data_1A7Y # _entry.id 1A7Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1A7Y pdb_00001a7y 10.2210/pdb1a7y/pdb WWPDB D_1000170505 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1A7Z unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN Z3' PDB 209D unspecified 'CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2' PDB 1UNM unspecified 'CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA' PDB 1I3W unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2' PDB 1FJA unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2' PDB 173D unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 2D55 unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSC unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1L1V unspecified 'SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)' PDB 316D unspecified 'CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSD unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2' PDB 1MNV unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2' PDB 1UNJ unspecified 'CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2' PDB 1OVF unspecified 'SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2' PDB 1QFI unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN X2' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1A7Y _pdbx_database_status.recvd_initial_deposition_date 1998-03-19 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schafer, M.' 1 'Sheldrick, G.M.' 2 'Bahner, I.' 3 'Lackner, H.' 4 # _citation.id primary _citation.title 'Crystal Structures of Actinomycin D and Actinomycin Z3.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 37 _citation.page_first 2381 _citation.page_last 2384 _citation.year 1998 _citation.journal_id_ASTM ACIEAY _citation.country GE _citation.journal_id_ISSN 1521-3773 _citation.journal_id_CSD 0179 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 29710967 _citation.pdbx_database_id_DOI '10.1002/(SICI)1521-3773(19980918)37:17<2381::AID-ANIE2381>3.0.CO;2-L' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schafer, M.' 1 ? primary 'Sheldrick, G.M.' 2 ? primary 'Bahner, I.' 3 ? primary 'Lackner, H.' 4 ? # _cell.entry_id 1A7Y _cell.length_a 15.737 _cell.length_b 15.887 _cell.length_c 25.156 _cell.angle_alpha 85.93 _cell.angle_beta 86.19 _cell.angle_gamma 69.86 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A7Y _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'ACTINOMYCIN D' 1259.447 3 ? ? ? ? 2 non-polymer syn 'ETHYL ACETATE' 88.105 7 ? ? ? ? 3 non-polymer syn METHANOL 32.042 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name DACTINOMYCIN # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)' _entity_poly.pdbx_seq_one_letter_code_can TVPGVXTVPGV _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 DVA n 1 3 PRO n 1 4 SAR n 1 5 MVA n 1 6 PXZ n 1 7 THR n 1 8 DVA n 1 9 PRO n 1 10 SAR n 1 11 MVA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'STREPTOMYCES ANTIBIOTICUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 1890 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00228 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession NOR00228 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1A7Y A 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 2 1 1A7Y B 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 3 1 1A7Y C 1 ? 