data_1ADX # _entry.id 1ADX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ADX pdb_00001adx 10.2210/pdb1adx/pdb WWPDB D_1000170698 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2ADX _pdbx_database_related.details . _pdbx_database_related.content_type 'representative structure' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ADX _pdbx_database_status.recvd_initial_deposition_date 1997-02-18 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sampoli-Benitez, B.A.' 1 'Hunter, M.J.' 2 'Meininger, D.P.' 3 'Komives, E.A.' 4 # _citation.id primary _citation.title 'Structure of the fifth EGF-like domain of thrombomodulin: An EGF-like domain with a novel disulfide-bonding pattern.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 273 _citation.page_first 913 _citation.page_last 926 _citation.year 1997 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9367781 _citation.pdbx_database_id_DOI 10.1006/jmbi.1997.1356 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sampoli Benitez, B.A.' 1 ? primary 'Hunter, M.J.' 2 ? primary 'Meininger, D.P.' 3 ? primary 'Komives, E.A.' 4 ? # _cell.entry_id 1ADX _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ADX _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description THROMBOMODULIN _entity.formula_weight 4377.751 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'FIFTH EGF-LIKE DOMAIN' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name TMEGF5 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code QMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDE _entity_poly.pdbx_seq_one_letter_code_can QMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDE _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 MET n 1 3 PHE n 1 4 CYS n 1 5 ASN n 1 6 GLN n 1 7 THR n 1 8 ALA n 1 9 CYS n 1 10 PRO n 1 11 ALA n 1 12 ASP n 1 13 CYS n 1 14 ASP n 1 15 PRO n 1 16 ASN n 1 17 THR n 1 18 GLN n 1 19 ALA n 1 20 SER n 1 21 CYS n 1 22 GLU n 1 23 CYS n 1 24 PRO n 1 25 GLU n 1 26 GLY n 1 27 TYR n 1 28 ILE n 1 29 LEU n 1 30 ASP n 1 31 ASP n 1 32 GLY n 1 33 PHE n 1 34 ILE n 1 35 CYS n 1 36 THR n 1 37 ASP n 1 38 ILE n 1 39 ASP n 1 40 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ BLOOD _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TRBM_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P07204 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MLGVLVLGALALAGLGFPAPAEPQPGGSQCVEHDCFALYPGPATFLNASQICDGLRGHLMTVRSSVAADVISLLLNGDGG VGRRRLWIGLQLPPGCGDPKRLGPLRGFQWVTGDNNTSYSRWARLDLNGAPLCGPLCVAVSAAEATVPSEPIWEEQQCEV