data_1AC3 # _entry.id 1AC3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.390 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AC3 pdb_00001ac3 10.2210/pdb1ac3/pdb WWPDB D_1000170640 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-06-16 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-07-31 5 'Structure model' 2 0 2020-07-22 6 'Structure model' 2 1 2024-04-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Polymer sequence' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' ndb_struct_na_base_pair 3 4 'Structure model' ndb_struct_na_base_pair_step 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_struct_assembly 6 4 'Structure model' pdbx_struct_oper_list 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_keywords 9 5 'Structure model' entity_poly 10 5 'Structure model' pdbx_struct_assembly 11 5 'Structure model' pdbx_struct_assembly_gen 12 6 'Structure model' chem_comp_atom 13 6 'Structure model' chem_comp_bond 14 6 'Structure model' database_2 15 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.type' 2 4 'Structure model' '_ndb_struct_na_base_pair.buckle' 3 4 'Structure model' '_ndb_struct_na_base_pair_step.tilt' 4 4 'Structure model' '_pdbx_database_status.process_site' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_keywords.text' 7 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 8 6 'Structure model' '_database_2.pdbx_DOI' 9 6 'Structure model' '_database_2.pdbx_database_accession' 10 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 11 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 18 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 19 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AC3 _pdbx_database_status.recvd_initial_deposition_date 1997-02-11 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cross, C.W.' 1 'Rice, J.S.' 2 'Gao, X.' 3 # _citation.id primary _citation.title ;Solution structure of an RNA x DNA hybrid duplex containing a 3'-thioformacetal linker and an RNA A-tract. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 36 _citation.page_first 4096 _citation.page_last 4107 _citation.year 1997 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9100003 _citation.pdbx_database_id_DOI 10.1021/bi962382k # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cross, C.W.' 1 ? primary 'Rice, J.S.' 2 ? primary 'Gao, X.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'ANTISENSE HYBRID DUPLEX' 3595.477 1 ? ? ? ;T6-3'-THIOFORMACETAL IN THE DNA STRAND ; 2 polymer syn ;DNA (5'-D(*(TCP)P*TP*GP*CP*GP*C)-3') ; 3873.416 1 ? ? ? ;T6-3'-THIOFORMACETAL IN THE DNA STRAND ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DC)(DG)(DT)(TSP)(TCP)(DT)(DG)(DC)(DG)(DC)' CGCGTTTTGCGC A ? 2 polyribonucleotide no no GCGCAAAACGCG GCGCAAAACGCG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DT n 1 6 TSP n 1 7 TCP n 1 8 DT n 1 9 DG n 1 10 DC n 1 11 DG n 1 12 DC n 2 1 G n 2 2 C n 2 3 G n 2 4 C n 2 5 A n 2 6 A n 2 7 A n 2 8 A n 2 9 C n 2 10 G n 2 11 C n 2 12 G n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 TCP 'DNA linking' n "5'-METHYLTHYMIDINE" ? 'C11 H16 N2 O5' 256.255 TSP 'DNA linking' n "3'-THIO-THYMIDINE-5'-PHOSPHATE" ? 'C10 H15 N2 O7 P S' 338.274 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 TSP 6 6 6 TSP TSP A . n A 1 7 TCP 7 7 7 TCP TCP A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DC 12 12 12 DC C A . n B 2 1 G 1 13 13 G G B . n B 2 2 C 2 14 14 C C B . n B 2 3 G 3 15 15 G G B . n B 2 4 C 4 16 16 C C B . n B 2 5 A 5 17 17 A A B . n B 2 6 A 6 18 18 A A B . n B 2 7 A 7 19 19 A A B . n B 2 8 A 8 20 20 A A B . n B 2 9 C 9 21 21 C C B . n B 2 10 G 10 22 22 G G B . n B 2 11 C 11 23 23 C C B . n B 2 12 G 12 24 24 G G B . