data_1AC9 # _entry.id 1AC9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AC9 pdb_00001ac9 10.2210/pdb1ac9/pdb WWPDB D_1000170646 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AC9 _pdbx_database_status.recvd_initial_deposition_date 1997-02-17 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Foti, M.' 1 'Marshalko, S.' 2 'Schurter, E.' 3 'Kumar, S.' 4 'Beardsley, G.P.' 5 'Schweitzer, B.I.' 6 # _citation.id primary _citation.title ;Solution structure of a DNA decamer containing the antiviral drug ganciclovir: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 36 _citation.page_first 5336 _citation.page_last 5345 _citation.year 1997 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9154915 _citation.pdbx_database_id_DOI 10.1021/bi962604e # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Foti, M.' 1 ? primary 'Marshalko, S.' 2 ? primary 'Schurter, E.' 3 ? primary 'Kumar, S.' 4 ? primary 'Beardsley, G.P.' 5 ? primary 'Schweitzer, B.I.' 6 ? # _cell.entry_id 1AC9 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AC9 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description DNA _entity.formula_weight 3032.995 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name '(CTG-LGP-ATCCAG)' # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DT)(DG)(LGP)(DA)(DT)(DC)(DC)(DA)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CTGGATCCAG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DG n 1 4 LGP n 1 5 DA n 1 6 DT n 1 7 DC n 1 8 DC n 1 9 DA n 1 10 DG n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1AC9 _struct_ref.pdbx_db_accession 1AC9 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AC9 A 1 ? 10 ? 1AC9 1 ? 10 ? 1 10 2 1 1AC9 B 1 ? 10 ? 1AC9 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 LGP 'DNA linking' n "N9-1-HYDROXY-PROP-2-OXYMETHYL-GUANINE-3'-MONOPHOSPHATE" ;LINEAR DECARBON-C2* GUANOSINE-5'-MONOPHOSPHATE ; 'C9 H14 N5 O7 P' 335.211 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 TOCSY 1 3 1 HETEROTOCSY 1 4 1 COSY 1 5 1 DQFCOSY 1 6 1 HSQC 1 7 1 HMQC 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 283 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model UNITYPLUS _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 1AC9 _pdbx_nmr_refine.method 'RESTRAINED MOLECULAR DYNAMICS' _pdbx_nmr_refine.details ;SIX TOTAL STRUCTURES DETERMINED (3 FROM CANONICAL A-TYPE DNA AND 3 FROM CANONICAL B-TYPE DNA). ALL STRUCTURES WERE GENERATED WITH DIFFERENT STARTING RANDOM NUMBER SEEDS. STRUCTURES GENERATED FROM A-TYPE: MODELS 1 - 3 STRUCTURES GENERATED FROM B-TYPE: MOD ELS 4 - 6 ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1AC9 _pdbx_nmr_ensemble.conformers_calculated_total_number 6 _pdbx_nmr_ensemble.conformers_submitted_total_number 6 _pdbx_nmr_ensemble.conformer_selection_criteria 'LOWEST ENERGY STRUCTURE' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' FELIX95.0 ? ? 2 'structure solution' X-PLOR ? ? 3 # _exptl.entry_id 1AC9 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1AC9 _struct.title ;SOLUTION STRUCTURE OF A DNA DECAMER CONTAINING THE ANTIVIRAL DRUG GANCICLOVIR: COMBINED USE OF NMR, RESTRAINED MOLECULAR DYNAMICS, AND FULL RELAXATION REFINEMENT, 6 STRUCTURES ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AC9 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA DECAMER, DEOXYRIBONUCLEIC ACID, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 3 "O3'" ? ? ? 