HEADER FATTY ACID BINDING PROTEIN 30-JAN-97 1AB0 TITLE C1G/V32D/F57H MUTANT OF MURINE ADIPOCYTE LIPID BINDING PROTEIN AT PH TITLE 2 4.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADIPOCYTE LIPID BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALBP; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL: ADIPOCYTE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FATTY ACID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.ORY,C.KANE,M.SIMPSON,L.BANASZAK,D.BERNLOHR REVDAT 5 22-MAY-24 1AB0 1 REMARK REVDAT 4 02-AUG-23 1AB0 1 REMARK REVDAT 3 03-NOV-21 1AB0 1 SEQADV REVDAT 2 24-FEB-09 1AB0 1 VERSN REVDAT 1 16-JUN-97 1AB0 0 JRNL AUTH J.ORY,C.D.KANE,M.A.SIMPSON,L.J.BANASZAK,D.A.BERNLOHR JRNL TITL BIOCHEMICAL AND CRYSTALLOGRAPHIC ANALYSES OF A PORTAL MUTANT JRNL TITL 2 OF THE ADIPOCYTE LIPID-BINDING PROTEIN. JRNL REF J.BIOL.CHEM. V. 272 9793 1997 JRNL REFN ISSN 0021-9258 JRNL PMID 9092513 JRNL DOI 10.1074/JBC.272.15.9793 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 77.2 REMARK 3 NUMBER OF REFLECTIONS : 8326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 864 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 30.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 357 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 36 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.002 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.03 REMARK 3 LOW RESOLUTION CUTOFF (A) : 25.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.07 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.540 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.060 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-94 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN REMARK 200 DATA SCALING SOFTWARE : XENGEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10324 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 26.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.56600 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1LIB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M AMSO4 50MM NAKPO4 100 MM ACETATE, REMARK 280 PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.26000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.23500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.39000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.23500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.13000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.23500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.23500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.39000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.23500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.23500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.13000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.26000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -56.47000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 56.47000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.52000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 36 140.87 -172.19 REMARK 500 PRO A 38 164.84 -48.70 REMARK 500 HIS A 57 -41.83 -152.66 REMARK 500 TRP A 97 135.42 -172.