11 ? NOR00228 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 EEE non-polymer . 'ETHYL ACETATE' ? 'C4 H8 O2' 88.105 MOH non-polymer . METHANOL ? 'C H4 O' 32.042 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O4' 296.277 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # _exptl.entry_id 1A7Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.50 _exptl_crystal.density_percent_sol 18.00 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PH 5.0' # _diffrn.id 1 _diffrn.ambient_temp 133 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'SIEMENS HI-STAR' _diffrn_detector.pdbx_collection_date 1997-11-03 _diffrn_detector.details COLLIMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRAPHITE(002)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type SIEMENS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1A7Y _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 999.000 _reflns.d_resolution_high 0.940 _reflns.number_obs 14126 _reflns.number_all ? _reflns.percent_possible_obs 95.1 _reflns.pdbx_Rmerge_I_obs 0.04400 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.9000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.380 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 0.94 _reflns_shell.d_res_low 1.05 _reflns_shell.percent_possible_all 90.5 _reflns_shell.Rmerge_I_obs 0.07200 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 11.900 _reflns_shell.pdbx_redundancy 2.85 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1A7Y _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 14126 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 0.94 _refine.ls_percent_reflns_obs 95.1 _refine.ls_R_factor_obs 0.058 _refine.ls_R_factor_all 0.057 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.068 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.900 _refine.ls_number_reflns_R_free 1401 _refine.ls_number_parameters 2875 _refine.ls_number_restraints 3689 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY 0.039' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case 'NO RESTRAINTS ON DISTANCES AND ANGLES' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1A7Y _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 318.00 _refine_analyze.occupancy_sum_non_hydrogen 314.00 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 270 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 314 _refine_hist.d_res_high 0.94 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.024 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.163 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.027 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1A7Y _pdbx_refine.R_factor_all_no_cutoff 0.057 _pdbx_refine.R_factor_obs_no_cutoff 0.058 _pdbx_refine.free_R_factor_no_cutoff 0.068 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 9.900 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1401 _pdbx_refine.R_factor_all_4sig_cutoff 0.054 _pdbx_refine.R_factor_obs_4sig_cutoff 0.055 _pdbx_refine.free_R_factor_4sig_cutoff 0.066 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 10.000 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1334 _pdbx_refine.number_reflns_obs_4sig_cutoff 13362 # _struct.entry_id 1A7Y _struct.title 'CRYSTAL STRUCTURE OF ACTINOMYCIN D' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1A7Y _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ACTINOMYCIN, ANTIBIOTIC, ANTITUMOR, ANTICANCER, CHROMOPHORE, DEPSIPEPTIDE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 1 C ? ? ? 