HEADER GLYCOGEN PHOSPHORYLASE 25-MAR-98 1A8I TITLE SPIROHYDANTOIN INHIBITOR OF GLYCOGEN PHOSPHORYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGEN PHOSPHORYLASE B; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: MUSCLE KEYWDS GLYCOGEN PHOSPHORYLASE, GLUCOPYRANOSE SPIROHYDANTOIN, WATER KEYWDS 2 STRUCTURE, INHIBITOR BINDING, ANTI-HYPERGLYCEMIC AGENT EXPDTA X-RAY DIFFRACTION AUTHOR M.GREGORIOU,M.E.M.NOBLE,K.A.WATSON,E.F.GARMAN,T.M.KRULLE,C.DE LA AUTHOR 2 FUENTE,G.W.J.FLEET,N.G.OIKONOMAKOS,L.N.JOHNSON REVDAT 5 02-AUG-23 1A8I 1 REMARK REVDAT 4 29-JUL-20 1A8I 1 REMARK SEQADV LINK SITE REVDAT 3 24-FEB-09 1A8I 1 VERSN REVDAT 2 01-APR-03 1A8I 1 JRNL REVDAT 1 01-JUL-98 1A8I 0 JRNL AUTH M.GREGORIOU,M.E.NOBLE,K.A.WATSON,E.F.GARMAN,T.M.KRULLE, JRNL AUTH 2 C.DE LA FUENTE,G.W.FLEET,N.G.OIKONOMAKOS,L.N.JOHNSON JRNL TITL THE STRUCTURE OF A GLYCOGEN PHOSPHORYLASE GLUCOPYRANOSE JRNL TITL 2 SPIROHYDANTOIN COMPLEX AT 1.8 A RESOLUTION AND 100 K: THE JRNL TITL 3 ROLE OF THE WATER STRUCTURE AND ITS CONTRIBUTION TO BINDING. JRNL REF PROTEIN SCI. V. 7 915 1998 JRNL REFN ISSN 0961-8368 JRNL PMID 9568898 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.M.KRULLE,C.DE LA FUENTE,K.A.WATSON,M.GREGORIOU, REMARK 1 AUTH 2 L.N.JOHNSON,K.E.TSITSANOU,S.E.ZOGRAPHOS,N.G.OIKONOMAKOS, REMARK 1 AUTH 3 G.W.J.FLEET REMARK 1 TITL STEREOSPECIFIC SYNTHESIS OF SPIROHYDANTOINS OF REMARK 1 TITL 2 BETA-GLUCOPYRANOSE: INHIBITORS OF GLYCOGEN PHOSPHORYLASE REMARK 1 REF SYNLETT 211 1997 REMARK 1 REFN ISSN 0936-5214 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.J.F.BICHARD,E.P.MITCHELL,M.R.WORMALD,K.A.WATSON, REMARK 1 AUTH 2 L.N.JOHNSON,S.E.ZOGRAPHOS,D.D.KOUTRA,N.G.OIKONOMAKOS, REMARK 1 AUTH 3 G.W.J.FLEET REMARK 1 TITL POTENT INHIBITION OF GLYCOGEN PHOSPHORYLASE BY A REMARK 1 TITL 2 SPIROHYDANTOIN OF GLUCOPYRANOSE: FIRST PYRANOSE ANALOGUES OF REMARK 1 TITL 3 HYDANTOCIDIN REMARK 1 REF TETRAHEDRON LETT. V. 36 2145 1995 REMARK 1 REFN ISSN 0040-4039 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.A.WATSON,E.P.MITCHELL,L.N.JOHNSON,J.C.SON,C.J.BICHARD, REMARK 1 AUTH 2 M.G.ORCHARD,G.W.FLEET,N.G.OIKONOMAKOS,D.D.LEONIDAS,M.KONTOU, REMARK 1 AUTH 3 A.PAPAGEORGIOU REMARK 1 TITL DESIGN OF INHIBITORS OF GLYCOGEN PHOSPHORYLASE: A STUDY OF REMARK 1 TITL 2 ALPHA-AND BETA-C-GLUCOSIDES AND 1-THIO-BETA-D-GLUCOSE REMARK 1 TITL 3 COMPOUNDS REMARK 1 REF BIOCHEMISTRY V. 33 5745 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.L.MARTIN,K.VELURAJA,K.ROSS,L.N.JOHNSON,G.W.FLEET, REMARK 1 AUTH 2 N.G.RAMSDEN,I.BRUCE,M.G.ORCHARD,N.G.OIKONOMAKOS, REMARK 1 AUTH 3 A.C.PAPAGEORGIOU,D.D.LEONIDAS,H.S.TSITOURA REMARK 1 TITL GLUCOSE ANALOGUE INHIBITORS OF GLYCOGEN PHOSPHORYLASE: THE REMARK 1 TITL 2 DESIGN OF POTENTIAL DRUGS FOR DIABETES REMARK 1 REF BIOCHEMISTRY V. 30 10101 1991 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH