data_1A9P # _entry.id 1A9P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1A9P pdb_00001a9p 10.2210/pdb1a9p/pdb WWPDB D_1000170567 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1A9P _pdbx_database_status.recvd_initial_deposition_date 1998-04-10 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mao, C.' 1 'Cook, W.J.' 2 'Zhou, M.' 3 'Fedorov, A.A.' 4 'Almo, S.C.' 5 'Ealick, S.E.' 6 # _citation.id primary _citation.title 'Calf spleen purine nucleoside phosphorylase complexed with substrates and substrate analogues.' _citation.journal_abbrev Biochemistry _citation.journal_volume 37 _citation.page_first 7135 _citation.page_last 7146 _citation.year 1998 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9585525 _citation.pdbx_database_id_DOI 10.1021/bi9723919 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mao, C.' 1 ? primary 'Cook, W.J.' 2 ? primary 'Zhou, M.' 3 ? primary 'Federov, A.A.' 4 ? primary 'Almo, S.C.' 5 ? primary 'Ealick, S.E.' 6 ? # _cell.entry_id 1A9P _cell.length_a 94.200 _cell.length_b 94.200 _cell.length_c 94.200 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A9P _symmetry.space_group_name_H-M 'P 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'PURINE NUCLEOSIDE PHOSPHORYLASE' 32065.471 1 2.4.2.1 ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 non-polymer syn 9-DEAZAINOSINE 267.238 1 ? ? ? ? 4 water nat water 18.015 25 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVM MQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFP AMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG ; _entity_poly.pdbx_seq_one_letter_code_can ;MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVM MQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFP AMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ASN n 1 4 GLY n 1 5 TYR n 1 6 THR n 1 7 TYR n 1 8 GLU n 1 9 ASP n 1 10 TYR n 1 11 GLN n 1 12 ASP n 1 13 THR n 1 14 ALA n 1 15 LYS n 1 16 TRP n 1 17 LEU n 1 18 LEU n 1 19 SER n 1 20 HIS n 1 21 THR n 1 22 GLU n 1 23 GLN n 1 24 ARG n 1 25 PRO n 1 26 GLN n 1 27 VAL n 1 28 ALA n 1 29 VAL n 1 30 ILE n 1 31 CYS n 1 32 GLY n 1 33 SER n 1 34 GLY n 1 35 LEU n 1 36 GLY n 1 37 GLY n 1 38 LEU n 1 39 VAL n 1 40 ASN n 1 41 LYS n 1 42 LEU n 1 43 THR n 1 44 GLN n 1 45 ALA n 1 46 GLN n 1 47 THR n 1 48 PHE n 1 49 ASP n 1 50 TYR n 1 51 SER n 1 52 GLU n 1 53 ILE n 1 54 PRO n 1 55 ASN n 1 56 PHE n 1 57 PRO n 1 58 GLU n 1 59 SER n 1 60 THR n 1 61 VAL n 1 62 PRO n 1 63 GLY n 1 64 HIS n 1 65 ALA n 1 66 GLY n 1 67 ARG n 1 68 LEU n 1 69 VAL n 1 70 PHE n 1 71 GLY n 1 72 ILE n 1 73 LEU n 1 74 ASN n 1 75 GLY n 1 76 ARG n 1 77 ALA n 1 78 CYS n 1 79 VAL n 1 80 MET n 1 81 MET n 1 82 GLN n 1 83 GLY n 1 84 ARG n 1 85 PHE n 1 86 HIS n 1 87 MET n 1 88 TYR n 1 89 GLU n 1 90 GLY n 1 91 TYR n 1 92 PRO n 1 93 PHE n 1 94 TRP n 1 95 LYS n 1 96 VAL n 1 97 THR n 1 98 PHE n 1 99 PRO n 1 100 VAL n 1 101 ARG n 1 102 VAL n 1 103 PHE n 1 104 ARG n 1 105 LEU n 1 106 LEU n 1 107 GLY n 1 108 VAL n 1 109 GLU n 1 