1_555 A LGP 4 P ? ? A DG 3 A LGP 4 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale2 covale both ? A LGP 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A LGP 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale3 covale both ? B DG 3 "O3'" ? ? ? 1_555 B LGP 4 P ? ? B DG 13 B LGP 14 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale4 covale both ? B LGP 4 "O3'" ? ? ? 1_555 B DA 5 P ? ? B LGP 14 B DA 15 1_555 ? ? ? ? ? ? ? 1.607 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 2 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 2 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A LGP 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A LGP 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A LGP 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A LGP 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A LGP 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A LGP 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 5 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 5 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B LGP 4 N1 ? ? A DC 7 B LGP 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B LGP 4 O6 ? ? A DC 7 B LGP 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B LGP 4 N2 ? ? A DC 7 B LGP 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1AC9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1AC9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 LGP 4 4 4 LGP LGP A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DT 2 12 12 DT T B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 LGP 4 14 14 LGP LGP B . n B 1 5 DA 5 15 15 DA A B . n B 1 6 DT 6 16 16 DT T B . n B 1 7 DC 7 17 17 DC C B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DA 9 19 19 DA A B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A LGP 4 A LGP 4 ? DG ? 2 B LGP 4 B LGP 14 ? DG ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-07-07 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H61 A DA 5 ? ? O4 B DT 16 ? ? 1.48 2 1 O4 A DT 6 ? ? H61 B DA 15 ? ? 1.48 3 2 H61 A DA 5 ? ? O4 B DT 16 ? ? 1.50 4 2 O4 A DT 6 ? ? H61 B DA 15 ? ? 1.51 5 3 O6 A DG 3 ? ? H41 B DC 18 ? ? 1.54 6 3 H41 A DC 8 ? ? O6 B DG 13 ? ? 1.57 7 3 O4 A DT 2 ? ? H61 B DA 19 ? ? 1.58 8 3 H21 A DG 3 ? ? O2 B DC 18 ? ? 1.58 9 3 H1 A DG 3 ? ? N3 B DC 18 ? ? 1.58 10 3 O4 A DT 6 ? ? H61 B DA 15 ? ? 1.60 11 3 H61 A DA 5 ? ? O4 B DT 16 ? ? 1.60 12 3 H61 A DA 9 ? ? O4 B DT 12 ? ? 1.60 13 5 H21 A DG 3 ? ? O2 B DC 18 ? ? 1.59 14 5 H1 A DG 3 ? ? N3 B DC 18 ? ? 1.59 15 5 H61 A DA 5 ? ? O4 B DT 16 ? ? 1.60 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.83 108.30 2.53 0.30 N 2 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.54 108.30 4.24 0.30 N 3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.59 108.30 4.29 0.30 N 4 1 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.80 113.10 4.70 0.50 N 5 1 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.91 106.40 -2.49 0.40 N 6 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 113.30 108.30 5.00 0.30 N 7 1 N7 A DA 5 ? ? C8 A DA 5 ? ? N9 A DA 5 ? ? 117.85 113.80 4.05 0.50 N 8 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.40 108.30 2.10 0.30 N 9 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.54 108.30 2.24 0.30 N 10 1 N7 A DA 9 ? ? C8 A DA 9 ? ? N9 A DA 9 ? ? 117.80 113.80 4.00 0.50 N 11 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.81 108.30 2.51 0.30 N 12 1 N7 A DG 10 ? ? C8 A DG 10 ? ? N9 A DG 10 ? ? 117.83 113.10 4.73 0.50 N 13 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.83 108.30 2.53 0.30 N 14 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 112.52 108.30 4.22 0.30 N 15 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 112.60 108.30 4.30 0.30 N 16 1 N7 B DG 13 ? ? C8 B DG 13 ? ? N9 B DG 13 ? ? 