K.R.ACHARYA,D.I.STUART,K.M.VARVILL,L.N.JOHNSON REMARK 1 REF GLYCOGEN PHOSPHORYLASE B: 1991 REMARK 1 REF 2 DESCRIPTION OF THE PROTEIN REMARK 1 REF 3 STRUCTURE REMARK 1 PUBL SINGAPORE : WORLD SCIENTIFIC REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 75007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-FACTOR REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3967 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6642 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 795 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1A8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78974 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.17400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: A 1.5 ANGSTROMS MODEL (E.P.MITCHELL, UNPUBLISHED) REMARK 200 AND PDB ENTRY 1GPB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS CRYSTALLIZED FROM 0.01 REMARK 280 M BES, PH 6.7, 0.003 M DTT, 0.001 M SPERMINE, 0.0001 M SODIUM REMARK 280 EDTA, 0.02 % SODIUM AZIDE AT 16 DEGREES C. THE CRYSTALS WERE REMARK 280 SOAKED IN 0.1 M SPIROHYDANTOIN AND CRYOPROTECTED WITH 25% (V/V) REMARK 280 MPD (2-METHYL-2,4- PENTANEDIOL)., TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.90000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.73500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.85000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.73500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.95000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.73500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.73500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.85000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.73500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.73500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.95000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 115.80000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ARG A 2 REMARK 465 PRO A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 ASP A 251 REMARK 465 PHE A 252 REMARK 465 ASN A 253 REMARK 465 LEU A 254 REMARK 465 LYS A 255 REMARK 465 ASP A 256 REMARK 465 PHE A 257 REMARK 465 ASN A 258 REMARK 465 VAL A 259 REMARK 465 GLY A 260 REMARK 465 GLY A 317 REMARK 465 CYS A 318 REMARK 465 ARG A 319 REMARK 465 ASP A 320 REMARK 465 PRO A 321 REMARK 465 VAL A 322 REMARK 465 ALA A 836 REMARK 465 PRO A 837 REMARK 465 ASP A 838 REMARK 465 GLU A 839 REMARK 465 LYS A 840 REMARK 465 ILE A 841 REMARK 465 PRO A 842 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1173 O HOH A 1173 7556 1.83 REMARK 500 O HOH A 1065 O HOH A 1521 7556 1.94 REMARK 500 O HOH A 1254 O HOH A 1648 7555 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ASP A 42 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 60 CD - NE - CZ ANGL. DEV. = 