1_555 A DVA 2 N ? ? A THR 1 A DVA 2 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale2 covale one ? A THR 1 OG1 ? ? ? 1_555 A MVA 5 C ? ? A THR 1 A MVA 5 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale3 covale one ? A THR 1 N ? ? ? 1_555 A PXZ 6 C0 ? ? A THR 1 A PXZ 6 1_555 ? ? ? ? ? ? ? 1.359 ? ? covale4 covale both ? A DVA 2 C ? ? ? 1_555 A PRO 3 N ? ? A DVA 2 A PRO 3 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale5 covale both ? A PRO 3 C ? ? ? 1_555 A SAR 4 N ? ? A PRO 3 A SAR 4 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale6 covale both ? A SAR 4 C ? ? ? 1_555 A MVA 5 N ? ? A SAR 4 A MVA 5 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale7 covale one ? A PXZ 6 "C0'" ? ? ? 1_555 A THR 7 N ? ? A PXZ 6 A THR 7 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale8 covale both ? A THR 7 C ? ? ? 1_555 A DVA 8 N ? ? A THR 7 A DVA 8 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale one ? A THR 7 OG1 ? ? ? 1_555 A MVA 11 C ? ? A THR 7 A MVA 11 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale10 covale both ? A DVA 8 C ? ? ? 1_555 A PRO 9 N ? ? A DVA 8 A PRO 9 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale11 covale both ? A PRO 9 C ? ? ? 1_555 A SAR 10 N ? ? A PRO 9 A SAR 10 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale12 covale both ? A SAR 10 C ? ? ? 1_555 A MVA 11 N ? ? A SAR 10 A MVA 11 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale13 covale both ? B THR 1 C ? ? ? 1_555 B DVA 2 N ? ? B THR 1 B DVA 2 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale14 covale one ? B THR 1 OG1 ? ? ? 1_555 B MVA 5 C ? ? B THR 1 B MVA 5 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale15 covale one ? B THR 1 N ? ? ? 1_555 B PXZ 6 C0 ? ? B THR 1 B PXZ 6 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale16 covale both ? B DVA 2 C ? ? ? 1_555 B PRO 3 N ? ? B DVA 2 B PRO 3 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale17 covale both ? B PRO 3 C ? ? ? 1_555 B SAR 4 N ? ? B PRO 3 B SAR 4 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale18 covale both ? B SAR 4 C ? ? ? 1_555 B MVA 5 N ? ? B SAR 4 B MVA 5 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale19 covale one ? B PXZ 6 "C0'" ? ? ? 1_555 B THR 7 N ? ? B PXZ 6 B THR 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale20 covale both ? B THR 7 C ? ? ? 1_555 B DVA 8 N ? ? B THR 7 B DVA 8 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale21 covale one ? B THR 7 OG1 ? ? ? 1_555 B MVA 11 C ? ? B THR 7 B MVA 11 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale22 covale both ? B DVA 8 C ? ? ? 1_555 B PRO 9 N ? ? B DVA 8 B PRO 9 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale23 covale both ? B PRO 9 C ? ? ? 1_555 B SAR 10 N ? ? B PRO 9 B SAR 10 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale24 covale both ? B SAR 10 C ? ? ? 1_555 B MVA 11 N ? ? B SAR 10 B MVA 11 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale25 covale both ? C THR 1 C ? ? ? 1_555 C DVA 2 N ? ? C THR 1 C DVA 2 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale26 covale one ? C THR 1 OG1 ? ? ? 1_555 C MVA 5 C ? ? C THR 1 C MVA 5 1_555 ? ? ? ? ? ? ? 