KADGFLCEFHFPATCRPLAVEPGAAAAAVSITYGTPFAARGADFQALPVGSSAAVAPLGLQLMCTAPPGAVQGHWAREAP GAWDCSVENGGCEHACNAIPGAPRCQCPAGAALQADGRSCTASATQSCNDLCEHFCVPNPDQPGSYSCMCETGYRLAADQ HRCEDVDDCILEPSPCPQRCVNTQGGFECHCYPNYDLVDGECVEPVDPCFRANCEYQCQPLNQTSYLCVCAEGFAPIPHE PHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALARHIGTDC DSGKVDGGDSGSGEPPPSPTPGSTLTPPAVGLVHSGLLIGISIASLCLVVALLALLCHLRKKQGAARAKMEYKCAAPSKE VVLQHVRTERTPQRL ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ADX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 40 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P07204 _struct_ref_seq.db_align_beg 405 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 444 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 40 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 TOCSY 1 2 1 'NOESY DQF-COSY' 1 3 1 E-COSY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 5.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 AMX500 Bruker 500 2 DRX600 Bruker 600 # _pdbx_nmr_refine.entry_id 1ADX _pdbx_nmr_refine.method 'DISTANCE GEOMETRY AND SIMULATED ANNEALING' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL REFERENCE ABOVE.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1ADX _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 14 _pdbx_nmr_ensemble.conformer_selection_criteria 'LOWEST ENERGY' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' DGII ? ? 2 'structure solution' X-PLOR ? ? 3 # _exptl.entry_id 1ADX _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1ADX _struct.title 'FIFTH EGF-LIKE DOMAIN OF THROMBOMODULIN (TMEGF5), NMR, 14 STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ADX _struct_keywords.pdbx_keywords 'BLOOD COAGULATION' _struct_keywords.text 'BLOOD COAGULATION, ANTICOAGULANT, FIBRINOGEN, PEPTIDE SYNTHESIS, PROTEIN C, THROMBIN, DISULFIDE BONDS' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag Y _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 9 SG ? ? A CYS 4 A CYS 9 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf2 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 21 SG ? ? A CYS 13 A CYS 21 1_555 ? ? ? ? ? ? ? 2.020 ? ? disulf3 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 35 SG ? ? A CYS 23 A CYS 35 1_555 ? ? ? ? ? ? ? 