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # _cell.entry_id 1AC3 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AC3 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1AC3 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1AC3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1AC3 _struct.title ;SOLUTION STRUCTURE OF AN RNA-DNA HYBRID DUPLEX CONTAINING A 3'-THIOFORMACETAL LINKER AND AN RNA A-TRACT, NMR, 8 STRUCTURES ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AC3 _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'RNA, DNA, ANTISENSE OLIGONUCLEOTIDES, THIOFORMACETAL BACKBONE MODIFICATION, HYBRID DUPLEX, DNA-RNA HYBRID COMPLEX, DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1AC3 1 ? ? 1AC3 ? 2 PDB 1AC3 2 ? ? 1AC3 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AC3 A 1 ? 12 ? 1AC3 1 ? 12 ? 1 12 2 2 1AC3 B 1 ? 12 ? 1AC3 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 5 "O3'" ? ? ? 1_555 A TSP 6 P ? ? A DT 5 A TSP 6 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale none ? A TSP 6 "S3'" ? ? ? 1_555 A TCP 7 CP ? ? A TSP 6 A TCP 7 1_555 ? ? ? ? ? ? ? 1.810 ? ? covale3 covale both ? A TCP 7 "O3'" ? ? ? 1_555 A DT 8 P ? ? A TCP 7 A DT 8 1_555 ? ? ? ? ? ? ? 1.610 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B G 12 N1 ? ? A DC 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B G 12 O6 ? ? A DC 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B G 12 N2 ? ? A DC 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B C 11 N3 ? ? A DG 2 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B C 11 O2 ? ? A DG 2 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B C 11 N4 ? ? A DG 2 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B G 10 N1 ? ? A DC 3 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B G 10 O6 ? ? A DC 3 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B G 10 N2 ? ? A DC 3 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B C 9 N3 ? ? A DG 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B C 9 O2 ? ? A DG 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B C 9 N4 ? ? A DG 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B A 8 N1 ? ? A DT 5 B A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B A 8 N6 ? ? A DT 5 B A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A TSP 6 N3 ? ? ? 1_555 B A 7 N1 ? ? A TSP 6 B A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A TSP 6 O4 ? ? ? 1_555 B A 7 N6 ? ? A TSP 6 B A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A TCP 7 N3 ? ? ? 1_555 B A 6 N1 ? ? A TCP 7 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A TCP 7 O4 ? ? ? 1_555 B A 6 N6 ? ? A TCP 7 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B A 5 N1 ? ? A DT 8 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B A 5 N6 ? ? A DT 8 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B C 4 N3 ? ? A DG 9 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B C 4 O2 ? ? A DG 9 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B C 4 N4 ? ? A DG 9 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B G 3 N1 ? ? A DC 10 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B G 3 O6 ? ? A DC 10 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B G 3 N2 ? ? A DC 10 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B C 2 N3 ? ? A DG 11 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B C 2 O2 ? ? A DG 11 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B C 2 N4 ? ? A DG 11 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B G 1 N1 ? ? A DC 12 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B G 1 O6 ? ? A DC 12 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B G 1 N2 ? ? A DC 12 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.57 108.30 5.27 0.30 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.35 108.30 3.05 0.30 N 3 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 112.94 108.30 4.64 0.30 N 4 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.54 108.30 4.24 0.30 N 5 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.71 108.30 4.41 0.30 N 6 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.28 108.30 2.98 0.30 N 7 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.74 108.30 3.44 0.30 N 8 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.13 108.30 2.83 0.30 N 9 1 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.74 108.30 3.44 0.30 N 10 1 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.20 108.50 4.70 0.70 N 11 1 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.43 108.50 4.93 0.70 N 12 1 "O4'" B A 19 ? ? "C1'" B A 19 ? ? N9 B A 19 ? ? 