data_1A7Z # _entry.id 1A7Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1A7Z pdb_00001a7z 10.2210/pdb1a7z/pdb WWPDB D_1000170506 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-03-23 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 1 5 2018-03-07 7 'Structure model' 1 6 2019-11-13 8 'Structure model' 2 0 2023-11-15 9 'Structure model' 3 0 2024-07-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' Advisory 10 6 'Structure model' 'Data collection' 11 6 'Structure model' Other 12 7 'Structure model' 'Database references' 13 7 'Structure model' 'Derived calculations' 14 8 'Structure model' 'Atomic model' 15 8 'Structure model' 'Data collection' 16 8 'Structure model' 'Database references' 17 8 'Structure model' 'Derived calculations' 18 9 'Structure model' 'Data collection' 19 9 'Structure model' 'Derived calculations' 20 9 'Structure model' 'Non-polymer description' 21 9 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' diffrn_source 2 6 'Structure model' pdbx_database_status 3 6 'Structure model' pdbx_validate_polymer_linkage 4 7 'Structure model' citation 5 7 'Structure model' citation_author 6 7 'Structure model' struct_conn 7 8 'Structure model' atom_site 8 8 'Structure model' atom_site_anisotrop 9 8 'Structure model' chem_comp_atom 10 8 'Structure model' chem_comp_bond 11 8 'Structure model' database_2 12 8 'Structure model' struct_conn 13 8 'Structure model' struct_site 14 9 'Structure model' chem_comp 15 9 'Structure model' chem_comp_atom 16 9 'Structure model' chem_comp_bond 17 9 'Structure model' entity 18 9 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_diffrn_source.source' 2 6 'Structure model' '_pdbx_database_status.process_site' 3 7 'Structure model' '_citation.journal_id_ASTM' 4 7 'Structure model' '_citation.journal_id_CSD' 5 7 'Structure model' '_citation.journal_id_ISSN' 6 7 'Structure model' '_citation.page_last' 7 7 'Structure model' '_citation.pdbx_database_id_PubMed' 8 7 'Structure model' '_citation.title' 9 7 'Structure model' '_citation_author.name' 10 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 8 'Structure model' '_atom_site.auth_atom_id' 12 8 'Structure model' '_atom_site.label_atom_id' 13 8 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 14 8 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 15 8 'Structure model' '_database_2.pdbx_DOI' 16 8 'Structure model' '_database_2.pdbx_database_accession' 17 8 'Structure model' '_struct_conn.pdbx_dist_value' 18 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 8 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 8 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 8 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 8 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 8 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 8 'Structure model' '_struct_conn.ptnr2_label_seq_id' 25 8 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 8 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 8 'Structure model' '_struct_site.pdbx_auth_seq_id' 28 9 'Structure model' '_chem_comp.formula' 29 9 'Structure model' '_chem_comp.formula_weight' 30 9 'Structure model' '_entity.formula_weight' 31 9 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1A7Z _pdbx_database_status.recvd_initial_deposition_date 1998-03-19 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 209D unspecified 'CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2' PDB 1UNM unspecified 'CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA' PDB 1I3W unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2' PDB 1A7Y unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D' PDB 1FJA unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2' PDB 173D unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 2D55 unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSC unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1L1V unspecified 'SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)' PDB 316D unspecified 'CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2' PDB 1DSD unspecified 'SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2' PDB 1MNV unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2' PDB 1UNJ unspecified 'CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2' PDB 1OVF unspecified 'SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2' PDB 1QFI unspecified 'CRYSTAL STRUCTURE OF ACTINOMYCIN X2' # _audit_author.name 'Schafer, M.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal Structures of Actinomycin D and Actinomycin Z3.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 37 _citation.page_first 2381 _citation.page_last 2384 _citation.year 1998 _citation.journal_id_ASTM ACIEAY _citation.country GE _citation.journal_id_ISSN 1521-3773 _citation.journal_id_CSD 0179 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 29710967 _citation.pdbx_database_id_DOI '10.1002/(SICI)1521-3773(19980918)37:17<2381::AID-ANIE2381>3.0.CO;2-L' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schafer, M.' 1 ? primary 'Sheldrick, G.M.' 2 ? primary 'Bahner, I.' 3 ? primary 'Lackner, H.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'ACTINOMYCIN Z3' 1355.875 2 ? ? ? ? 2 non-polymer syn BENZENE 78.112 20 ? ? ? ? 3 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(CTH)(DVA)(POM)(SAR)(MAA)(PXZ)T(DVA)(H5M)(SAR)(MVA)' _entity_poly.pdbx_seq_one_letter_code_can TVPGAXTVPGV _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BENZENE BNZ 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CTH n 1 2 DVA n 1 3 POM n 1 4 SAR n 1 5 MAA n 1 6 PXZ n 1 7 THR n 1 8 DVA n 1 9 H5M n 1 10 SAR n 1 11 MVA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'STREPTOMYCES FRADIAE' _entity_src_nat.pdbx_ncbi_taxonomy_id 1906 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BNZ non-polymer . BENZENE ? 'C6 H6' 78.112 CTH 'L-peptide linking' n 4-CHLOROTHREONINE ? 'C4 H8 Cl N O3' 153.564 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 H5M 'L-peptide linking' n TRANS-3-HYDROXY-5-METHYLPROLINE ? 'C6 H11 N O3' 145.156 HOH non-polymer . WATER ? 'H2 O' 18.015 MAA 'L-peptide linking' n N-methyl-L-alanine ? 'C4 H9 N O2' 103.120 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 POM 'L-peptide linking' n CIS-5-METHYL-4-OXOPROLINE ? 'C6 H9 N O3' 143.141 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O6' 328.276 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CTH 1 1 1 CTH CTH A . n A 1 2 DVA 2 2 2 DVA DVA A . n A 1 3 POM 3 3 3 POM POM A . n A 1 4 SAR 4 4 4 SAR SAR A . n A 1 5 MAA 5 5 5 MAA MAA A . n A 1 6 PXZ 6 6 6 PXZ PXZ A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 DVA 8 8 8 DVA DVA A . n A 1 9 H5M 9 9 9 H5M H5M A . n A 1 10 SAR 10 10 10 SAR SAR A . n A 1 11 MVA 11 11 11 MVA MVA A . n B 1 1 CTH 1 1 1 CTH CTH B . n B 1 2 DVA 2 2 2 DVA DVA B . n B 1 3 POM 3 3 3 POM POM B . n B 1 4 SAR 4 4 4 SAR SAR B . n B 1 5 MAA 5 5 5 MAA MAA B . n B 1 6 PXZ 6 6 6 PXZ PXZ B . n B 1 7 THR 7 7 7 THR THR B . n B 1 8 DVA 8 8 8 DVA DVA B . n B 1 9 H5M 9 9 9 H5M H5M B . n B 1 10 SAR 10 10 10 SAR SAR B . n B 1 11 MVA 11 11 11 MVA MVA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BNZ 1 101 101 BNZ BNZ A . D 2 BNZ 1 109 109 BNZ BNZ A . E 2 BNZ 1 110 110 BNZ BNZ A . F 2 BNZ 1 115 115 BNZ BNZ A . G 2 BNZ 1 116 116 BNZ BNZ A . H 2 BNZ 1 118 118 BNZ BNZ A . I 2 BNZ 1 119 119 BNZ BNZ A . J 2 BNZ 1 120 120 BNZ BNZ A . K 2 BNZ 1 102 102 BNZ BNZ B . L 2 BNZ 1 103 103 BNZ BNZ B . M 2 BNZ 1 104 104 BNZ BNZ B . N 2 BNZ 1 105 105 BNZ BNZ B . O 2 BNZ 1 106 106 BNZ BNZ B . P 2 BNZ 1 107 107 BNZ BNZ B . Q 2 BNZ 1 108 108 BNZ BNZ B . R 2 BNZ 1 111 111 BNZ BNZ B . S 2 BNZ 1 112 112 BNZ BNZ B . T 2 BNZ 1 113 113 BNZ BNZ B . U 2 BNZ 1 114 114 BNZ BNZ B . V 2 BNZ 1 117 117 BNZ BNZ B . W 3 HOH 1 2001 2001 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 'model building' . ? 