data_1AIO # _entry.id 1AIO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AIO pdb_00001aio 10.2210/pdb1aio/pdb RCSB DDLB73 ? ? WWPDB D_1000170864 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-04-24 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_conn_type 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.conn_type_id' 11 4 'Structure model' '_struct_conn.id' 12 4 'Structure model' '_struct_conn.pdbx_dist_value' 13 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 4 'Structure model' '_struct_conn_type.id' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 1997-05-15 _pdbx_database_PDB_obs_spr.pdb_id 1AIO _pdbx_database_PDB_obs_spr.replace_pdb_id 1GPG _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AIO _pdbx_database_status.recvd_initial_deposition_date 1997-04-23 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Takahara, P.M.' 1 'Rosenzweig, A.C.' 2 'Frederick, C.A.' 3 'Lippard, S.J.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structure of double-stranded DNA containing the major adduct of the anticancer drug cisplatin.' Nature 377 649 652 1995 NATUAS UK 0028-0836 0006 ? 7566180 10.1038/377649a0 1 'Crystal Structure of the Anticancer Drug Cisplatin Bound to Duplex DNA' J.Am.Chem.Soc. 118 12309 12321 1996 JACSAT US 0002-7863 0004 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Takahara, P.M.' 1 ? primary 'Rosenzweig, A.C.' 2 ? primary 'Frederick, C.A.' 3 ? primary 'Lippard, S.J.' 4 ? 1 'Takahara, P.M.' 5 ? 1 'Frederick, C.A.' 6 ? 1 'Lippard, S.J.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DNA (5'-D(*CP*CP*(BRU)P*CP*TP*[PT(NH3)2(GP*GP)]*TP*CP*TP*CP*C)-3') ; 3630.186 2 ? ? ? ? 2 polymer man ;DNA (5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3') ; 3761.468 2 ? ? ? ? 3 non-polymer syn Cisplatin 300.045 2 ? ? ? ? 4 water nat water 18.015 62 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DC)(BRU)(DC)(DT)(DG)(DG)(DT)(DC)(DT)(DC)(DC)' CCUCTGGTCTCC A,C ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DG)(DA)(DC)(DC)(DA)(DG)(DA)(DG)(DG)' GGAGACCAGAGG B,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 Cisplatin CPT 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 BRU n 1 4 DC n 1 5 DT n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DT n 1 11 DC n 1 12 DC n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DC n 2 7 DC n 2 8 DA n 2 9 DG n 2 10 DA n 2 11 DG n 2 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 CPT non-polymer . Cisplatin 'diammine(dichloro)platinum' 'Cl2 H6 N2 Pt' 300.045 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 BRU 3 3 3 BRU +U A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DG 6 6 6 DG +G A . n A 1 7 DG 7 7 7 DG +G A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DC 12 12 12 DC C A . n B 2 1 DG 1 13 13 DG G B . n B 2 2 DG 2 14 14 DG G B . n B 2 3 DA 3 15 15 DA A B . n B 2 4 DG 4 16 16 DG G B . n B 2 5 DA 5 17 17 DA A B . n B 2 6 DC 6 18 18 DC C B . n B 2 7 DC 7 19 19 DC C B . n B 2 8 DA 8 20 20 DA A B . n B 2 9 DG 9 21 21 DG G B . n B 2 10 DA 10 22 22 DA A B . n B 2 11 DG 11 23 23 DG G B . n B 2 12 DG 12 24 24 DG G B . n C 1 1 DC 1 25 25 DC C C . n C 1 2 DC 2 26 26 DC C C . n C 1 3 BRU 3 27 27 BRU +U C . n C 1 4 DC 4 28 28 DC C C . n C 1 5 DT 5 29 29 DT T C . n C 1 6 DG 6 30 30 DG +G C . n C 1 7 DG 7 31 31 DG +G C . n C 1 8 DT 8 32 32 DT T C . n C 1 9 DC 9 33 33 DC C C . n C 1 10 DT 10 34 34 DT T C . n C 1 11 DC 11 35 35 DC C C . n C 1 12 DC 12 36 36 DC C C . n D 2 1 DG 1 37 37 DG G D . n D 2 2 DG 2 38 38 DG G D . n D 2 3 DA 3 39 39 DA A D . n D 2 4 DG 4 40 40 DG G D . n D 2 5 DA 5 41 41 DA A D . n D 2 6 DC 6 42 42 DC C D . n D 2 7 DC 7 43 43 DC C D . n D 2 8 DA 8 44 44 DA A D . n D 2 9 DG 9 45 45 DG G D . n D 2 10 DA 10 46 46 DA A D . n D 2 11 DG 11 47 47 DG G D . n D 2 12 DG 12 48 48 DG G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CPT 1 49 49 CPT CPT A . F 3 CPT 1 50 50 CPT CPT C . G 4 HOH 1 54 54 HOH HOH A . G 4 HOH 2 55 55 HOH HOH A . G 4 HOH 3 58 58 HOH HOH A . G 4 HOH 4 60 60 HOH HOH A . G 4 HOH 5 62 62 HOH HOH A . G 4 HOH 6 66 66 HOH HOH A . G 4 HOH 7 68 68 HOH HOH A . G 4 HOH 8 80 80 HOH HOH A . G 4 HOH 9 85 85 HOH HOH A . G 4 HOH 10 86 86 HOH HOH A . G 4 HOH 11 89 89 HOH HOH A . G 4 HOH 12 91 91 HOH HOH A . G 4 HOH 13 93 93 HOH HOH A . G 4 HOH 14 97 97 HOH HOH A . G 4 HOH 15 99 99 HOH HOH A . G 4 HOH 16 111 111 HOH HOH A . H 4 HOH 1 51 51 HOH HOH B . H 4 HOH 2 52 52 HOH HOH B . H 4 HOH 3 53 53 HOH HOH B . H 4 HOH 4 56 56 HOH HOH B . H 4 HOH 5 59 59 HOH HOH B . H 4 HOH 6 61 61 HOH HOH B . H 4 HOH 7 63 63 HOH HOH B . H 4 HOH 8 69 69 HOH HOH B . H 4 HOH 9 76 76 HOH HOH B . H 4 HOH 10 79 79 HOH HOH B . H 4 HOH 11 82 82 HOH HOH B . H 4 HOH 12 83 83 HOH HOH B . H 4 HOH 13 84 84 HOH HOH B . H 4 HOH 14 87 87 HOH HOH B . H 4 HOH 15 90 90 HOH HOH B . H 4 HOH 16 92 92 HOH HOH B . H 4 HOH 17 94 94 HOH HOH B . H 4 HOH 18 100 100 HOH HOH B . H 4 HOH 19 107 107 HOH HOH B . H 4 HOH 20 110 110 HOH HOH B . I 4 HOH 1 67 67 HOH HOH C . I 4 HOH 2 72 72 HOH HOH C . I 4 HOH 3 73 73 HOH HOH C . I 4 HOH 4 75 75 HOH HOH C . I 4 HOH 5 78 78 HOH HOH C . I 4 HOH 6 81 81 HOH HOH C . I 4 HOH 7 98 98 HOH HOH C . I 4 HOH 8 103 103 HOH HOH C . I 4 HOH 9 104 104 HOH HOH C . I 4 HOH 10 106 106 HOH HOH C . I 4 HOH 11 109 109 HOH HOH C . I 4 HOH 12 112 112 HOH HOH C . J 4 HOH 1 57 57 HOH HOH D . J 4 HOH 2 64 64 HOH HOH D . J 4 HOH 3 65 65 HOH HOH D . J 4 HOH 4 70 70 HOH HOH D . J 4 HOH 5 71 71 HOH HOH D . J 4 HOH 6 74 74 HOH HOH D . J 4 HOH 7 77 77 HOH HOH D . J 4 HOH 8 88 88 HOH HOH D . J 4 HOH 9 95 95 HOH HOH D . J 4 HOH 10 96 96 HOH HOH D . J 4 HOH 11 101 101 HOH HOH D . J 4 HOH 12 102 102 HOH HOH D . J 4 HOH 13 105 105 HOH HOH D . J 4 HOH 14 108 108 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement 3.