32.4 DEGREES REMARK 500 ARG A 60 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 69 CD - NE - CZ ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 81 CD - NE - CZ ANGL. DEV. = 27.3 DEGREES REMARK 500 ARG A 81 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 81 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR A 84 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR A 84 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 93 NH1 - CZ - NH2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 93 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 160 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 TYR A 161 CB - CG - CD2 ANGL. DEV. = 4.1 DEGREES REMARK 500 GLU A 195 OE1 - CD - OE2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 205 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 TYR A 233 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 234 CD - NE - CZ ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG A 234 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 234 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 242 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASN A 250 CA - C - O ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 269 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 277 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 TYR A 280 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 309 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 309 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 310 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 360 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 360 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ILE A 380 N - CA - CB ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG A 386 NE - CZ - NH1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 386 NE - CZ - NH2 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 398 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 413 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 413 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 424 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 438 CD - NE - CZ ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 438 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 438 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ALA A 456 N - CA - CB ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 457 NH1 - CZ - NH2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 457 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 489 NH1 - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 489 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 490 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 74 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 13 99.17 -68.20 REMARK 500 ALA A 19 76.24 -103.09 REMARK 500 LEU A 131 36.28 -80.28 REMARK 500 TYR A 203 -133.17 61.59 REMARK 500 THR A 209 -155.26 -117.88 REMARK 500 PRO A 281 37.15 -83.10 REMARK 500 SER A 314 -91.80 -71.82 REMARK 500 LYS A 315 -119.68 -102.63 REMARK 500 ASN A 325 -75.30 -59.90 REMARK 500 ASP A 339 -173.73 68.85 REMARK 500 THR A 466 -69.22 -127.36 REMARK 500 ARG A 489 -74.16 -73.39 REMARK 500 LEU A 492 -63.66 -154.66 REMARK 500 ASP A 514 66.05 -165.52 REMARK 500 ASN A 560 62.46 -101.60 REMARK 500 LYS A 568 167.03 173.41 REMARK 500 SER A 674 -55.06 -144.02 REMARK 500 PHE A 709 78.06 -108.57 REMARK 500 SER A 751 60.10 -156.84 REMARK 500 GLN A 754 75.34 -151.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TRP A 491 -10.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 1A8I A 1 842 UNP P00489 PHS2_RABIT 1 842 SEQADV 1A8I ILE A 380 UNP P00489 LEU 380 SEE REMARK 999 SEQADV 1A8I LLP A 680 UNP P00489 LYS 680 MODIFIED RESIDUE SEQRES 1 A 842 SER ARG PRO LEU SER ASP GLN GLU LYS ARG LYS GLN ILE SEQRES 2 A 842 SER VAL ARG GLY LEU ALA GLY VAL GLU ASN VAL THR GLU SEQRES 3 A 842 LEU LYS LYS ASN PHE ASN ARG HIS LEU HIS PHE THR LEU SEQRES 4 A 842 VAL LYS ASP ARG ASN VAL ALA THR PRO ARG ASP TYR TYR SEQRES 5 A 842 PHE ALA LEU ALA HIS THR VAL ARG ASP HIS LEU VAL GLY SEQRES 6 A 842 ARG TRP ILE ARG THR GLN GLN HIS TYR TYR GLU LYS ASP SEQRES 7 A 842 PRO LYS ARG ILE TYR TYR LEU SER LEU GLU PHE TYR MET SEQRES 8 A 842 GLY ARG THR LEU GLN ASN THR MET VAL ASN LEU ALA LEU SEQRES 9 A 842 GLU ASN ALA CYS ASP GLU ALA THR TYR GLN LEU GLY LEU SEQRES 10 A 842 ASP MET GLU GLU LEU GLU GLU ILE GLU GLU ASP ALA GLY SEQRES 11 A 842 LEU GLY ASN GLY GLY LEU GLY ARG LEU ALA ALA CYS PHE SEQRES 12 A 842 LEU ASP SER MET ALA THR LEU GLY LEU ALA ALA TYR GLY SEQRES 13 A 842 TYR GLY ILE ARG TYR GLU PHE GLY ILE PHE ASN GLN LYS SEQRES 14 A 842 ILE CYS GLY GLY TRP GLN MET GLU GLU ALA ASP ASP TRP SEQRES 15 A 842 LEU ARG TYR GLY ASN PRO TRP GLU LYS ALA ARG PRO GLU SEQRES 16 A 842 PHE THR LEU PRO VAL HIS PHE TYR GLY ARG VAL GLU HIS SEQRES 17 A 842 THR SER GLN GLY ALA LYS TRP VAL ASP THR GLN VAL VAL SEQRES 18 A 842 LEU ALA MET PRO TYR ASP THR PRO VAL PRO GLY TYR ARG SEQRES 19 A 842 ASN ASN VAL VAL ASN THR MET ARG LEU TRP SER ALA LYS SEQRES 20 A 842 ALA PRO ASN ASP PHE ASN LEU LYS ASP PHE ASN VAL GLY SEQRES 21 A 842 GLY TYR ILE GLN ALA VAL LEU ASP ARG ASN LEU ALA GLU SEQRES 22 A 842 ASN ILE SER ARG VAL LEU TYR PRO ASN ASP ASN PHE PHE SEQRES 23 A 842 GLU GLY LYS GLU LEU ARG LEU LYS GLN GLU TYR PHE VAL SEQRES 24 A 842 VAL ALA ALA THR LEU GLN ASP ILE ILE ARG ARG PHE LYS SEQRES 25 A 842 SER SER LYS PHE GLY CYS ARG ASP PRO VAL ARG THR ASN SEQRES 26 A 842 PHE ASP ALA PHE PRO ASP LYS VAL ALA ILE GLN LEU ASN SEQRES 27 A 842 ASP THR HIS PRO SER LEU ALA ILE PRO GLU LEU MET ARG SEQRES 28 A 842 VAL LEU VAL ASP LEU GLU ARG