1 SHELXL-97 refinement . ? 2 SAINT 'data reduction' . ? 3 SADABS 'data scaling' . ? 4 SHELXL-97 phasing . ? 5 # _cell.entry_id 1A7Z _cell.length_a 14.803 _cell.length_b 24.780 _cell.length_c 65.059 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A7Z _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1A7Z _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_percent_sol 49.00 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PH 7' # _diffrn.id 1 _diffrn.ambient_temp 173 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'SIEMENS HI-STAR' _diffrn_detector.pdbx_collection_date 1997-09-22 _diffrn_detector.details COLLIMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRAPHITE(002)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type SIEMENS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1A7Z _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 32.450 _reflns.d_resolution_high 0.950 _reflns.number_obs 15653 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.06000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.1700 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.060 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 0.95 _reflns_shell.d_res_low 1.05 _reflns_shell.percent_possible_all 98.1 _reflns_shell.Rmerge_I_obs 0.35000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.930 _reflns_shell.pdbx_redundancy 4.85 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1A7Z _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 15653 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.45 _refine.ls_d_res_high 0.95 _refine.ls_percent_reflns_obs 99.4 _refine.ls_R_factor_obs 0.080 _refine.ls_R_factor_all 0.081 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.097 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 1568 _refine.ls_number_parameters 3024 _refine.ls_number_restraints 5470 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY 0.026' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case 'NO RESTRAINTS ON DISTANCES AND ANGLES' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1A7Z _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 5 _refine_analyze.occupancy_sum_hydrogen 286.00 _refine_analyze.occupancy_sum_non_hydrogen 307.00 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 186 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 120 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 307 _refine_hist.d_res_high 0.95 _refine_hist.d_res_low 32.45 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.016 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.024 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.032 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1A7Z _pdbx_refine.R_factor_all_no_cutoff 0.081 _pdbx_refine.R_factor_obs_no_cutoff 0.080 _pdbx_refine.free_R_factor_no_cutoff 0.097 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 10.000 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1568 _pdbx_refine.R_factor_all_4sig_cutoff 0.067 _pdbx_refine.R_factor_obs_4sig_cutoff 0.067 _pdbx_refine.free_R_factor_4sig_cutoff 0.082 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 10.100 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1340 _pdbx_refine.number_reflns_obs_4sig_cutoff 13243 # _database_PDB_matrix.entry_id 1A7Z _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1A7Z _struct.title 'CRYSTAL STRUCTURE OF ACTINOMYCIN Z3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1A7Z _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ACTINOMYCIN D, ACTINOMYCIN, ANTICANCER, ANTITUMOR, CHROMOPHORE, DEPSIPEPTIDE, ANTIBIOTIC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? U N N 2 ? V N N 2 ? W N N 3 ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00237 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession NOR00237 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1A7Z A 1 ? 