113.63 108.50 5.13 0.70 N 13 1 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 113.10 108.50 4.60 0.70 N 14 1 "O4'" B C 23 ? ? "C1'" B C 23 ? ? N1 B C 23 ? ? 114.49 108.50 5.99 0.70 N 15 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.38 108.30 5.08 0.30 N 16 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.35 108.30 3.05 0.30 N 17 2 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 112.94 108.30 4.64 0.30 N 18 2 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.02 108.30 3.72 0.30 N 19 2 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.28 108.30 3.98 0.30 N 20 2 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.33 108.30 3.03 0.30 N 21 2 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.25 108.30 3.95 0.30 N 22 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.15 108.30 2.85 0.30 N 23 2 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 112.12 108.30 3.82 0.30 N 24 2 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.73 108.50 5.23 0.70 N 25 2 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 112.95 108.50 4.45 0.70 N 26 2 "O4'" B A 19 ? ? "C1'" B A 19 ? ? N9 B A 19 ? ? 113.61 108.50 5.11 0.70 N 27 2 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 113.25 108.50 4.75 0.70 N 28 2 "O4'" B C 23 ? ? "C1'" B C 23 ? ? N1 B C 23 ? ? 114.43 108.50 5.93 0.70 N 29 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.68 108.30 5.38 0.30 N 30 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.41 108.30 3.11 0.30 N 31 3 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 113.46 108.30 5.16 0.30 N 32 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.64 108.30 3.34 0.30 N 33 3 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.31 108.30 4.01 0.30 N 34 3 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.64 108.30 3.34 0.30 N 35 3 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.20 108.30 3.90 0.30 N 36 3 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.65 108.30 2.35 0.30 N 37 3 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.51 108.30 3.21 0.30 N 38 3 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.69 108.50 5.19 0.70 N 39 3 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.96 108.50 5.46 0.70 N 40 3 "O4'" B A 19 ? ? "C1'" B A 19 ? ? N9 B A 19 ? ? 113.45 108.50 4.95 0.70 N 41 3 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 112.92 108.50 4.42 0.70 N 42 3 "O4'" B C 23 ? ? "C1'" B C 23 ? ? N1 B C 23 ? ? 114.55 108.50 6.05 0.70 N 43 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.72 108.30 5.42 0.30 N 44 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.29 108.30 2.99 0.30 N 45 4 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 113.02 108.30 4.72 0.30 N 46 4 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.45 108.30 3.15 0.30 N 47 4 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.45 108.30 4.15 0.30 N 48 4 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.88 108.30 3.58 0.30 N 49 4 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.69 108.30 4.39 0.30 N 50 4 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.07 108.30 2.77 0.30 N 51 4 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.90 108.30 3.60 0.30 N 52 4 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.32 108.50 4.82 0.70 N 53 4 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.48 108.50 4.98 0.70 N 54 4 "O4'" B A 19 ? ? "C1'" B A 19 ? ? N9 B A 19 ? ? 