2.020 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1ADX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ADX _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN A . n A 1 2 MET 2 2 2 MET MET A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 CYS 35 35 35 CYS CYS A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 GLU 40 40 40 GLU GLU A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-12-24 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 2 C A CYS 9 ? ? N A PRO 10 ? ? CD A PRO 10 ? ? 101.94 128.40 -26.46 2.10 Y 2 2 C A CYS 23 ? ? N A PRO 24 ? ? CD A PRO 24 ? ? 107.22 128.40 -21.18 2.10 Y 3 3 C A CYS 23 ? ? N A PRO 24 ? ? CD A PRO 24 ? ? 109.15 128.40 -19.25 2.10 Y 4 4 C A CYS 23 ? ? N A PRO 24 ? ? CD A PRO 24 ? ? 105.04 128.40 -23.36 2.10 Y 5 5 C A CYS 9 ? ? N A PRO 10 ? ? CD A PRO 10 ? ? 106.30 128.40 -22.10 2.10 Y 6 6 C A CYS 23 ? ? N A PRO 24 ? ? CD A PRO 24 ? ? 109.21 128.40 -19.19 2.10 Y 7 8 C A CYS 9 ? ? N A PRO 10 ? ? CD A PRO 10 ? ? 102.26 128.40 -26.14 2.10 Y 8 8 C A CYS 23 ? ? N A PRO 24 ? ? CD A PRO 24 ? ? 107.37 128.40 -21.03 2.10 Y 9 10 C A CYS 23 ? ? N A PRO 24 ? ? CD A PRO 24 ? ? 108.65 128.40 -19.75 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 3 ? ? 178.85 29.48 2 1 CYS A 4 ? ? 41.43 -159.80 3 1 GLN A 6 ? ? 86.08 41.44 4 1 THR A 7 ? ? 82.21 -40.11 5 1 ALA A 8 ? ? -174.64 130.87 6 1 PRO A 10 ? ? -66.28 -159.89 7 1 ASP A 12 ? ? -60.34 90.41 8 1 CYS A 13 ? ? -59.20 90.12 9 1 GLN A 18 ? ? -41.82 96.88 10 1 ALA A 19 ? ? -175.14 29.59 11 1 CYS A 23 ? ? 51.69 149.46 12 1 PRO A 24 ? ? -53.26 -164.64 13 1 GLU A 25 ? ? -54.22 90.03 14 1 ILE A 28 ? ? 79.85 117.39 15 1 LEU A 29 ? ? -53.99 -165.42 16 1 PHE A 33 ? ? 44.88 26.20 17 1 ILE A 38 ? ? -134.84 -38.32 18 1 ASP A 39 ? ? -167.26 -89.52 19 2 MET A 2 ? ? 61.55 121.11 20 2 CYS A 4 ? ? 68.42 163.50 21 2 GLN A 6 ? ? 86.41 110.34 22 2 THR A 7 ? ? 31.42 -88.90 23 2 CYS A 9 ? ? -157.97 -122.51 24 2 ALA A 11 ? ? 66.57 100.70 25 2 THR A 17 ? ? 178.65 53.49 26 2 GLN A 18 ? ? -62.47 -164.40 27 2 CYS A 23 ? ? 14.69 104.43 28 2 PRO A 24 ? ? 23.24 135.01 29 2 GLU A 25 ? ? -56.62 92.76 30 2 ILE A 28 ? ? 98.45 113.30 31 2 LEU A 29 ? ? -60.97 -154.45 32 2 ASP A 30 ? ? 101.50 173.86 33 2 PHE A 33 ? ? 54.96 19.09 34 2 THR A 36 ? ? 160.49 176.95 35 2 ASP A 37 ? ? 171.03 40.61 36 2 ILE A 38 ? ? -159.92 29.37 37 2 ASP A 39 ? ? 171.91 67.08 38 3 PHE A 3 ? ? -106.46 53.71 39 3 CYS A 4 ? ? 63.77 158.89 40 3 GLN A 6 ? ? -109.76 -163.95 41 3 CYS A 9 ? ? 175.07 166.54 42 3 PRO A 10 ? ? -53.79 -160.61 43 3 CYS A 13 ? ? -43.07 94.32 44 3 THR A 17 ? ? 168.94 87.32 45 3 CYS A 23 ? ? -1.25 118.76 46 3 PRO A 24 ? ? 4.08 64.77 47 3 GLU A 25 ? ? 24.05 96.14 48 3 ILE A 28 ? ? 51.75 153.40 49 3 PHE A 33 ? ? 