110 THR n 1 111 LEU n 1 112 VAL n 1 113 VAL n 1 114 THR n 1 115 ASN n 1 116 ALA n 1 117 ALA n 1 118 GLY n 1 119 GLY n 1 120 LEU n 1 121 ASN n 1 122 PRO n 1 123 ASN n 1 124 PHE n 1 125 GLU n 1 126 VAL n 1 127 GLY n 1 128 ASP n 1 129 ILE n 1 130 MET n 1 131 LEU n 1 132 ILE n 1 133 ARG n 1 134 ASP n 1 135 HIS n 1 136 ILE n 1 137 ASN n 1 138 LEU n 1 139 PRO n 1 140 GLY n 1 141 PHE n 1 142 SER n 1 143 GLY n 1 144 GLU n 1 145 ASN n 1 146 PRO n 1 147 LEU n 1 148 ARG n 1 149 GLY n 1 150 PRO n 1 151 ASN n 1 152 GLU n 1 153 GLU n 1 154 ARG n 1 155 PHE n 1 156 GLY n 1 157 VAL n 1 158 ARG n 1 159 PHE n 1 160 PRO n 1 161 ALA n 1 162 MET n 1 163 SER n 1 164 ASP n 1 165 ALA n 1 166 TYR n 1 167 ASP n 1 168 ARG n 1 169 ASP n 1 170 MET n 1 171 ARG n 1 172 GLN n 1 173 LYS n 1 174 ALA n 1 175 HIS n 1 176 SER n 1 177 THR n 1 178 TRP n 1 179 LYS n 1 180 GLN n 1 181 MET n 1 182 GLY n 1 183 GLU n 1 184 GLN n 1 185 ARG n 1 186 GLU n 1 187 LEU n 1 188 GLN n 1 189 GLU n 1 190 GLY n 1 191 THR n 1 192 TYR n 1 193 VAL n 1 194 MET n 1 195 LEU n 1 196 GLY n 1 197 GLY n 1 198 PRO n 1 199 ASN n 1 200 PHE n 1 201 GLU n 1 202 THR n 1 203 VAL n 1 204 ALA n 1 205 GLU n 1 206 CYS n 1 207 ARG n 1 208 LEU n 1 209 LEU n 1 210 ARG n 1 211 ASN n 1 212 LEU n 1 213 GLY n 1 214 ALA n 1 215 ASP n 1 216 ALA n 1 217 VAL n 1 218 GLY n 1 219 MET n 1 220 SER n 1 221 THR n 1 222 VAL n 1 223 PRO n 1 224 GLU n 1 225 VAL n 1 226 ILE n 1 227 VAL n 1 228 ALA n 1 229 ARG n 1 230 HIS n 1 231 CYS n 1 232 GLY n 1 233 LEU n 1 234 ARG n 1 235 VAL n 1 236 PHE n 1 237 GLY n 1 238 PHE n 1 239 SER n 1 240 LEU n 1 241 ILE n 1 242 THR n 1 243 ASN n 1 244 LYS n 1 245 VAL n 1 246 ILE n 1 247 MET n 1 248 ASP n 1 249 THR n 1 250 GLU n 1 251 SER n 1 252 GLN n 1 253 GLY n 1 254 LYS n 1 255 ALA n 1 256 ASN n 1 257 HIS n 1 258 GLU n 1 259 GLU n 1 260 VAL n 1 261 LEU n 1 262 GLU n 1 263 ALA n 1 264 GLY n 1 265 LYS n 1 266 GLN n 1 267 ALA n 1 268 ALA n 1 269 GLN n 1 270 LYS n 1 271 LEU n 1 272 GLU n 1 273 GLN n 1 274 PHE n 1 275 VAL n 1 276 SER n 1 277 LEU n 1 278 LEU n 1 279 MET n 1 280 ALA n 1 281 SER n 1 282 ILE n 1 283 PRO n 1 284 VAL n 1 285 SER n 1 286 GLY n 1 287 HIS n 1 288 THR n 1 289 GLY n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name cattle _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus Bos _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ SPLEEN _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PNPH_BOVIN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P55859 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVM MQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFP AMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL ITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1A9P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 289 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P55859 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 289 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 289 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1A9P _struct_ref_seq_dif.mon_id THR _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 249 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P55859 _struct_ref_seq_dif.db_mon_id TYR _struct_ref_seq_dif.pdbx_seq_db_seq_num 249 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 249 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 9DI non-polymer . 