11 ? NOR00237 1 ? 11 ? 1 11 2 1 1A7Z B 1 ? 11 ? NOR00237 1 ? 11 ? 1 11 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,W 2 1 B,K,L,M,N,O,P,Q,R,S,T,U,V # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A CTH 1 C ? ? ? 1_555 A DVA 2 N ? ? A CTH 1 A DVA 2 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale2 covale one ? A CTH 1 OG1 ? ? ? 1_555 A MAA 5 C ? ? A CTH 1 A MAA 5 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale3 covale both ? A CTH 1 N ? ? ? 1_555 A PXZ 6 C0 ? ? A CTH 1 A PXZ 6 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale4 covale both ? A DVA 2 C ? ? ? 1_555 A POM 3 N ? ? A DVA 2 A POM 3 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale5 covale both ? A POM 3 C ? ? ? 1_555 A SAR 4 N ? ? A POM 3 A SAR 4 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale6 covale both ? A SAR 4 C ? ? ? 1_555 A MAA 5 N ? ? A SAR 4 A MAA 5 1_555 ? ? ? ? ? ? ? 1.369 ? ? covale7 covale both ? A PXZ 6 "C0'" ? ? ? 1_555 A THR 7 N ? ? A PXZ 6 A THR 7 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale8 covale both ? A THR 7 C ? ? ? 1_555 A DVA 8 N ? ? A THR 7 A DVA 8 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale9 covale one ? A THR 7 OG1 ? ? ? 1_555 A MVA 11 C ? ? A THR 7 A MVA 11 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale10 covale both ? A DVA 8 C ? ? ? 1_555 A H5M 9 N ? ? A DVA 8 A H5M 9 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale11 covale both ? A H5M 9 C ? ? ? 1_555 A SAR 10 N ? ? A H5M 9 A SAR 10 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale12 covale both ? A SAR 10 C ? ? ? 1_555 A MVA 11 N ? ? A SAR 10 A MVA 11 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale13 covale both ? B CTH 1 C ? ? ? 1_555 B DVA 2 N ? ? B CTH 1 B DVA 2 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale14 covale one ? B CTH 1 OG1 ? ? ? 1_555 B MAA 5 C ? ? B CTH 1 B MAA 5 1_555 ? ? ? ? ? ? ? 1.368 ? ? covale15 covale both ? B CTH 1 N ? ? ? 1_555 B PXZ 6 C0 ? ? B CTH 1 B PXZ 6 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale16 covale both ? B DVA 2 C ? ? ? 1_555 B POM 3 N ? ? B DVA 2 B POM 3 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale17 covale both ? B POM 3 C ? ? ? 1_555 B SAR 4 N ? ? B POM 3 B SAR 4 1_555 ? ? ? ? ? ? ? 1.363 ? ? covale18 covale both ? B SAR 4 C ? ? ? 1_555 B MAA 5 N ? ? B SAR 4 B MAA 5 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale19 covale both ? B PXZ 6 "C0'" ? ? ? 1_555 B THR 7 N ? ? B PXZ 6 B THR 7 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale20 covale both ? B THR 7 C ? ? ? 1_555 B DVA 8 N ? ? B THR 7 B DVA 8 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale21 covale one ? B THR 7 OG1 ? ? ? 1_555 B MVA 11 C ? ? B THR 7 B MVA 11 1_555 ? ? ? ? ? ? ? 1.361 ? ? covale22 covale both ? B DVA 8 C ? ? ? 1_555 B H5M 9 N ? ? B DVA 8 B H5M 9 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale23 covale both ? B H5M 9 C ? ? ? 1_555 B SAR 10 N ? ? B H5M 9 B SAR 10 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale24 covale both ? B SAR 10 C ? ? ? 1_555 B MVA 11 N ? ? B SAR 10 B MVA 11 1_555 ? ? ? ? ? ? ? 