113.46 108.50 4.96 0.70 N 55 4 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 113.17 108.50 4.67 0.70 N 56 4 "O4'" B C 23 ? ? "C1'" B C 23 ? ? N1 B C 23 ? ? 114.24 108.50 5.74 0.70 N 57 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.75 108.30 5.45 0.30 N 58 5 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.75 108.30 3.45 0.30 N 59 5 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 113.26 108.30 4.96 0.30 N 60 5 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.58 108.30 3.28 0.30 N 61 5 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.66 108.30 3.36 0.30 N 62 5 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.80 108.30 3.50 0.30 N 63 5 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.25 108.30 3.95 0.30 N 64 5 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.48 108.30 2.18 0.30 N 65 5 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.17 108.30 2.87 0.30 N 66 5 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.49 108.50 4.99 0.70 N 67 5 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.35 108.50 4.85 0.70 N 68 5 "O4'" B A 19 ? ? "C1'" B A 19 ? ? N9 B A 19 ? ? 113.30 108.50 4.80 0.70 N 69 5 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 112.78 108.50 4.28 0.70 N 70 5 "O4'" B C 23 ? ? "C1'" B C 23 ? ? N1 B C 23 ? ? 114.31 108.50 5.81 0.70 N 71 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.58 108.30 5.28 0.30 N 72 6 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.44 108.30 3.14 0.30 N 73 6 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 113.22 108.30 4.92 0.30 N 74 6 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.81 108.30 3.51 0.30 N 75 6 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.18 108.30 3.88 0.30 N 76 6 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.29 108.30 2.99 0.30 N 77 6 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.35 108.30 3.05 0.30 N 78 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.24 108.30 2.94 0.30 N 79 6 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 112.17 108.30 3.87 0.30 N 80 6 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.44 108.50 4.94 0.70 N 81 6 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.84 108.50 5.34 0.70 N 82 6 "O4'" B A 19 ? ? "C1'" B A 19 ? ? N9 B A 19 ? ? 113.16 108.50 4.66 0.70 N 83 6 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 113.00 108.50 4.50 0.70 N 84 6 "O4'" B C 23 ? ? "C1'" B C 23 ? ? N1 B C 23 ? ? 114.11 108.50 5.61 0.70 N 85 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.47 108.30 5.17 0.30 N 86 7 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.66 108.30 3.36 0.30 N 87 7 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 112.96 108.30 4.66 0.30 N 88 7 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.55 108.30 3.25 0.30 N 89 7 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.37 108.30 4.07 0.30 N 90 7 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.53 108.30 3.23 0.30 N 91 7 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.93 108.30 3.63 0.30 N 92 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.40 108.30 3.10 0.30 N 93 7 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.75 108.30 3.45 0.30 N 94 7 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.16 108.50 4.66 0.70 N 95 7 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.37 108.50 4.87 0.70 N 96 7 "O4'" B A 19 ? ? "C1'" B A 19 ? ? N9 B A 19 ? ? 113.15 108.50 4.65 0.70 N 97 7 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 113.22 108.50 4.72 0.70 N 98 7 "O4'" B C 23 ? ? "C1'" B C 23 ? ? N1 B C 23 ? ? 