HEADER PHOSPHOLIPID ANALOG 23-MAR-98 1A8A TITLE RAT ANNEXIN V COMPLEXED WITH GLYCEROPHOSPHOSERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANNEXIN V; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PLACENTAL ANTICOAGULANT PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 ORGAN: KIDNEY KEYWDS PHOSPHOLIPID ANALOG, CALCIUM BINDING PROTEIN, MEMBRANE BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SWAIRJO,N.O.CONCHA,M.A.KAETZEL,J.R.DEDMAN,B.A.SEATON REVDAT 3 15-NOV-23 1A8A 1 REMARK LINK ATOM REVDAT 2 24-FEB-09 1A8A 1 VERSN REVDAT 1 17-JUN-98 1A8A 0 JRNL AUTH M.A.SWAIRJO,N.O.CONCHA,M.A.KAETZEL,J.R.DEDMAN,B.A.SEATON JRNL TITL CA(2+)-BRIDGING MECHANISM AND PHOSPHOLIPID HEAD GROUP JRNL TITL 2 RECOGNITION IN THE MEMBRANE-BINDING PROTEIN ANNEXIN V. JRNL REF NAT.STRUCT.BIOL. V. 2 968 1995 JRNL REFN ISSN 1072-8368 JRNL PMID 7583670 JRNL DOI 10.1038/NSB1195-968 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 74.0 REMARK 3 NUMBER OF REFLECTIONS : 20069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 3.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.500 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1A8A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : AUG-94 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20264 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 74.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : 0.04300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CRYSTALLIZED FROM AMMONIUM REMARK 280 SULFATE, 20MM CACL2, 50MM HEPES, PH 8.2; SOAKED IN 20% PEG, 20MM REMARK 280 CACL2, 80MM GSE, PH 7.1 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 78.63500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.39994 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.48333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 78.63500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 45.39994 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.48333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 78.63500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 45.39994 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.48333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 90.79988 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 24.96667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 90.79988 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.96667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 90.79988 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 24.96667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ACE A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 57 O HOH A 673 1.39 REMARK 500 O THR A 8 O HOH A 670 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 668 O HOH A 669 2665 0.03 REMARK 500 CG2 VAL A 153 O HOH A 673 2665 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 203 NE2 HIS A 203 CD2 -0.069 REMARK 500 HIS A 265 NE2 HIS A 265 CD2 -0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 LEU A 37 CA - CB - CG ANGL. DEV. = 19.7 DEGREES REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 48 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 GLU A 76 OE1 - CD - OE2 ANGL. DEV. = -10.1 DEGREES REMARK 500 ARG A 87 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TYR A 92 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 121 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 TYR A 131 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 142 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 TYR A 146 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 172 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 