HEADER RHO-GTPASE INHIBITOR 11-MAY-97 1AJW TITLE STRUCTURE OF RHOGDI: A C-TERMINAL BINDING DOMAIN TARGETS AN N-TERMINAL TITLE 2 INHIBITORY PEPTIDE TO GTPASES, NMR, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHOGDI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ISOPRENE BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 CELL_LINE: BL21; SOURCE 6 GENE: RHO; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 EXPRESSION_SYSTEM_GENE: RHO KEYWDS RHO-GTPASE INHIBITOR, NUCLEOTIDE EXCHANGE, ISOPRENE BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.K.ROSEN,Y.Q.GOSSER REVDAT 4 22-MAY-24 1AJW 1 REMARK REVDAT 3 16-FEB-22 1AJW 1 REMARK REVDAT 2 24-FEB-09 1AJW 1 VERSN REVDAT 1 19-NOV-97 1AJW 0 JRNL AUTH Y.Q.GOSSER,T.K.NOMANBHOY,B.AGHAZADEH,D.MANOR,C.COMBS, JRNL AUTH 2 R.A.CERIONE,M.K.ROSEN JRNL TITL C-TERMINAL BINDING DOMAIN OF RHO GDP-DISSOCIATION INHIBITOR JRNL TITL 2 DIRECTS N-TERMINAL INHIBITORY PEPTIDE TO GTPASES. JRNL REF NATURE V. 387 814 1997 JRNL REFN ISSN 0028-0836 JRNL PMID 9194563 JRNL DOI 10.1038/42961 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AJW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170907. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCACB; CBCACONNH; HNCO; CCC REMARK 210 -TOCSY-NNH; HCC-TOCSY-NNH; 15N- REMARK 210 TOCSY; HCCH-TOCSY; HCCH-COSY; REMARK 210 15N-NOESY; 15N/13C-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, X-PLOR REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY/ REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO DISTANCE VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 62 -159.28 53.04 REMARK 500 1 PRO A 65 -88.34 -71.69 REMARK 500 1 SER A 80 18.70 55.83 REMARK 500 1 THR A 81 -45.81 -142.26 REMARK 500 1 ALA A 82 -179.18 -57.77 REMARK 500 1 THR A 91 -42.69 -135.87 REMARK 500 1 ASP A 93 92.04 -57.22 REMARK 500 1 GLU A 106 -46.81 -23.46 REMARK 500 1 ARG A 120 -65.83 -155.96 REMARK 500 1 VAL A 123 74.94 -114.80 REMARK 500 1 SER A 124 85.04 -64.82 REMARK 500 1 GLN A 130 111.45 -168.58 REMARK 500 1 THR A 132 79.07 -68.62 REMARK 500 1 ASP A 140 115.76 -166.20 REMARK 500 1 VAL A 146 -69.59 -96.90 REMARK 500 1 ALA A 153 -38.36 -170.55 REMARK 500 1 GLU A 154 -154.38 -129.88 REMARK 500 1 TYR A 156 -166.06 -115.74 REMARK 500 1 PRO A 161 -171.41 -65.57 REMARK 500 1 ASP A 185 -75.14 -117.19 REMARK 500 1 ARG A 186 23.29 -170.38 REMARK 500 1 THR A 187 -172.60 -173.09 REMARK 500 1 TRP A 192 -154.63 -145.57 REMARK 500 1 LYS A 199 -155.96 -134.55 REMARK 500 1 LYS A 200 -63.05 -93.83 REMARK 500 1 LYS A 203 38.97 -169.03 REMARK 500 2 ASP A 64 175.42 54.90 REMARK 500 2 ASN A 66 97.22 53.09 REMARK 500 2 VAL A 67 85.09 -163.07 REMARK 500 2 ASN A 69 -71.79 -98.61 REMARK 500 2 SER A 80 -72.55 -111.34 REMARK 500 2 THR A 81 32.54 -96.63 REMARK 500 2 THR A 91 -45.64 -149.37 REMARK 500 2 LEU A 104 -169.67 -114.89 REMARK 500 2 ARG A 120 -70.46 -145.04 REMARK 500 2 ARG A 134 -150.96 -120.17 REMARK 500 2 LYS A 135 66.43 -69.74 REMARK 500 2 PRO A 151 -165.94 -70.24 REMARK 500 2 ARG A 152 34.02 37.70 REMARK 500 2 GLU A 154 -159.56 55.90 REMARK 500 2 TYR A 156 -165.49 -105.69 REMARK 500 2 MET A 162 106.28 -51.73 REMARK 500 2 THR A 182 -171.06 -171.62 REMARK 500 2 ASP A 183 -154.73 -111.09 REMARK 500 2 ASP A 185 27.69 -171.70 REMARK 500 2 THR A 187 -162.67 -176.99 REMARK 500 2 TRP A 192 -155.69 -135.83 REMARK 500 2 LYS A 199 -159.23 -153.94 REMARK 500 2 GLU A 201 69.97 -160.06 REMARK 500 2 LYS A 203 46.17 -154.44 REMARK 500 REMARK 500 THIS ENTRY HAS 423 