113.90 108.50 5.40 0.70 N 99 8 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.86 108.30 4.56 0.30 N 100 8 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.83 108.30 3.53 0.30 N 101 8 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 112.64 108.30 4.34 0.30 N 102 8 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.02 108.30 3.72 0.30 N 103 8 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.74 108.30 4.44 0.30 N 104 8 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.96 108.30 3.66 0.30 N 105 8 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.96 108.30 3.66 0.30 N 106 8 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.17 108.30 2.87 0.30 N 107 8 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 110.84 108.30 2.54 0.30 N 108 8 "O4'" B G 13 ? ? "C1'" B G 13 ? ? N9 B G 13 ? ? 112.73 108.50 4.23 0.70 N 109 8 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.31 108.50 4.81 0.70 N 110 8 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.15 108.50 4.65 0.70 N 111 8 "O4'" B A 19 ? ? "C1'" B A 19 ? ? N9 B A 19 ? ? 113.57 108.50 5.07 0.70 N 112 8 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 113.22 108.50 4.72 0.70 N 113 8 "O4'" B C 23 ? ? "C1'" B C 23 ? ? N1 B C 23 ? ? 113.89 108.50 5.39 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 G B 15 ? ? 0.075 'SIDE CHAIN' 2 3 C B 21 ? ? 0.060 'SIDE CHAIN' 3 6 C B 21 ? ? 0.069 'SIDE CHAIN' 4 7 C B 21 ? ? 0.070 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A TSP 6 A TSP 6 ? T "3'-THIO-THYMIDINE-5'-PHOSPHATE" 2 A TCP 7 A TCP 7 ? DT "5'-METHYLTHYMIDINE" # _pdbx_nmr_ensemble.entry_id 1AC3 _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 8 _pdbx_nmr_ensemble.conformer_selection_criteria 'IDEAL GEOMETRY, NOE VIOLATIONS, COORDINATE RMSD' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 ? 7.0 ? ? K 2 288 ? 7.0 ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 DQF-COSY 1 # _pdbx_nmr_details.entry_id 1AC3 _pdbx_nmr_details.text ;IONIC_STRENGTH: 0.1 M NACL, 10 MM PO4 PRESSURE: 1 SOLVENT SYSTEM: AQUEOUS THE STRUCTURE WAS DETERMINED USING PROTON-PROTON AND PROTON-PHOSPHOROUS 1D AND 2D NMR SPECTROSCOPY. ; # _pdbx_nmr_refine.entry_id 1AC3 _pdbx_nmr_refine.method 'SIMULATED ANNEALING, MOLECULAR DYNAMICS SIMULATIONS AND RELAXATION MATRIX REFINEMENT' _pdbx_nmr_refine.details ;1. GENERATE DISTANCE RESTRAINTS USING MARDIGRAS PROGRAM FROM T. JAMES' LAB. 2. MODEL BUILDING T. JAMES' LAB.USING QUANTA. 3. RANDOMIZE STRUCTURES BY DYNAMICS SIMULATIONS. 4. ITERATIVE CALCULATIONS. 5. FINAL RELAXATION MATRIX REFINEMENT. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR ? BRUNGER 1 'structure solution' X-PLOR ? ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DC OP3 O N N 73 DC P P N N 74 DC OP1 O N N 75 DC OP2 O N N 76 DC "O5'" O N N 77 DC "C5'" C N N 78 DC "C4'" C N R 79 DC "O4'" O N N 80 DC "C3'" C N S 81 DC "O3'" O N N 82 DC "C2'" C N N 83 DC "C1'" C N R 84 DC N1 N N N 85 DC C2 C N N 86 DC O2 O N N 87 DC N3 N N N 88 DC C4 C N N 89 DC N4 N N N 90 DC C5 C N N 91 DC C6 C N N 92 DC HOP3 H N N 93 DC HOP2 H N N 94 DC "H5'" H N N 95 DC "H5''" H N N 96 DC "H4'" H N N 97 DC "H3'" H N N 98 DC "HO3'" H N N 99 DC "H2'" H N N 100 DC "H2''" H N N 101 DC "H1'" H N N 102 DC H41 H N N 103 DC H42 H N N 104 DC H5 H N N 105 DC H6 H N N 106 DG OP3 O N N 107 DG P P N N 108 DG OP1 O N N 109 DG OP2 O N N 110 DG "O5'" O N N 111 DG "C5'" C N N 112 DG "C4'" C N R 113 DG "O4'" O N N 114 DG "C3'" C N S 115 DG "O3'" O N N 116 DG "C2'" C N N 117 DG "C1'" C N R 118 DG N9 N Y N 119 DG C8 C Y N 120 DG N7 N Y N 121 DG C5 C Y N 122 DG C6 C N N 123 DG O6 O N N 124 DG N1 N N N 125 DG C2 C N N 126 DG N2 N N N 127 DG N3 N N N 128 DG C4 C Y N 129 DG HOP3 H N N 130 DG HOP2 H N N 131 DG "H5'" H N N 132 DG "H5''" H N N 133 DG "H4'" H N N 134 DG "H3'" H N N 135 DG "HO3'" H N N 136 DG "H2'" H N N 137 DG "H2''" H N N 138 DG "H1'" H N N 139 DG H8 H N N 140 DG H1 H N N 141 DG H21 H N N 142 DG H22 H N N 143 DT OP3 O N N 144 DT P P N N 145 DT OP1 O N N 146 DT OP2 O N N 147 DT "O5'" O N N 148 DT "C5'" C N N 149 DT "C4'" C N R 150 DT "O4'" O N N 151 DT "C3'" C N S 152 DT "O3'" O N N 153 DT "C2'" C N N 154 DT "C1'" C N R 155 DT N1 N N N 156 DT C2 C N N 157 DT O2 O N N 158 DT N3 N N N 