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: POR REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: MUTATED PORTAL REGION, PROPOSED SITE OF LIGAND REMARK 800 ENTRY. DBREF 1AB0 A 2 131 UNP P04117 FABPA_MOUSE 2 131 SEQADV 1AB0 ASP A 32 UNP P04117 VAL 32 ENGINEERED MUTATION SEQADV 1AB0 HIS A 57 UNP P04117 PHE 57 ENGINEERED MUTATION SEQRES 1 A 131 GLY ASP ALA PHE VAL GLY THR TRP LYS LEU VAL SER SER SEQRES 2 A 131 GLU ASN PHE ASP ASP TYR MET LYS GLU VAL GLY VAL GLY SEQRES 3 A 131 PHE ALA THR ARG LYS ASP ALA GLY MET ALA LYS PRO ASN SEQRES 4 A 131 MET ILE ILE SER VAL ASN GLY ASP LEU VAL THR ILE ARG SEQRES 5 A 131 SER GLU SER THR HIS LYS ASN THR GLU ILE SER PHE LYS SEQRES 6 A 131 LEU GLY VAL GLU PHE ASP GLU ILE THR ALA ASP ASP ARG SEQRES 7 A 131 LYS VAL LYS SER ILE ILE THR LEU ASP GLY GLY ALA LEU SEQRES 8 A 131 VAL GLN VAL GLN LYS TRP ASP GLY LYS SER THR THR ILE SEQRES 9 A 131 LYS ARG LYS ARG ASP GLY ASP LYS LEU VAL VAL GLU CYS SEQRES 10 A 131 VAL MET LYS GLY VAL THR SER THR ARG VAL TYR GLU ARG SEQRES 11 A 131 ALA FORMUL 2 HOH *30(H2 O) HELIX 1 1 ASP A 2 PHE A 4 5 3 HELIX 2 2 PHE A 16 VAL A 23 1 8 HELIX 3 3 PHE A 27 GLY A 34 1 8 SHEET 1 A10 THR A 60 PHE A 64 0 SHEET 2 A10 LEU A 48 GLU A 54 -1 N SER A 53 O THR A 60 SHEET 3 A10 ASN A 39 ASN A 45 -1 N ASN A 45 O LEU A 48 SHEET 4 A10 GLY A 6 GLU A 14 -1 N TRP A 8 O MET A 40 SHEET 5 A10 VAL A 122 ARG A 130 -1 N GLU A 129 O LYS A 9 SHEET 6 A10 LYS A 112 MET A 119 -1 N MET A 119 O VAL A 122 SHEET 7 A10 LYS A 100 ASP A 109 -1 N ASP A 109 O LYS A 112 SHEET 8 A10 ALA A 90 TRP A 97 -1 N TRP A 97 O LYS A 100 SHEET 9 A10 LYS A 79 ASP A 87 -1 N ASP A 87 O ALA A 90 SHEET 10 A10 PHE A 70 ILE A 73 -1 N GLU A 72 O VAL A 80 SITE 1 POR 2 ASP A 32 HIS A 57 CRYST1 56.470 56.470 80.520 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017709 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012419 0.00000 TER 1015 ALA A 131 HETATM 1016 O HOH A 132 12.432 48.973 49.667 1.00 11.41 O HETATM 1017 O HOH A 133 29.208 37.901 45.330 1.00 10.59 O HETATM 1018 O HOH A 134 5.106 46.948 55.590 1.00 13.73 O HETATM 1019 O HOH A 135 20.239 44.498 33.900 1.00 18.36 O HETATM 1020 O HOH A 136 23.814 44.231 33.908 1.00 22.65 O HETATM 1021 O HOH A 137 10.873 58.006 27.583 1.00 24.74 O HETATM 1022 O HOH A 138 22.003 40.518 34.445 1.00 23.71 O HETATM 1023 O HOH A 139 8.014 62.955 39.524 1.00 45.40 O HETATM 1024 O HOH A 140 11.984 45.257 56.507 1.00 21.24 O HETATM 1025 O HOH A 141 24.551 45.942 41.239 1.00 21.09 O HETATM 1026 O HOH A 142 26.857 41.070 45.125 1.00 25.79 O HETATM 1027 O HOH A 143 2.934 53.730 56.910 1.00 17.97 O HETATM 1028 O HOH A 144 25.714 42.083 34.165 1.00 23.81 O HETATM 1029 O HOH A 145 -1.011 55.516 49.486 1.00 17.63 O HETATM 1030 O HOH A 146 28.454 43.163 38.255 1.00 28.73 O HETATM 1031 O HOH A 147 11.204 59.892 53.741 1.00 21.05 O HETATM 1032 O HOH A 148 14.837 65.762 46.625 1.00 50.76 O HETATM 1033 O HOH A 149 4.276 43.280 43.426 1.00 49.12 O HETATM 1034 O HOH A 150 -1.110 45.528 26.348 1.00 59.82 O HETATM 1035 O HOH A 151 12.227 39.988 44.387 1.00 28.84 O HETATM 1036 O HOH A 152 10.050 63.261 46.784 1.00 32.19 O HETATM 1037 O HOH A 153 4.927 48.147 42.766 1.00 39.72 O HETATM 1038 O HOH A 154 1.577 55.702 43.680 1.00 29.54 O HETATM 1039 O HOH A 155 16.998 57.129 51.469 1.00 42.75 O HETATM 1040 O HOH A 156 6.697 42.881 41.754 1.00 29.14 O HETATM 1041 O HOH A 157 2.732 59.865 43.531 1.00 43.25 O HETATM 1042 O HOH A 158 17.300 30.133 54.544 1.00 57.94 O HETATM 1043 O HOH A 159 21.767 46.958 49.264 1.00 36.17 O HETATM 1044 O HOH A 160 3.386 56.393 56.203 1.00 31.27 O HETATM 1045 O HOH A 161 0.530 42.610 45.267 1.00 33.84 O MASTER 249 0 0 3 10 0 1 6 1044 1 0 11 END