1.369 ? ? covale27 covale one ? C THR 1 N ? ? ? 1_555 C PXZ 6 C0 ? ? C THR 1 C PXZ 6 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale28 covale both ? C DVA 2 C ? ? ? 1_555 C PRO 3 N ? ? C DVA 2 C PRO 3 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale29 covale both ? C PRO 3 C ? ? ? 1_555 C SAR 4 N ? ? C PRO 3 C SAR 4 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale30 covale both ? C SAR 4 C ? ? ? 1_555 C MVA 5 N ? ? C SAR 4 C MVA 5 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale31 covale one ? C PXZ 6 "C0'" ? ? ? 1_555 C THR 7 N ? ? C PXZ 6 C THR 7 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale32 covale both ? C THR 7 C ? ? ? 1_555 C DVA 8 N ? ? C THR 7 C DVA 8 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale33 covale one ? C THR 7 OG1 ? ? ? 1_555 C MVA 11 C ? ? C THR 7 C MVA 11 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale34 covale both ? C DVA 8 C ? ? ? 1_555 C PRO 9 N ? ? C DVA 8 C PRO 9 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale35 covale both ? C PRO 9 C ? ? ? 1_555 C SAR 10 N ? ? C PRO 9 C SAR 10 1_555 ? ? ? ? ? ? ? 1.365 ? ? covale36 covale both ? C SAR 10 C ? ? ? 1_555 C MVA 11 N ? ? C SAR 10 C MVA 11 1_555 ? ? ? ? ? ? ? 1.356 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 DVA 2 A . ? DVA 2 A PRO 3 A ? PRO 3 A 1 15.27 2 PRO 3 A . ? PRO 3 A SAR 4 A ? SAR 4 A 1 -4.60 3 DVA 8 A . ? DVA 8 A PRO 9 A ? PRO 9 A 1 19.55 4 PRO 9 A . ? PRO 9 A SAR 10 A ? SAR 10 A 1 -14.77 5 DVA 2 B . ? DVA 2 B PRO 3 B ? PRO 3 B 1 14.29 6 PRO 3 B . ? PRO 3 B SAR 4 B ? SAR 4 B 1 -7.25 7 DVA 8 B . ? DVA 8 B PRO 9 B ? PRO 9 B 1 18.82 8 PRO 9 B . ? PRO 9 B SAR 10 B ? SAR 10 B 1 -9.46 9 DVA 2 C . ? DVA 2 C PRO 3 C ? PRO 3 C 1 15.67 10 PRO 3 C . ? PRO 3 C SAR 4 C ? SAR 4 C 1 -17.54 11 DVA 8 C . ? DVA 8 C PRO 9 C ? PRO 9 C 1 10.99 12 PRO 9 C . ? PRO 9 C SAR 10 C ? SAR 10 C 1 -3.54 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EEE 104 ? 5 'BINDING SITE FOR RESIDUE EEE A 104' AC2 Software A EEE 105 ? 4 'BINDING SITE FOR RESIDUE EEE A 105' AC3 Software A EEE 106 ? 3 'BINDING SITE FOR RESIDUE EEE A 106' AC4 Software A EEE 107 ? 6 'BINDING SITE FOR RESIDUE EEE A 107' AC5 Software C EEE 101 ? 2 'BINDING SITE FOR RESIDUE EEE C 101' AC6 Software C EEE 102 ? 6 'BINDING SITE FOR RESIDUE EEE C 102' AC7 Software C EEE 103 ? 6 'BINDING SITE FOR RESIDUE EEE C 103' AC8 Software ? ? ? ? 17 'BINDING SITE FOR CHAIN A OF ACTINOMYCIN D' AC9 Software ? ? ? ? 20 'BINDING SITE FOR CHAIN B OF ACTINOMYCIN D' BC1 Software ? ? ? ? 21 'BINDING SITE FOR CHAIN C OF ACTINOMYCIN D' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DVA A 8 ? DVA A 8 . ? 1_555 ? 2 AC1 5 EEE E . ? EEE A 105 . ? 1_655 ? 3 AC1 5 PRO C 3 ? PRO C 3 . ? 1_555 ? 4 AC1 5 PXZ C 6 ? PXZ C 6 . ? 1_545 ? 5 AC1 5 EEE H . ? EEE C 101 . ? 1_545 ? 6 AC2 4 THR A 1 ? THR A 1 . ? 1_555 ? 7 AC2 4 THR A 7 ? THR A 7 . ? 1_545 ? 8 AC2 4 EEE D . ? EEE A 104 . ? 1_455 ? 9 AC2 4 SAR B 10 ? SAR B 10 . ? 1_555 ? 10 AC3 3 MVA A 5 ? MVA A 5 . ? 1_555 ? 11 AC3 3 THR A 7 ? THR A 7 . ? 1_545 ? 12 AC3 3 PXZ C 6 ? PXZ C 6 . ? 1_545 ? 13 AC4 6 PRO A 3 ? PRO A 3 . ? 1_555 ? 14 AC4 6 DVA B 2 ? DVA B 2 . ? 1_564 ? 15 AC4 6 PRO B 3 ? PRO B 3 . ? 1_564 ? 16 AC4 6 THR C 1 ? THR C 1 . ? 1_455 ? 17 AC4 6 PXZ C 6 ? PXZ C 6 . ? 1_455 ? 18 AC4 6 PRO C 9 ? PRO C 9 . ? 1_455 ? 19 AC5 2 EEE D . ? EEE A 104 . ? 1_565 ? 