data_1AKY # _entry.id 1AKY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1AKY WWPDB D_1000170945 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AKY _pdbx_database_status.recvd_initial_deposition_date 1995-07-28 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abele, U.' 1 'Schulz, G.E.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer.' 'Protein Sci.' 4 1262 1271 1995 PRCIEI US 0961-8368 0795 ? 7670369 ? 1 'Stability, Activity and Structure of Adenylate Kinase Mutants' Eur.J.Biochem. 231 405 ? 1995 EJBCAI IX 0014-2956 0262 ? ? ? 2 ;The C-DNA Sequence Encoding Cytosolic Adenylate Kinase from Baker'S Yeast (Saccharomyces Cerevisiae) ; 'Nucleic Acids Res.' 15 7187 ? 1987 NARHAD UK 0305-1048 0389 ? ? ? 3 'Structure of the Complex of Yeast Adenylate Kinase with the Inhibitor Ap5A at 2.6 Angstroms Resolution' J.Mol.Biol. 195 649 ? 1987 JMOBAK UK 0022-2836 0070 ? ? ? 4 ;The Complete Amino Acid Sequence of Adenylate Kinase from Baker'S Yeast ; Eur.J.Biochem. 155 111 ? 1986 EJBCAI IX 0014-2956 0262 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Abele, U.' 1 primary 'Schulz, G.E.' 2 1 'Spuergin, P.' 3 1 'Abele, U.' 4 1 'Schulz, G.E.' 5 2 'Proba, K.' 6 2 'Tomasselli, A.G.' 7 2 'Nielsen, P.' 8 2 'Schulz, G.E.' 9 3 'Egner, U.' 10 3 'Tomasselli, A.G.' 11 3 'Schulz, G.E.' 12 4 'Tomasselli, A.G.' 13 4 'Mast, E.' 14 4 'Janes, W.' 15 4 'Schiltz, E.' 16 # _cell.entry_id 1AKY _cell.length_a 36.300 _cell.length_b 40.500 _cell.length_c 45.700 _cell.angle_alpha 110.80 _cell.angle_beta 109.00 _cell.angle_gamma 63.30 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AKY _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ADENYLATE KINASE' 24068.518 1 2.7.4.3 ? ? ? 2 non-polymer syn "BIS(ADENOSINE)-5'-PENTAPHOSPHATE" 916.367 1 ? ? ? ? 3 non-polymer syn IMIDAZOLE 69.085 1 ? ? ? ? 4 water nat water 18.015 131 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ATP\:AMP PHOSPHOTRANSFERASE, MYOKINASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SSESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGE ALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGKN ; _entity_poly.pdbx_seq_one_letter_code_can ;SSESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGE ALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGKN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 GLU n 1 4 SER n 1 5 ILE n 1 6 ARG n 1 7 MET n 1 8 VAL n 1 9 LEU n 1 10 ILE n 1 11 GLY n 1 12 PRO n 1 13 PRO n 1 14 GLY n 1 15 ALA n 1 16 GLY n 1 17 LYS n 1 18 GLY n 1 19 THR n 1 20 GLN n 1 21 ALA n 1 22 PRO n 1 23 ASN n 1 24 LEU n 1 25 GLN n 1 26 GLU n 1 27 ARG n 1 28 PHE n 1 29 HIS n 1 30 ALA n 1 31 ALA n 1 32 HIS n 1 33 LEU n 1 34 ALA n 1 35 THR n 1 36 GLY n 1 37 ASP n 1 38 MET n 1 39 LEU n 1 40 ARG n 1 41 SER n 1 42 GLN n 1 43 ILE n 1 44 ALA n 1 45 LYS n 1 46 GLY n 1 47 THR n 1 48 GLN n 1 49 LEU n 1 50 GLY n 1 51 LEU n 1 52 GLU n 1 53 ALA n 1 54 LYS n 1 55 LYS n 1 56 ILE n 1 57 MET n 1 58 ASP n 1 59 GLN n 1 60 GLY n 1 61 GLY n 1 62 LEU n 1 63 VAL n 1 64 SER n 