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _cell.entry_id 1AIO _cell.length_a 31.270 _cell.length_b 35.460 _cell.length_c 47.010 _cell.angle_alpha 79.81 _cell.angle_beta 84.75 _cell.angle_gamma 82.79 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AIO _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1AIO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 4 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 62.94 _exptl_crystal.density_Matthews 3.32 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 '[CO(NH3)6]CL3' ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 277.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1995-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AIO _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 8.000 _reflns.d_resolution_high 2.600 _reflns.number_obs 5797 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1AIO _refine.ls_number_reflns_obs 5797 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.600 _refine.ls_percent_reflns_obs 97.000 _refine.ls_R_factor_obs 0.206 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.206 _refine.ls_R_factor_R_free 0.251 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.00 _refine.ls_number_reflns_R_free 579 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 972 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 62 _refine_hist.number_atoms_total 1040 _refine_hist.d_res_high 2.600 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.10 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1AIO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1AIO _struct.title 'CRYSTAL STRUCTURE OF A DOUBLE-STRANDED DNA CONTAINING THE MAJOR ADDUCT OF THE ANTICANCER DRUG CISPLATIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AIO _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1AIO 1AIO ? ? ? 2 2 PDB 1AIO 1AIO ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AIO A 1 ? 12 ? 1AIO 1 ? 12 ? 1 12 2 2 1AIO B 1 ? 12 ? 1AIO 13 ? 24 ? 13 24 3 1 1AIO C 1 ? 12 ? 1AIO 25 ? 36 ? 25 36 4 2 1AIO D 1 ? 12 ? 1AIO 37 ? 48 ? 37 48 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,G,H 2 1 C,D,F,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 2 "O3'" ? ? ? 1_555 A BRU 3 P ? ? A DC 2 A BRU 3 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale2 covale both ? A BRU 3 "O3'" ? ? ? 1_555 A DC 4 P ? ? A BRU 3 A DC 4 1_555 ? ? ? ? ? ? ? 1.561 ? ? covale3 covale both ? C DC 2 "O3'" ? ? ? 1_555 C BRU 3 P ? ? C DC 26 C BRU 27 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale4 covale both ? C BRU 3 "O3'" ? ? ? 1_555 C DC 4 P ? ? C BRU 27 C DC 28 1_555 ? ? ? ? ? ? ? 1.562 ? ? metalc1 metalc ? ? A DG 6 N7 ? ? ? 1_555 E CPT . PT1 ? ? A DG 6 A CPT 49 1_555 ? ? ? ? ? ? ? 1.859 ? ? metalc2 metalc ? ? A DG 6 C8 ? ? ? 1_555 E CPT . PT1 ? ? A DG 6 A CPT 49 1_555 ? ? ? ? ? ? ? 2.712 ? ? metalc3 metalc ? ? A DG 6 C5 ? ? ? 1_555 E CPT . PT1 ? ? A DG 6 A CPT 49 1_555 ? ? ? ? ? ? ? 2.921 ? ? metalc4 metalc ? ? A DG 7 N7 ? ? ? 1_555 E CPT . PT1 ? ? A DG 7 A CPT 49 1_555 ? ? ? ? ? ? ? 1.925 ? ? metalc5 metalc ? ? A DG 7 C8 ? ? ? 1_555 E CPT . PT1 ? ? A DG 7 A CPT 49 1_555 ? ? ? ? ? ? ? 2.449 ? ? metalc6 metalc ? ? A DG 7 C5 ? ? ? 1_555 E CPT . PT1 ? ? A DG 7 A CPT 49 1_555 ? ? ? ? ? ? ? 3.264 ? ? metalc7 metalc ? ? C DG 6 N7 ? ? ? 1_555 F CPT . PT1 ? ? C DG 30 C CPT 50 1_555 ? ? ? ? ? ? ? 1.914 ? ? metalc8 metalc ? ? C DG 6 C8 ? ? ? 1_555 F CPT . PT1 ? ? C DG 30 C CPT 50 1_555 ? ? ? ? ? ? ? 2.711 ? ? metalc9 metalc ? ? C DG 6 C5 ? ? ? 1_555 F CPT . PT1 ? ? C DG 30 C CPT 50 1_555 ? ? ? ? ? ? ? 2.988 ? ? metalc10 metalc ? ? C DG 7 N7 ? ? ? 1_555 F CPT . PT1 ? ? C DG 31 C CPT 50 1_555 ? ? ? ? ? ? ? 1.901 ? ? metalc11 metalc ? ? C DG 7 C8 ? ? ? 1_555 F CPT . PT1 ? ? C DG 31 C CPT 50 1_555 ? ? ? ? ? ? ? 2.456 ? ? metalc12 metalc ? ? C DG 7 C5 ? ? ? 1_555 F CPT . PT1 ? ? C DG 31 C CPT 50 1_555 ? ? ? ? ? ? ? 3.190 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A BRU 3 N3 ? ? ? 1_555 B DA 10 N1 ? ? A BRU 3 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A BRU 3 O4 ? ? ? 1_555 B DA 10 N6 ? ? A BRU 3 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 12 N1 ? ? C DC 25 D DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 12 O6 ? ? C DC 25 D DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 12 N2 ? ? C DC 25 D DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 11 N1 ? ? C DC 26 D DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 11 O6 ? ? C DC 26 D DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 11 N2 ? ? C DC 26 D DG 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C BRU 3 N3 ? ? ? 1_555 D DA 10 N1 ? ? C BRU 27 D DA 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C BRU 3 O4 ? ? ? 1_555 D DA 10 N6 ? ? C BRU 27 D DA 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DC 4 N3 ? ? ? 