES 7 A 81 THR LEU ASN HET ZN A 82 1 HET ZN A 83 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 SER A 60 LYS A 65 1 6 SHEET 1 A 2 GLU A 22 CYS A 25 0 SHEET 2 A 2 ARG A 28 HIS A 31 -1 N PHE A 30 O VAL A 23 SHEET 1 B 2 ALA A 50 HIS A 52 0 SHEET 2 B 2 GLU A 55 TYR A 57 -1 N TYR A 57 O ALA A 50 LINK SG CYS A 10 ZN ZN A 82 1555 1555 2.25 LINK SG CYS A 13 ZN ZN A 82 1555 1555 2.25 LINK ND1 HIS A 31 ZN ZN A 82 1555 1555 2.06 LINK SG CYS A 34 ZN ZN A 82 1555 1555 2.35 LINK SG CYS A 37 ZN ZN A 83 1555 1555 2.36 LINK SG CYS A 40 ZN ZN A 83 1555 1555 2.22 LINK SG CYS A 58 ZN ZN A 83 1555 1555 2.25 LINK SG CYS A 61 ZN ZN A 83 1555 1555 2.34 SITE 1 ZF1 4 CYS A 10 CYS A 13 HIS A 31 CYS A 34 SITE 1 ZF2 4 CYS A 37 CYS A 40 CYS A 58 CYS A 61 SITE 1 AC1 4 CYS A 10 CYS A 13 HIS A 31 CYS A 34 SITE 1 AC2 4 CYS A 37 CYS A 40 CYS A 58 CYS A 61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000