20 AC5 2 MVA C 5 ? MVA C 5 . ? 1_555 ? 21 AC6 6 SAR A 10 ? SAR A 10 . ? 1_554 ? 22 AC6 6 THR B 1 ? THR B 1 . ? 1_554 ? 23 AC6 6 MVA B 5 ? MVA B 5 . ? 1_554 ? 24 AC6 6 PXZ B 6 ? PXZ B 6 . ? 1_654 ? 25 AC6 6 PRO C 3 ? PRO C 3 . ? 1_555 ? 26 AC6 6 EEE J . ? EEE C 103 . ? 1_555 ? 27 AC7 6 MVA B 5 ? MVA B 5 . ? 1_554 ? 28 AC7 6 PXZ B 6 ? PXZ B 6 . ? 1_554 ? 29 AC7 6 DVA B 8 ? DVA B 8 . ? 1_564 ? 30 AC7 6 PRO C 9 ? PRO C 9 . ? 1_455 ? 31 AC7 6 MVA C 11 ? MVA C 11 . ? 1_555 ? 32 AC7 6 EEE I . ? EEE C 102 . ? 1_555 ? 33 AC8 17 EEE D . ? EEE A 104 . ? 1_555 ? 34 AC8 17 EEE E . ? EEE A 105 . ? 1_565 ? 35 AC8 17 EEE E . ? EEE A 105 . ? 1_555 ? 36 AC8 17 EEE F . ? EEE A 106 . ? 1_555 ? 37 AC8 17 EEE F . ? EEE A 106 . ? 1_565 ? 38 AC8 17 EEE G . ? EEE A 107 . ? 1_555 ? 39 AC8 17 THR B 1 ? THR B 1 . ? 1_555 ? 40 AC8 17 PXZ B 6 ? PXZ B 6 . ? 1_555 ? 41 AC8 17 THR B 7 ? THR B 7 . ? 1_555 ? 42 AC8 17 PRO B 9 ? PRO B 9 . ? 1_555 ? 43 AC8 17 PRO B 9 ? PRO B 9 . ? 1_565 ? 44 AC8 17 MVA B 11 ? MVA B 11 . ? 1_655 ? 45 AC8 17 PRO C 3 ? PRO C 3 . ? 1_555 ? 46 AC8 17 SAR C 4 ? SAR C 4 . ? 1_555 ? 47 AC8 17 MVA C 5 ? MVA C 5 . ? 1_455 ? 48 AC8 17 PXZ C 6 ? PXZ C 6 . ? 1_545 ? 49 AC8 17 EEE I . ? EEE C 102 . ? 1_556 ? 50 AC9 20 THR A 1 ? THR A 1 . ? 1_555 ? 51 AC9 20 PXZ A 6 ? PXZ A 6 . ? 1_555 ? 52 AC9 20 THR A 7 ? THR A 7 . ? 1_555 ? 53 AC9 20 PRO A 9 ? PRO A 9 . ? 1_455 ? 54 AC9 20 PRO A 9 ? PRO A 9 . ? 1_555 ? 55 AC9 20 MVA A 11 ? MVA A 11 . ? 1_555 ? 56 AC9 20 MVA A 11 ? MVA A 11 . ? 1_545 ? 57 AC9 20 EEE E . ? EEE A 105 . ? 1_555 ? 58 AC9 20 EEE G . ? EEE A 107 . ? 1_546 ? 59 AC9 20 DVA C 2 ? DVA C 2 . ? 1_456 ? 60 AC9 20 PXZ C 6 ? PXZ C 6 . ? 1_446 ? 61 AC9 20 DVA C 8 ? DVA C 8 . ? 1_456 ? 62 AC9 20 PRO C 9 ? PRO C 9 . ? 1_446 ? 63 AC9 20 SAR C 10 ? SAR C 10 . ? 1_446 ? 64 AC9 20 SAR C 10 ? SAR C 10 . ? 1_456 ? 65 AC9 20 MVA C 11 ? MVA C 11 . ? 1_546 ? 66 AC9 20 EEE I . ? EEE C 102 . ? 1_456 ? 67 AC9 20 EEE I . ? EEE C 102 . ? 1_556 ? 68 AC9 20 EEE J . ? EEE C 103 . ? 1_546 ? 69 AC9 20 EEE J . ? EEE C 103 . ? 1_556 ? 70 BC1 21 DVA A 2 ? DVA A 2 . ? 1_555 ? 71 BC1 21 PRO A 3 ? PRO A 3 . ? 1_555 ? 72 BC1 21 SAR A 4 ? SAR A 4 . ? 1_655 ? 73 BC1 21 SAR A 4 ? SAR A 4 . ? 1_565 ? 74 BC1 21 MVA A 5 ? MVA A 5 . ? 1_655 ? 75 BC1 21 PXZ A 6 ? PXZ A 6 . ? 1_655 ? 76 BC1 21 EEE D . ? EEE A 104 . ? 1_565 ? 77 BC1 21 EEE D . ? EEE A 104 . ? 1_555 ? 78 BC1 21 EEE F . ? EEE A 106 . ? 1_565 ? 79 BC1 21 EEE G . ? EEE A 107 . ? 1_655 ? 80 BC1 21 PRO B 3 ? PRO B 3 . ? 1_654 ? 81 BC1 21 PRO B 3 ? PRO B 3 . ? 1_664 ? 82 BC1 21 MVA B 5 ? MVA B 5 . ? 1_564 ? 83 BC1 21 PXZ B 6 ? PXZ B 6 . ? 1_654 ? 84 BC1 21 DVA B 8 ? DVA B 8 . ? 1_664 ? 85 BC1 21 DVA B 8 ? DVA B 8 . ? 1_564 ? 86 BC1 21 MVA B 11 ? MVA B 11 . ? 1_664 ? 87 BC1 21 EEE H . ? EEE C 101 . ? 1_555 ? 88 BC1 21 EEE I . ? EEE C 102 . ? 1_555 ? 89 BC1 21 EEE J . ? EEE C 103 . ? 1_555 ? 90 BC1 21 EEE J . ? EEE C 103 . ? 