44.89 26.66 50 3 ASP A 37 ? ? 160.83 90.87 51 4 PHE A 3 ? ? -45.13 92.75 52 4 CYS A 4 ? ? 37.86 -158.11 53 4 ASN A 5 ? ? -95.59 -141.61 54 4 ALA A 8 ? ? 66.96 156.25 55 4 ALA A 11 ? ? 74.18 -138.46 56 4 ASP A 12 ? ? 87.33 109.51 57 4 THR A 17 ? ? -159.59 62.39 58 4 CYS A 21 ? ? 41.32 -174.55 59 4 GLU A 22 ? ? 42.18 29.93 60 4 CYS A 23 ? ? -25.63 104.08 61 4 PRO A 24 ? ? 32.52 -162.21 62 4 GLU A 25 ? ? -102.78 69.05 63 4 ILE A 28 ? ? 69.26 109.29 64 4 LEU A 29 ? ? -51.16 -171.17 65 4 ASP A 30 ? ? 152.76 179.68 66 4 ASP A 31 ? ? 57.57 15.49 67 4 PHE A 33 ? ? 45.09 23.71 68 4 THR A 36 ? ? 90.10 129.94 69 4 ILE A 38 ? ? 27.83 85.02 70 5 ASN A 5 ? ? 59.91 -86.45 71 5 THR A 7 ? ? 34.80 -84.92 72 5 ALA A 8 ? ? -163.37 82.60 73 5 CYS A 9 ? ? -66.84 -162.42 74 5 ALA A 11 ? ? 64.31 84.02 75 5 CYS A 13 ? ? 36.90 72.84 76 5 THR A 17 ? ? 178.09 79.05 77 5 CYS A 21 ? ? 46.50 -171.93 78 5 CYS A 23 ? ? -18.70 141.53 79 5 PRO A 24 ? ? -34.33 156.89 80 5 GLU A 25 ? ? -64.64 87.49 81 5 ILE A 28 ? ? 64.28 116.26 82 5 LEU A 29 ? ? -55.36 -165.17 83 5 ASP A 31 ? ? -43.82 107.89 84 5 THR A 36 ? ? 170.30 176.08 85 5 ASP A 37 ? ? -139.13 -32.56 86 6 PHE A 3 ? ? -105.78 57.70 87 6 CYS A 4 ? ? 35.57 101.49 88 6 ASN A 5 ? ? 37.78 60.02 89 6 GLN A 6 ? ? 38.07 -93.31 90 6 ALA A 8 ? ? 174.25 -177.33 91 6 CYS A 9 ? ? 164.13 159.67 92 6 PRO A 10 ? ? -49.75 -143.45 93 6 ALA A 11 ? ? -155.77 48.66 94 6 CYS A 13 ? ? -63.20 88.43 95 6 THR A 17 ? ? -153.28 55.54 96 6 SER A 20 ? ? 165.64 -113.12 97 6 CYS A 21 ? ? -55.38 -163.94 98 6 CYS A 23 ? ? -5.27 112.32 99 6 PRO A 24 ? ? 8.32 -134.17 100 6 ILE A 28 ? ? 79.52 107.60 101 6 LEU A 29 ? ? -50.80 -176.12 102 6 ASP A 30 ? ? 160.54 161.05 103 6 ASP A 31 ? ? 76.63 -1.93 104 6 PHE A 33 ? ? 58.38 13.44 105 6 THR A 36 ? ? 162.80 177.45 106 6 ASP A 37 ? ? -158.64 -59.21 107 7 MET A 2 ? ? -150.80 26.14 108 7 PHE A 3 ? ? 36.14 80.65 109 7 CYS A 4 ? ? 50.55 -176.49 110 7 ASN A 5 ? ? -108.19 -86.34 111 7 GLN A 6 ? ? -52.21 -168.70 112 7 THR A 7 ? ? -38.76 -30.18 113 7 ALA A 8 ? ? 172.14 136.75 114 7 PRO A 10 ? ? -76.18 -161.45 115 7 ALA A 11 ? ? -117.09 58.37 116 7 THR A 17 ? ? -140.57 57.49 117 7 GLN A 18 ? ? -63.12 93.64 118 7 ALA A 19 ? ? -154.89 17.71 119 7 CYS A 23 ? ? 52.64 131.54 120 7 PRO A 24 ? ? -40.11 99.15 121 7 GLU A 25 ? ? 40.76 83.26 122 7 TYR A 27 ? ? -39.20 -36.18 123 7 ILE A 28 ? ? 87.58 112.95 124 7 LEU A 29 ? ? -54.47 -179.44 125 7 ASP A 30 ? ? 155.74 174.53 126 7 PHE A 33 ? ? 