1_555 D DG 9 N1 ? ? C DC 28 D DG 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DG 9 O6 ? ? C DC 28 D DG 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 28 D DG 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 8 N1 ? ? C DT 29 D DA 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 8 N6 ? ? C DT 29 D DA 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 30 D DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 30 D DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 30 D DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 31 D DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 31 D DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 31 D DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 32 D DA 41 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog52 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 33 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 33 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 33 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 34 D DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 34 D DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 35 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 35 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 35 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C DC 12 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 36 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C DC 12 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 36 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C DC 12 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 36 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N1 ? E CPT . ? A CPT 49 ? 1_555 83.2 ? 2 N7 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N2 ? E CPT . ? A CPT 49 ? 1_555 154.9 ? 3 N1 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N2 ? E CPT . ? A CPT 49 ? 1_555 98.5 ? 4 N7 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C8 ? A DG 6 ? A DG 6 ? 1_555 24.9 ? 5 N1 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C8 ? A DG 6 ? A DG 6 ? 1_555 83.0 ? 6 N2 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C8 ? A DG 6 ? A DG 6 ? 1_555 178.4 ? 7 N7 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C5 ? A DG 6 ? A DG 6 ? 1_555 23.3 ? 8 N1 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C5 ? A DG 6 ? A DG 6 ? 1_555 101.8 ? 9 N2 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C5 ? A DG 6 ? A DG 6 ? 1_555 135.8 ? 10 C8 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C5 ? A DG 6 ? A DG 6 ? 1_555 43.4 ? 11 N7 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 99.5 ? 12 N1 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 160.4 ? 13 N2 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 70.9 ? 14 C8 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 107.6 ? 15 C5 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 77.2 ? 16 N7 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C8 ? A DG 7 ? A DG 7 ? 1_555 83.9 ? 17 N1 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C8 ? A DG 7 ? A DG 7 ? 1_555 164.1 ? 18 N2 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C8 ? A DG 7 ? A DG 7 ? 1_555 97.1 ? 19 C8 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C8 ? A DG 7 ? A DG 7 ? 1_555 81.4 ? 20 C5 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C8 ? A DG 7 ? A DG 7 ? 1_555 68.4 ? 21 N7 ? A DG 7 ? A DG 7 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C8 ? A DG 7 ? A DG 7 ? 1_555 32.7 ? 22 N7 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C5 ? A DG 7 ? A DG 7 ? 1_555 94.4 ? 23 N1 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C5 ? A DG 7 ? A DG 7 ? 1_555 150.6 ? 24 N2 ? E CPT . ? A CPT 49 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C5 ? A DG 7 ? A DG 7 ? 1_555 71.8 ? 25 C8 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C5 ? A DG 7 ? A DG 7 ? 1_555 106.8 ? 26 C5 ? A DG 6 ? A DG 6 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C5 ? A DG 7 ? A DG 7 ? 1_555 71.3 ? 27 N7 ? A DG 7 ? A DG 7 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C5 ? A DG 7 ? A DG 7 ? 1_555 11.0 ? 28 C8 ? A DG 7 ? A DG 7 ? 1_555 PT1 ? E CPT . ? A CPT 49 ? 1_555 C5 ? A DG 7 ? A DG 7 ? 1_555 40.1 ? 29 N7 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 N1 ? F CPT . ? C CPT 50 ? 1_555 88.1 ? 30 N7 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 N2 ? F CPT . ? C CPT 50 ? 1_555 155.2 ? 31 N1 ? F CPT . ? C CPT 50 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 N2 ? F CPT . ? C CPT 50 ? 1_555 91.8 ? 32 N7 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C8 ? C DG 6 ? C DG 30 ? 1_555 25.5 ? 33 N1 ? F CPT . ? C CPT 50 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C8 ? C DG 6 ? C DG 30 ? 1_555 87.8 ? 34 N2 ? F CPT . ? C CPT 50 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C8 ? C DG 6 ? C DG 30 ? 1_555 179.2 ? 35 N7 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C5 ? C DG 6 ? C DG 30 ? 1_555 21.2 ? 36 N1 ? F CPT . ? C CPT 50 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C5 ? C DG 6 ? C DG 30 ? 1_555 104.2 ? 37 N2 ? F CPT . ? C CPT 50 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C5 ? C DG 6 ? C DG 30 ? 1_555 138.3 ? 38 C8 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C5 ? C DG 6 ? C DG 30 ? 1_555 42.5 ? 39 N7 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 N7 ? C DG 7 ? C DG 31 ? 1_555 99.9 ? 40 N1 ? F CPT . ? C CPT 50 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 N7 ? C DG 7 ? C DG 31 ? 1_555 157.1 ? 41 N2 ? F CPT . ? C CPT 50 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 N7 ? C DG 7 ? C DG 31 ? 1_555 72.0 ? 42 C8 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 N7 ? C DG 7 ? C DG 31 ? 1_555 108.6 ? 43 C5 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 N7 ? C DG 7 ? C DG 31 ? 1_555 79.8 ? 44 N7 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C8 ? C DG 7 ? C DG 31 ? 1_555 84.2 ? 