1 65 ASP n 1 66 ASP n 1 67 ILE n 1 68 MET n 1 69 VAL n 1 70 ASN n 1 71 MET n 1 72 ILE n 1 73 LYS n 1 74 ASP n 1 75 GLU n 1 76 LEU n 1 77 THR n 1 78 ASN n 1 79 ASN n 1 80 PRO n 1 81 ALA n 1 82 CYS n 1 83 LYS n 1 84 ASN n 1 85 GLY n 1 86 PHE n 1 87 ILE n 1 88 LEU n 1 89 ASP n 1 90 GLY n 1 91 PHE n 1 92 PRO n 1 93 ARG n 1 94 THR n 1 95 ILE n 1 96 PRO n 1 97 GLN n 1 98 ALA n 1 99 GLU n 1 100 LYS n 1 101 LEU n 1 102 ASP n 1 103 GLN n 1 104 MET n 1 105 LEU n 1 106 LYS n 1 107 GLU n 1 108 GLN n 1 109 GLY n 1 110 THR n 1 111 PRO n 1 112 LEU n 1 113 GLU n 1 114 LYS n 1 115 ALA n 1 116 ILE n 1 117 GLU n 1 118 LEU n 1 119 LYS n 1 120 VAL n 1 121 ASP n 1 122 ASP n 1 123 GLU n 1 124 LEU n 1 125 LEU n 1 126 VAL n 1 127 ALA n 1 128 ARG n 1 129 ILE n 1 130 THR n 1 131 GLY n 1 132 ARG n 1 133 LEU n 1 134 ILE n 1 135 HIS n 1 136 PRO n 1 137 ALA n 1 138 SER n 1 139 GLY n 1 140 ARG n 1 141 SER n 1 142 TYR n 1 143 HIS n 1 144 LYS n 1 145 ILE n 1 146 PHE n 1 147 ASN n 1 148 PRO n 1 149 PRO n 1 150 LYS n 1 151 GLU n 1 152 ASP n 1 153 MET n 1 154 LYS n 1 155 ASP n 1 156 ASP n 1 157 VAL n 1 158 THR n 1 159 GLY n 1 160 GLU n 1 161 ALA n 1 162 LEU n 1 163 VAL n 1 164 GLN n 1 165 ARG n 1 166 SER n 1 167 ASP n 1 168 ASP n 1 169 ASN n 1 170 ALA n 1 171 ASP n 1 172 ALA n 1 173 LEU n 1 174 LYS n 1 175 LYS n 1 176 ARG n 1 177 LEU n 1 178 ALA n 1 179 ALA n 1 180 TYR n 1 181 HIS n 1 182 ALA n 1 183 GLN n 1 184 THR n 1 185 GLU n 1 186 PRO n 1 187 ILE n 1 188 VAL n 1 189 ASP n 1 190 PHE n 1 191 TYR n 1 192 LYS n 1 193 LYS n 1 194 THR n 1 195 GLY n 1 196 ILE n 1 197 TRP n 1 198 ALA n 1 199 GLY n 1 200 VAL n 1 201 ASP n 1 202 ALA n 1 203 SER n 1 204 GLN n 1 205 PRO n 1 206 PRO n 1 207 ALA n 1 208 THR n 1 209 VAL n 1 210 TRP n 1 211 ALA n 1 212 ASP n 1 213 ILE n 1 214 LEU n 1 215 ASN n 1 216 LYS n 1 217 LEU n 1 218 GLY n 1 219 LYS n 1 220 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;baker's yeast ; _entity_src_gen.gene_src_genus Saccharomyces _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'FALA STRASBOURG' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location CYTOSOL _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KAD1_YEAST _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P07170 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MSSSESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVT GEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGKD ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1AKY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 219 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P07170 _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 221 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 219 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AP5 non-polymer . "BIS(ADENOSINE)-5'-PENTAPHOSPHATE" ? 