117.76 113.10 4.66 0.50 N 17 1 C8 B DG 13 ? ? N9 B DG 13 ? ? C4 B DG 13 ? ? 103.88 106.40 -2.52 0.40 N 18 1 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 113.28 108.30 4.98 0.30 N 19 1 N7 B DA 15 ? ? C8 B DA 15 ? ? N9 B DA 15 ? ? 117.89 113.80 4.09 0.50 N 20 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.40 108.30 2.10 0.30 N 21 1 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 110.49 108.30 2.19 0.30 N 22 1 N7 B DA 19 ? ? C8 B DA 19 ? ? N9 B DA 19 ? ? 117.65 113.80 3.85 0.50 N 23 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 110.86 108.30 2.56 0.30 N 24 1 N7 B DG 20 ? ? C8 B DG 20 ? ? N9 B DG 20 ? ? 117.75 113.10 4.65 0.50 N 25 1 C8 B DG 20 ? ? N9 B DG 20 ? ? C4 B DG 20 ? ? 103.97 106.40 -2.43 0.40 N 26 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.76 108.30 2.46 0.30 N 27 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.32 108.30 4.02 0.30 N 28 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.74 108.30 4.44 0.30 N 29 2 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.56 113.10 4.46 0.50 N 30 2 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 112.63 108.30 4.33 0.30 N 31 2 N7 A DA 5 ? ? C8 A DA 5 ? ? N9 A DA 5 ? ? 117.85 113.80 4.05 0.50 N 32 2 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.49 108.30 2.19 0.30 N 33 2 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.73 108.30 2.43 0.30 N 34 2 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.75 108.30 2.45 0.30 N 35 2 N7 A DA 9 ? ? C8 A DA 9 ? ? N9 A DA 9 ? ? 117.57 113.80 3.77 0.50 N 36 2 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.21 108.30 2.91 0.30 N 37 2 N7 A DG 10 ? ? C8 A DG 10 ? ? N9 A DG 10 ? ? 117.63 113.10 4.53 0.50 N 38 2 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.79 108.30 2.49 0.30 N 39 2 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 112.31 108.30 4.01 0.30 N 40 2 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 112.82 108.30 4.52 0.30 N 41 2 N7 B DG 13 ? ? C8 B DG 13 ? ? N9 B DG 13 ? ? 117.72 113.10 4.62 0.50 N 42 2 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 112.70 108.30 4.40 0.30 N 43 2 N7 B DA 15 ? ? C8 B DA 15 ? ? N9 B DA 15 ? ? 117.93 113.80 4.13 0.50 N 44 2 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.34 108.30 2.04 0.30 N 45 2 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.64 108.30 2.34 0.30 N 46 2 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 110.70 108.30 2.40 0.30 N 47 2 N7 B DA 19 ? ? C8 B DA 19 ? ? N9 B DA 19 ? ? 117.57 113.80 3.77 0.50 N 48 2 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 111.08 108.30 2.78 0.30 N 49 2 N7 B DG 20 ? ? C8 B DG 20 ? ? N9 B DG 20 ? ? 117.57 113.10 4.47 0.50 N 50 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.30 108.30 4.00 0.30 N 51 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.83 108.30 4.53 0.30 N 52 3 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.74 113.10 4.64 0.50 N 53 3 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.96 106.40 -2.44 0.40 N 54 3 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 113.29 108.30 4.99 0.30 N 55 3 N7 A DA 5 ? ? C8 A DA 5 ? ? N9 A DA 5 ? ? 117.89 113.80 4.09 0.50 N 56 3 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.41 108.30 2.11 0.30 N 57 3 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.76 108.30 2.46 0.30 N 58 3 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.16 108.30 1.86 0.30 N 59 3 N7 A DA 9 ? ? C8 A DA 9 ? ? N9 A DA 9 ? ? 