LEU ASP TRP ASP LYS ALA SEQRES 29 A 842 TRP GLU VAL THR VAL LYS THR CYS ALA TYR THR ASN HIS SEQRES 30 A 842 THR VAL ILE PRO GLU ALA LEU GLU ARG TRP PRO VAL HIS SEQRES 31 A 842 LEU LEU GLU THR LEU LEU PRO ARG HIS LEU GLN ILE ILE SEQRES 32 A 842 TYR GLU ILE ASN GLN ARG PHE LEU ASN ARG VAL ALA ALA SEQRES 33 A 842 ALA PHE PRO GLY ASP VAL ASP ARG LEU ARG ARG MET SER SEQRES 34 A 842 LEU VAL GLU GLU GLY ALA VAL LYS ARG ILE ASN MET ALA SEQRES 35 A 842 HIS LEU CYS ILE ALA GLY SER HIS ALA VAL ASN GLY VAL SEQRES 36 A 842 ALA ARG ILE HIS SER GLU ILE LEU LYS LYS THR ILE PHE SEQRES 37 A 842 LYS ASP PHE TYR GLU LEU GLU PRO HIS LYS PHE GLN ASN SEQRES 38 A 842 LYS THR ASN GLY ILE THR PRO ARG ARG TRP LEU VAL LEU SEQRES 39 A 842 CYS ASN PRO GLY LEU ALA GLU ILE ILE ALA GLU ARG ILE SEQRES 40 A 842 GLY GLU GLU TYR ILE SER ASP LEU ASP GLN LEU ARG LYS SEQRES 41 A 842 LEU LEU SER TYR VAL ASP ASP GLU ALA PHE ILE ARG ASP SEQRES 42 A 842 VAL ALA LYS VAL LYS GLN GLU ASN LYS LEU LYS PHE ALA SEQRES 43 A 842 ALA TYR LEU GLU ARG GLU TYR LYS VAL HIS ILE ASN PRO SEQRES 44 A 842 ASN SER LEU PHE ASP VAL GLN VAL LYS ARG ILE HIS GLU SEQRES 45 A 842 TYR LYS ARG GLN LEU LEU ASN CYS LEU HIS VAL ILE THR SEQRES 46 A 842 LEU TYR ASN ARG ILE LYS LYS GLU PRO ASN LYS PHE VAL SEQRES 47 A 842 VAL PRO ARG THR VAL MET ILE GLY GLY LYS ALA ALA PRO SEQRES 48 A 842 GLY TYR HIS MET ALA LYS MET ILE ILE LYS LEU ILE THR SEQRES 49 A 842 ALA ILE GLY ASP VAL VAL ASN HIS ASP PRO VAL VAL GLY SEQRES 50 A 842 ASP ARG LEU ARG VAL ILE PHE LEU GLU ASN TYR ARG VAL SEQRES 51 A 842 SER LEU ALA GLU LYS VAL ILE PRO ALA ALA ASP LEU SER SEQRES 52 A 842 GLU GLN ILE SER THR ALA GLY THR GLU ALA SER GLY THR SEQRES 53 A 842 GLY ASN MET LLP PHE MET LEU ASN GLY ALA LEU THR ILE SEQRES 54 A 842 GLY THR MET ASP GLY ALA ASN VAL GLU MET ALA GLU GLU SEQRES 55 A 842 ALA GLY GLU GLU ASN PHE PHE ILE PHE GLY MET ARG VAL SEQRES 56 A 842 GLU ASP VAL ASP ARG LEU ASP GLN ARG GLY TYR ASN ALA SEQRES 57 A 842 GLN GLU TYR TYR ASP ARG ILE PRO GLU LEU ARG GLN ILE SEQRES 58 A 842 ILE GLU GLN LEU SER SER GLY PHE PHE SER PRO LYS GLN SEQRES 59 A 842 PRO ASP LEU PHE LYS ASP ILE VAL ASN MET LEU MET HIS SEQRES 60 A 842 HIS ASP ARG PHE LYS VAL PHE ALA ASP TYR GLU GLU TYR SEQRES 61 A 842 VAL LYS CYS GLN GLU ARG VAL SER ALA LEU TYR LYS ASN SEQRES 62 A 842 PRO ARG GLU TRP THR ARG MET VAL ILE ARG ASN ILE ALA SEQRES 63 A 842 THR SER GLY LYS PHE SER SER ASP ARG THR ILE ALA GLN SEQRES 64 A 842 TYR ALA ARG GLU ILE TRP GLY VAL GLU PRO SER ARG GLN SEQRES 65 A 842 ARG LEU PRO ALA PRO ASP GLU LYS ILE PRO MODRES 1A8I LLP A 680 LYS HET LLP A 680 24 HET GLS A 998 17 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM GLS BETA-D-GLUCOPYRANOSE SPIROHYDANTOIN HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 GLS C8 H12 N2 O7 FORMUL 3 HOH *795(H2 O) HELIX 1 1 GLU A 8 GLN A 