'C20 H29 N10 O22 P5' 916.367 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1AKY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_percent_sol 46.08 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'SIEMENS-NICOLET X100' _diffrn_detector.pdbx_collection_date 1990 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AKY _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.63 _reflns.number_obs 27634 _reflns.number_all ? _reflns.percent_possible_obs 98. _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.8 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1AKY _refine.ls_number_reflns_obs 25745 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10. _refine.ls_d_res_high 1.63 _refine.ls_percent_reflns_obs 97.4 _refine.ls_R_factor_obs 0.194 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.194 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 35. _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1AKY _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2055 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 72 _refine_hist.number_atoms_solvent 393 _refine_hist.number_atoms_total 2520 _refine_hist.d_res_high 1.63 _refine_hist.d_res_low 10. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.29 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.5 ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.0 ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 3.5 ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 5.0 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1AKY _struct.title 'HIGH-RESOLUTION STRUCTURES OF ADENYLATE KINASE FROM YEAST LIGATED WITH INHIBITOR AP5A, SHOWING THE PATHWAY OF PHOSPHORYL TRANSFER' _struct.pdbx_descriptor ;ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, IMIDAZOLE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AKY _struct_keywords.pdbx_keywords 'TRANSFERASE (PHOSPHOTRANSFERASE)' _struct_keywords.text 'ATP:AMP PHOSPHOTRANSFERASE, MYOKINASE, TRANSFERASE (PHOSPHOTRANSFERASE)' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 17 ? PHE A 28 ? LYS A 17 PHE A 28 1 ? 12 HELX_P HELX_P2 2 THR A 35 ? ALA A 44 ? THR A 35 ALA A 44 1 ? 10 HELX_P HELX_P3 3 GLN A 48 ? ASP A 58 ? GLN A 48 ASP A 58 1 ? 11 HELX_P HELX_P4 4 ASP A 65 ? ASN A 78 ? ASP A 65 ASN A 78 1 ? 14 HELX_P HELX_P5 5 PRO A 80 ? LYS A 83 ? PRO A 80 LYS A 83 5 ? 4 HELX_P HELX_P6 6 ILE A 95 ? GLN A 108 ? ILE A 95 GLN A 108 1 ? 14 HELX_P HELX_P7 7 ASP A 122 ? THR A 130 ? ASP A 122 THR A 130 1 ? 9 HELX_P HELX_P8 8 ALA A 170 ? GLN A 183 ? ALA A 170 GLN A 183 1 ? 14 HELX_P HELX_P9 9 GLU A 185 ? THR A 194 ? GLU A 185 THR A 194 5 ? 10 HELX_P HELX_P10 10 PRO A 206 ? LEU A 217 ? PRO A 206 LEU A 217 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 91 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 91 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 92 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 92 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.16 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 197 ? ASP A 201 ? TRP A 197 ASP A 201 A 2 LYS A 114 ? LYS A 119 ? LYS A 114 LYS A 119 A 3 ARG A 6 ? GLY A 11 ? ARG A 6 GLY A 11 A 4 PHE A 86 ? ASP A 89 ? PHE A 86 ASP A 89 A 5 ALA A 31 ? ALA A 34 ? ALA A 31 ALA A 34 B 1 ARG A 132 ? ILE A 134 ? ARG A 132 ILE A 134 B 2 SER A 141 ? HIS A 143 ? SER A 141 HIS A 143 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 198 ? O ALA A 198 N ALA A 115 ? N ALA A 115 A 2 3 O LYS A 114 ? O LYS A 114 N VAL A 8 ? N VAL A 8 A 3 4 O MET A 7 ? O MET A 7 N PHE A 86 ? N PHE A 86 A 4 5 O ILE A 87 ? O ILE A 87 N ALA A 31 ? N ALA A 31 B 1 2 O LEU A 133 ? O LEU A 133 N TYR A 142 ? N TYR A 142 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 39 'BINDING SITE FOR RESIDUE AP5 A 301' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE IMD A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 39 PRO A 13 ? PRO A 13 . ? 1_555 ? 2 AC1 39 GLY A 14 ? GLY A 14 . ? 1_555 ? 3 AC1 39 ALA A 15 ? ALA A 15 . ? 1_555 ? 4 AC1 39 GLY A 16 ? GLY A 16 . ? 1_555 ? 5 AC1 39 LYS A 17 ? LYS A 17 . ? 1_555 ? 6 AC1 39 GLY A 18 ? GLY A 18 . ? 1_555 ? 7 AC1 39 THR A 19 ? THR A 19 . ? 1_555 ? 8 AC1 39 THR A 35 ? THR A 35 . ? 1_555 ? 9 AC1 39 GLY A 36 ? GLY A 36 . ? 1_555 ? 10 AC1 39 ARG A 40 ? ARG A 40 . ? 1_555 ? 11 AC1 39 MET A 57 ? MET A 57 . ? 1_555 ? 12 AC1 39 GLY A 61 ? GLY A 61 . ? 1_555 ? 13 AC1 39 VAL A 63 ? VAL A 63 . ? 1_555 ? 14 AC1 39 MET A 68 ? MET A 68 . ? 1_555 ? 15 AC1 39 GLY A 90 ? GLY A 90 . ? 1_555 ? 16 AC1 39 PHE A 91 ? PHE A 91 . ? 1_555 ? 17 AC1 39 ARG A 93 ? ARG A 93 . ? 1_555 ? 18 AC1 39 GLN A 97 ? GLN A 97 . ? 1_555 ? 19 AC1 39 ARG A 128 ? ARG A 128 . ? 1_555 ? 20 AC1 39 ARG A 132 ? ARG A 132 . ? 1_555 ? 21 AC1 39 SER A 141 ? SER A 141 . ? 1_555 ? 22 AC1 39 TYR A 142 ? TYR A 142 . ? 1_555 ? 23 AC1 39 HIS A 143 ? HIS A 143 . ? 1_555 ? 24 AC1 39 ASN A 147 ? ASN A 147 . ? 1_555 ? 25 AC1 39 ARG A 165 ? ARG A 165 . ? 1_555 ? 26 AC1 39 ARG A 176 ? ARG A 176 . ? 1_555 ? 27 AC1 39 GLN A 204 ? GLN A 204 . ? 1_555 ? 28 AC1 39 PRO A 205 ? PRO A 205 . ? 1_555 ? 29 AC1 39 PRO A 206 ? PRO A 206 . ? 1_555 ? 30 AC1 39 IMD C . ? IMD A 302 . ? 1_555 ? 31 AC1 39 HOH D . ? HOH A 501 . ? 1_555 ? 32 AC1 39 HOH D . ? HOH A 505 . ? 1_555 ? 33 AC1 39 HOH D . ? HOH A 509 . ? 1_555 ? 34 AC1 39 HOH D . ? HOH A 511 . ? 1_555 ? 35 AC1 39 HOH D . ? HOH A 528 . ? 1_555 ? 36 AC1 39 HOH D . ? HOH A 530 . ? 1_555 ? 37 AC1 39 HOH D . ? HOH A 540 . ? 1_555 ? 38 AC1 39 HOH D . ? HOH A 550 . ? 1_555 ? 39 AC1 39 HOH D . ? HOH A 575 . ? 1_555 ? 40 AC2 6 GLY A 18 ? GLY A 18 . ? 1_555 ? 41 AC2 6 ASP A 37 ? ASP A 37 . ? 1_555 ? 42 AC2 6 ARG A 40 ? ARG A 40 . ? 1_555 ? 43 AC2 6 ASP A 89 ? ASP A 89 . ? 1_555 ? 44 AC2 6 AP5 B . ? AP5 A 301 . ? 1_555 ? 45 AC2 6 HOH D . ? HOH A 530 . ? 1_555 ? # _database_PDB_matrix.entry_id 1AKY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1AKY _atom_sites.fract_transf_matrix[1][1] 0.027548 _atom_sites.fract_transf_matrix[1][2] -0.013855 _atom_sites.fract_transf_matrix[1][3] 0.006254 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027638 _atom_sites.fract_transf_matrix[2][3] 0.007052 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023884 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'CIS PROLINE - PRO 92' # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 MET 7 7 7 MET MET A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 HIS 29 29 29 HIS HIS A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 MET 57 57 57 MET MET A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 MET 71 71 71 MET MET A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 CYS 82 82 82 CYS CYS A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 GLN 97 97 97 GLN GLN A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 MET 104 104 104 MET MET A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 ARG 132 132 132 ARG ARG A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 HIS 135 135 135 HIS HIS A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 TYR 142 142 142 TYR TYR A . n A 1 143 HIS 143 143 143 HIS HIS A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 ILE 145 145 145 ILE ILE A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 ASN 147 147 147 ASN ASN A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 PRO 149 149 149 PRO PRO A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 ASP 152 152 152 ASP ASP A . n A 1 153 MET 153 153 153 MET MET A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 ASP 155 155 155 ASP ASP A . n A 1 156 ASP 156 156 156 ASP ASP A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 THR 158 158 158 THR THR A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 GLU 160 160 160 GLU GLU A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 GLN 164 164 164 GLN GLN A . n A 1 165 ARG 165 165 165 ARG ARG A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 ASN 169 169 169 ASN ASN A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 ASP 171 171 171 ASP ASP A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 LYS 175 175 175 LYS LYS A . n A 1 176 ARG 176 176 176 ARG ARG A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 TYR 180 180 180 TYR TYR A . n A 1 181 HIS 181 181 181 HIS HIS A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 GLN 183 183 183 GLN GLN A . n A 1 184 THR 184 184 184 THR THR A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 PRO 186 186 186 PRO PRO A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 VAL 188 188 188 VAL VAL A . n A 1 189 ASP 189 189 189 ASP ASP A . n A 1 190 PHE 190 190 190 PHE PHE A . n A 1 191 TYR 191 191 191 TYR TYR A . n A 1 192 LYS 192 192 192 LYS LYS A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 THR 194 194 194 THR THR A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 ILE 196 196 196 ILE ILE A . n A 1 197 TRP 197 197 197 TRP TRP A . n A 1 198 ALA 198 198 198 ALA ALA A . n A 1 199 GLY 199 199 199 GLY GLY A . n A 1 200 VAL 200 200 200 VAL VAL A . n A 1 201 ASP 201 201 201 ASP ASP A . n A 1 202 ALA 202 202 202 ALA ALA A . n A 1 203 SER 203 203 203 SER SER A . n A 1 204 GLN 204 204 204 GLN GLN A . n A 1 205 PRO 205 205 205 PRO PRO A . n A 1 206 PRO 206 206 206 PRO PRO A . n A 1 207 ALA 207 207 207 ALA ALA A . n A 1 208 THR 208 208 208 THR