1.363 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 DVA 2 A . ? DVA 2 A POM 3 A ? POM 3 A 1 21.50 2 POM 3 A . ? POM 3 A SAR 4 A ? SAR 4 A 1 -17.30 3 DVA 8 A . ? DVA 8 A H5M 9 A ? H5M 9 A 1 24.13 4 H5M 9 A . ? H5M 9 A SAR 10 A ? SAR 10 A 1 -12.45 5 DVA 2 B . ? DVA 2 B POM 3 B ? POM 3 B 1 20.03 6 POM 3 B . ? POM 3 B SAR 4 B ? SAR 4 B 1 -18.19 7 DVA 8 B . ? DVA 8 B H5M 9 B ? H5M 9 B 1 25.97 8 H5M 9 B . ? H5M 9 B SAR 10 B ? SAR 10 B 1 -14.68 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BNZ 101 ? 5 'BINDING SITE FOR RESIDUE BNZ A 101' AC2 Software A BNZ 109 ? 6 'BINDING SITE FOR RESIDUE BNZ A 109' AC3 Software A BNZ 110 ? 4 'BINDING SITE FOR RESIDUE BNZ A 110' AC4 Software A BNZ 115 ? 1 'BINDING SITE FOR RESIDUE BNZ A 115' AC5 Software A BNZ 116 ? 7 'BINDING SITE FOR RESIDUE BNZ A 116' AC6 Software A BNZ 118 ? 7 'BINDING SITE FOR RESIDUE BNZ A 118' AC7 Software A BNZ 119 ? 9 'BINDING SITE FOR RESIDUE BNZ A 119' AC8 Software A BNZ 120 ? 1 'BINDING SITE FOR RESIDUE BNZ A 120' AC9 Software B BNZ 102 ? 4 'BINDING SITE FOR RESIDUE BNZ B 102' BC1 Software B BNZ 103 ? 5 'BINDING SITE FOR RESIDUE BNZ B 103' BC2 Software B BNZ 104 ? 4 'BINDING SITE FOR RESIDUE BNZ B 104' BC3 Software B BNZ 105 ? 4 'BINDING SITE FOR RESIDUE BNZ B 105' BC4 Software B BNZ 106 ? 4 'BINDING SITE FOR RESIDUE BNZ B 106' BC5 Software B BNZ 107 ? 1 'BINDING SITE FOR RESIDUE BNZ B 107' BC6 Software B BNZ 108 ? 3 'BINDING SITE FOR RESIDUE BNZ B 108' BC7 Software B BNZ 111 ? 1 'BINDING SITE FOR RESIDUE BNZ B 111' BC8 Software B BNZ 112 ? 3 'BINDING SITE FOR RESIDUE BNZ B 112' BC9 Software B BNZ 113 ? 3 'BINDING SITE FOR RESIDUE BNZ B 113' CC1 Software B BNZ 114 ? 2 'BINDING SITE FOR RESIDUE BNZ B 114' CC2 Software B BNZ 117 ? 8 'BINDING SITE FOR RESIDUE BNZ B 117' CC3 Software ? ? ? ? 20 'BINDING SITE FOR CHAIN A OF ACTINOMYCIN Z3' CC4 Software ? ? ? ? 16 'BINDING SITE FOR CHAIN B OF ACTINOMYCIN Z3' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CTH A 1 ? CTH A 1 . ? 1_555 ? 2 AC1 5 PXZ A 6 ? PXZ A 6 . ? 1_555 ? 3 AC1 5 DVA A 8 ? DVA A 8 . ? 3_545 ? 4 AC1 5 H5M A 9 ? H5M A 9 . ? 3_545 ? 5 AC1 5 BNZ K . ? BNZ B 102 . ? 1_555 ? 6 AC2 6 MAA A 5 ? MAA A 5 . ? 1_555 ? 7 AC2 6 BNZ H . ? BNZ A 118 . ? 1_555 ? 8 AC2 6 BNZ I . ? BNZ A 119 . ? 1_555 ? 9 AC2 6 CTH B 1 ? CTH B 1 . ? 1_555 ? 10 AC2 6 PXZ B 6 ? PXZ B 6 . ? 1_555 ? 11 AC2 6 BNZ V . ? BNZ B 117 . ? 1_455 ? 12 AC3 4 CTH A 1 ? CTH A 1 . ? 1_555 ? 13 AC3 4 BNZ G . ? BNZ A 116 . ? 3_655 ? 14 AC3 4 BNZ H . ? BNZ A 118 . ? 1_655 ? 15 AC3 4 BNZ Q . ? BNZ B 108 . ? 4_565 ? 16 AC4 1 BNZ V . ? BNZ B 117 . ? 3_645 ? 17 AC5 7 SAR A 4 ? SAR A 4 . ? 3_545 ? 18 AC5 7 BNZ E . ? BNZ A 110 . ? 3_645 ? 19 AC5 7 BNZ H . ? BNZ A 118 . ? 3_545 ? 20 AC5 7 BNZ I . ? BNZ A 119 . ? 3_545 ? 21 AC5 7 CTH B 1 ? CTH B 1 . ? 3_645 ? 22 AC5 7 MAA B 5 ? MAA B 5 . ? 3_645 ? 23 AC5 7 BNZ V . ? BNZ B 117 . ? 3_745 ? 24 AC6 7 DVA A 2 ? DVA A 2 . ? 1_555 ? 25 AC6 7 MAA A 5 ? MAA A 5 . ? 1_555 ? 26 AC6 7 BNZ D . ? BNZ A 109 . ? 1_555 ? 27 AC6 7 BNZ E . ? BNZ A 110 . ? 1_455 ? 28 AC6 7 BNZ G . ? BNZ A 116 . ? 3_555 ? 29 AC6 7 BNZ I . ? BNZ A 119 . ? 1_555 ? 30 AC6 7 BNZ V . ? BNZ B 117 . ? 1_455 ? 31 AC7 9 BNZ D . ? BNZ A 109 . ? 1_555 ? 32 AC7 9 BNZ G . ? BNZ A 116 . ? 3_555 ? 33 AC7 9 BNZ H . ? BNZ A 118 . ? 1_555 ? 34 AC7 9 MAA B 5 ? MAA B 5 . ? 1_455 ? 35 AC7 9 PXZ B 6 ? PXZ B 6 . ? 1_555 ? 36 AC7 9 H5M B 9 ? H5M B 9 . ? 1_455 ? 37 AC7 9 SAR B 10 ? SAR B 10 . ? 4_465 ? 38 AC7 9 MVA B 11 ? MVA B 11 . ? 4_465 ? 39 AC7 9 BNZ S . ? BNZ B 112 . ? 1_455 ? 40 AC8 1 SAR B 4 ? SAR B 4 . ? 3_655 ? 41 AC9 4 MAA A 5 ? MAA A 5 . ? 1_555 ? 42 AC9 4 DVA A 8 ? DVA A 8 . ? 3_545 ? 43 AC9 4 H5M A 9 ? H5M A 9 . ? 3_545 ? 44 AC9 4 BNZ C . ? BNZ A 101 . ? 1_555 ? 45 BC1 5 POM A 3 ? POM A 3 . ? 3_545 ? 46 BC1 5 PXZ A 6 ? PXZ A 6 . ? 3_645 ? 47 BC1 5 THR A 7 ? THR A 7 . ? 3_645 ? 48 BC1 5 H5M A 9 ? H5M A 9 . ? 3_645 ? 49 BC1 5 BNZ T . ? BNZ B 113 . ? 1_555 ? 50 BC2 4 PXZ B 6 ? PXZ B 6 . ? 