9-DEAZAINOSINE ? 'C11 H13 N3 O5' 267.238 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1A9P _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_percent_sol 43.35 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range 7.8-8.2 _exptl_crystal_grow.pdbx_details ;PROTEIN WAS CRYSTALLIZED FROM 31-35% PEG-400 IN 100 MM HEPES OR TRIS BUFFER, PH 7.8-8.2; 100 MM MGCL2; 1% OCTYL-BETA- D-GLUCOPYRANOSIDE ; # _diffrn.id 1 _diffrn.ambient_temp 296 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'XUONG-HAMLIN MULTIWIRE' _diffrn_detector.pdbx_collection_date 1996-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1A9P _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 8. _reflns.d_resolution_high 2.4 _reflns.number_obs 10457 _reflns.number_all ? _reflns.percent_possible_obs 97 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1A9P _refine.ls_number_reflns_obs 10457 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8. _refine.ls_d_res_high 2.4 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 12. _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1PBN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2246 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 2295 _refine_hist.d_res_high 2.4 _refine_hist.d_res_low 8. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.2 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 PARAM11.DNA TOPH11.DNA 'X-RAY DIFFRACTION' # _struct.entry_id 1A9P _struct.title 'BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH 9-DEAZAINOSINE AND PHOSPHATE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1A9P _struct_keywords.pdbx_keywords PENTOSYLTRANSFERASE _struct_keywords.text 'PENTOSYLTRANSFERASE, PURINE NUCLEOSIDE PHOSPHORYLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 7 ? LEU A 18 ? TYR A 7 LEU A 18 1 ? 12 HELX_P HELX_P2 2 GLY A 36 ? LYS A 41 ? GLY A 36 LYS A 41 5 ? 6 HELX_P HELX_P3 3 TYR A 50 ? GLU A 52 ? TYR A 50 GLU A 52 5 ? 3 HELX_P HELX_P4 4 MET A 87 ? GLU A 89 ? MET A 87 GLU A 89 5 ? 3 HELX_P HELX_P5 5 PHE A 93 ? VAL A 96 ? PHE A 93 VAL A 96 1 ? 4 HELX_P HELX_P6 6 PHE A 98 ? LEU A 106 ? PHE A 98 LEU A 106 1 ? 9 HELX_P HELX_P7 7 LEU A 138 ? SER A 142 ? LEU A 138 SER A 142 1 ? 5 HELX_P HELX_P8 8 ARG A 168 ? MET A 181 ? ARG A 168 MET A 181 1 ? 14 HELX_P HELX_P9 9 VAL A 203 ? ASN A 211 ? VAL A 203 ASN A 211 1 ? 9 HELX_P HELX_P10 10 VAL A 222 ? CYS A 231 ? VAL A 222 CYS A 231 1 ? 10 HELX_P HELX_P11 11 HIS A 257 ? ALA A 263 ? HIS A 257 ALA A 263 5 ? 