THR A . n A 1 209 VAL 209 209 209 VAL VAL A . n A 1 210 TRP 210 210 210 TRP TRP A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 ASP 212 212 212 ASP ASP A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 ASN 215 215 215 ASN ASN A . n A 1 216 LYS 216 216 216 LYS LYS A . n A 1 217 LEU 217 217 217 LEU LEU A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 LYS 219 219 219 LYS LYS A . n A 1 220 ASN 220 220 220 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AP5 1 301 301 AP5 AP5 A . C 3 IMD 1 302 302 IMD IMD A . D 4 HOH 1 501 501 HOH HOH A . D 4 HOH 2 502 502 HOH HOH A . D 4 HOH 3 503 503 HOH HOH A . D 4 HOH 4 504 504 HOH HOH A . D 4 HOH 5 505 505 HOH HOH A . D 4 HOH 6 506 506 HOH HOH A . D 4 HOH 7 507 507 HOH HOH A . D 4 HOH 8 508 508 HOH HOH A . D 4 HOH 9 509 509 HOH HOH A . D 4 HOH 10 510 510 HOH HOH A . D 4 HOH 11 511 511 HOH HOH A . D 4 HOH 12 512 512 HOH HOH A . D 4 HOH 13 513 513 HOH HOH A . D 4 HOH 14 514 514 HOH HOH A . D 4 HOH 15 515 515 HOH HOH A . D 4 HOH 16 516 516 HOH HOH A . D 4 HOH 17 517 517 HOH HOH A . D 4 HOH 18 518 518 HOH HOH A . D 4 HOH 19 519 519 HOH HOH A . D 4 HOH 20 520 520 HOH HOH A . D 4 HOH 21 521 521 HOH HOH A . D 4 HOH 22 522 522 HOH HOH A . D 4 HOH 23 523 523 HOH HOH A . D 4 HOH 24 524 524 HOH HOH A . D 4 HOH 25 525 525 HOH HOH A . D 4 HOH 26 526 526 HOH HOH A . D 4 HOH 27 527 527 HOH HOH A . D 4 HOH 28 528 528 HOH HOH A . D 4 HOH 29 529 529 HOH HOH A . D 4 HOH 30 530 530 HOH HOH A . D 4 HOH 31 531 531 HOH HOH A . D 4 HOH 32 532 532 HOH HOH A . D 4 HOH 33 533 533 HOH HOH A . D 4 HOH 34 534 534 HOH HOH A . D 4 HOH 35 535 535 HOH HOH A . D 4 HOH 36 536 536 HOH HOH A . D 4 HOH 37 537 537 HOH HOH A . D 4 HOH 38 538 538 HOH HOH A . D 4 HOH 39 539 539 HOH HOH A . D 4 HOH 40 540 540 HOH HOH A . D 4 HOH 41 541 541 HOH HOH A . D 4 HOH 42 542 542 HOH HOH A . D 4 HOH 43 543 543 HOH HOH A . D 4 HOH 44 544 544 HOH HOH A . D 4 HOH 45 545 545 HOH HOH A . D 4 HOH 46 546 546 HOH HOH A . D 4 HOH 47 547 547 HOH HOH A . D 4 HOH 48 548 548 HOH HOH A . D 4 HOH 49 549 549 HOH HOH A . D 4 HOH 50 550 550 HOH HOH A . D 4 HOH 51 551 551 HOH HOH A . D 4 HOH 52 552 552 HOH HOH A . D 4 HOH 53 553 553 HOH HOH A . D 4 HOH 54 554 554 HOH HOH A . D 4 HOH 55 555 555 HOH HOH A . D 4 HOH 56 556 556 HOH HOH A . D 4 HOH 57 557 557 HOH HOH A . D 4 HOH 58 558 558 HOH HOH A . D 4 HOH 59 559 559 HOH HOH A . D 4 HOH 60 560 560 HOH HOH A . D 4 HOH 61 561 561 HOH HOH A . D 4 HOH 62 562 562 HOH HOH A . D 4 HOH 63 563 563 HOH HOH A . D 4 HOH 64 564 564 HOH HOH A . D 4 HOH 65 565 565 HOH HOH A . D 4 HOH 66 566 566 HOH HOH A . D 4 HOH 67 567 567 HOH HOH A . D 4 HOH 68 568 568 HOH HOH A . D 4 HOH 69 569 569 HOH HOH A . D 4 HOH 70 570 570 HOH HOH A . D 4 HOH 71 571 571 HOH HOH A . D 4 HOH 72 572 572 HOH HOH A . D 4 HOH 73 573 573 HOH HOH A . D 4 HOH 74 574 574 HOH HOH A . D 4 HOH 75 575 575 HOH HOH A . D 4 HOH 76 576 576 HOH HOH A . D 4 HOH 77 577 577 HOH HOH A . D 4 HOH 78 578 578 HOH HOH A . D 4 HOH 79 579 579 HOH HOH A . D 4 HOH 80 580 580 HOH HOH