4_565 ? 51 BC2 4 THR B 7 ? THR B 7 . ? 4_565 ? 52 BC2 4 H5M B 9 ? H5M B 9 . ? 4_565 ? 53 BC2 4 MVA B 11 ? MVA B 11 . ? 4_565 ? 54 BC3 4 MVA A 11 ? MVA A 11 . ? 3_545 ? 55 BC3 4 POM B 3 ? POM B 3 . ? 4_455 ? 56 BC3 4 POM B 3 ? POM B 3 . ? 1_555 ? 57 BC3 4 MVA B 11 ? MVA B 11 . ? 4_455 ? 58 BC4 4 SAR A 10 ? SAR A 10 . ? 3_645 ? 59 BC4 4 CTH B 1 ? CTH B 1 . ? 1_655 ? 60 BC4 4 MAA B 5 ? MAA B 5 . ? 1_655 ? 61 BC4 4 PXZ B 6 ? PXZ B 6 . ? 1_655 ? 62 BC5 1 POM B 3 ? POM B 3 . ? 1_555 ? 63 BC6 3 POM A 3 ? POM A 3 . ? 2_464 ? 64 BC6 3 THR A 7 ? THR A 7 . ? 2_464 ? 65 BC6 3 BNZ E . ? BNZ A 110 . ? 4_465 ? 66 BC7 1 POM B 3 ? POM B 3 . ? 1_555 ? 67 BC8 3 BNZ I . ? BNZ A 119 . ? 1_655 ? 68 BC8 3 H5M B 9 ? H5M B 9 . ? 4_465 ? 69 BC8 3 BNZ V . ? BNZ B 117 . ? 1_455 ? 70 BC9 3 MVA A 11 ? MVA A 11 . ? 3_545 ? 71 BC9 3 SAR B 4 ? SAR B 4 . ? 1_555 ? 72 BC9 3 BNZ L . ? BNZ B 103 . ? 1_555 ? 73 CC1 2 SAR A 4 ? SAR A 4 . ? 1_655 ? 74 CC1 2 PXZ A 6 ? PXZ A 6 . ? 1_555 ? 75 CC2 8 MAA A 5 ? MAA A 5 . ? 1_655 ? 76 CC2 8 PXZ A 6 ? PXZ A 6 . ? 3_655 ? 77 CC2 8 BNZ D . ? BNZ A 109 . ? 1_655 ? 78 CC2 8 BNZ F . ? BNZ A 115 . ? 3_655 ? 79 CC2 8 BNZ G . ? BNZ A 116 . ? 3_755 ? 80 CC2 8 BNZ H . ? BNZ A 118 . ? 1_655 ? 81 CC2 8 CTH B 1 ? CTH B 1 . ? 1_655 ? 82 CC2 8 BNZ S . ? BNZ B 112 . ? 1_655 ? 83 CC3 20 BNZ C . ? BNZ A 101 . ? 1_555 ? 84 CC3 20 BNZ C . ? BNZ A 101 . ? 3_555 ? 85 CC3 20 BNZ D . ? BNZ A 109 . ? 1_555 ? 86 CC3 20 BNZ E . ? BNZ A 110 . ? 1_555 ? 87 CC3 20 BNZ G . ? BNZ A 116 . ? 3_555 ? 88 CC3 20 BNZ H . ? BNZ A 118 . ? 1_555 ? 89 CC3 20 HOH W . ? HOH A 2001 . ? 1_555 ? 90 CC3 20 SAR B 4 ? SAR B 4 . ? 3_555 ? 91 CC3 20 BNZ K . ? BNZ B 102 . ? 1_555 ? 92 CC3 20 BNZ K . ? BNZ B 102 . ? 3_555 ? 93 CC3 20 BNZ L . ? BNZ B 103 . ? 3_555 ? 94 CC3 20 BNZ L . ? BNZ B 103 . ? 3_655 ? 95 CC3 20 BNZ N . ? BNZ B 105 . ? 3_555 ? 96 CC3 20 BNZ O . ? BNZ B 106 . ? 3_655 ? 97 CC3 20 BNZ Q . ? BNZ B 108 . ? 2_465 ? 98 CC3 20 BNZ T . ? BNZ B 113 . ? 3_555 ? 99 CC3 20 BNZ U . ? BNZ B 114 . ? 1_555 ? 100 CC3 20 BNZ U . ? BNZ B 114 . ? 1_455 ? 101 CC3 20 BNZ V . ? BNZ B 117 . ? 3_645 ? 102 CC3 20 BNZ V . ? BNZ B 117 . ? 1_455 ? 103 CC4 16 MVA A 11 ? MVA A 11 . ? 3_545 ? 104 CC4 16 BNZ D . ? BNZ A 109 . ? 1_555 ? 105 CC4 16 BNZ G . ? BNZ A 116 . ? 3_655 ? 106 CC4 16 BNZ I . ? BNZ A 119 . ? 4_565 ? 107 CC4 16 BNZ I . ? BNZ A 119 . ? 1_555 ? 108 CC4 16 BNZ I . ? BNZ A 119 . ? 1_655 ? 109 CC4 16 BNZ J . ? BNZ A 120 . ? 3_645 ? 110 CC4 16 BNZ M . ? BNZ B 104 . ? 4_465 ? 111 CC4 16 BNZ N . ? BNZ B 105 . ? 4_555 ? 112 CC4 16 BNZ N . ? BNZ B 105 . ? 1_555 ? 113 CC4 16 BNZ O . ? BNZ B 106 . ? 1_455 ? 114 CC4 16 BNZ P . ? BNZ B 107 . ? 1_555 ? 115 CC4 16 BNZ R . ? BNZ B 111 . ? 1_555 ? 116 CC4 16 BNZ S . ? BNZ B 112 . ? 4_565 ? 117 CC4 16 BNZ T . ? BNZ B 113 . ? 1_555 ? 118 CC4 16 BNZ V . ? BNZ B 117 . ? 1_455 ? # _pdbx_molecule_features.prd_id PRD_000009 _pdbx_molecule_features.name 'Actinomycin Z3' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ACTINOMYCIN Z3 CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000009 A 2 PRD_000009 B # _pdbx_entry_details.entry_id 1A7Z _pdbx_entry_details.compound_details ;ACTINOMYCIN Z3 IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BNZ C1 C Y N 1 BNZ C2 C Y N 2 BNZ C3 C Y N 3 BNZ C4 C Y N 4 BNZ C5 C Y N 5 BNZ C6 C Y N 6 BNZ H1 H N N 7 BNZ H2 H N N 8 BNZ H3 H N N 9 BNZ H4 H N N 10 BNZ H5 H N N 11 BNZ H6 H N N 12 CTH N N N N 13 CTH CA C N S 14 CTH C C N N 15 CTH O O N N 16 CTH OXT O N N 17 CTH CB C N S 18 CTH CG2 C N N 19 CTH CL2 CL N N 20 CTH OG1 O N N 21 CTH H H N N 22 CTH H2 H N N 23 CTH HA H N N 24 CTH HXT H N N 25 CTH HB H N N 26 CTH HG22 H N N 27 CTH HG23 H N N 28 CTH HG1 H N N 29 DVA N N N N 30 DVA CA C N R 31 DVA CB C N N 32 DVA CG1 C N N 33 DVA