12 1 5 HELIX 2 2 SER A 14 ARG A 16 5 3 HELIX 3 3 VAL A 21 PHE A 37 1 17 HELIX 4 4 PRO A 48 LYS A 77 1 30 HELIX 5 5 LEU A 95 LEU A 102 1 8 HELIX 6 6 GLU A 105 GLN A 114 1 10 HELIX 7 7 MET A 119 ILE A 125 1 7 HELIX 8 8 GLY A 135 THR A 149 1 15 HELIX 9 9 PRO A 194 PHE A 196 5 3 HELIX 10 10 TYR A 262 SER A 276 1 15 HELIX 11 11 GLU A 290 LYS A 312 1 23 HELIX 12 12 THR A 324 LYS A 332 1 9 HELIX 13 13 SER A 343 ASP A 355 5 13 HELIX 14 14 TRP A 361 THR A 371 1 11 HELIX 15 15 PRO A 381 ALA A 383 5 3 HELIX 16 16 VAL A 389 LEU A 395 1 7 HELIX 17 17 PRO A 397 ALA A 417 1 21 HELIX 18 18 VAL A 422 MET A 428 1 7 HELIX 19 19 MET A 441 ALA A 447 1 7 HELIX 20 20 ARG A 457 LYS A 465 1 9 HELIX 21 21 LYS A 469 LEU A 474 1 6 HELIX 22 22 PRO A 476 LYS A 478 5 3 HELIX 23 23 PRO A 497 ILE A 507 1 11 HELIX 24 24 GLU A 510 SER A 513 5 4 HELIX 25 25 LEU A 515 TYR A 524 5 10 HELIX 26 26 GLU A 528 TYR A 553 1 26 HELIX 27 27 GLU A 572 LYS A 574 5 3 HELIX 28 28 GLN A 576 LYS A 592 1 17 HELIX 29 29 HIS A 614 HIS A 632 1 19 HELIX 30 30 VAL A 650 ALA A 659 1 10 HELIX 31 31 GLY A 677 LEU A 683 1 7 HELIX 32 32 GLY A 694 ALA A 703 5 10 HELIX 33 33 GLU A 705 ASN A 707 5 3 HELIX 34 34 VAL A 715 ARG A 724 1 10 HELIX 35 35 ALA A 728 ARG A 734 1 7 HELIX 36 36 PRO A 736 SER A 747 1 12 HELIX 37 37 LYS A 759 HIS A 767 1 9 HELIX 38 38 VAL A 773 TYR A 791 5 19 HELIX 39 39 PRO A 794 THR A 807 1 14 HELIX 40 40 GLY A 809 PHE A 811 5 3 HELIX 41 41 SER A 813 GLU A 823 1 11 SHEET 1 A 9 LYS A 191 ARG A 193 0 SHEET 2 A 9 VAL A 221 PRO A 231 -1 N ASP A 227 O LYS A 191 SHEET 3 A 9 VAL A 238 ALA A 248 -1 N LYS A 247 O LEU A 222 SHEET 4 A 9 ALA A 154 ILE A 159 1 N GLY A 156 O THR A 240 SHEET 5 A 9 ARG A 81 LEU A 85 1 N ILE A 82 O TYR A 155 SHEET 6 A 9 VAL A 333 ASN A 338 1 N ALA A 334 O ARG A 81 SHEET 7 A 9 CYS A 372 THR A 375 1 N ALA A 373 O ILE A 335 SHEET 8 A 9 ALA A 451 GLY A 454 1 N ALA A 451 O TYR A 374 SHEET 9 A 9 PHE A 479 ASN A 481 1 N GLN A 480 O VAL A 452 SHEET 1 B 2 ASN A 167 CYS A 171 0 SHEET 2 B 2 TRP A 174 GLU A 178 -1 N GLU A 178 O ASN A 167 SHEET 1 C 2 LEU A 198 PHE A 202 0 SHEET 2 C 2 GLN A 219 ALA A 223 -1 N ALA A 223 O LEU A 198 SHEET 1 D 2 ARG A 205 THR A 209 0 SHEET 2 D 2 GLY A 212 VAL A 216 -1 N VAL A 216 O ARG A 205 SHEET 1 E 2 ARG A 386 PRO A 388 0 SHEET 2 E 2 ARG A 438 ASN A 440 -1 N ILE A 439 O TRP A 387 SHEET 1 F 3 LEU A 562 VAL A 567 0 SHEET 2 F 3 ARG A 601 GLY A 606 1 N THR A 602 O LEU A 562 SHEET 3 F 3 LEU A 640 LEU A 645 1 N ARG A 641 O ARG A 601 SHEET 1 G 2 LEU A 662 GLN A 665 0 SHEET 2 G 2 LEU A 687 GLY A 690 1 N LEU A 687 O SER A 663 LINK C MET A 679 N LLP A 680 1555 1555 1.34 LINK C LLP A 680 N PHE A 681 1555 1555 1.35 CRYST1 127.470 127.470 115.800 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007845 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008636 0.00000