45 N1 ? F CPT . ? C CPT 50 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C8 ? C DG 7 ? C DG 31 ? 1_555 169.5 ? 46 N2 ? F CPT . ? C CPT 50 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C8 ? C DG 7 ? C DG 31 ? 1_555 98.2 ? 47 C8 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C8 ? C DG 7 ? C DG 31 ? 1_555 82.2 ? 48 C5 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C8 ? C DG 7 ? C DG 31 ? 1_555 70.3 ? 49 N7 ? C DG 7 ? C DG 31 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C8 ? C DG 7 ? C DG 31 ? 1_555 32.6 ? 50 N7 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C5 ? C DG 7 ? C DG 31 ? 1_555 93.3 ? 51 N1 ? F CPT . ? C CPT 50 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C5 ? C DG 7 ? C DG 31 ? 1_555 146.2 ? 52 N2 ? F CPT . ? C CPT 50 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C5 ? C DG 7 ? C DG 31 ? 1_555 73.4 ? 53 C8 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C5 ? C DG 7 ? C DG 31 ? 1_555 107.3 ? 54 C5 ? C DG 6 ? C DG 30 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C5 ? C DG 7 ? C DG 31 ? 1_555 72.2 ? 55 N7 ? C DG 7 ? C DG 31 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C5 ? C DG 7 ? C DG 31 ? 1_555 13.8 ? 56 C8 ? C DG 7 ? C DG 31 ? 1_555 PT1 ? F CPT . ? C CPT 50 ? 1_555 C5 ? C DG 7 ? C DG 31 ? 1_555 41.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CPT 49 ? 3 'BINDING SITE FOR RESIDUE CPT A 49' AC2 Software C CPT 50 ? 3 'BINDING SITE FOR RESIDUE CPT C 50' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DT A 5 ? DT A 5 . ? 1_555 ? 2 AC1 3 DG A 6 ? DG A 6 . ? 1_555 ? 3 AC1 3 DG A 7 ? DG A 7 . ? 1_555 ? 4 AC2 3 DT C 5 ? DT C 29 . ? 1_555 ? 5 AC2 3 DG C 6 ? DG C 30 . ? 1_555 ? 6 AC2 3 DG C 7 ? DG C 31 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 54 ? ? O A HOH 85 ? ? 0.00 2 1 O A HOH 55 ? ? O A HOH 86 ? ? 0.00 3 1 O A HOH 58 ? ? O A HOH 89 ? ? 0.00 4 1 O A HOH 60 ? ? O A HOH 91 ? ? 0.00 5 1 O A HOH 62 ? ? O A HOH 93 ? ? 0.00 6 1 O A HOH 66 ? ? O A HOH 97 ? ? 0.00 7 1 O A HOH 68 ? ? O A HOH 99 ? ? 0.00 8 1 O A HOH 80 ? ? O A HOH 111 ? ? 0.00 9 1 O B HOH 51 ? ? O B HOH 82 ? ? 0.00 10 1 O B HOH 52 ? ? O B HOH 83 ? ? 0.00 11 1 O B HOH 53 ? ? O B HOH 84 ? ? 0.00 12 1 O B HOH 56 ? ? O B HOH 87 ? ? 0.00 13 1 O B HOH 59 ? ? O B HOH 90 ? ? 0.00 14 1 O B HOH 61 ? ? O B HOH 92 ? ? 0.00 15 1 O B HOH 63 ? ? O B HOH 94 ? ? 0.00 16 1 O B HOH 69 ? ? O B HOH 100 ? ? 0.00 17 1 O B HOH 76 ? ? O B HOH 107 ? ? 0.00 18 1 O B HOH 79 ? ? O B HOH 110 ? ? 0.00 19 1 O C HOH 67 ? ? O C HOH 98 ? ? 0.00 20 1 O C HOH 72 ? ? O C HOH 103 ? ? 0.00 21 1 O C HOH 73 ? ? O C HOH 104 ? ? 0.00 22 1 O C HOH 75 ? ? O C HOH 106 ? ? 0.00 23 1 O C HOH 78 ? ? O C HOH 109 ? ? 0.00 24 1 O C HOH 81 ? ? O C HOH 112 ? ? 0.00 25 1 O D HOH 57 ? ? O D HOH 88 ? ? 0.00 26 1 O D HOH 64 ? ? O D HOH 95 ? ? 0.00 27 1 O D HOH 65 ? ? O D HOH 96 ? ? 0.00 28 1 O D HOH 70 ? ? O D HOH 101 ? ? 0.00 29 1 O D HOH 71 ? ? O D HOH 102 ? ? 0.00 30 1 O D HOH 74 ? ? O D HOH 105 ? ? 0.00 31 1 O D HOH 77 ? ? O D HOH 108 ? ? 0.00 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? 1.555 1.512 0.043 0.007 N 2 1 N1 A DC 4 ? ? C6 A DC 4 ? ? 1.329 1.367 -0.038 0.006 N 3 1 N3 A DT 5 ? ? C4 A DT 5 ? ? 1.333 1.382 -0.049 0.008 N 4 1 "C5'" A DG 7 ? ? "C4'" A DG 7 ? ? 1.571 1.512 0.059 0.007 N 5 1 C8 A DG 7 ? ? N9 A DG 7 ? ? 1.425 1.374 0.051 0.007 N 6 1 "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? 1.455 1.516 -0.061 0.008 N 7 1 N3 A DT 10 ? ? C4 A DT 10 ? ? 1.333 1.382 -0.049 0.008 N 8 1 C6 A DT 10 ? ? N1 A DT 10 ? ? 1.333 1.378 -0.045 0.007 N 9 1 P A DC 11 ? ? "O5'" A DC 11 ? ? 1.673 1.593 0.080 0.010 N 10 1 "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 1.457 1.516 -0.059 0.008 N 11 1 "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 1.575 1.512 0.063 0.007 N 12 1 "O3'" B DG 16 ? ? "C3'" B DG 16 ? ? 1.383 1.419 -0.036 0.006 N 13 1 C6 B DG 16 ? ? N1 B DG 16 ? ? 1.343 1.391 -0.048 0.007 N 14 1 "C3'" B DC 18 ? ? "C2'" B DC 18 ? ? 1.467 1.516 -0.049 0.008 N 15 1 "C3'" B DC 19 ? ? "C2'" B DC 19 ? ? 1.456 1.516 -0.060 0.008 N 16 1 N1 B DC 19 ? ? C6 B DC 19 ? ? 1.324 1.367 -0.043 0.006 N 17 1 C4 B DA 22 ? ? C5 B DA 22 ? ? 1.335 1.383 -0.048 0.007 N 18 1 C5 B DA 22 ? ? N7 B DA 22 ? ? 1.351 1.388 -0.037 0.006 N 19 1 C8 B DA 22 ? ? N9 B DA 22 ? ? 1.321 1.373 -0.052 0.008 N 20 1 N9 B DA 22 ? ? C4 B DA 22 ? ? 1.337 1.374 -0.037 0.006 N 21 1 C6 B DG 23 ? ? N1 B DG 23 ? ? 1.347 1.391 -0.044 0.007 N 22 1 C6 B DG 24 ? ? N1 B DG 24 ? ? 1.340 1.391 -0.051 0.007 N 23 1 C8 B DG 24 ? ? N9 B DG 24 ? ? 1.325 1.374 -0.049 0.007 N 24 1 "C3'" C DT 29 ? ? "C2'" C DT 29 ? ? 1.449 1.516 -0.067 0.008 N 25 1 N1 C DG 30 ? ? C2 C DG 30 ? ? 1.322 1.373 -0.051 0.008 N 26 1 "C5'" C DG 31 ? ? "C4'" C DG 31 ? ? 1.573 1.512 0.061 0.007 N 27 1 "C4'" C DG 31 ? ? "C3'" C DG 31 ? ? 1.454 1.521 -0.067 0.010 N 28 1 C8 C DG 31 ? ? N9 C DG 31 ? ? 1.433 1.374 0.059 0.007 N 29 1 "C5'" C DT 32 ? ? "C4'" C DT 32 ? ? 1.570 1.512 0.058 0.007 N 30 1 "C5'" C DT 34 ? ? "C4'" C DT 34 ? ? 1.579 1.512 0.067 0.007 N 31 1 N3 C DT 34 ? ? C4 C DT 34 ? ? 1.333 1.382 -0.049 0.008 N 32 1 C5 C DT 34 ? ? C7 C DT 34 ? ? 1.536 1.496 0.040 0.006 N 33 1 P C DC 36 ? ? "O5'" C DC 36 ? ? 1.677 1.593 0.084 0.010 N 34 1 "C5'" D DG 37 ? ? "C4'" D DG 37 ? ? 1.569 1.512 0.057 0.007 N 35 1 "C5'" D DA 41 ? ? "C4'" D DA 41 ? ? 1.562 1.512 0.050 0.007 N 36 1 N1 D DC 43 ? ? C2 D DC 43 ? ? 1.332 1.397 -0.065 0.010 N 37 1 C6 D DA 44 ? ? N1 D DA 44 ? ? 1.299 1.351 -0.052 0.007 N 38 1 C6 D DG 48 ? ? N1 D DG 48 ? ? 