159 DT C4 C N N 160 DT O4 O N N 161 DT C5 C N N 162 DT C7 C N N 163 DT C6 C N N 164 DT HOP3 H N N 165 DT HOP2 H N N 166 DT "H5'" H N N 167 DT "H5''" H N N 168 DT "H4'" H N N 169 DT "H3'" H N N 170 DT "HO3'" H N N 171 DT "H2'" H N N 172 DT "H2''" H N N 173 DT "H1'" H N N 174 DT H3 H N N 175 DT H71 H N N 176 DT H72 H N N 177 DT H73 H N N 178 DT H6 H N N 179 G OP3 O N N 180 G P P N N 181 G OP1 O N N 182 G OP2 O N N 183 G "O5'" O N N 184 G "C5'" C N N 185 G "C4'" C N R 186 G "O4'" O N N 187 G "C3'" C N S 188 G "O3'" O N N 189 G "C2'" C N R 190 G "O2'" O N N 191 G "C1'" C N R 192 G N9 N Y N 193 G C8 C Y N 194 G N7 N Y N 195 G C5 C Y N 196 G C6 C N N 197 G O6 O N N 198 G N1 N N N 199 G C2 C N N 200 G N2 N N N 201 G N3 N N N 202 G C4 C Y N 203 G HOP3 H N N 204 G HOP2 H N N 205 G "H5'" H N N 206 G "H5''" H N N 207 G "H4'" H N N 208 G "H3'" H N N 209 G "HO3'" H N N 210 G "H2'" H N N 211 G "HO2'" H N N 212 G "H1'" H N N 213 G H8 H N N 214 G H1 H N N 215 G H21 H N N 216 G H22 H N N 217 TCP CP C N N 218 TCP "O5'" O N N 219 TCP "C5'" C N N 220 TCP "C4'" C N R 221 TCP "O4'" O N N 222 TCP "C3'" C N S 223 TCP "O3'" O N N 224 TCP "C2'" C N N 225 TCP "C1'" C N R 226 TCP N1 N N N 227 TCP C2 C N N 228 TCP O2 O N N 229 TCP N3 N N N 230 TCP C4 C N N 231 TCP O4 O N N 232 TCP C5 C N N 233 TCP C5M C N N 234 TCP C6 C N N 235 TCP HP1 H N N 236 TCP HP2 H N N 237 TCP HP3 H N N 238 TCP "H5'" H N N 239 TCP "H5''" H N N 240 TCP "H4'" H N N 241 TCP "H3'" H N N 242 TCP "HO3'" H N N 243 TCP "H2'" H N N 244 TCP "H2''" H N N 245 TCP "H1'" H N N 246 TCP HN3 H N N 247 TCP H71 H N N 248 TCP H72 H N N 249 TCP H73 H N N 250 TCP H6 H N N 251 TSP P P N N 252 TSP OP1 O N N 253 TSP OP2 O N N 254 TSP OP3 O N N 255 TSP "O5'" O N N 256 TSP "C5'" C N N 257 TSP "C4'" C N R 258 TSP "O4'" O N N 259 TSP "C3'" C N S 260 TSP "S3'" S N N 261 TSP "C2'" C N N 262 TSP "C1'" C N R 263 TSP N1 N N N 264 TSP C2 C N N 265 TSP O2 O N N 266 TSP N3 N N N 267 TSP C4 C N N 268 TSP O4 O N N 269 TSP C5 C N N 270 TSP C5M C N N 271 TSP C6 C N N 272 TSP HOP2 H N N 273 TSP HOP3 H N N 274 TSP "H5'" H N N 275 TSP "H5''" H N N 276 TSP "H4'" H N N 277 TSP "H3'" H N N 278 TSP "HS3'" H N N 279 TSP "H2'" H N N 280 TSP "H2''" H N N 281 TSP "H1'" H N N 282 TSP HN3 H N N 283 TSP H71 H N N 284 TSP H72 H N N 285 TSP H73 H N N 286 TSP H6 H N N 287 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DC OP3 P sing N N 76 DC OP3 HOP3 sing N N 77 DC P OP1 doub N N 78 DC P OP2 sing N N 79 DC P "O5'" sing N N 80 DC OP2 HOP2 sing N N 81 DC "O5'" "C5'" sing N N 82 DC "C5'" "C4'" sing N N 83 DC "C5'" "H5'" sing N N 84 DC "C5'" "H5''" sing N N 85 DC "C4'" "O4'" sing N N 86 DC "C4'" "C3'" sing N N 87 DC "C4'" "H4'" sing N N 88 DC "O4'" "C1'" sing N N 89 DC "C3'" "O3'" sing N N 90 DC "C3'" "C2'" sing N N 91 DC "C3'" "H3'" sing N N 92 DC "O3'" "HO3'" sing N N 93 DC "C2'" "C1'" sing N N 94 DC "C2'" "H2'" sing N N 95 DC "C2'" "H2''" sing N N 96 DC "C1'" N1 sing N N 97 DC "C1'" "H1'" sing N N 98 DC N1 C2 sing N N 99 DC N1 C6 sing N N 100 DC C2 O2 doub N N 101 DC C2 N3 sing N N 102 DC N3 C4 doub N N 103 DC C4 N4 sing N N 104 DC C4 C5 sing N N 105 DC N4 H41 sing N N 106 DC N4 H42 sing N N 107 DC C5 C6 doub N N 108 DC C5 H5 sing N N 109 DC C6 H6 sing N N 110 DG OP3 P sing N N 111 DG OP3 HOP3 sing N N 112 DG P OP1 doub N N 113 DG P OP2 sing N N 114 DG P "O5'" sing N N 115 DG OP2 HOP2 sing N N 116 DG "O5'" "C5'" sing N N 117 DG "C5'" "C4'" sing N N 118 DG "C5'" "H5'" sing N N 119 DG "C5'" "H5''" sing N N 120 DG "C4'" "O4'" sing N N 121 DG "C4'" "C3'" sing N N 122 DG "C4'" "H4'" sing N N 123 DG "O4'" "C1'" sing N N 124 DG "C3'" "O3'" sing N N 125 DG "C3'" "C2'" sing N N 126 DG "C3'" "H3'" sing N N 127 DG "O3'" "HO3'" sing N N 128 DG "C2'" "C1'" sing N N 129 DG "C2'" "H2'" sing N N 130 DG "C2'" "H2''" sing N N 131 DG "C1'" N9 sing N N 132 DG "C1'" "H1'" sing N N 133 DG N9 C8 sing Y N 134 DG N9 C4 sing Y N 135 DG C8 N7 doub Y N 136 