TRP A 185 CD1 - CG - CD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 TRP A 185 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 206 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR A 211 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 GLU A 232 OE1 - CD - OE2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ARG A 243 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 243 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 269 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 274 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 274 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 LEU A 312 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 101 -74.53 -64.86 REMARK 500 SER A 244 114.64 -162.62 REMARK 500 ILE A 277 -68.25 -120.82 REMARK 500 ASP A 278 25.02 -147.35 REMARK 500 ALA A 291 -0.38 58.33 REMARK 500 ASP A 318 -52.75 133.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 26 O REMARK 620 2 GLY A 28 O 93.7 REMARK 620 3 GLY A 30 O 91.5 86.5 REMARK 620 4 GLU A 70 OE1 85.5 163.7 77.2 REMARK 620 5 GLU A 70 OE2 92.0 146.6 126.2 49.6 REMARK 620 6 HOH A 635 O 166.2 95.5 78.8 82.8 86.0 REMARK 620 7 HOH A 636 O 84.3 68.4 154.2 127.5 79.5 108.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 31 O REMARK 620 2 GLU A 33 OE1 77.4 REMARK 620 3 GLU A 33 OE2 86.6 47.5 REMARK 620 4 HOH A 630 O 95.1 64.9 110.2 REMARK 620 5 HOH A 637 O 97.2 111.3 63.9 165.9 REMARK 620 6 HOH A 638 O 169.8 92.6 85.1 82.3 84.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 68 O REMARK 620 2 LEU A 71 O 89.3 REMARK 620 3 GLU A 76 OE1 116.2 77.6 REMARK 620 4 GLU A 76 OE2 74.8 100.1 47.9 REMARK 620 5 HOH A 591 O 173.2 97.0 68.0 106.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 98 O REMARK 620 2 GLY A 100 O 91.2 REMARK 620 3 ALA A 101 O 146.6 61.7 REMARK 620 4 GLY A 102 O 102.6 96.0 64.5 REMARK 620 5 ASP A 142 OD1 94.7 146.5 118.7 114.7 REMARK 620 6 ASP A 142 OD2 74.7 161.9 126.3 76.5 48.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 406 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 103 O REMARK 620 2 GLU A 105 OE2 82.5 REMARK 620 3 GLU A 105 OE1 83.7 49.9 REMARK 620 4 HOH A 639 O 74.6 137.0 91.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 140 O REMARK 620 2 GLY A 141 O 69.0 REMARK 620 3 THR A 143 O 87.5 112.1 REMARK 620 4 HOH A 607 O 123.2 70.9 72.3 REMARK 620 5 HOH A 640 O 77.8 128.0 104.9 158.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 407 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 181 O REMARK 620 2 LYS A 184 O 86.5 REMARK 620 3 GLY A 186 O 99.9 72.4 REMARK 620 4 GLU A 226 OE1 82.3 150.3 82.5 REMARK 620 5 GLU A 226 OE2 80.0 153.7 132.0 49.7 REMARK 620 6 HOH A 512 O 84.4 75.2 146.9 130.5 81.1 REMARK 620 7 GSE A 997 O14 174.1 99.3 82.8 92.9 94.3 96.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 409 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 187 O REMARK 620 2 GLU A 189 OE2 87.5 REMARK 620 3 GLU A 189 OE1 74.7 46.8 REMARK 620 4 HOH A 626 O 85.9 117.9 72.1 REMARK 620 5 HOH A 642 O 161.7 106.3 105.7 77.0 REMARK 620 6 HOH A 644 O 90.2 143.8 162.1 97.9 85.7 REMARK 620 7 GSE A 997 OXT 82.0 74.9 116.9 162.0 112.9 69.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 408 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 224 OD1 REMARK 620 2 ASP A 224 O 68.7 REMARK 620 3 THR A 227 O 138.6 80.2 REMARK 620 4 GLU A 232 OE2 56.4 93.3 100.7 REMARK 620 5 GLU A 232 OE1 93.4 133.5 88.5 44.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 410 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 257 O REMARK 620 2 GLY A 259 O 68.3 REMARK 620 3 ALA A 260 O 123.0 65.6 REMARK 620 4 GLY A 261 O 81.5 87.5 65.1 REMARK 620 5 ASP A 301 OD2 87.7 153.1 123.8 76.6 REMARK 620 6 ASP A 301 OD1 98.7 144.0 138.2 124.9 48.