CG2 C N N 34 DVA C C N N 35 DVA O O N N 36 DVA OXT O N N 37 DVA H H N N 38 DVA H2 H N N 39 DVA HA H N N 40 DVA HB H N N 41 DVA HG11 H N N 42 DVA HG12 H N N 43 DVA HG13 H N N 44 DVA HG21 H N N 45 DVA HG22 H N N 46 DVA HG23 H N N 47 DVA HXT H N N 48 H5M N N N N 49 H5M CA C N S 50 H5M C C N N 51 H5M O O N N 52 H5M OXT O N N 53 H5M CB C N S 54 H5M CG C N N 55 H5M CD C N S 56 H5M OB O N N 57 H5M CD1 C N N 58 H5M H H N N 59 H5M HA H N N 60 H5M HXT H N N 61 H5M HB H N N 62 H5M HG2 H N N 63 H5M HG3 H N N 64 H5M HD H N N 65 H5M HOB H N N 66 H5M HD11 H N N 67 H5M HD12 H N N 68 H5M HD13 H N N 69 HOH O O N N 70 HOH H1 H N N 71 HOH H2 H N N 72 MAA N N N N 73 MAA CM C N N 74 MAA CA C N S 75 MAA CB C N N 76 MAA C C N N 77 MAA O O N N 78 MAA OXT O N N 79 MAA H H N N 80 MAA HM1 H N N 81 MAA HM2 H N N 82 MAA HM3 H N N 83 MAA HA H N N 84 MAA HB1 H N N 85 MAA HB2 H N N 86 MAA HB3 H N N 87 MAA HXT H N N 88 MVA N N N N 89 MVA CN C N N 90 MVA CA C N S 91 MVA CB C N N 92 MVA CG1 C N N 93 MVA CG2 C N N 94 MVA C C N N 95 MVA O O N N 96 MVA OXT O N N 97 MVA H H N N 98 MVA HN1 H N N 99 MVA HN2 H N N 100 MVA HN3 H N N 101 MVA HA H N N 102 MVA HB H N N 103 MVA HG11 H N N 104 MVA HG12 H N N 105 MVA HG13 H N N 106 MVA HG21 H N N 107 MVA HG22 H N N 108 MVA HG23 H N N 109 MVA HXT H N N 110 POM N N N N 111 POM CA C N S 112 POM C C N N 113 POM O O N N 114 POM OXT O N N 115 POM CB C N N 116 POM CG C N N 117 POM CD C N S 118 POM OG O N N 119 POM CD1 C N N 120 POM H H N N 121 POM HA H N N 122 POM HXT H N N 123 POM HB2 H N N 124 POM HB3 H N N 125 POM HD H N N 126 POM HD11 H N N 127 POM HD12 H N N 128 POM HD13 H N N 129 PXZ C1 C N N 130 PXZ C0 C N N 131 PXZ O1 O N N 132 PXZ C2 C N N 133 PXZ N2 N N N 134 PXZ C3 C N N 135 PXZ O3 O N N 136 PXZ C4 C N N 137 PXZ O5 O N N 138 PXZ C6 C Y N 139 PXZ C7 C Y N 140 PXZ C8 C Y N 141 PXZ C9 C Y N 142 PXZ "C0'" C N N 143 PXZ "O1'" O N N 144 PXZ N10 N N N 145 PXZ C11 C N N 146 PXZ C12 C N N 147 PXZ C13 C Y N 148 PXZ C14 C Y N 149 PXZ C15 C N N 150 PXZ C16 C N N 151 PXZ HN21 H N N 152 PXZ HN22 H N N 153 PXZ H7 H N N 154 PXZ H8 H N N 155 PXZ H151 H N N 156 PXZ H152 H N N 157 PXZ H153 H N N 158 PXZ H161 H N N 159 PXZ H162 H N N 160 PXZ H163 H N N 161 PXZ "OXT'" O N N 162 PXZ OXT O N N 163 PXZ "HXT'" H N N 164 PXZ HXT H N N 165 SAR N N N N 166 SAR CA C N N 167 SAR C C N N 168 SAR O O N N 169 SAR CN C N N 170 SAR OXT O N N 171 SAR H H N N 172 SAR HA2 H N N 173 SAR HA3 H N N 174 SAR HN1 H N N 175 SAR HN2 H N N 176 SAR HN3 H N N 177 SAR HXT H N N 178 THR N N N N 179 THR CA C N S 180 THR C C N N 181 THR O O N N 182 THR CB C N R 183 THR OG1 O N N 184 THR CG2 C N N 185 THR OXT O N N 186 THR H H N N 187 THR H2 H N N 188 THR HA H N N 189 THR HB H N N 190 THR HG1 H N N 191 THR HG21 H N N 192 THR HG22 H N N 193 THR HG23 H N N 194 THR HXT H N N 195 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BNZ C1 C2 doub Y N 1 BNZ C1 C6 sing Y N 2 BNZ C1 H1 sing N N 3 BNZ C2 C3 sing Y N 4 BNZ C2 H2 sing N N 5 BNZ C3 C4 doub Y N 6 BNZ C3 H3 sing N N 7 BNZ C4 C5 sing Y N 8 BNZ C4 H4 sing N N 9 BNZ C5 C6 doub Y N 10 BNZ C5 H5 sing N N 11 BNZ C6 H6 sing N N 12 CTH N CA sing N N 13 CTH N H sing N N 14 CTH N H2 sing N N 15 CTH CA C sing N N 16 CTH CA CB sing N N 17 CTH CA HA sing N N 18 CTH C O doub N N 19 CTH C OXT sing N N 20 CTH OXT HXT sing N N 21 CTH CB CG2 sing N N 22 CTH CB OG1 sing N N 23 CTH CB HB sing N N 24 CTH CG2 CL2 sing N N 25 CTH CG2 HG22 sing N N 26 CTH CG2 HG23 sing N N 27 CTH OG1 HG1 sing N N 28 DVA N CA sing N N 29 DVA N H sing N N 30 DVA N H2 sing N N 31 DVA CA CB sing N N 32 DVA CA C sing N N 33 DVA CA HA sing N N 34 DVA CB CG1 sing N N 35 DVA CB CG2 sing N N 36 DVA CB HB sing N N 37 DVA CG1 HG11 sing N N 38 DVA CG1 HG12 sing N N 39 DVA CG1 HG13 sing N N 40 DVA CG2 HG21 sing N N 41 