56.80 13.83 127 7 THR A 36 ? ? -46.30 174.25 128 7 ASP A 37 ? ? -134.79 -62.33 129 7 ILE A 38 ? ? -38.34 115.47 130 8 ASN A 5 ? ? 70.77 -7.44 131 8 GLN A 6 ? ? 168.98 73.01 132 8 THR A 7 ? ? 70.93 -81.17 133 8 CYS A 9 ? ? -176.13 -125.23 134 8 ALA A 11 ? ? 51.31 83.20 135 8 CYS A 13 ? ? 30.10 93.95 136 8 ASN A 16 ? ? -90.74 34.95 137 8 THR A 17 ? ? 176.55 79.95 138 8 SER A 20 ? ? -44.86 165.11 139 8 CYS A 21 ? ? 38.58 -165.92 140 8 GLU A 22 ? ? 41.42 29.62 141 8 CYS A 23 ? ? -7.52 103.92 142 8 PRO A 24 ? ? 19.53 -143.24 143 8 GLU A 25 ? ? -105.86 56.39 144 8 ILE A 28 ? ? 52.00 124.42 145 8 LEU A 29 ? ? -61.80 -166.34 146 8 ASP A 30 ? ? -165.45 -162.09 147 8 ASP A 31 ? ? -43.97 96.33 148 8 PHE A 33 ? ? -75.66 27.78 149 8 THR A 36 ? ? 174.16 176.29 150 8 ASP A 39 ? ? -110.82 50.71 151 9 MET A 2 ? ? -170.61 147.51 152 9 CYS A 4 ? ? 39.92 93.10 153 9 ASN A 5 ? ? 40.53 -88.11 154 9 GLN A 6 ? ? -176.13 134.43 155 9 THR A 7 ? ? 83.47 -43.65 156 9 ALA A 8 ? ? 162.05 128.34 157 9 PRO A 10 ? ? -61.62 -151.48 158 9 ALA A 11 ? ? -142.22 -140.34 159 9 ASP A 12 ? ? 93.07 9.93 160 9 CYS A 13 ? ? 40.59 102.97 161 9 ASP A 14 ? ? -52.15 -175.04 162 9 GLN A 18 ? ? 32.14 35.95 163 9 ALA A 19 ? ? -138.89 -156.62 164 9 CYS A 23 ? ? -12.88 143.10 165 9 PRO A 24 ? ? -36.90 163.18 166 9 ILE A 28 ? ? 58.61 126.33 167 9 LEU A 29 ? ? -54.03 -167.30 168 9 CYS A 35 ? ? -47.91 -86.30 169 9 THR A 36 ? ? 41.58 -166.44 170 9 ASP A 37 ? ? -154.83 -32.22 171 9 ASP A 39 ? ? -93.01 39.52 172 10 MET A 2 ? ? -164.11 -149.46 173 10 PHE A 3 ? ? -179.25 90.77 174 10 CYS A 4 ? ? -27.64 107.55 175 10 ASN A 5 ? ? -75.70 -139.83 176 10 GLN A 6 ? ? 39.17 36.01 177 10 THR A 7 ? ? 83.87 -42.88 178 10 ALA A 8 ? ? 178.61 169.70 179 10 PRO A 10 ? ? -53.78 -160.08 180 10 CYS A 13 ? ? 39.56 51.09 181 10 THR A 17 ? ? -167.05 73.45 182 10 GLN A 18 ? ? -40.19 -94.40 183 10 ALA A 19 ? ? 37.97 -155.31 184 10 SER A 20 ? ? 48.60 -123.40 185 10 CYS A 21 ? ? -39.44 157.01 186 10 PRO A 24 ? ? 2.30 116.95 187 10 GLU A 25 ? ? -44.12 97.11 188 10 ILE A 28 ? ? 47.22 173.11 189 10 LEU A 29 ? ? -77.41 -167.84 190 10 ASP A 31 ? ? -43.10 98.98 191 10 PHE A 33 ? ? 48.57 27.16 192 10 THR A 36 ? ? -56.88 -159.66 193 10 ASP A 37 ? ? -164.52 24.66 194 11 PHE A 3 ? ? -40.15 89.40 195 11 CYS A 4 ? ? 36.09 92.54 196 11 ASN A 5 ? ? -29.71 -83.65 197 11 GLN A 6 ? ? -42.46 169.20 198 11 ALA A 8 ? ? 