7 HELX_P HELX_P12 12 ALA A 268 ? LEU A 278 ? ALA A 268 LEU A 278 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 197 A . ? GLY 197 A PRO 198 A ? PRO 198 A 1 0.27 2 ILE 282 A . ? ILE 282 A PRO 283 A ? PRO 283 A 1 0.08 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 216 ? GLY A 218 ? ALA A 216 GLY A 218 A 2 GLN A 188 ? MET A 194 ? GLN A 188 MET A 194 A 3 ILE A 129 ? ASN A 137 ? ILE A 129 ASN A 137 A 4 ARG A 234 ? LYS A 244 ? ARG A 234 LYS A 244 A 5 THR A 110 ? GLY A 119 ? THR A 110 GLY A 119 A 6 VAL A 27 ? CYS A 31 ? VAL A 27 CYS A 31 A 7 ARG A 76 ? GLN A 82 ? ARG A 76 GLN A 82 A 8 ARG A 67 ? LEU A 73 ? ARG A 67 LEU A 73 A 9 GLN A 46 ? ASP A 49 ? GLN A 46 ASP A 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 216 ? O ALA A 216 N VAL A 193 ? N VAL A 193 A 2 3 O GLN A 188 ? O GLN A 188 N LEU A 131 ? N LEU A 131 A 3 4 O MET A 130 ? O MET A 130 N SER A 239 ? N SER A 239 A 4 5 O ARG A 234 ? O ARG A 234 N LEU A 111 ? N LEU A 111 A 5 6 O THR A 110 ? O THR A 110 N ALA A 28 ? N ALA A 28 A 6 7 O VAL A 27 ? O VAL A 27 N VAL A 79 ? N VAL A 79 A 7 8 O ARG A 76 ? O ARG A 76 N LEU A 73 ? N LEU A 73 A 8 9 O LEU A 68 ? O LEU A 68 N PHE A 48 ? N PHE A 48 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details 9NE Unknown ? ? ? ? 6 ? PNG Unknown ? ? ? ? 6 ? AC1 Software A PO4 291 ? 10 'BINDING SITE FOR RESIDUE PO4 A 291' AC2 Software A 9DI 290 ? 12 'BINDING SITE FOR RESIDUE 9DI A 290' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 9NE 6 TYR A 88 ? TYR A 88 . ? 1_555 ? 2 9NE 6 GLU A 201 ? GLU A 201 . ? 1_555 ? 3 9NE 6 MET A 219 ? MET A 219 . ? 1_555 ? 4 9NE 6 ASN A 243 ? ASN A 243 . ? 1_555 ? 5 9NE 6 HIS A 257 ? HIS A 257 . ? 1_555 ? 6 9NE 6 GLU A 259 ? GLU A 259 . ? 1_555 ? 7 PNG 6 SER A 33 ? SER A 33 . ? 1_555 ? 8 PNG 6 HIS A 64 ? HIS A 64 . ? 1_555 ? 9 PNG 6 ARG A 84 ? ARG A 84 . ? 1_555 ? 10 PNG 6 HIS A 86 ? HIS A 86 . ? 1_555 ? 11 PNG 6 ALA A 116 ? ALA A 116 . ? 1_555 ? 12 PNG 6 SER A 220 ? SER A 220 . ? 1_555 ? 13 AC1 10 GLY A 32 ? GLY A 32 . ? 1_555 ? 14 AC1 10 SER A 33 ? SER A 33 . ? 1_555 ? 15 AC1 10 HIS A 64 ? HIS A 64 . ? 1_555 ? 16 AC1 10 ARG A 84 ? ARG A 84 . ? 1_555 ? 17 AC1 10 HIS A 86 ? HIS A 86 . ? 1_555 ? 18 AC1 10 ASN A 115 ? ASN A 115 . ? 1_555 ? 19 AC1 10 ALA A 116 ? ALA A 116 . ? 1_555 ? 20 AC1 10 SER A 220 ? SER A 220 . ? 1_555 ? 21 AC1 10 9DI C . ? 9DI A 290 . ? 1_555 ? 22 AC1 10 HOH D . ? HOH A 311 . ? 1_555 ? 23 AC2 12 HIS A 86 ? HIS A 86 . ? 1_555 ? 24 AC2 12 TYR A 88 ? TYR A 88 . ? 1_555 ? 25 AC2 12 ALA A 116 ? ALA A 116 . ? 1_555 ? 26 AC2 12 GLY A 118 ? GLY A 118 . ? 1_555 ? 27 AC2 12 PHE A 200 ? PHE A 200 . ? 1_555 ? 28 AC2 12 GLU A 201 ? GLU A 201 . ? 1_555 ? 29 AC2 12 MET A 219 ? MET A 219 . ? 1_555 ? 30 AC2 12 THR A 242 ? THR A 242 . ? 1_555 ? 31 AC2 12 ASN A 243 ? ASN A 243 . ? 1_555 ? 32 AC2 12 HIS A 257 ? HIS A 257 . ? 1_555 ? 33 AC2 12 GLU A 259 ? GLU A 259 . ? 1_555 ? 34 AC2 12 PO4 B . ? PO4 A 291 . ? 