1.343 1.391 -0.048 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.40 102.20 -4.80 0.70 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.24 108.30 1.94 0.30 N 3 1 "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? "C2'" A DC 4 ? ? 97.75 102.20 -4.45 0.70 N 4 1 "C4'" A DT 5 ? ? "C3'" A DT 5 ? ? "C2'" A DT 5 ? ? 93.84 102.20 -8.36 0.70 N 5 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? "C2'" A DT 5 ? ? 100.92 105.90 -4.98 0.80 N 6 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.31 108.30 2.01 0.30 N 7 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 115.35 111.50 3.85 0.50 N 8 1 C4 A DG 6 ? ? C5 A DG 6 ? ? N7 A DG 6 ? ? 113.85 110.80 3.05 0.40 N 9 1 C5 A DG 6 ? ? N7 A DG 6 ? ? C8 A DG 6 ? ? 100.82 104.30 -3.48 0.50 N 10 1 "O4'" A DG 7 ? ? "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? 101.89 104.50 -2.61 0.40 N 11 1 "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? "C2'" A DG 7 ? ? 97.05 102.20 -5.15 0.70 N 12 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.67 108.30 2.37 0.30 N 13 1 C4 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 113.42 110.80 2.62 0.40 N 14 1 C5 A DG 7 ? ? N7 A DG 7 ? ? C8 A DG 7 ? ? 99.53 104.30 -4.77 0.50 N 15 1 C8 A DG 7 ? ? N9 A DG 7 ? ? "C1'" A DG 7 ? ? 136.12 127.00 9.12 1.30 N 16 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 101.98 104.50 -2.52 0.40 N 17 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.45 122.90 -4.45 0.60 N 18 1 "O4'" A DT 10 ? ? "C4'" A DT 10 ? ? "C3'" A DT 10 ? ? 109.76 106.00 3.76 0.60 N 19 1 N1 A DT 10 ? ? C2 A DT 10 ? ? N3 A DT 10 ? ? 120.05 114.60 5.45 0.60 N 20 1 C4 A DT 10 ? ? C5 A DT 10 ? ? C6 A DT 10 ? ? 122.68 118.00 4.68 0.60 N 21 1 C5 A DT 10 ? ? C6 A DT 10 ? ? N1 A DT 10 ? ? 119.94 123.70 -3.76 0.60 N 22 1 N3 A DT 10 ? ? C2 A DT 10 ? ? O2 A DT 10 ? ? 117.71 122.30 -4.59 0.60 N 23 1 C5 A DT 10 ? ? C4 A DT 10 ? ? O4 A DT 10 ? ? 129.28 124.90 4.38 0.70 N 24 1 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.38 122.90 -4.52 0.60 N 25 1 "O4'" A DC 11 ? ? "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? 110.56 106.00 4.56 0.60 N 26 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? "C2'" A DC 11 ? ? 100.94 105.90 -4.96 0.80 N 27 1 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 123.26 118.90 4.36 0.60 N 28 1 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 116.40 121.90 -5.50 0.70 N 29 1 N9 B DG 13 ? ? C4 B DG 13 ? ? C5 B DG 13 ? ? 108.05 105.40 2.65 0.40 N 30 1 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 111.16 120.90 -9.74 1.60 N 31 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? "C2'" B DG 14 ? ? 99.80 105.90 -6.10 0.80 N 32 1 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 103.09 108.00 -4.91 0.70 N 33 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.45 108.30 2.15 0.30 N 34 1 N9 B DG 16 ? ? C4 B DG 16 ? ? C5 B DG 16 ? ? 107.85 105.40 2.45 0.40 N 35 1 N1 B DG 16 ? ? C6 B DG 16 ? ? O6 B DG 16 ? ? 114.51 119.90 -5.39 0.60 N 36 1 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 94.27 102.20 -7.93 0.70 N 37 1 "O4'" B DC 18 ? ? "C4'" B DC 18 ? ? "C3'" B DC 18 ? ? 101.57 104.50 -2.93 0.40 N 38 1 "O4'" B DC 19 ? ? "C4'" B DC 19 ? ? "C3'" B DC 19 ? ? 101.59 104.50 -2.91 0.40 N 39 1 N1 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 122.84 118.90 3.94 0.60 N 40 1 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.47 121.90 -5.43 0.70 N 41 1 "C4'" B DG 21 ? ? "C3'" B DG 21 ? ? "C2'" B DG 21 ? ? 96.16 102.20 -6.04 0.70 N 42 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 111.69 108.30 3.39 0.30 N 43 1 N9 B DG 21 ? ? C4 B DG 21 ? ? C5 B DG 21 ? ? 107.90 105.40 2.50 0.40 N 44 1 "O4'" B DG 23 ? ? "C4'" B DG 23 ? ? "C3'" B DG 23 ? ? 100.97 104.50 -3.53 0.40 N 45 1 "O4'" B DG 23 ? ? "C1'" B DG 23 ? ? N9 B DG 23 ? ? 111.42 108.30 3.12 0.30 N 46 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? "C2'" B DG 24 ? ? 101.03 105.90 -4.87 0.80 N 47 1 N1 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 114.97 119.90 -4.93 0.60 N 48 1 "C4'" C DC 25 ? ? "C3'" C DC 25 ? ? "C2'" C DC 25 ? ? 94.70 102.20 -7.50 0.70 N 49 1 N1 C DC 26 ? ? C2 C DC 26 ? ? O2 C DC 26 ? ? 122.58 118.90 3.68 0.60 N 50 1 "O4'" C DC 28 ? ? "C1'" C DC 28 ? ? "C2'" C DC 28 ? ? 100.45 105.90 -5.45 0.80 N 51 1 "O4'" C DC 28 ? ? "C1'" C DC 28 ? ? N1 C DC 28 ? ? 113.37 108.30 5.07 0.30 N 52 1 "C4'" C DT 29 ? ? "C3'" C DT 29 ? ? "C2'" C DT 29 ? ? 96.61 102.20 -5.59 0.70 N 53 1 "O4'" C DT 29 ? ? "C1'" C DT 29 ? ? N1 C DT 29 ? ? 111.02 108.30 2.72 0.30 N 54 1 "C4'" C DG 30 ? ? "C3'" C DG 30 ? ? "C2'" C DG 30 ? ? 96.10 102.20 -6.10 0.70 N 55 1 "O4'" C DG 30 ? ? "C1'" C DG 30 ? ? N9 C DG 30 ? ? 110.13 108.30 1.83 0.30 N 56 1 C5 C DG 30 ? ? C6 C DG 30 ? ? N1 C DG 30 ? ? 115.13 111.50 3.63 0.50 N 57 1 "O4'" C DG 31 ? ? "C4'" C DG 31 ? ? "C3'" C DG 31 ? ? 97.94 104.50 -6.56 0.40 N 58 1 "C4'" C DG 31 ? ? "C3'" C DG 31 ? ? "C2'" C DG 31 ? ? 97.96 102.20 -4.24 0.70 N 59 1 "O4'" C DG 31 ? ? "C1'" C DG 31 ? ? "C2'" C DG 31 ? ? 100.77 105.90 -5.13 0.80 N 60 1 "O4'" C DG 31 ? ? "C1'" C DG 31 ? ? N9 C DG 31 ? ? 111.16 108.30 2.86 0.30 N 61 1 C4 C DG 31 ? ? C5 C DG 31 ? ? C6 C DG 31 ? ? 114.86 118.80 -3.94 0.60 N 62 1 C5 C DG 31 ? ? C6 C DG 31 ? ? N1 C DG 31 ? ? 114.55 111.50 3.05 0.50 N 63 1 C5 C DG 31 ? ? N7 C DG 31 ? ? C8 C DG 31 ? ? 101.24 104.30 -3.06 0.50 N 64 1 N1 C DG 31 ? ? C6 C DG 31 ? ? O6 C DG 31 ? ? 115.59 119.90 -4.31 0.60 N 65 1 C8 C DG 31 ? ? N9 C DG 31 ? ? "C1'" C DG 31 ? ? 135.15 127.00 8.15 1.30 N 66 1 "C4'" C DT 32 ? ? "C3'" C DT 32 ? ? "C2'" C DT 32 ? ? 