178.37 103.81 199 11 PRO A 10 ? ? -63.97 -163.09 200 11 ASP A 12 ? ? -103.67 60.80 201 11 CYS A 13 ? ? -37.42 110.67 202 11 ASN A 16 ? ? -92.69 36.61 203 11 THR A 17 ? ? -177.11 77.37 204 11 GLN A 18 ? ? -93.54 39.14 205 11 SER A 20 ? ? -60.75 -117.38 206 11 CYS A 21 ? ? -47.55 173.55 207 11 PRO A 24 ? ? -18.03 139.48 208 11 GLU A 25 ? ? -63.08 89.50 209 11 TYR A 27 ? ? -55.15 -170.40 210 11 ILE A 28 ? ? 168.16 161.10 211 11 LEU A 29 ? ? -90.50 -133.85 212 11 ASP A 30 ? ? 152.81 91.47 213 11 ASP A 31 ? ? 44.05 26.30 214 11 THR A 36 ? ? 157.99 -49.21 215 11 ASP A 37 ? ? 75.64 124.89 216 12 MET A 2 ? ? 161.45 132.29 217 12 PHE A 3 ? ? 39.45 28.17 218 12 CYS A 4 ? ? 22.66 90.27 219 12 GLN A 6 ? ? 163.03 87.46 220 12 THR A 7 ? ? 44.94 27.72 221 12 ALA A 8 ? ? 73.18 171.38 222 12 CYS A 9 ? ? 176.54 144.53 223 12 PRO A 10 ? ? -44.62 -170.19 224 12 ASP A 12 ? ? -47.13 92.50 225 12 GLN A 18 ? ? -88.46 33.52 226 12 CYS A 21 ? ? -126.57 -159.44 227 12 CYS A 23 ? ? -17.66 140.22 228 12 PRO A 24 ? ? -34.58 155.84 229 12 GLU A 25 ? ? -64.54 87.14 230 12 ILE A 28 ? ? 72.15 108.81 231 12 LEU A 29 ? ? -61.89 -166.44 232 12 PHE A 33 ? ? 40.20 27.90 233 12 THR A 36 ? ? 163.03 172.58 234 12 ILE A 38 ? ? -140.17 24.83 235 13 MET A 2 ? ? 64.90 124.18 236 13 GLN A 6 ? ? 176.93 166.23 237 13 CYS A 9 ? ? 177.51 165.09 238 13 PRO A 10 ? ? -52.78 -162.30 239 13 CYS A 13 ? ? -49.16 151.87 240 13 THR A 17 ? ? -165.35 74.96 241 13 ALA A 19 ? ? -51.57 89.38 242 13 SER A 20 ? ? 154.75 154.37 243 13 CYS A 21 ? ? 43.17 -169.85 244 13 CYS A 23 ? ? -11.96 135.71 245 13 PRO A 24 ? ? -26.58 82.86 246 13 GLU A 25 ? ? 5.44 65.86 247 13 ILE A 28 ? ? 87.51 111.81 248 13 LEU A 29 ? ? -54.93 -176.19 249 13 ASP A 30 ? ? 158.96 164.96 250 13 CYS A 35 ? ? -49.57 -98.51 251 13 THR A 36 ? ? 43.47 -168.81 252 13 ASP A 37 ? ? -176.62 77.58 253 14 MET A 2 ? ? 72.60 -166.34 254 14 PHE A 3 ? ? -66.97 86.20 255 14 CYS A 4 ? ? -32.97 95.27 256 14 ASN A 5 ? ? -125.52 -158.58 257 14 GLN A 6 ? ? 62.48 -103.66 258 14 ALA A 8 ? ? 58.47 126.77 259 14 PRO A 10 ? ? -77.22 -158.45 260 14 ASP A 12 ? ? -107.29 48.24 261 14 CYS A 13 ? ? -41.87 106.67 262 14 THR A 17 ? ? -171.42 74.74 263 14 GLN A 18 ? ? -53.96 -107.37 264 14 ALA A 19 ? ? 41.42 -125.89 265 14 SER A 20 ? ? 42.56 -115.32 266 14 CYS A 21 ? ? -57.27 -160.13 267 14 GLU A 22 ? ? 39.85 32.42 268 14 CYS A 23 ? ? -3.86 125.96 269 14 PRO A 24 ? ? -24.27 85.90 270 14 GLU A 25 ? ? 5.48 67.00 271 14 ILE A 28 ? ? 68.05 104.97 272 14 LEU A 29 ? ? -57.98 -163.41 273 14 ASP A 31 ? ? -43.85 105.58 274 14 PHE A 33 ? ? 52.72 19.54 275 14 THR A 36 ? ? 178.72 177.91 276 14 ASP A 37 ? ? -169.38 -52.08 277 14 ASP A 39 ? ? 48.48 77.61 #