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: GSE REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: GSE BINDING SITE (INCLUDES 2 CALCIUM IONS). REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSE A 997 REMARK 999 REMARK 999 SEQUENCE REMARK 999 IN THE NATIVE PROTEIN THE N-TERMINAL ALANINE IS ACETYLATED, REMARK 999 BUT NO DENSITY IS SEEN FOR THE ACETYLATION, AND THEREFORE REMARK 999 HAS BEEN MODELLED AS ALANINE. WHILE IT IS POSSIBLE THAT REMARK 999 THE ACETYLATION IS NOT PRESENT IN THE ACTUAL BIOLOGICAL REMARK 999 MATERIAL USED, IT IS CERTAINLY REASONABLE TO ASSUME REMARK 999 THAT IT IS NOT SEEN IN THE ELECTRON DENSITY MAP. DBREF 1A8A A 2 319 UNP P14668 ANXA5_RAT 1 318 SEQRES 1 A 319 ACE ALA LEU ARG GLY THR VAL THR ASP PHE SER GLY PHE SEQRES 2 A 319 ASP GLY ARG ALA ASP ALA GLU VAL LEU ARG LYS ALA MET SEQRES 3 A 319 LYS GLY LEU GLY THR ASP GLU ASP SER ILE LEU ASN LEU SEQRES 4 A 319 LEU THR ALA ARG SER ASN ALA GLN ARG GLN GLN ILE ALA SEQRES 5 A 319 GLU GLU PHE LYS THR LEU PHE GLY ARG ASP LEU VAL ASN SEQRES 6 A 319 ASP MET LYS SER GLU LEU THR GLY LYS PHE GLU LYS LEU SEQRES 7 A 319 ILE VAL ALA LEU MET LYS PRO SER ARG LEU TYR ASP ALA SEQRES 8 A 319 TYR GLU LEU LYS HIS ALA LEU LYS GLY ALA GLY THR ASP SEQRES 9 A 319 GLU LYS VAL LEU THR GLU ILE ILE ALA SER ARG THR PRO SEQRES 10 A 319 GLU GLU LEU ARG ALA ILE LYS GLN ALA TYR GLU GLU GLU SEQRES 11 A 319 TYR GLY SER ASN LEU GLU ASP ASP VAL VAL GLY ASP THR SEQRES 12 A 319 SER GLY TYR TYR GLN ARG MET LEU VAL VAL LEU LEU GLN SEQRES 13 A 319 ALA ASN ARG ASP PRO ASP THR ALA ILE ASP ASP ALA GLN SEQRES 14 A 319 VAL GLU LEU ASP ALA GLN ALA LEU PHE GLN ALA GLY GLU SEQRES 15 A 319 LEU LYS TRP GLY THR ASP GLU GLU LYS PHE ILE THR ILE SEQRES 16 A 319 LEU GLY THR ARG SER VAL SER HIS LEU ARG ARG VAL PHE SEQRES 17 A 319 ASP LYS TYR MET THR ILE SER GLY PHE GLN ILE GLU GLU SEQRES 18 A 319 THR ILE ASP ARG GLU THR SER GLY ASN LEU GLU ASN LEU SEQRES 19 A 319 LEU LEU ALA VAL VAL LYS SER ILE ARG SER ILE PRO ALA SEQRES 20 A 319 TYR LEU ALA GLU THR LEU TYR TYR ALA MET LYS GLY ALA SEQRES 21 A 319 GLY THR ASP ASP HIS THR LEU ILE ARG VAL ILE VAL SER SEQRES 22 A 319 ARG SER GLU ILE ASP LEU PHE ASN ILE ARG LYS GLU PHE SEQRES 23 A 319 ARG LYS ASN PHE ALA THR SER LEU TYR SER MET ILE LYS SEQRES 24 A 319 GLY ASP THR SER GLY ASP TYR LYS LYS ALA LEU LEU LEU SEQRES 25 A 319 LEU CYS GLY GLY GLU ASP ASP HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HET CA A 406 1 HET CA A 407 1 HET CA A 408 1 HET CA A 409 1 HET CA A 410 1 HET GSE A 997 16 HETNAM CA CALCIUM ION HETNAM GSE L-ALPHA-GLYCEROPHOSPHORYLSERINE FORMUL 2 CA 10(CA 2+) FORMUL 12 GSE C6 H14 N O8 P FORMUL 13 HOH *116(H2 O) HELIX 1 1 GLY A 15 LYS A 24 1 10 HELIX 2 2 GLU A 33 ALA A 42 1 10 HELIX 3 3 ASN A 45 PHE A 59 1 15 HELIX 4 4 LEU A 63 GLU A 70 1 8 HELIX 5 5 GLY A 73 MET A 83 1 11 HELIX 6 6 SER A 86 LEU A 98 1 13 HELIX 7 7 GLU A 105 SER A 114 1 10 HELIX 8 8 PRO A 117 TYR A 131 1 15 HELIX 9 9 LEU A 135 ASP A 142 1 8 HELIX 10 10 GLY A 145 LEU A 155 1 11 HELIX 11 11 ASP A 167 ALA A 180 1 14 HELIX 12 12 GLU A 189 THR A 198 1 10 HELIX 13 13 VAL A 201 SER A 215 1 15 HELIX 14 14 ILE A 219 GLU A 226 1 8 HELIX 15 15 GLY A 229 ARG A 243 1 15 HELIX 16 16 ILE A 245 LYS A 258 1 14 HELIX 17 17 ASP A 264 ARG A 274 1 11 HELIX 18 18 LEU A 279 PHE A 290 1 12 HELIX 19 19 LEU A 294 ASP A 301 1 8 HELIX 20 20 GLY A 304 CYS A 314 1 11 LINK O MET A 26 CA CA A 401 1555 1555 2.34 LINK O GLY A 28 CA CA A 401 1555 1555 2.42 LINK O GLY A 30 CA CA A 401 1555 1555 