DG C8 H8 sing N N 137 DG N7 C5 sing Y N 138 DG C5 C6 sing N N 139 DG C5 C4 doub Y N 140 DG C6 O6 doub N N 141 DG C6 N1 sing N N 142 DG N1 C2 sing N N 143 DG N1 H1 sing N N 144 DG C2 N2 sing N N 145 DG C2 N3 doub N N 146 DG N2 H21 sing N N 147 DG N2 H22 sing N N 148 DG N3 C4 sing N N 149 DT OP3 P sing N N 150 DT OP3 HOP3 sing N N 151 DT P OP1 doub N N 152 DT P OP2 sing N N 153 DT P "O5'" sing N N 154 DT OP2 HOP2 sing N N 155 DT "O5'" "C5'" sing N N 156 DT "C5'" "C4'" sing N N 157 DT "C5'" "H5'" sing N N 158 DT "C5'" "H5''" sing N N 159 DT "C4'" "O4'" sing N N 160 DT "C4'" "C3'" sing N N 161 DT "C4'" "H4'" sing N N 162 DT "O4'" "C1'" sing N N 163 DT "C3'" "O3'" sing N N 164 DT "C3'" "C2'" sing N N 165 DT "C3'" "H3'" sing N N 166 DT "O3'" "HO3'" sing N N 167 DT "C2'" "C1'" sing N N 168 DT "C2'" "H2'" sing N N 169 DT "C2'" "H2''" sing N N 170 DT "C1'" N1 sing N N 171 DT "C1'" "H1'" sing N N 172 DT N1 C2 sing N N 173 DT N1 C6 sing N N 174 DT C2 O2 doub N N 175 DT C2 N3 sing N N 176 DT N3 C4 sing N N 177 DT N3 H3 sing N N 178 DT C4 O4 doub N N 179 DT C4 C5 sing N N 180 DT C5 C7 sing N N 181 DT C5 C6 doub N N 182 DT C7 H71 sing N N 183 DT C7 H72 sing N N 184 DT C7 H73 sing N N 185 DT C6 H6 sing N N 186 G OP3 P sing N N 187 G OP3 HOP3 sing N N 188 G P OP1 doub N N 189 G P OP2 sing N N 190 G P "O5'" sing N N 191 G OP2 HOP2 sing N N 192 G "O5'" "C5'" sing N N 193 G "C5'" "C4'" sing N N 194 G "C5'" "H5'" sing N N 195 G "C5'" "H5''" sing N N 196 G "C4'" "O4'" sing N N 197 G "C4'" "C3'" sing N N 198 G "C4'" "H4'" sing N N 199 G "O4'" "C1'" sing N N 200 G "C3'" "O3'" sing N N 201 G "C3'" "C2'" sing N N 202 G "C3'" "H3'" sing N N 203 G "O3'" "HO3'" sing N N 204 G "C2'" "O2'" sing N N 205 G "C2'" "C1'" sing N N 206 G "C2'" "H2'" sing N N 207 G "O2'" "HO2'" sing N N 208 G "C1'" N9 sing N N 209 G "C1'" "H1'" sing N N 210 G N9 C8 sing Y N 211 G N9 C4 sing Y N 212 G C8 N7 doub Y N 213 G C8 H8 sing N N 214 G N7 C5 sing Y N 215 G C5 C6 sing N N 216 G C5 C4 doub Y N 217 G C6 O6 doub N N 218 G C6 N1 sing N N 219 G N1 C2 sing N N 220 G N1 H1 sing N N 221 G C2 N2 sing N N 222 G C2 N3 doub N N 223 G N2 H21 sing N N 224 G N2 H22 sing N N 225 G N3 C4 sing N N 226 TCP CP "O5'" sing N N 227 TCP CP HP1 sing N N 228 TCP CP HP2 sing N N 229 TCP CP HP3 sing N N 230 TCP "O5'" "C5'" sing N N 231 TCP "C5'" "C4'" sing N N 232 TCP "C5'" "H5'" sing N N 233 TCP "C5'" "H5''" sing N N 234 TCP "C4'" "O4'" sing N N 235 TCP "C4'" "C3'" sing N N 236 TCP "C4'" "H4'" sing N N 237 TCP "O4'" "C1'" sing N N 238 TCP "C3'" "O3'" sing N N 239 TCP "C3'" "C2'" sing N N 240 TCP "C3'" "H3'" sing N N 241 TCP "O3'" "HO3'" sing N N 242 TCP "C2'" "C1'" sing N N 243 TCP "C2'" "H2'" sing N N 244 TCP "C2'" "H2''" sing N N 245 TCP "C1'" N1 sing N N 246 TCP "C1'" "H1'" sing N N 247 TCP N1 C2 sing N N 248 TCP N1 C6 sing N N 249 TCP C2 O2 doub N N 250 TCP C2 N3 sing N N 251 TCP N3 C4 sing N N 252 TCP N3 HN3 sing N N 253 TCP C4 O4 doub N N 254 TCP C4 C5 sing N N 255 TCP C5 C5M sing N N 256 TCP C5 C6 doub N N 257 TCP C5M H71 sing N N 258 TCP C5M H72 sing N N 259 TCP C5M H73 sing N N 260 TCP C6 H6 sing N N 261 TSP P OP1 doub N N 262 TSP P OP2 sing N N 263 TSP P OP3 sing N N 264 TSP P "O5'" sing N N 265 TSP OP2 HOP2 sing N N 266 TSP OP3 HOP3 sing N N 267 TSP "O5'" "C5'" sing N N 268 TSP "C5'" "C4'" sing N N 269 TSP "C5'" "H5'" sing N N 270 TSP "C5'" "H5''" sing N N 271 TSP "C4'" "O4'" sing N N 272 TSP "C4'" "C3'" sing N N 273 TSP "C4'" "H4'" sing N N 274 TSP "O4'" "C1'" sing N N 275 TSP "C3'" "S3'" sing N N 276 TSP "C3'" "C2'" sing N N 277 TSP "C3'" "H3'" sing N N 278 TSP "S3'" "HS3'" sing N N 279 TSP "C2'" "C1'" sing N N 280 TSP "C2'" "H2'" sing N N 281 TSP "C2'" "H2''" sing N N 282 TSP "C1'" N1 sing N N 283 TSP "C1'" "H1'" sing N N 284 TSP N1 C2 sing N N 285 TSP N1 C6 sing N N 286 TSP C2 O2 doub N N 287 TSP C2 N3 sing N N 288 TSP N3 C4 sing N N 289 TSP N3 HN3 sing N N 290 TSP C4 O4 doub N N 