117.56 113.80 3.76 0.50 N 60 3 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.46 108.30 3.16 0.30 N 61 3 N7 A DG 10 ? ? C8 A DG 10 ? ? N9 A DG 10 ? ? 117.63 113.10 4.53 0.50 N 62 3 C8 A DG 10 ? ? N9 A DG 10 ? ? C4 A DG 10 ? ? 103.97 106.40 -2.43 0.40 N 63 3 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 112.30 108.30 4.00 0.30 N 64 3 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 112.74 108.30 4.44 0.30 N 65 3 N7 B DG 13 ? ? C8 B DG 13 ? ? N9 B DG 13 ? ? 117.70 113.10 4.60 0.50 N 66 3 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 113.30 108.30 5.00 0.30 N 67 3 N7 B DA 15 ? ? C8 B DA 15 ? ? N9 B DA 15 ? ? 117.83 113.80 4.03 0.50 N 68 3 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.31 108.30 2.01 0.30 N 69 3 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.83 108.30 2.53 0.30 N 70 3 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 110.14 108.30 1.84 0.30 N 71 3 N7 B DA 19 ? ? C8 B DA 19 ? ? N9 B DA 19 ? ? 117.47 113.80 3.67 0.50 N 72 3 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 111.34 108.30 3.04 0.30 N 73 3 N7 B DG 20 ? ? C8 B DG 20 ? ? N9 B DG 20 ? ? 117.52 113.10 4.42 0.50 N 74 3 C8 B DG 20 ? ? N9 B DG 20 ? ? C4 B DG 20 ? ? 103.99 106.40 -2.41 0.40 N 75 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.35 108.30 2.05 0.30 N 76 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.35 108.30 4.05 0.30 N 77 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.01 108.30 4.71 0.30 N 78 4 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.84 113.10 4.74 0.50 N 79 4 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.77 106.40 -2.63 0.40 N 80 4 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 113.00 108.30 4.70 0.30 N 81 4 N7 A DA 5 ? ? C8 A DA 5 ? ? N9 A DA 5 ? ? 117.74 113.80 3.94 0.50 N 82 4 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.33 108.30 2.03 0.30 N 83 4 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.74 108.30 2.44 0.30 N 84 4 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.71 108.30 2.41 0.30 N 85 4 N7 A DA 9 ? ? C8 A DA 9 ? ? N9 A DA 9 ? ? 117.68 113.80 3.88 0.50 N 86 4 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.34 108.30 3.04 0.30 N 87 4 N7 A DG 10 ? ? C8 A DG 10 ? ? N9 A DG 10 ? ? 117.74 113.10 4.64 0.50 N 88 4 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.32 108.30 2.02 0.30 N 89 4 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 112.31 108.30 4.01 0.30 N 90 4 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 112.91 108.30 4.61 0.30 N 91 4 N7 B DG 13 ? ? C8 B DG 13 ? ? N9 B DG 13 ? ? 117.92 113.10 4.82 0.50 N 92 4 C8 B DG 13 ? ? N9 B DG 13 ? ? C4 B DG 13 ? ? 103.73 106.40 -2.67 0.40 N 93 4 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 112.97 108.30 4.67 0.30 N 94 4 N7 B DA 15 ? ? C8 B DA 15 ? ? N9 B DA 15 ? ? 117.72 113.80 3.92 0.50 N 95 4 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.24 108.30 1.94 0.30 N 96 4 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.81 108.30 2.51 0.30 N 97 4 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 110.63 108.30 2.33 0.30 N 98 4 N7 B DA 19 ? ? C8 B DA 19 ? ? N9 B DA 19 ? ? 117.63 113.80 3.83 0.50 N 99 4 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 111.22 108.30 2.92 0.30 N 100 4 N7 B DG 20 ? ? C8 B DG 20 ? ? N9 B DG 20 ? ? 117.75 113.10 4.65 0.50 N 101 4 C8 B DG 20 ? ? N9 B DG 20 ? ? C4 B DG 20 ? ? 