97.83 102.20 -4.37 0.70 N 67 1 "C3'" C DT 32 ? ? "C2'" C DT 32 ? ? "C1'" C DT 32 ? ? 110.21 102.50 7.71 1.20 N 68 1 C6 C DT 32 ? ? C5 C DT 32 ? ? C7 C DT 32 ? ? 119.28 122.90 -3.62 0.60 N 69 1 N1 C DT 34 ? ? C2 C DT 34 ? ? N3 C DT 34 ? ? 118.65 114.60 4.05 0.60 N 70 1 N3 C DT 34 ? ? C2 C DT 34 ? ? O2 C DT 34 ? ? 118.19 122.30 -4.11 0.60 N 71 1 "O4'" C DC 35 ? ? "C4'" C DC 35 ? ? "C3'" C DC 35 ? ? 109.71 106.00 3.71 0.60 N 72 1 P C DC 36 ? ? "O5'" C DC 36 ? ? "C5'" C DC 36 ? ? 107.94 120.90 -12.96 1.60 N 73 1 "O4'" D DG 38 ? ? "C1'" D DG 38 ? ? "C2'" D DG 38 ? ? 99.89 105.90 -6.01 0.80 N 74 1 C8 D DG 38 ? ? N9 D DG 38 ? ? C4 D DG 38 ? ? 104.00 106.40 -2.40 0.40 N 75 1 "O4'" D DG 40 ? ? "C1'" D DG 40 ? ? N9 D DG 40 ? ? 111.02 108.30 2.72 0.30 N 76 1 "C4'" D DA 41 ? ? "C3'" D DA 41 ? ? "C2'" D DA 41 ? ? 95.87 102.20 -6.33 0.70 N 77 1 "O4'" D DA 41 ? ? "C1'" D DA 41 ? ? N9 D DA 41 ? ? 110.23 108.30 1.93 0.30 N 78 1 "C4'" D DC 42 ? ? "C3'" D DC 42 ? ? "C2'" D DC 42 ? ? 96.92 102.20 -5.28 0.70 N 79 1 N1 D DC 42 ? ? C2 D DC 42 ? ? O2 D DC 42 ? ? 125.18 118.90 6.28 0.60 N 80 1 N3 D DC 42 ? ? C2 D DC 42 ? ? O2 D DC 42 ? ? 117.03 121.90 -4.87 0.70 N 81 1 "O4'" D DC 43 ? ? "C4'" D DC 43 ? ? "C3'" D DC 43 ? ? 101.65 104.50 -2.85 0.40 N 82 1 "C4'" D DA 44 ? ? "C3'" D DA 44 ? ? "C2'" D DA 44 ? ? 97.69 102.20 -4.51 0.70 N 83 1 "C4'" D DG 45 ? ? "C3'" D DG 45 ? ? "C2'" D DG 45 ? ? 95.71 102.20 -6.49 0.70 N 84 1 "O4'" D DG 45 ? ? "C1'" D DG 45 ? ? "C2'" D DG 45 ? ? 100.84 105.90 -5.06 0.80 N 85 1 N9 D DG 45 ? ? C4 D DG 45 ? ? C5 D DG 45 ? ? 108.07 105.40 2.67 0.40 N 86 1 "O4'" D DA 46 ? ? "C4'" D DA 46 ? ? "C3'" D DA 46 ? ? 101.19 104.50 -3.31 0.40 N 87 1 "O4'" D DG 47 ? ? "C4'" D DG 47 ? ? "C3'" D DG 47 ? ? 99.49 104.50 -5.01 0.40 N 88 1 "C4'" D DG 47 ? ? "C3'" D DG 47 ? ? "C2'" D DG 47 ? ? 96.88 102.20 -5.32 0.70 N 89 1 "O4'" D DG 47 ? ? "C1'" D DG 47 ? ? N9 D DG 47 ? ? 112.27 108.30 3.97 0.30 N 90 1 "O4'" D DG 48 ? ? "C1'" D DG 48 ? ? "C2'" D DG 48 ? ? 100.99 105.90 -4.91 0.80 N 91 1 "O4'" D DG 48 ? ? "C1'" D DG 48 ? ? N9 D DG 48 ? ? 112.95 108.30 4.65 0.30 N 92 1 N1 D DG 48 ? ? C6 D DG 48 ? ? O6 D DG 48 ? ? 116.30 119.90 -3.60 0.60 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id C _pdbx_validate_planes.auth_seq_id 30 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.059 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 3 A BRU 3 ? DU ? 2 C BRU 3 C BRU 27 ? DU ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'COVALENT PT-N BONDS' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 CPT PT1 PT N N 34 CPT N1 N N N 35 CPT N2 N N N 36 CPT H11 H N N 37 CPT H12 H N N 38 CPT H21 H N N 39 CPT H22 H N N 40 CPT CL2 CL N N 41 CPT CL1 CL N N 42 CPT H13 H N N 43 CPT H23 H N N 44 DA OP3 O N N 45 DA P P N N 46 DA OP1 O N N 47 DA OP2 O N N 48 DA "O5'" O N N 49 DA "C5'" C N N 50 DA "C4'" C N R 51 DA "O4'" O N N 52 DA "C3'" C N S 53 DA "O3'" O N N 54 DA "C2'" C N N 55 DA "C1'" C N R 56 DA N9 N Y N 57 DA C8 C Y N 58 DA N7 N Y N 59 DA C5 C Y N 60 DA C6 C Y N 61 DA N6 N N N 62 DA N1 N Y N 63 DA C2 C Y N 64 DA N3 N Y N 65 DA C4 C Y N 66 DA HOP3 H N N 67 DA HOP2 H N N 68 DA "H5'" H N N 69 DA "H5''" H N N 70 DA "H4'" H N N 71 DA "H3'" H N N 72 DA "HO3'" H N N 73 DA "H2'" H N N 74 DA "H2''" H N N 75 DA "H1'" H N N 76 DA H8 H N N 77 DA H61 H N N 78 DA H62 H N N 79 DA H2 H N N 80 DC OP3 O N N 81 DC P P N N 82 DC OP1 O N N 83 DC OP2 O N N 84 DC "O5'" O N N 85 DC "C5'" C N N 86 DC "C4'" C N R 87 DC "O4'" O N N 88 DC "C3'" C N S 89 DC "O3'" O N N 90 DC "C2'" C N N 91 DC "C1'" C N R 92 DC N1 N N N 93 DC C2 C N N 94 DC O2 O N N 95 DC N3 N N N 96 DC C4 C N N 97 DC N4 N N N 98 DC C5 C N N 99 DC C6 C N N 100 DC HOP3 H N N 101 DC HOP2 H N N 102 DC "H5'" H N N 103 DC "H5''" H N N 104 DC "H4'" H N N 105 DC "H3'" H N N 106 DC "HO3'" H N N 107 DC "H2'" H N N 108 DC "H2''" H N N 109 DC "H1'" H N N 110 DC H41 H N N 111 DC H42 H N N 112 DC H5 H N N 113 DC H6 H N N 114 DG OP3 O N N 115 DG P P N N 116 DG OP1 O N N 117 DG OP2 O N N 118 DG "O5'" O N N 119 DG "C5'" C N N 120 DG "C4'" C N R 121 DG "O4'" O N N 122 DG "C3'" C N S 123 DG "O3'" O N N 124 DG "C2'" C N N 125 DG "C1'" C N R 126 DG N9 N Y N 127 DG C8 C Y N 128 DG N7 N Y N 129 DG C5 C Y N 130 DG C6 C N N 131 DG O6 O N N 132 DG N1 N N N 133 DG C2 C N N 134 DG N2 N N N 135 DG N3 N N N 136 DG C4 C Y N 137 DG HOP3 H N N 138 DG HOP2 H N N 139 DG "H5'" H N N 140 DG "H5''" H N N 141 DG "H4'" H N N 142 DG "H3'" H N N 143 DG "HO3'" H N N 144 DG "H2'" H N N 145 DG "H2''" H N N 146 DG "H1'" H N N 147 DG H8 H N N 148 DG H1 H N N 149 DG H21 H N N 150 DG H22 H N N 151 DT OP3 O N N 152 DT P P N N 153 DT OP1 O N N 154 DT OP2 O N N 155 DT "O5'" O N N 156 DT "C5'" C N N 157 DT "C4'" C N R 158 DT "O4'" O N N 159 DT "C3'" C N S 160 DT "O3'" O N N 161 DT "C2'" C N N 162 DT "C1'" C N R 163 DT N1 N N N 164 DT C2 C N N 165 DT O2 O N N 166 DT N3 N N N 167 DT C4 C N N 168 DT O4 O N N 169 DT C5 C N N 170 DT C7 C N N 171 DT C6 C N N 172 DT HOP3 H N N 173 DT HOP2 H N N 174 DT "H5'" H N N 175 DT "H5''" H N N 176 DT "H4'" H N N 177 DT "H3'" H N N 178 DT "HO3'" H N N 179 DT "H2'" H N N 180 DT "H2''" H N N 181 DT "H1'" H N N 182 DT H3 H N N 183 DT H71 H N N 184 DT H72 H N N 185 DT H73 H N N 186 DT H6 H N N 187 HOH O O N N 188 HOH H1 H N N 189 HOH H2 H N N 190 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 CPT PT1 N1 sing N N 35 CPT PT1 N2 sing N N 36 CPT N1 H11 sing N N 37 CPT N1 H12 sing N N 38 CPT N1 H13 sing N N 39 CPT N2 H21 sing N N 40 CPT N2 H22 sing N N 41 CPT N2 H23 sing N N 42 CPT CL2 