1_655 ? # _database_PDB_matrix.entry_id 1A7Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1A7Y _atom_sites.fract_transf_matrix[1][1] 0.063545 _atom_sites.fract_transf_matrix[1][2] -0.023304 _atom_sites.fract_transf_matrix[1][3] -0.003039 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.067044 _atom_sites.fract_transf_matrix[2][3] -0.003447 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039893 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 DVA 2 2 2 DVA DVA A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 SAR 4 4 4 SAR SAR A . n A 1 5 MVA 5 5 5 MVA MVA A . n A 1 6 PXZ 6 6 6 PXZ PXZ A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 DVA 8 8 8 DVA DVA A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 SAR 10 10 10 SAR SAR A . n A 1 11 MVA 11 11 11 MVA MVA A . n B 1 1 THR 1 1 1 THR THR B . n B 1 2 DVA 2 2 2 DVA DVA B . n B 1 3 PRO 3 3 3 PRO PRO B . n B 1 4 SAR 4 4 4 SAR SAR B . n B 1 5 MVA 5 5 5 MVA MVA B . n B 1 6 PXZ 6 6 6 PXZ PXZ B . n B 1 7 THR 7 7 7 THR THR B . n B 1 8 DVA 8 8 8 DVA DVA B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 SAR 10 10 10 SAR SAR B . n B 1 11 MVA 11 11 11 MVA MVA B . n C 1 1 THR 1 1 1 THR THR C . n C 1 2 DVA 2 2 2 DVA DVA C . n C 1 3 PRO 3 3 3 PRO PRO C . n C 1 4 SAR 4 4 4 SAR SAR C . n C 1 5 MVA 5 5 5 MVA MVA C . n C 1 6 PXZ 6 6 6 PXZ PXZ C . n C 1 7 THR 7 7 7 THR THR C . n C 1 8 DVA 8 8 8 DVA DVA C . n C 1 9 PRO 9 9 9 PRO PRO C . n C 1 10 SAR 10 10 10 SAR SAR C . n C 1 11 MVA 11 11 11 MVA MVA C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 EEE 1 104 104 EEE EEE A . E 2 EEE 1 105 105 EEE EEE A . F 2 EEE 1 106 106 EEE EEE A . G 2 EEE 1 107 107 EEE EEE A . H 2 EEE 1 101 101 EEE EEE C . I 2 EEE 1 102 102 EEE EEE C . J 2 EEE 1 103 103 EEE EEE C . K 3 MOH 1 108 108 MOH MOH C . # _pdbx_molecule_features.prd_id PRD_000001 _pdbx_molecule_features.name 'Actinomycin D' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000001 A 2 PRD_000001 B 3 PRD_000001 C # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,F,G 2 1 B 3 1 C,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-03-23 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 1 5 2018-03-07 7 'Structure model' 1 6 2019-11-13 8 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' Advisory 10 6 'Structure model' 'Data collection' 11 6 'Structure model' Other 12 7 'Structure model' 'Database references' 13 7 'Structure model' 'Derived calculations' 14 8 'Structure model' 'Atomic model' 15 8 'Structure model' 'Data collection' 16 8 'Structure model' 'Database references' 17 8 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' diffrn_source 2 6 'Structure model' pdbx_database_status 3 6 'Structure model' pdbx_validate_polymer_linkage 4 7 'Structure model' citation 5 7 'Structure model' citation_author 6 7 'Structure model' struct_conn 7 8 'Structure model' atom_site 8 8 'Structure model' atom_site_anisotrop 9 8 'Structure model' chem_comp_atom 10 8 'Structure model' chem_comp_bond 11 8 'Structure model' database_2 12 8 'Structure model' struct_conn 13 8 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_diffrn_source.source' 2 6 'Structure model' '_pdbx_database_status.process_site' 3 7 'Structure model' '_citation.journal_id_ASTM' 4 7 'Structure model' '_citation.journal_id_CSD' 5 7 'Structure model' '_citation.journal_id_ISSN' 6 7 'Structure model' '_citation.page_last' 7 7 'Structure model' '_citation.pdbx_database_id_PubMed' 8 7 'Structure model' '_citation.title' 9 7 'Structure model' '_citation_author.name' 10 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 8 'Structure model' '_atom_site.auth_atom_id' 12 8 'Structure model' '_atom_site.label_atom_id' 13 8 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 14 8 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 15 8 