DVA CG2 HG22 sing N N 42 DVA CG2 HG23 sing N N 43 DVA C O doub N N 44 DVA C OXT sing N N 45 DVA OXT HXT sing N N 46 H5M N CA sing N N 47 H5M N CD sing N N 48 H5M N H sing N N 49 H5M CA C sing N N 50 H5M CA CB sing N N 51 H5M CA HA sing N N 52 H5M C O doub N N 53 H5M C OXT sing N N 54 H5M OXT HXT sing N N 55 H5M CB CG sing N N 56 H5M CB OB sing N N 57 H5M CB HB sing N N 58 H5M CG CD sing N N 59 H5M CG HG2 sing N N 60 H5M CG HG3 sing N N 61 H5M CD CD1 sing N N 62 H5M CD HD sing N N 63 H5M OB HOB sing N N 64 H5M CD1 HD11 sing N N 65 H5M CD1 HD12 sing N N 66 H5M CD1 HD13 sing N N 67 HOH O H1 sing N N 68 HOH O H2 sing N N 69 MAA N CM sing N N 70 MAA N CA sing N N 71 MAA N H sing N N 72 MAA CM HM1 sing N N 73 MAA CM HM2 sing N N 74 MAA CM HM3 sing N N 75 MAA CA CB sing N N 76 MAA CA C sing N N 77 MAA CA HA sing N N 78 MAA CB HB1 sing N N 79 MAA CB HB2 sing N N 80 MAA CB HB3 sing N N 81 MAA C O doub N N 82 MAA C OXT sing N N 83 MAA OXT HXT sing N N 84 MVA N CN sing N N 85 MVA N CA sing N N 86 MVA N H sing N N 87 MVA CN HN1 sing N N 88 MVA CN HN2 sing N N 89 MVA CN HN3 sing N N 90 MVA CA CB sing N N 91 MVA CA C sing N N 92 MVA CA HA sing N N 93 MVA CB CG1 sing N N 94 MVA CB CG2 sing N N 95 MVA CB HB sing N N 96 MVA CG1 HG11 sing N N 97 MVA CG1 HG12 sing N N 98 MVA CG1 HG13 sing N N 99 MVA CG2 HG21 sing N N 100 MVA CG2 HG22 sing N N 101 MVA CG2 HG23 sing N N 102 MVA C O doub N N 103 MVA C OXT sing N N 104 MVA OXT HXT sing N N 105 POM N CA sing N N 106 POM N CD sing N N 107 POM N H sing N N 108 POM CA C sing N N 109 POM CA CB sing N N 110 POM CA HA sing N N 111 POM C O doub N N 112 POM C OXT sing N N 113 POM OXT HXT sing N N 114 POM CB CG sing N N 115 POM CB HB2 sing N N 116 POM CB HB3 sing N N 117 POM CG CD sing N N 118 POM CG OG doub N N 119 POM CD CD1 sing N N 120 POM CD HD sing N N 121 POM CD1 HD11 sing N N 122 POM CD1 HD12 sing N N 123 POM CD1 HD13 sing N N 124 PXZ C1 C0 sing N N 125 PXZ C1 C2 doub N N 126 PXZ C1 C11 sing N N 127 PXZ C0 O1 doub N N 128 PXZ C2 N2 sing N N 129 PXZ C2 C3 sing N N 130 PXZ N2 HN21 sing N N 131 PXZ N2 HN22 sing N N 132 PXZ C3 O3 doub N N 133 PXZ C3 C4 sing N N 134 PXZ C4 C12 doub N N 135 PXZ C4 C15 sing N N 136 PXZ O5 C12 sing N N 137 PXZ O5 C13 sing N N 138 PXZ C6 C7 doub Y N 139 PXZ C6 C13 sing Y N 140 PXZ C6 C16 sing N N 141 PXZ C7 C8 sing Y N 142 PXZ C7 H7 sing N N 143 PXZ C8 C9 doub Y N 144 PXZ C8 H8 sing N N 145 PXZ C9 "C0'" sing N N 146 PXZ C9 C14 sing Y N 147 PXZ "C0'" "O1'" doub N N 148 PXZ N10 C11 doub N N 149 PXZ N10 C14 sing N N 150 PXZ C11 C12 sing N N 151 PXZ C13 C14 doub Y N 152 PXZ C15 H151 sing N N 153 PXZ C15 H152 sing N N 154 PXZ C15 H153 sing N N 155 PXZ C16 H161 sing N N 156 PXZ C16 H162 sing N N 157 PXZ C16 H163 sing N N 158 PXZ "C0'" "OXT'" sing N N 159 PXZ C0 OXT sing N N 160 PXZ "OXT'" "HXT'" sing N N 161 PXZ OXT HXT sing N N 162 SAR N CA sing N N 163 SAR N CN sing N N 164 SAR N H sing N N 165 SAR CA C sing N N 166 SAR CA HA2 sing N N 167 SAR CA HA3 sing N N 168 SAR C O doub N N 169 SAR C OXT sing N N 170 SAR CN HN1 sing N N 171 SAR CN HN2 sing N N 172 SAR CN HN3 sing N N 173 SAR OXT HXT sing N N 174 THR N CA sing N N 175 THR N H sing N N 176 THR N H2 sing N N 177 THR CA C sing N N 178 THR CA CB sing N N 179 THR CA HA sing N N 180 THR C O doub N N 181 THR C OXT sing N N 182 THR CB OG1 sing N N 183 THR CB CG2 sing N N 184 THR CB HB sing N N 185 THR OG1 HG1 sing N N 186 THR CG2 HG21 sing N N 187 THR CG2 HG22 sing N N 188 THR CG2 HG23 sing N N 189 THR OXT HXT sing N N 190 # _atom_sites.entry_id 1A7Z _atom_sites.fract_transf_matrix[1][1] 0.067554 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.040355 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015371 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O # loop_