1_555 ? # _database_PDB_matrix.entry_id 1A9P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1A9P _atom_sites.fract_transf_matrix[1][1] 0.010616 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010616 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010616 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 TRP 16 16 16 TRP TRP A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 HIS 64 64 64 HIS HIS A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 CYS 78 78 78 CYS CYS A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 MET 80 80 80 MET MET A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 MET 87 87 87 MET MET A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 TRP 94 94 94 TRP TRP A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 PHE 124 124 124 PHE PHE A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 MET 130 130 130 MET MET A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 HIS 135 135 135 HIS HIS A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 ASN 137 137 137 ASN ASN A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 PHE 141 141 141 PHE PHE A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 PRO 146 146 146 PRO PRO A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 PRO 150 150 150 PRO PRO A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 GLU 152 152 152 GLU GLU A . n A 1 153 GLU 153 153 153 GLU GLU A . n A 1 154 ARG 154 154 154 ARG ARG A . n A 1 155 PHE 155 155 155 PHE PHE A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 ARG 158 158 158 ARG ARG A . n A 1 159 PHE 159 159 159 PHE PHE A . n A 1 160 PRO 160 160 160 PRO PRO A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 MET 162 162 162 MET MET A . n A 1 163 SER 163 163 163 SER SER A . n A 1 164 ASP 164 164 164 ASP ASP A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 TYR 166 166 166 TYR TYR A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 ASP 169 169 169 ASP ASP A . n A 1 170 MET 170 170 170 MET MET A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 GLN 172 172 172 GLN GLN A . n A 1 173 LYS 173 173 173 LYS LYS A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 HIS 175 175 175 HIS HIS A . n A 1 176 SER 176 176 176 SER SER A . n A 1 177 THR 177 177 177 THR THR A . n A 1 178 TRP 178 178 178 TRP TRP A . n A 1 179 LYS 179 179 179 LYS LYS A . n A 1 180 GLN 180 180 180 GLN GLN A . n A 1 181 MET 181 181 181 MET MET A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 GLN 184 184 184 GLN GLN A . n A 1 185 ARG 185 185 185 ARG ARG A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 GLN 188 188 188 GLN GLN A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 GLY 190 190 190 GLY GLY A . n A 1 191 THR 191 191 191 THR THR A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 VAL 193 193 193 VAL VAL A . n A 1 194 MET 194 194 194 MET MET A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 GLY 196 196 196 GLY GLY A . n A 1 197 GLY 197 197 197 GLY GLY A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 ASN 199 199 199 ASN ASN A . n A 1 200 PHE 200 200 200 PHE PHE A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 THR 202 