PT1 sing N N 43 CPT CL1 PT1 sing N N 44 DA OP3 P sing N N 45 DA OP3 HOP3 sing N N 46 DA P OP1 doub N N 47 DA P OP2 sing N N 48 DA P "O5'" sing N N 49 DA OP2 HOP2 sing N N 50 DA "O5'" "C5'" sing N N 51 DA "C5'" "C4'" sing N N 52 DA "C5'" "H5'" sing N N 53 DA "C5'" "H5''" sing N N 54 DA "C4'" "O4'" sing N N 55 DA "C4'" "C3'" sing N N 56 DA "C4'" "H4'" sing N N 57 DA "O4'" "C1'" sing N N 58 DA "C3'" "O3'" sing N N 59 DA "C3'" "C2'" sing N N 60 DA "C3'" "H3'" sing N N 61 DA "O3'" "HO3'" sing N N 62 DA "C2'" "C1'" sing N N 63 DA "C2'" "H2'" sing N N 64 DA "C2'" "H2''" sing N N 65 DA "C1'" N9 sing N N 66 DA "C1'" "H1'" sing N N 67 DA N9 C8 sing Y N 68 DA N9 C4 sing Y N 69 DA C8 N7 doub Y N 70 DA C8 H8 sing N N 71 DA N7 C5 sing Y N 72 DA C5 C6 sing Y N 73 DA C5 C4 doub Y N 74 DA C6 N6 sing N N 75 DA C6 N1 doub Y N 76 DA N6 H61 sing N N 77 DA N6 H62 sing N N 78 DA N1 C2 sing Y N 79 DA C2 N3 doub Y N 80 DA C2 H2 sing N N 81 DA N3 C4 sing Y N 82 DC OP3 P sing N N 83 DC OP3 HOP3 sing N N 84 DC P OP1 doub N N 85 DC P OP2 sing N N 86 DC P "O5'" sing N N 87 DC OP2 HOP2 sing N N 88 DC "O5'" "C5'" sing N N 89 DC "C5'" "C4'" sing N N 90 DC "C5'" "H5'" sing N N 91 DC "C5'" "H5''" sing N N 92 DC "C4'" "O4'" sing N N 93 DC "C4'" "C3'" sing N N 94 DC "C4'" "H4'" sing N N 95 DC "O4'" "C1'" sing N N 96 DC "C3'" "O3'" sing N N 97 DC "C3'" "C2'" sing N N 98 DC "C3'" "H3'" sing N N 99 DC "O3'" "HO3'" sing N N 100 DC "C2'" "C1'" sing N N 101 DC "C2'" "H2'" sing N N 102 DC "C2'" "H2''" sing N N 103 DC "C1'" N1 sing N N 104 DC "C1'" "H1'" sing N N 105 DC N1 C2 sing N N 106 DC N1 C6 sing N N 107 DC C2 O2 doub N N 108 DC C2 N3 sing N N 109 DC N3 C4 doub N N 110 DC C4 N4 sing N N 111 DC C4 C5 sing N N 112 DC N4 H41 sing N N 113 DC N4 H42 sing N N 114 DC C5 C6 doub N N 115 DC C5 H5 sing N N 116 DC C6 H6 sing N N 117 DG OP3 P sing N N 118 DG OP3 HOP3 sing N N 119 DG P OP1 doub N N 120 DG P OP2 sing N N 121 DG P "O5'" sing N N 122 DG OP2 HOP2 sing N N 123 DG "O5'" "C5'" sing N N 124 DG "C5'" "C4'" sing N N 125 DG "C5'" "H5'" sing N N 126 DG "C5'" "H5''" sing N N 127 DG "C4'" "O4'" sing N N 128 DG "C4'" "C3'" sing N N 129 DG "C4'" "H4'" sing N N 130 DG "O4'" "C1'" sing N N 131 DG "C3'" "O3'" sing N N 132 DG "C3'" "C2'" sing N N 133 DG "C3'" "H3'" sing N N 134 DG "O3'" "HO3'" sing N N 135 DG "C2'" "C1'" sing N N 136 DG "C2'" "H2'" sing N N 137 DG "C2'" "H2''" sing N N 138 DG "C1'" N9 sing N N 139 DG "C1'" "H1'" sing N N 140 DG N9 C8 sing Y N 141 DG N9 C4 sing Y N 142 DG C8 N7 doub Y N 143 DG C8 H8 sing N N 144 DG N7 C5 sing Y N 145 DG C5 C6 sing N N 146 DG C5 C4 doub Y N 147 DG C6 O6 doub N N 148 DG C6 N1 sing N N 149 DG N1 C2 sing N N 150 DG N1 H1 sing N N 151 DG C2 N2 sing N N 152 DG C2 N3 doub N N 153 DG N2 H21 sing N N 154 DG N2 H22 sing N N 155 DG N3 C4 sing N N 156 DT OP3 P sing N N 157 DT OP3 HOP3 sing N N 158 DT P OP1 doub N N 159 DT P OP2 sing N N 160 DT P "O5'" sing N N 161 DT OP2 HOP2 sing N N 162 DT "O5'" "C5'" sing N N 163 DT "C5'" "C4'" sing N N 164 DT "C5'" "H5'" sing N N 165 DT "C5'" "H5''" sing N N 166 DT "C4'" "O4'" sing N N 167 DT "C4'" "C3'" sing N N 168 DT "C4'" "H4'" sing N N 169 DT "O4'" "C1'" sing N N 170 DT "C3'" "O3'" sing N N 171 DT "C3'" "C2'" sing N N 172 DT "C3'" "H3'" sing N N 173 DT "O3'" "HO3'" sing N N 174 DT "C2'" "C1'" sing N N 175 DT "C2'" "H2'" sing N N 176 DT "C2'" "H2''" sing N N 177 DT "C1'" N1 sing N N 178 DT "C1'" "H1'" sing N N 179 DT N1 C2 sing N N 180 DT N1 C6 sing N N 181 DT C2 O2 doub N N 182 DT C2 N3 sing N N 183 DT N3 C4 sing N N 184 DT N3 H3 sing N N 185 DT C4 O4 doub N N 186 DT C4 C5 sing N N 187 DT C5 C7 sing N N 188 DT C5 C6 doub N N 189 DT C7 H71 sing N N 190 DT C7 H72 sing N N 191 DT C7 H73 sing N N 192 DT C6 H6 sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1AIO 'double helix' 1AIO 'a-form double helix' 1AIO 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.511 -0.371 -0.187 6.527 -1.910 -2.720 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DC 2 1_555 B DG 11 1_555 0.339 -0.413 -0.184 4.705 -2.478 -1.845 2 A_DC2:DG23_B A 2 ? B 23 ? 19 1 1 A BRU 3 1_555 B DA 10 1_555 -0.256 -0.327 -0.271 4.569 -6.618 -0.700 3 A_BRU3:DA22_B A 3 ? B 22 ? 20 1 1 A DC 4 1_555 B DG 9 1_555 0.484 -0.283 0.048 -1.834 -5.977 3.171 4 A_DC4:DG21_B A 4 ? B 21 ? 19 1 1 A DT 5 1_555 B DA 8 1_555 0.569 -0.214 0.054 7.088 -3.429 3.505 5 A_DT5:DA20_B A 5 ? B 20 ? 20 1 1 A DG 6 1_555 B DC 7 1_555 -0.121 -0.326 0.250 15.408 -18.375 -5.521 6 A_DG6:DC19_B A 6 ? B 19 ? 19 1 1 A DG 7 1_555 B DC 6 1_555 -1.005 -0.573 0.166 -2.021 -14.499 -4.609 7 A_DG7:DC18_B A 7 ? B 18 ? 19 1 1 A DT 8 1_555 B DA 5 1_555 0.533 0.231 0.186 -2.420 -22.676 6.885 8 A_DT8:DA17_B A 8 ? B 17 ? ? ? 1 A DC 9 1_555 B DG 4 1_555 -0.353 -0.250 0.364 -16.880 -9.832 -0.887 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DT 10 1_555 B DA 3 1_555 -0.131 -0.167 0.148 -3.012 -10.117 5.992 10 A_DT10:DA15_B A 10 ? B 15 ? 20 1 1 A DC 11 1_555 B DG 2 1_555 0.593 -0.520 -0.376 7.463 -17.494 -2.106 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 0.473 -0.423 0.047 -2.924 -3.075 -2.198 12 A_DC12:DG13_B A 12 ? B 13 ? 19 1 1 C DC 1 1_555 D DG 12 1_555 0.453 -0.383 -0.422 9.706 -3.146 -1.576 13 C_DC25:DG48_D C 25 ? D 48 ? 19 1 1 C DC 2 1_555 D DG 11 1_555 0.480 -0.404 0.097 -2.653 -2.653 -1.211 14 C_DC26:DG47_D C 26 ? D 47 ? 19 1 1 C BRU 3 1_555 D DA 10 1_555 -0.163 -0.296 -0.310 5.017 -9.789 1.321 15 C_BRU27:DA46_D C 27 ? D 46 ? 20 1 1 C DC 4 1_555 D DG 9 1_555 0.016 -0.231 -0.043 -2.103 -5.960 3.681 16 C_DC28:DG45_D C 28 ? D 45 ? 