103.91 106.40 -2.49 0.40 N 102 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.14 108.30 1.84 0.30 N 103 5 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.37 108.30 4.07 0.30 N 104 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.54 108.30 4.24 0.30 N 105 5 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.73 113.10 4.63 0.50 N 106 5 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.95 106.40 -2.45 0.40 N 107 5 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 112.44 108.30 4.14 0.30 N 108 5 N7 A DA 5 ? ? C8 A DA 5 ? ? N9 A DA 5 ? ? 117.91 113.80 4.11 0.50 N 109 5 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.61 108.30 2.31 0.30 N 110 5 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.28 108.30 2.98 0.30 N 111 5 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.51 108.30 2.21 0.30 N 112 5 N7 A DA 9 ? ? C8 A DA 9 ? ? N9 A DA 9 ? ? 117.63 113.80 3.83 0.50 N 113 5 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.86 108.30 2.56 0.30 N 114 5 N7 A DG 10 ? ? C8 A DG 10 ? ? N9 A DG 10 ? ? 117.71 113.10 4.61 0.50 N 115 5 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.14 108.30 1.84 0.30 N 116 5 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 112.49 108.30 4.19 0.30 N 117 5 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 112.45 108.30 4.15 0.30 N 118 5 N7 B DG 13 ? ? C8 B DG 13 ? ? N9 B DG 13 ? ? 117.69 113.10 4.59 0.50 N 119 5 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 112.54 108.30 4.24 0.30 N 120 5 N7 B DA 15 ? ? C8 B DA 15 ? ? N9 B DA 15 ? ? 117.91 113.80 4.11 0.50 N 121 5 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.58 108.30 2.28 0.30 N 122 5 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.28 108.30 2.98 0.30 N 123 5 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 110.46 108.30 2.16 0.30 N 124 5 N7 B DA 19 ? ? C8 B DA 19 ? ? N9 B DA 19 ? ? 117.54 113.80 3.74 0.50 N 125 5 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 110.82 108.30 2.52 0.30 N 126 5 N7 B DG 20 ? ? C8 B DG 20 ? ? N9 B DG 20 ? ? 117.68 113.10 4.58 0.50 N 127 5 C8 B DG 20 ? ? N9 B DG 20 ? ? C4 B DG 20 ? ? 103.97 106.40 -2.43 0.40 N 128 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.92 108.30 3.62 0.30 N 129 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.19 108.30 3.89 0.30 N 130 6 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.59 113.10 4.49 0.50 N 131 6 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.99 106.40 -2.41 0.40 N 132 6 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.50 108.30 3.20 0.30 N 133 6 N7 A DA 5 ? ? C8 A DA 5 ? ? N9 A DA 5 ? ? 117.97 113.80 4.17 0.50 N 134 6 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.54 108.30 2.24 0.30 N 135 6 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.21 108.30 1.91 0.30 N 136 6 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.78 108.30 2.48 0.30 N 137 6 N7 A DA 9 ? ? C8 A DA 9 ? ? N9 A DA 9 ? ? 117.61 113.80 3.81 0.50 N 138 6 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.60 108.30 3.30 0.30 N 139 6 N7 A DG 10 ? ? C8 A DG 10 ? ? N9 A DG 10 ? ? 117.74 113.10 4.64 0.50 N 140 6 C8 A DG 10 ? ? N9 A DG 10 ? ? C4 A DG 10 ? ? 103.99 106.40 -2.41 0.40 N 141 6 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 111.93 108.30 3.63 0.30 N 142 6 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 112.16 108.30 3.86 0.30 N 143 6 N7 B DG 13 ? ? C8 B DG 13 ? ? N9 B DG 13 ? ? 117.56 113.10 4.46 0.50 N 144 6 C8 B DG 13 ? ? N9 B DG 13 ? ? C4 B DG 13 ? ? 104.00 106.40 -2.40 0.40 N 145 6 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 111.40 108.30 3.10 0.30 N 146 6 N7 B DA 15 ? ? C8 B DA 15 ? ? N9 B DA 15 ? ? 