202 202 THR THR A . n A 1 203 VAL 203 203 203 VAL VAL A . n A 1 204 ALA 204 204 204 ALA ALA A . n A 1 205 GLU 205 205 205 GLU GLU A . n A 1 206 CYS 206 206 206 CYS CYS A . n A 1 207 ARG 207 207 207 ARG ARG A . n A 1 208 LEU 208 208 208 LEU LEU A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 ARG 210 210 210 ARG ARG A . n A 1 211 ASN 211 211 211 ASN ASN A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 GLY 213 213 213 GLY GLY A . n A 1 214 ALA 214 214 214 ALA ALA A . n A 1 215 ASP 215 215 215 ASP ASP A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 VAL 217 217 217 VAL VAL A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 MET 219 219 219 MET MET A . n A 1 220 SER 220 220 220 SER SER A . n A 1 221 THR 221 221 221 THR THR A . n A 1 222 VAL 222 222 222 VAL VAL A . n A 1 223 PRO 223 223 223 PRO PRO A . n A 1 224 GLU 224 224 224 GLU GLU A . n A 1 225 VAL 225 225 225 VAL VAL A . n A 1 226 ILE 226 226 226 ILE ILE A . n A 1 227 VAL 227 227 227 VAL VAL A . n A 1 228 ALA 228 228 228 ALA ALA A . n A 1 229 ARG 229 229 229 ARG ARG A . n A 1 230 HIS 230 230 230 HIS HIS A . n A 1 231 CYS 231 231 231 CYS CYS A . n A 1 232 GLY 232 232 232 GLY GLY A . n A 1 233 LEU 233 233 233 LEU LEU A . n A 1 234 ARG 234 234 234 ARG ARG A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 PHE 236 236 236 PHE PHE A . n A 1 237 GLY 237 237 237 GLY GLY A . n A 1 238 PHE 238 238 238 PHE PHE A . n A 1 239 SER 239 239 239 SER SER A . n A 1 240 LEU 240 240 240 LEU LEU A . n A 1 241 ILE 241 241 241 ILE ILE A . n A 1 242 THR 242 242 242 THR THR A . n A 1 243 ASN 243 243 243 ASN ASN A . n A 1 244 LYS 244 244 244 LYS LYS A . n A 1 245 VAL 245 245 245 VAL VAL A . n A 1 246 ILE 246 246 246 ILE ILE A . n A 1 247 MET 247 247 247 MET MET A . n A 1 248 ASP 248 248 248 ASP ASP A . n A 1 249 THR 249 249 249 THR THR A . n A 1 250 GLU 250 250 250 GLU GLU A . n A 1 251 SER 251 251 251 SER SER A . n A 1 252 GLN 252 252 252 GLN GLN A . n A 1 253 GLY 253 253 253 GLY GLY A . n A 1 254 LYS 254 254 254 LYS LYS A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 ASN 256 256 256 ASN ASN A . n A 1 257 HIS 257 257 257 HIS HIS A . n A 1 258 GLU 258 258 258 GLU GLU A . n A 1 259 GLU 259 259 259 GLU GLU A . n A 1 260 VAL 260 260 260 VAL VAL A . n A 1 261 LEU 261 261 261 LEU LEU A . n A 1 262 GLU 262 262 262 GLU GLU A . n A 1 263 ALA 263 263 263 ALA ALA A . n A 1 264 GLY 264 264 264 GLY GLY A . n A 1 265 LYS 265 265 265 LYS LYS A . n A 1 266 GLN 266 266 266 GLN GLN A . n A 1 267 ALA 267 267 267 ALA ALA A . n A 1 268 ALA 268 268 268 ALA ALA A . n A 1 269 GLN 269 269 269 GLN GLN A . n A 1 270 LYS 270 270 270 LYS LYS A . n A 1 271 LEU 271 271 271 LEU LEU A . n A 1 272 GLU 272 272 272 GLU GLU A . n A 1 273 GLN 273 273 273 GLN GLN A . n A 1 274 PHE 274 274 274 PHE PHE A . n A 1 275 VAL 275 275 275 VAL VAL A . n A 1 276 SER 276 276 276 SER SER A . n A 1 277 LEU 277 277 277 LEU LEU A . n A 1 278 LEU 278 278 278 LEU LEU A . n A 1 279 MET 279 279 279 MET MET