A . D 4 HOH 81 581 581 HOH HOH A . D 4 HOH 82 582 582 HOH HOH A . D 4 HOH 83 583 583 HOH HOH A . D 4 HOH 84 584 584 HOH HOH A . D 4 HOH 85 585 585 HOH HOH A . D 4 HOH 86 586 586 HOH HOH A . D 4 HOH 87 587 587 HOH HOH A . D 4 HOH 88 588 588 HOH HOH A . D 4 HOH 89 589 589 HOH HOH A . D 4 HOH 90 590 590 HOH HOH A . D 4 HOH 91 591 591 HOH HOH A . D 4 HOH 92 592 592 HOH HOH A . D 4 HOH 93 593 593 HOH HOH A . D 4 HOH 94 594 594 HOH HOH A . D 4 HOH 95 595 595 HOH HOH A . D 4 HOH 96 596 596 HOH HOH A . D 4 HOH 97 597 597 HOH HOH A . D 4 HOH 98 598 598 HOH HOH A . D 4 HOH 99 599 599 HOH HOH A . D 4 HOH 100 600 600 HOH HOH A . D 4 HOH 101 601 601 HOH HOH A . D 4 HOH 102 602 602 HOH HOH A . D 4 HOH 103 603 603 HOH HOH A . D 4 HOH 104 604 604 HOH HOH A . D 4 HOH 105 605 605 HOH HOH A . D 4 HOH 106 606 606 HOH HOH A . D 4 HOH 107 607 607 HOH HOH A . D 4 HOH 108 608 608 HOH HOH A . D 4 HOH 109 609 609 HOH HOH A . D 4 HOH 110 610 610 HOH HOH A . D 4 HOH 111 611 611 HOH HOH A . D 4 HOH 112 612 612 HOH HOH A . D 4 HOH 113 613 613 HOH HOH A . D 4 HOH 114 614 614 HOH HOH A . D 4 HOH 115 615 615 HOH HOH A . D 4 HOH 116 616 616 HOH HOH A . D 4 HOH 117 617 617 HOH HOH A . D 4 HOH 118 618 618 HOH HOH A . D 4 HOH 119 619 619 HOH HOH A . D 4 HOH 120 620 620 HOH HOH A . D 4 HOH 121 621 621 HOH HOH A . D 4 HOH 122 622 622 HOH HOH A . D 4 HOH 123 623 623 HOH HOH A . D 4 HOH 124 624 624 HOH HOH A . D 4 HOH 125 625 625 HOH HOH A . D 4 HOH 126 626 626 HOH HOH A . D 4 HOH 127 627 627 HOH HOH A . D 4 HOH 128 628 628 HOH HOH A . D 4 HOH 129 629 629 HOH HOH A . D 4 HOH 130 630 630 HOH HOH A . D 4 HOH 131 631 631 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-11-14 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 XDS 'data reduction' . ? 3 SYNDUC 'data reduction' . ? 4 X-PLOR phasing 3.1 ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H1 A HOH 506 ? ? H2 A HOH 513 ? ? 0.74 2 1 H2 A HOH 613 ? ? H2 A HOH 620 ? ? 0.87 3 1 HE21 A GLN 48 ? ? H2 A HOH 582 ? ? 0.91 4 1 H2 A HOH 502 ? ? H1 A HOH 507 ? ? 0.96 5 1 H2 A HOH 509 ? ? H2 A HOH 522 ? ? 0.97 6 1 H A ASP 122 ? ? H1 A HOH 614 ? ? 1.00 7 1 H2 A HOH 611 ? ? H1 A HOH 616 ? ? 1.01 8 1 H1 A HOH 508 ? ? H1 A HOH 559 ? ? 1.11 9 1 HG A SER 64 ? ? H2 A HOH 516 ? ? 1.12 10 1 H1 A HOH 536 ? ? H2 A HOH 560 ? ? 1.15 11 1 H2 A HOH 561 ? ? H1 A HOH 625 ? ? 1.16 12 1 HE21 A GLN 25 ? ? H1 A HOH 619 ? ? 1.16 13 1 H A GLY 11 ? ? H2 A HOH 506 ? ? 1.26 14 1 HD1 A HIS 143 ? ? H A PHE 146 ? ? 1.27 15 1 HG A SER 138 ? ? H A ARG 140 ? ? 1.29 16 1 HG1 A THR 19 ? ? H2 A HOH 528 ? ? 1.30 17 1 H2 A HOH 515 ? ? H1 A HOH 605 ? ? 1.30 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 138 ? ? -151.71 -48.85 2 1 ARG A 140 ? ? -34.58 110.32 3 1 ASN A 147 ? ? -159.52 63.71 4 1 MET A 153 ? ? 59.20 17.76 5 1 LYS A 219 ? ? -120.18 -68.38 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1 ? A SER 1 2 1 Y 1 A SER 2 ? A SER 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "BIS(ADENOSINE)-5'-PENTAPHOSPHATE" AP5 3 IMIDAZOLE IMD 4 water HOH #