19 1 1 C DT 5 1_555 D DA 8 1_555 0.225 -0.273 -0.053 6.504 -8.732 -2.207 17 C_DT29:DA44_D C 29 ? D 44 ? 20 1 1 C DG 6 1_555 D DC 7 1_555 -0.415 -0.451 0.329 14.938 -17.988 -4.106 18 C_DG30:DC43_D C 30 ? D 43 ? 19 1 1 C DG 7 1_555 D DC 6 1_555 -0.737 -0.501 0.320 -1.832 -19.937 -2.730 19 C_DG31:DC42_D C 31 ? D 42 ? 19 1 1 C DT 8 1_555 D DA 5 1_555 0.593 0.216 0.231 -2.231 -19.930 6.087 20 C_DT32:DA41_D C 32 ? D 41 ? ? ? 1 C DC 9 1_555 D DG 4 1_555 0.362 -0.424 0.182 -11.601 -10.466 -2.298 21 C_DC33:DG40_D C 33 ? D 40 ? 19 1 1 C DT 10 1_555 D DA 3 1_555 0.183 0.156 -0.309 4.656 -6.834 4.936 22 C_DT34:DA39_D C 34 ? D 39 ? 20 1 1 C DC 11 1_555 D DG 2 1_555 0.508 -0.392 0.082 1.645 -13.069 -0.756 23 C_DC35:DG38_D C 35 ? D 38 ? 19 1 1 C DC 12 1_555 D DG 1 1_555 0.439 -0.437 -0.208 -1.068 -7.858 -0.470 24 C_DC36:DG37_D C 36 ? D 37 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DC 2 1_555 B DG 11 1_555 -0.664 -2.136 3.451 -3.158 4.079 27.654 -5.372 0.610 3.164 8.442 6.535 28.122 1 AA_DC1DC2:DG23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DC 2 1_555 B DG 11 1_555 A BRU 3 1_555 B DA 10 1_555 -0.576 -2.004 3.338 -0.754 5.491 28.789 -5.106 0.981 2.927 10.917 1.499 29.306 2 AA_DC2BRU3:DA22DG23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A BRU 3 1_555 B DA 10 1_555 A DC 4 1_555 B DG 9 1_555 0.568 -1.563 3.542 -1.441 5.408 35.167 -3.379 -1.148 3.248 8.881 2.366 35.595 3 AA_BRU3DC4:DG21DA22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DC 4 1_555 B DG 9 1_555 A DT 5 1_555 B DA 8 1_555 0.116 -1.594 3.186 1.662 0.511 28.302 -3.369 0.135 3.159 1.045 -3.394 28.354 4 AA_DC4DT5:DA20DG21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DT 5 1_555 B DA 8 1_555 A DG 6 1_555 B DC 7 1_555 -1.355 -1.345 3.229 -0.565 10.934 25.570 -5.199 2.697 2.483 23.385 1.209 27.780 5 AA_DT5DG6:DC19DA20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DG 6 1_555 B DC 7 1_555 A DG 7 1_555 B DC 6 1_555 1.520 -1.933 3.384 0.132 26.930 24.821 -6.056 -2.414 0.925 48.089 -0.236 36.467 6 AA_DG6DG7:DC18DC19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DG 7 1_555 B DC 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.176 -0.971 3.346 1.893 2.439 43.119 -1.560 0.427 3.279 3.313 -2.572 43.224 7 AA_DG7DT8:DA17DC18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.300 -0.610 3.633 2.214 3.331 37.021 -1.444 -0.146 3.578 5.228 -3.474 37.229 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DT 10 1_555 B DA 3 1_555 -0.071 -0.082 3.046 2.565 3.401 28.226 -0.885 0.688 2.998 6.925 -5.223 28.539 9 AA_DC9DT10:DA15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DT 10 1_555 B DA 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.081 0.020 2.938 6.117 5.979 41.103 -0.531 0.685 2.873 8.407 -8.601 41.946 10 AA_DT10DC11:DG14DA15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DC 12 1_555 B DG 1 1_555 0.309 -0.241 3.695 -0.539 5.167 33.464 -1.349 -0.627 3.613 8.907 0.929 33.853 11 AA_DC11DC12:DG13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 C DC 1 1_555 D DG 12 1_555 C DC 2 1_555 D DG 11 1_555 -0.755 -2.055 3.728 -5.113 4.155 28.404 -5.097 0.255 3.479 8.327 10.246 29.143 12 CC_DC25DC26:DG47DG48_DD C 25 ? D 48 ? C 26 ? D 47 ? 1 C DC 2 1_555 D DG 11 1_555 C BRU 3 1_555 D DA 10 1_555 -0.582 -1.964 3.101 1.855 6.117 28.779 -5.013 1.494 2.595 12.118 -3.675 29.466 13 CC_DC26BRU27:DA46DG47_DD C 26 ? D 47 ? C 27 ? D 46 ? 1 C BRU 3 1_555 D DA 10 1_555 C DC 4 1_555 D DG 9 1_555 0.517 -1.563 3.587 -0.831 3.864 29.135 -3.962 -1.208 3.340 7.637 1.643 29.396 14 CC_BRU27DC28:DG45DA46_DD C 27 ? D 46 ? C 28 ? D 45 ? 1 C DC 4 1_555 D DG 9 1_555 C DT 5 1_555 D DA 8 1_555 -0.054 -1.453 3.127 1.374 5.483 32.606 -3.403 0.308 2.847 9.675 -2.424 33.080 15 CC_DC28DT29:DA44DG45_DD C 28 ? D 45 ? C 29 ? D 44 ? 1 C DT 5 1_555 D DA 8 1_555 C DG 6 1_555 D DC 7 1_555 -0.920 -1.559 3.310 -2.850 7.700 22.990 -5.986 1.328 2.743 18.576 6.875 24.393 16 CC_DT29DG30:DC43DA44_DD C 29 ? D 44 ? C 30 ? D 43 ? 1 C DG 6 1_555 D DC 7 1_555 C DG 7 1_555 D DC 6 1_555 1.505 -1.887 3.364 0.459 28.910 28.419 -5.384 -2.142 1.088 46.399 -0.737 40.329 17 CC_DG30DG31:DC42DC43_DD C 30 ? D 43 ? C 31 ? D 42 ? 1 C DG 7 1_555 D DC 6 1_555 C DT 8 1_555 D DA 5 1_555 -0.160 -0.935 3.350 1.236 1.618 42.382 -1.459 0.349 3.308 2.237 -1.708 42.429 18 CC_DG31DT32:DA41DC42_DD C 31 ? D 42 ? C 32 ? D 41 ? 1 C DT 8 1_555 D DA 5 1_555 C DC 9 1_555 D DG 4 1_555 0.176 -0.546 3.510 4.547 3.520 38.118 -1.293 0.336 3.445 5.353 -6.915 38.534 19 CC_DT32DC33:DG40DA41_DD C 32 ? D 41 ? C 33 ? D 40 ? 1 C DC 9 1_555 D DG 4 1_555 C DT 10 1_555 D DA 3 1_555 -0.099 0.110 3.021 5.929 7.418 27.720 -1.269 1.385 2.872 14.939 -11.939 29.272 20 CC_DC33DT34:DA39DG40_DD C 33 ? D 40 ? C 34 ? D 39 ? 1 C DT 10 1_555 D DA 3 1_555 C DC 11 1_555 D DG 2 1_555 -0.176 -0.109 3.342 -2.448 4.726 36.151 -0.840 -0.064 3.306 7.565 3.919 36.528 21 CC_DT34DC35:DG38DA39_DD C 34 ? D 39 ? C 35 ? D 38 ? 1 C DC 11 1_555 D DG 2 1_555 C DC 12 1_555 D DG 1 1_555 0.411 -0.118 3.358 5.551 2.486 37.370 -0.513 0.104 3.368 3.848 -8.593 37.844 22 CC_DC35DC36:DG37DG38_DD C 35 ? D 38 ? C 36 ? D 37 ? # _atom_sites.entry_id 1AIO _atom_sites.fract_transf_matrix[1][1] 0.031980 _atom_sites.fract_transf_matrix[1][2] -0.004046 _atom_sites.fract_transf_matrix[1][3] -0.002294 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028426 _atom_sites.fract_transf_matrix[2][3] -0.004829 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021668 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P PT # loop_