A . n A 1 280 ALA 280 280 280 ALA ALA A . n A 1 281 SER 281 281 281 SER SER A . n A 1 282 ILE 282 282 282 ILE ILE A . n A 1 283 PRO 283 283 283 PRO PRO A . n A 1 284 VAL 284 284 284 VAL VAL A . n A 1 285 SER 285 285 285 SER SER A . n A 1 286 GLY 286 286 286 GLY GLY A . n A 1 287 HIS 287 287 287 HIS HIS A . n A 1 288 THR 288 288 288 THR THR A . n A 1 289 GLY 289 289 289 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 291 291 PO4 PO4 A . C 3 9DI 1 290 290 9DI 9DI A . D 4 HOH 1 292 292 HOH HOH A . D 4 HOH 2 293 293 HOH HOH A . D 4 HOH 3 294 294 HOH HOH A . D 4 HOH 4 295 295 HOH HOH A . D 4 HOH 5 296 296 HOH HOH A . D 4 HOH 6 297 297 HOH HOH A . D 4 HOH 7 298 298 HOH HOH A . D 4 HOH 8 299 299 HOH HOH A . D 4 HOH 9 300 300 HOH HOH A . D 4 HOH 10 301 301 HOH HOH A . D 4 HOH 11 302 302 HOH HOH A . D 4 HOH 12 303 303 HOH HOH A . D 4 HOH 13 304 304 HOH HOH A . D 4 HOH 14 305 305 HOH HOH A . D 4 HOH 15 306 306 HOH HOH A . D 4 HOH 16 307 307 HOH HOH A . D 4 HOH 17 308 308 HOH HOH A . D 4 HOH 18 309 309 HOH HOH A . D 4 HOH 19 310 310 HOH HOH A . D 4 HOH 20 311 311 HOH HOH A . D 4 HOH 21 312 312 HOH HOH A . D 4 HOH 22 313 313 HOH HOH A . D 4 HOH 23 314 314 HOH HOH A . D 4 HOH 24 315 315 HOH HOH A . D 4 HOH 25 316 316 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9440 ? 1 MORE -64 ? 1 'SSA (A^2)' 30940 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_656 -z+1,x+1/2,-y+3/2 0.0000000000 0.0000000000 -1.0000000000 94.2000000000 1.0000000000 0.0000000000 0.0000000000 47.1000000000 0.0000000000 -1.0000000000 0.0000000000 141.3000000000 3 'crystal symmetry operation' 11_466 y-1/2,-z+3/2,-x+1 0.0000000000 1.0000000000 0.0000000000 -47.1000000000 0.0000000000 0.0000000000 -1.0000000000 141.3000000000 -1.0000000000 0.0000000000 0.0000000000 94.2000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-07-15 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_initial_refinement_model 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.8 ? 1 X-PLOR refinement 3.8 ? 2 SDMS 'data reduction' . ? 3 SDMS 'data scaling' . ? 4 X-PLOR phasing 3.8 ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 2 ? ? -67.60 -161.88 2 1 ASN A 40 ? ? -74.37 35.70 3 1 PRO A 54 ? ? -12.76 -94.87 4 1 PHE A 159 ? ? -112.99 77.54 5 1 SER A 220 ? ? -163.28 -158.56 6 1 THR A 221 ? ? 69.23 -57.29 7 1 GLU A 258 ? ? -59.73 -2.98 8 1 ALA A 263 ? ? -90.21 -79.53 9 1 LYS A 265 ? ? 174.88 -81.42 10 1 GLN A 266 ? ? -50.50 -70.73 11 1 ALA A 267 ? ? -95.46 33.78 12 1 SER A 281 ? ? 160.94 137.54 13 1 VAL A 284 ? ? 9.70 -66.54 14 1 SER A 285 ? ? 79.31 83.56 15 1 HIS A 287 ? ? 65.92 -66.23 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 2 ? CG ? A GLN 2 CG 2 1 Y 1 A GLN 2 ? CD ? A GLN 2 CD 3 1 Y 1 A GLN 2 ? OE1 ? A GLN 2 OE1 4 1 Y 1 A GLN 2 ? NE2 ? A GLN 2 NE2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 9-DEAZAINOSINE 9DI 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PBN _pdbx_initial_refinement_model.details 'PDB ENTRY 1PBN' #