'Structure model' '_database_2.pdbx_DOI' 16 8 'Structure model' '_database_2.pdbx_database_accession' 17 8 'Structure model' '_struct_conn.pdbx_dist_value' 18 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 8 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 8 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 8 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 8 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 8 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 8 'Structure model' '_struct_conn.ptnr2_label_seq_id' 25 8 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 8 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 8 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 'model building' . ? 1 SHELXL-97 refinement . ? 2 SAINT 'data reduction' . ? 3 SADABS 'data scaling' . ? 4 SHELXL-97 phasing . ? 5 # _pdbx_entry_details.entry_id 1A7Y _pdbx_entry_details.compound_details ;ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DVA N N N N 1 DVA CA C N R 2 DVA CB C N N 3 DVA CG1 C N N 4 DVA CG2 C N N 5 DVA C C N N 6 DVA O O N N 7 DVA OXT O N N 8 DVA H H N N 9 DVA H2 H N N 10 DVA HA H N N 11 DVA HB H N N 12 DVA HG11 H N N 13 DVA HG12 H N N 14 DVA HG13 H N N 15 DVA HG21 H N N 16 DVA HG22 H N N 17 DVA HG23 H N N 18 DVA HXT H N N 19 EEE C1 C N N 20 EEE C2 C N N 21 EEE O1 O N N 22 EEE O2 O N N 23 EEE C3 C N N 24 EEE C4 C N N 25 EEE H21 H N N 26 EEE H22 H N N 27 EEE H23 H N N 28 EEE H31 H N N 29 EEE H32 H N N 30 EEE H41 H N N 31 EEE H42 H N N 32 EEE H43 H N N 33 MOH C C N N 34 MOH O O N N 35 MOH H1 H N N 36 MOH H2 H N N 37 MOH H3 H N N 38 MOH HO H N N 39 MVA N N N N 40 MVA CN C N N 41 MVA CA C N S 42 MVA CB C N N 43 MVA CG1 C N N 44 MVA CG2 C N N 45 MVA C C N N 46 MVA O O N N 47 MVA OXT O N N 48 MVA H H N N 49 MVA HN1 H N N 50 MVA HN2 H N N 51 MVA HN3 H N N 52 MVA HA H N N 53 MVA HB H N N 54 MVA HG11 H N N 55 MVA HG12 H N N 56 MVA HG13 H N N 57 MVA HG21 H N N 58 MVA HG22 H N N 59 MVA HG23 H N N 60 MVA HXT H N N 61 PRO N N N N 62 PRO CA C N S 63 PRO C C N N 64 PRO O O N N 65 PRO CB C N N 66 PRO CG C N N 67 PRO CD C N N 68 PRO OXT O N N 69 PRO H H N N 70 PRO HA H N N 71 PRO HB2 H N N 72 PRO HB3 H N N 73 PRO HG2 H N N 74 PRO HG3 H N N 75 PRO HD2 H N N 76 PRO HD3 H N N 77 PRO HXT H N N 78 PXZ C1 C Y N 79 PXZ C0 C N N 80 PXZ O1 O N N 81 PXZ C2 C Y N 82 PXZ N2 N N N 83 PXZ C3 C Y N 84 PXZ O3 O N N 85 PXZ C4 C Y N 86 PXZ O5 O Y N 87 PXZ C6 C Y N 88 PXZ C7 C Y N 89 PXZ C8 C Y N 90 PXZ C9 C Y N 91 PXZ "C0'" C N N 92 PXZ "O1'" O N N 93 PXZ N10 N Y N 94 PXZ C11 C Y N 95 PXZ C12 C Y N 96 PXZ C13 C Y N 97 PXZ C14 C Y N 98 PXZ C15 C N N 99 PXZ C16 C N N 100 PXZ H1 H N N 101 PXZ HN21 H N N 102 PXZ HN22 H N N 103 PXZ H7 H N N 104 PXZ H8 H N N 105 PXZ "H1'" H N N 106 PXZ H151 H N N 107 PXZ H152 H N N 108 PXZ H153 H N N 109 PXZ H161 H N N 110 PXZ H162 H N N 111 PXZ H163 H N N 112 SAR N N N N 113 SAR CA C N N 114 SAR C C N N 115 SAR O O N N 116 SAR CN C N N 117 SAR OXT O N N 118 SAR H H N N 119 SAR HA2 H N N 120 SAR HA3 H N N 121 SAR HN1 H N N 122 SAR HN2 H N N 123 SAR HN3 H N N 124 SAR HXT H N N 125 THR N N N N 126 THR CA C N S 127 THR C C N N 128 THR O O N N 129 THR CB C N R 130 THR OG1 O N N 131 THR CG2 C N N 132 THR OXT O N N 133 THR H H N N 134 THR H2 H N N 135 THR HA H N N 136 THR HB H N N 137 THR HG1 H N N 138 THR HG21 H N N 139 THR HG22 H N N 140 THR HG23 