118.05 113.80 4.25 0.50 N 147 6 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.49 108.30 2.19 0.30 N 148 6 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.22 108.30 1.92 0.30 N 149 6 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 110.74 108.30 2.44 0.30 N 150 6 N7 B DA 19 ? ? C8 B DA 19 ? ? N9 B DA 19 ? ? 117.59 113.80 3.79 0.50 N 151 6 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 111.54 108.30 3.24 0.30 N 152 6 N7 B DG 20 ? ? C8 B DG 20 ? ? N9 B DG 20 ? ? 117.65 113.10 4.55 0.50 N 153 6 C8 B DG 20 ? ? N9 B DG 20 ? ? C4 B DG 20 ? ? 103.90 106.40 -2.50 0.40 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1AC9 'double helix' 1AC9 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.555 -0.423 -0.035 -7.599 -1.812 -2.074 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DT 2 1_555 B DA 9 1_555 -0.225 -0.255 -0.277 2.741 -10.765 -1.837 2 A_DT2:DA19_B A 2 ? B 19 ? 20 1 1 A DG 3 1_555 B DC 8 1_555 -0.378 -0.406 -0.271 4.033 -11.196 2.683 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A LGP 4 1_555 B DC 7 1_555 -0.446 -0.432 -0.452 -2.441 -10.780 0.054 4 A_LGP4:DC17_B A 4 ? B 17 ? 19 1 1 A DA 5 1_555 B DT 6 1_555 0.096 -0.302 0.134 -5.830 -10.149 -13.645 5 A_DA5:DT16_B A 5 ? B 16 ? 20 1 1 A DT 6 1_555 B DA 5 1_555 -0.118 -0.295 0.133 5.893 -10.139 -13.623 6 A_DT6:DA15_B A 6 ? B 15 ? 20 1 1 A DC 7 1_555 B LGP 4 1_555 0.432 -0.413 -0.456 2.488 -10.797 0.078 7 A_DC7:LGP14_B A 7 ? B 14 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 0.374 -0.385 -0.276 -3.960 -11.235 2.704 8 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DA 9 1_555 B DT 2 1_555 0.236 -0.235 -0.278 -2.659 -10.795 -1.816 9 A_DA9:DT12_B A 9 ? B 12 ? 20 1 1 A DG 10 1_555 B DC 1 1_555 -0.533 -0.406 -0.030 7.582 -1.896 -2.011 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DT 2 1_555 B DA 9 1_555 0.145 -0.628 2.883 4.242 8.298 25.572 -3.122 0.605 2.548 18.002 -9.204 27.191 1 AA_DC1DT2:DA19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DT 2 1_555 B DA 9 1_555 A DG 3 1_555 B DC 8 1_555 0.176 -0.963 3.057 -0.863 16.616 32.493 -3.552 -0.386 2.306 27.558 1.432 36.403 2 AA_DT2DG3:DC18DA19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A LGP 4 1_555 B DC 7 1_555 1.202 -0.388 3.506 1.802 3.550 29.291 -1.572 -1.944 3.501 6.980 -3.544 29.554 3 AA_DG3LGP4:DC17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A LGP 4 1_555 B DC 7 1_555 A DA 5 1_555 B DT 6 1_555 -0.614 0.016 3.136 -9.300 -4.562 39.143 0.525 -0.136 3.173 -6.669 13.594 40.439 4 AA_LGP4DA5:DT16DC17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DA 5 1_555 B DT 6 1_555 A DT 6 1_555 B DA 5 1_555 0.000 -0.840 3.039 0.009 -1.289 35.975 -1.189 0.001 3.067 -2.087 -0.015 35.998 5 AA_DA5DT6:DA15DT16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DT 6 1_555 B DA 5 1_555 A DC 7 1_555 B LGP 4 1_555 0.613 0.017 3.136 9.312 -4.560 39.144 0.527 0.138 3.173 -6.665 -13.610 40.442 6 AA_DT6DC7:LGP14DA15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DC 7 1_555 B LGP 4 1_555 A DC 8 1_555 B DG 3 1_555 -1.200 -0.388 3.506 -1.779 3.517 29.263 -1.565 1.948 3.502 6.922 3.500 29.521 7 AA_DC7DC8:DG13LGP14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DA 9 1_555 B DT 2 1_555 -0.175 -0.961 3.056 0.844 16.707 32.519 -3.550 0.382 2.303 27.670 -1.398 36.466 8 AA_DC8DA9:DT12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DA 9 1_555 B DT 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.145 -0.627 2.886 -4.265 8.255 25.605 -3.109 -0.609 2.554 17.892 9.244 27.212 9 AA_DA9DG10:DC11DT12_BB A 9 ? B 12 ? A 10 ? B 11 ? #