2.41 LINK O THR A 31 CA CA A 403 1555 1555 2.48 LINK OE1 GLU A 33 CA CA A 403 1555 1555 2.51 LINK OE2 GLU A 33 CA CA A 403 1555 1555 2.73 LINK O LYS A 68 CA CA A 402 1555 1555 2.40 LINK OE1 GLU A 70 CA CA A 401 1555 1555 2.47 LINK OE2 GLU A 70 CA CA A 401 1555 1555 2.57 LINK O LEU A 71 CA CA A 402 1555 1555 2.40 LINK OE1 GLU A 76 CA CA A 402 1555 1555 2.51 LINK OE2 GLU A 76 CA CA A 402 1555 1555 2.54 LINK O LEU A 98 CA CA A 404 1555 1555 2.46 LINK O GLY A 100 CA CA A 404 1555 1555 2.78 LINK O ALA A 101 CA CA A 404 1555 1555 2.48 LINK O GLY A 102 CA CA A 404 1555 1555 2.35 LINK O THR A 103 CA CA A 406 1555 1555 2.45 LINK OE2 GLU A 105 CA CA A 406 1555 1555 2.52 LINK OE1 GLU A 105 CA CA A 406 1555 1555 2.45 LINK O VAL A 140 CA CA A 405 1555 1555 2.46 LINK O GLY A 141 CA CA A 405 1555 1555 3.29 LINK OD1 ASP A 142 CA CA A 404 1555 1555 2.60 LINK OD2 ASP A 142 CA CA A 404 1555 1555 2.48 LINK O THR A 143 CA CA A 405 1555 1555 2.43 LINK O GLY A 181 CA CA A 407 1555 1555 2.34 LINK O LYS A 184 CA CA A 407 1555 1555 2.44 LINK O GLY A 186 CA CA A 407 1555 1555 2.43 LINK O THR A 187 CA CA A 409 1555 1555 2.41 LINK OE2 GLU A 189 CA CA A 409 1555 1555 2.65 LINK OE1 GLU A 189 CA CA A 409 1555 1555 2.62 LINK OD1 ASP A 224 CA CA A 408 1555 1555 3.01 LINK O ASP A 224 CA CA A 408 1555 1555 2.54 LINK OE1 GLU A 226 CA CA A 407 1555 1555 2.51 LINK OE2 GLU A 226 CA CA A 407 1555 1555 2.48 LINK O THR A 227 CA CA A 408 1555 1555 2.43 LINK OE2 GLU A 232 CA CA A 408 1555 1555 2.53 LINK OE1 GLU A 232 CA CA A 408 1555 1555 2.83 LINK O MET A 257 CA CA A 410 1555 1555 2.44 LINK O GLY A 259 CA CA A 410 1555 1555 2.51 LINK O ALA A 260 CA CA A 410 1555 1555 2.47 LINK O GLY A 261 CA CA A 410 1555 1555 2.40 LINK OD2 ASP A 301 CA CA A 410 1555 1555 2.53 LINK OD1 ASP A 301 CA CA A 410 1555 1555 2.50 LINK CA CA A 401 O HOH A 635 1555 1555 2.60 LINK CA CA A 401 O HOH A 636 1555 1555 2.54 LINK CA CA A 402 O HOH A 591 1555 1555 2.50 LINK CA CA A 403 O HOH A 630 1555 1555 2.55 LINK CA CA A 403 O HOH A 637 1555 1555 2.49 LINK CA CA A 403 O HOH A 638 1555 1555 2.56 LINK CA CA A 405 O HOH A 607 1555 1555 2.58 LINK CA CA A 405 O HOH A 640 1555 1555 2.45 LINK CA CA A 406 O HOH A 639 1555 1555 2.52 LINK CA CA A 407 O HOH A 512 1555 1555 2.50 LINK CA CA A 407 O14 GSE A 997 1555 1555 2.36 LINK CA CA A 409 O HOH A 626 1555 1555 2.50 LINK CA CA A 409 O HOH A 642 1555 1555 2.47 LINK CA CA A 409 O HOH A 644 1555 1555 2.69 LINK CA CA A 409 OXT GSE A 997 1555 1555 2.56 SITE 1 GSE 6 TRP A 185 GLY A 186 THR A 187 GLU A 226 SITE 2 GSE 6 CA A 407 CA A 409 SITE 1 AC1 6 MET A 26 GLY A 28 GLY A 30 GLU A 70 SITE 2 AC1 6 HOH A 635 HOH A 636 SITE 1 AC2 4 LYS A 68 LEU A 71 GLU A 76 HOH A 591 SITE 1 AC3 5 THR A 31 GLU A 33 HOH A 630 HOH A 637 SITE 2 AC3 5 HOH A 638 SITE 1 AC4 6 LEU A 98 LYS A 99 GLY A 100 ALA A 101 SITE 2 AC4 6 GLY A 102 ASP A 142 SITE 1 AC5 6 VAL A 140 GLY A 141 THR A 143 GLN A 148 SITE 2 AC5 6 HOH A 607 HOH A 640 SITE 1 AC6 3 THR A 103 GLU A 105 HOH A 639 SITE 1 AC7 6 GLY A 181 LYS A 184 GLY A 186 GLU A 226 SITE 2 AC7 6 HOH A 512 GSE A 997 SITE 1 AC8 3 ASP A 224 THR A 227 GLU A 232 SITE 1 AC9 6 THR A 187 GLU A 189 HOH A 626 HOH A 642 SITE 2 AC9 6 HOH A 644 GSE A 997 SITE 1 BC1 5 MET A 257 GLY A 259 ALA A 260 GLY A 261 SITE 2 BC1 5 ASP A 301 SITE 1 BC2 12 ASP A 167 LYS A 184 TRP A 185 GLY A 186 SITE 2 BC2 12 THR A 187 GLU A 189 GLU A 226 CA A 407 SITE 3 BC2 12 CA A 409 HOH A 510 HOH A 628 HOH A 644 CRYST1 157.270 157.270 37.450 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006358 0.003671 0.000000 0.00000 SCALE2 0.000000 0.007342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026702 0.00000