291 TSP C4 C5 sing N N 292 TSP C5 C5M sing N N 293 TSP C5 C6 doub N N 294 TSP C5M H71 sing N N 295 TSP C5M H72 sing N N 296 TSP C5M H73 sing N N 297 TSP C6 H6 sing N N 298 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1AC3 'double helix' 1AC3 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B G 12 1_555 0.059 0.038 -0.455 34.708 -30.013 -1.494 1 A_DC1:G24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B C 11 1_555 -0.181 -0.129 -0.163 13.060 -20.635 1.480 2 A_DG2:C23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B G 10 1_555 -0.256 -0.064 -0.291 12.470 -25.130 0.242 3 A_DC3:G22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B C 9 1_555 -0.594 -0.232 0.176 -1.280 -13.479 -2.686 4 A_DG4:C21_B A 4 ? B 21 ? 19 1 1 A DT 5 1_555 B A 8 1_555 0.128 -0.122 0.456 6.797 -5.567 -2.508 5 A_DT5:A20_B A 5 ? B 20 ? 20 1 1 A TSP 6 1_555 B A 7 1_555 0.296 -0.055 -0.618 24.486 -19.176 0.547 6 A_TSP6:A19_B A 6 ? B 19 ? 20 1 1 A TCP 7 1_555 B A 6 1_555 -0.121 0.053 -0.582 29.194 -16.153 -1.958 7 A_TCP7:A18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B A 5 1_555 0.254 -0.046 -0.910 28.838 -24.896 2.636 8 A_DT8:A17_B A 8 ? B 17 ? 20 1 1 A DG 9 1_555 B C 4 1_555 -0.586 -0.231 -0.049 7.700 -20.205 -0.305 9 A_DG9:C16_B A 9 ? B 16 ? 19 1 1 A DC 10 1_555 B G 3 1_555 0.115 -0.114 0.096 8.066 -24.822 -2.261 10 A_DC10:G15_B A 10 ? B 15 ? 19 1 1 A DG 11 1_555 B C 2 1_555 -0.166 -0.157 0.462 2.601 -19.467 -3.728 11 A_DG11:C14_B A 11 ? B 14 ? 19 1 1 A DC 12 1_555 B G 1 1_555 0.172 -0.166 0.428 11.488 -19.945 -4.690 12 A_DC12:G13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B G 12 1_555 A DG 2 1_555 B C 11 1_555 -0.587 -1.627 3.610 -7.966 27.824 31.845 -4.908 0.038 1.791 41.580 11.904 42.778 1 AA_DC1DG2:C23G24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B C 11 1_555 A DC 3 1_555 B G 10 1_555 -0.337 -1.701 3.085 -4.829 3.669 29.285 -3.997 -0.269 2.873 7.160 9.425 29.893 2 AA_DG2DC3:G22C23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B G 10 1_555 A DG 4 1_555 B C 9 1_555 -0.245 -1.794 3.321 -7.803 21.906 28.055 -5.495 -0.538 1.575 37.989 13.533 36.290 3 AA_DC3DG4:C21G22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B C 9 1_555 A DT 5 1_555 B A 8 1_555 -0.064 -1.784 3.119 -4.103 5.113 30.647 -4.184 -0.587 2.777 9.537 7.653 31.324 4 AA_DG4DT5:A20C21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DT 5 1_555 B A 8 1_555 A TSP 6 1_555 B A 7 1_555 0.105 -1.355 2.734 5.224 -0.544 31.172 -2.404 0.623 2.738 -1.003 -9.635 31.601 5 AA_DT5TSP6:A19A20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A TSP 6 1_555 B A 7 1_555 A TCP 7 1_555 B A 6 1_555 -0.351 -0.963 3.305 -1.804 10.061 31.156 -3.391 0.321 2.879 18.131 3.251 32.751 6 AA_TSP6TCP7:A18A19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A TCP 7 1_555 B A 6 1_555 A DT 8 1_555 B A 5 1_555 -0.379 -0.958 3.322 0.480 8.349 33.597 -2.875 0.710 2.999 14.172 -0.815 34.593 7 AA_TCP7DT8:A17A18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B A 5 1_555 A DG 9 1_555 B C 4 1_555 -0.384 -1.470 3.653 -9.305 26.869 25.954 -5.501 -0.544 1.578 45.781 15.854 38.317 8 AA_DT8DG9:C16A17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DG 9 1_555 B C 4 1_555 A DC 10 1_555 B G 3 1_555 -0.347 -1.035 3.068 -4.125 6.142 35.212 -2.482 0.021 2.874 10.016 6.727 35.956 9 AA_DG9DC10:G15C16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DC 10 1_555 B G 3 1_555 A DG 11 1_555 B C 2 1_555 -0.163 -1.202 3.119 -4.195 15.409 30.425 -4.162 -0.301 2.269 27.140 7.389 34.274 10 AA_DC10DG11:C14G15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DG 11 1_555 B C 2 1_555 A DC 12 1_555 B G 1 1_555 0.080 -1.137 2.973 -2.914 -0.570 34.394 -1.835 -0.546 2.975 -0.962 4.917 34.519 11 AA_DG11DC12:G13C14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AMX-II _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 1AC3 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_