H N N 141 THR HXT H N N 142 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DVA N CA sing N N 1 DVA N H sing N N 2 DVA N H2 sing N N 3 DVA CA CB sing N N 4 DVA CA C sing N N 5 DVA CA HA sing N N 6 DVA CB CG1 sing N N 7 DVA CB CG2 sing N N 8 DVA CB HB sing N N 9 DVA CG1 HG11 sing N N 10 DVA CG1 HG12 sing N N 11 DVA CG1 HG13 sing N N 12 DVA CG2 HG21 sing N N 13 DVA CG2 HG22 sing N N 14 DVA CG2 HG23 sing N N 15 DVA C O doub N N 16 DVA C OXT sing N N 17 DVA OXT HXT sing N N 18 EEE C1 C2 sing N N 19 EEE C1 O1 doub N N 20 EEE C1 O2 sing N N 21 EEE C2 H21 sing N N 22 EEE C2 H22 sing N N 23 EEE C2 H23 sing N N 24 EEE O2 C3 sing N N 25 EEE C3 C4 sing N N 26 EEE C3 H31 sing N N 27 EEE C3 H32 sing N N 28 EEE C4 H41 sing N N 29 EEE C4 H42 sing N N 30 EEE C4 H43 sing N N 31 MOH C O sing N N 32 MOH C H1 sing N N 33 MOH C H2 sing N N 34 MOH C H3 sing N N 35 MOH O HO sing N N 36 MVA N CN sing N N 37 MVA N CA sing N N 38 MVA N H sing N N 39 MVA CN HN1 sing N N 40 MVA CN HN2 sing N N 41 MVA CN HN3 sing N N 42 MVA CA CB sing N N 43 MVA CA C sing N N 44 MVA CA HA sing N N 45 MVA CB CG1 sing N N 46 MVA CB CG2 sing N N 47 MVA CB HB sing N N 48 MVA CG1 HG11 sing N N 49 MVA CG1 HG12 sing N N 50 MVA CG1 HG13 sing N N 51 MVA CG2 HG21 sing N N 52 MVA CG2 HG22 sing N N 53 MVA CG2 HG23 sing N N 54 MVA C O doub N N 55 MVA C OXT sing N N 56 MVA OXT HXT sing N N 57 PRO N CA sing N N 58 PRO N CD sing N N 59 PRO N H sing N N 60 PRO CA C sing N N 61 PRO CA CB sing N N 62 PRO CA HA sing N N 63 PRO C O doub N N 64 PRO C OXT sing N N 65 PRO CB CG sing N N 66 PRO CB HB2 sing N N 67 PRO CB HB3 sing N N 68 PRO CG CD sing N N 69 PRO CG HG2 sing N N 70 PRO CG HG3 sing N N 71 PRO CD HD2 sing N N 72 PRO CD HD3 sing N N 73 PRO OXT HXT sing N N 74 PXZ C1 C0 sing N N 75 PXZ C1 C2 doub Y N 76 PXZ C1 C11 sing Y N 77 PXZ C0 O1 doub N N 78 PXZ C0 H1 sing N N 79 PXZ C2 N2 sing N N 80 PXZ C2 C3 sing Y N 81 PXZ N2 HN21 sing N N 82 PXZ N2 HN22 sing N N 83 PXZ C3 O3 doub N N 84 PXZ C3 C4 sing Y N 85 PXZ C4 C12 doub Y N 86 PXZ C4 C15 sing N N 87 PXZ O5 C12 sing Y N 88 PXZ O5 C13 sing Y N 89 PXZ C6 C7 doub Y N 90 PXZ C6 C13 sing Y N 91 PXZ C6 C16 sing N N 92 PXZ C7 C8 sing Y N 93 PXZ C7 H7 sing N N 94 PXZ C8 C9 doub Y N 95 PXZ C8 H8 sing N N 96 PXZ C9 "C0'" sing N N 97 PXZ C9 C14 sing Y N 98 PXZ "C0'" "O1'" doub N N 99 PXZ "C0'" "H1'" sing N N 100 PXZ N10 C11 doub Y N 101 PXZ N10 C14 sing Y N 102 PXZ C11 C12 sing Y N 103 PXZ C13 C14 doub Y N 104 PXZ C15 H151 sing N N 105 PXZ C15 H152 sing N N 106 PXZ C15 H153 sing N N 107 PXZ C16 H161 sing N N 108 PXZ C16 H162 sing N N 109 PXZ C16 H163 sing N N 110 SAR N CA sing N N 111 SAR N CN sing N N 112 SAR N H sing N N 113 SAR CA C sing N N 114 SAR CA HA2 sing N N 115 SAR CA HA3 sing N N 116 SAR C O doub N N 117 SAR C OXT sing N N 118 SAR CN HN1 sing N N 119 SAR CN HN2 sing N N 120 SAR CN HN3 sing N N 121 SAR OXT HXT sing N N 122 THR N CA sing N N 123 THR N H sing N N 124 THR N H2 sing N N 125 THR CA C sing N N 126 THR CA CB sing N N 127 THR CA HA sing N N 128 THR C O doub N N 129 THR C OXT sing N N 130 THR CB OG1 sing N N 131 THR CB CG2 sing N N 132 THR CB HB sing N N 133 THR OG1 HG1 sing N N 134 THR CG2 HG21 sing N N 135 THR CG2 HG22 sing N N 136 THR CG2 HG23 sing N N 137 THR OXT HXT sing N N 138 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ETHYL ACETATE' EEE 3 METHANOL MOH #