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 74 0.30 SIDE CHAIN REMARK 500 1 ARG A 111 0.28 SIDE CHAIN REMARK 500 1 ARG A 117 0.26 SIDE CHAIN REMARK 500 1 ARG A 120 0.29 SIDE CHAIN REMARK 500 1 ARG A 134 0.31 SIDE CHAIN REMARK 500 1 ARG A 152 0.29 SIDE CHAIN REMARK 500 1 ARG A 172 0.20 SIDE CHAIN REMARK 500 1 ARG A 180 0.30 SIDE CHAIN REMARK 500 1 ARG A 186 0.31 SIDE CHAIN REMARK 500 2 ARG A 74 0.23 SIDE CHAIN REMARK 500 2 ARG A 111 0.23 SIDE CHAIN REMARK 500 2 ARG A 117 0.32 SIDE CHAIN REMARK 500 2 ARG A 120 0.32 SIDE CHAIN REMARK 500 2 ARG A 134 0.24 SIDE CHAIN REMARK 500 2 ARG A 152 0.31 SIDE CHAIN REMARK 500 2 ARG A 172 0.26 SIDE CHAIN REMARK 500 2 ARG A 180 0.32 SIDE CHAIN REMARK 500 2 ARG A 186 0.32 SIDE CHAIN REMARK 500 3 ARG A 74 0.22 SIDE CHAIN REMARK 500 3 ARG A 111 0.27 SIDE CHAIN REMARK 500 3 ARG A 117 0.31 SIDE CHAIN REMARK 500 3 ARG A 120 0.27 SIDE CHAIN REMARK 500 3 ARG A 134 0.28 SIDE CHAIN REMARK 500 3 ARG A 152 0.31 SIDE CHAIN REMARK 500 3 ARG A 172 0.31 SIDE CHAIN REMARK 500 3 ARG A 180 0.23 SIDE CHAIN REMARK 500 3 ARG A 186 0.27 SIDE CHAIN REMARK 500 4 ARG A 74 0.23 SIDE CHAIN REMARK 500 4 ARG A 111 0.29 SIDE CHAIN REMARK 500 4 ARG A 117 0.29 SIDE CHAIN REMARK 500 4 ARG A 120 0.21 SIDE CHAIN REMARK 500 4 ARG A 134 0.14 SIDE CHAIN REMARK 500 4 ARG A 152 0.26 SIDE CHAIN REMARK 500 4 ARG A 172 0.29 SIDE CHAIN REMARK 500 4 ARG A 180 0.31 SIDE CHAIN REMARK 500 4 ARG A 186 0.31 SIDE CHAIN REMARK 500 5 ARG A 74 0.22 SIDE CHAIN REMARK 500 5 ARG A 111 0.30 SIDE CHAIN REMARK 500 5 ARG A 117 0.30 SIDE CHAIN REMARK 500 5 ARG A 120 0.30 SIDE CHAIN REMARK 500 5 ARG A 134 0.29 SIDE CHAIN REMARK 500 5 ARG A 152 0.30 SIDE CHAIN REMARK 500 5 ARG A 172 0.30 SIDE CHAIN REMARK 500 5 ARG A 180 0.26 SIDE CHAIN REMARK 500 5 ARG A 186 0.24 SIDE CHAIN REMARK 500 6 ARG A 74 0.24 SIDE CHAIN REMARK 500 6 ARG A 111 0.25 SIDE CHAIN REMARK 500 6 ARG A 117 0.31 SIDE CHAIN REMARK 500 6 ARG A 120 0.23 SIDE CHAIN REMARK 500 6 ARG A 134 0.29 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 180 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GDF RELATED DB: PDB DBREF 1AJW A 60 204 UNP P19803 GDIR_BOVIN 60 204 SEQRES 1 A 145 ALA VAL SER ALA ASP PRO ASN VAL PRO ASN VAL VAL VAL SEQRES 2 A 145 THR ARG LEU THR LEU VAL CYS SER THR ALA PRO GLY PRO SEQRES 3 A 145 LEU GLU LEU ASP LEU THR GLY ASP LEU GLU SER PHE LYS SEQRES 4 A 145 LYS GLN SER PHE VAL LEU LYS GLU GLY VAL GLU TYR ARG SEQRES 5 A 145 ILE LYS ILE SER PHE ARG VAL ASN ARG GLU ILE VAL SER SEQRES 6 A 145 GLY MET LYS TYR ILE GLN HIS THR TYR ARG LYS GLY VAL SEQRES 7 A 145 LYS ILE ASP LYS THR ASP TYR MET VAL GLY SER TYR GLY SEQRES 8 A 145 PRO ARG ALA GLU GLU TYR GLU PHE LEU THR PRO MET GLU SEQRES 9 A 145 GLU ALA PRO LYS GLY MET LEU ALA ARG GLY SER TYR ASN SEQRES 10 A 145 ILE LYS SER ARG PHE THR ASP ASP ASP ARG THR ASP HIS SEQRES 11 A 145 LEU SER TRP GLU TRP ASN LEU THR ILE LYS LYS GLU TRP SEQRES 12 A 145 LYS ASP HELIX 1 1 GLU A 95 LYS A 99 3 5 SHEET 1 A 5 SER A 101 LYS A 105 0 SHEET 2 A 5 LEU A 190 LYS A 199 1 N ASN A 195 O PHE A 102 SHEET 3 A 5 GLY A 173 PHE A 181 -1 N PHE A 181 O LEU A 190 SHEET 4 A 5 LYS A 127 TYR A 133 -1 N TYR A 133 O ASN A 176 SHEET 5 A 5 LYS A 141 MET A 145 -1 N TYR A 144 O TYR A 128 SHEET 1 B 3 GLU A 155 GLU A 157 0 SHEET 2 B 3 ARG A 111 VAL A 118 -1 N PHE A 116 O TYR A 156 SHEET 3 B 3 VAL A 70 VAL A 78 -1 N VAL A 78 O ARG A 111 SHEET 1 C 2 VAL A 123 MET A 126 0 SHEET 2 C 2 GLY A 147 TYR A 149 -1 N TYR A 149 O VAL A 123 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1