data_1ALX # _entry.id 1ALX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ALX pdb_00001alx 10.2210/pdb1alx/pdb WWPDB D_1000170980 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1TK2 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN S COMPLEXED WITH ALKALINE PROTEINASE SAVINASE' PDB 2XDC unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A FROM CRYSTALS GROWN IN A LIPID CUBIC PHASE.' PDB 1AV2 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE' PDB 1BDW unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A FROM BACILLUS BREVIS' PDB 1C4D unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE' PDB 1GMK unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLRXED WITH POTASSIUM THIOCYANATE' PDB 1GRM unspecified 'SOLUTION STRUCTURE OF THE GRAMICIDIN A' PDB 1JNO unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES' PDB 1KQE unspecified 'SOLUTION STRUCTURE OF A LINKED SHORTENED GRAMICIDIN A IN BENZENE/ACETONE 10:1' PDB 1MAG unspecified 'SOLID STATE NMR STRUCTURE OF GRAMICIDIN A IN HYDRATED DMPC BILAYERS,' PDB 1MIC unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN METHANOL IN THE PRESENCE OF CACL' PDB 1NG8 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A (W15G) IN SODIUM DODECYL SULFATE MICELLES' PDB 1NRM unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES' PDB 1NRU unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES IN THE PRESENCE OF EXCESS NA+' PDB 1NT5 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A (V1F) IN SODIUM DODECYL SULFATE MICELLES' PDB 1JO3 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN B IN SODIUM DODECYL SULFATE MICELLES' PDB 1JO4 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES' PDB 1NT6 unspecified 'SOLUTION STRUCTURE OF F1-GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES' PDB 1TKQ unspecified 'SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN A IN A MEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE, IN THE PRESENCE OF CSCL' PDB 1W5U unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL' PDB 2IZQ unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH KI IN METHANOL' PDB 3L8L unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH NAI' PDB 1AL4 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN N-PROPANOL' PDB 1ALZ unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ALX _pdbx_database_status.recvd_initial_deposition_date 1997-06-05 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Burkhart, B.M.' 1 'Langs, D.A.' 2 'Smith, G.D.' 3 'Courseille, C.' 4 'Precigoux, G.' 5 'Hospital, M.' 6 'Pangborn, W.A.' 7 'Duax, W.L.' 8 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Heterodimer Formation and Crystal Nucleation of Gramicidin D' Biophys.J. 75 2135 ? 1998 BIOJAU US 0006-3495 0030 ? 9788907 '10.1016/S0006-3495(98)77656-8' 1 ;Monoclinic Uncomplexed Double-Stranded, Antiparallel, Left-Handed Beta 5.6-Helix (Increases Decreases Beta 5.6) Structure of Gramicidin A: Alternate Patterns of Helical Association and Deformation ; Proc.Natl.Acad.Sci.USA 88 5345 ? 1991 PNASA6 US 0027-8424 0040 ? 1711230 10.1073/PNAS.88.12.5345 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Burkhart, B.M.' 1 ? primary 'Gassman, R.M.' 2 ? primary 'Langs, D.A.' 3 ? primary 'Pangborn, W.A.' 4 ? primary 'Duax, W.L.' 5 ? 1 'Langs, D.A.' 6 ? 1 'Smith, G.D.' 7 ? 1 'Courseille, C.' 8 ? 1 'Precigoux, G.' 9 ? 1 'Hospital, M.' 10 ? # _cell.entry_id 1ALX _cell.length_a 14.907 _cell.length_b 26.014 _cell.length_c 31.911 _cell.angle_alpha 90.00 _cell.angle_beta 92.03 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1ALX _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'GRAMICIDIN A' 1859.258 1 ? ? ? ? 2 polymer nat 'GRAMICIDIN A' 1882.294 1 ? ? ? ? 3 non-polymer syn METHANOL 32.042 20 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'VALYL GRAMICIDIN' 2 'VALYL GRAMICIDIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(FVA)GA(DLE)A(DVA)V(DVA)W(DLE)Y(DLE)W(DLE)W(ETA)' VGALAVVVWLYLWLWX A ? 2 'polypeptide(L)' no yes '(FVA)GA(DLE)A(DVA)V(DVA)W(DLE)W(DLE)W(DLE)W(ETA)' VGALAVVVWLWLWLWX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 FVA n 1 2 GLY n 1 3 ALA n 1 4 DLE n 1 5 ALA n 1 6 DVA n 1 7 VAL n 1 8 DVA n 1 9 TRP n 1 10 DLE n 1 11 TYR y 1 11 TRP y 1 12 DLE n 1 13 TRP n 1 14 DLE n 1 15 TRP n 1 16 ETA n 2 1 FVA n 2 2 GLY n 2 3 ALA n 2 4 DLE n 2 5 ALA n 2 6 DVA n 2 7 VAL n 2 8 DVA n 2 9 TRP n 2 10 DLE n 2 11 TRP n 2 12 DLE n 2 13 TRP n 2 14 DLE n 2 15 TRP n 2 16 ETA n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'BREVIBACILLUS BREVIS' 1393 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'BREVIBACILLUS BREVIS' 1393 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 NOR NOR00243 1 ? ? NOR00243 ? 2 NOR NOR00243 2 ? ? NOR00243 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ALX A 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 2 2 1ALX B 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1ALX _struct_ref_seq_dif.mon_id TYR _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 11 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name NOR _struct_ref_seq_dif.pdbx_seq_db_accession_code NOR00243 _struct_ref_seq_dif.db_mon_id TRP _struct_ref_seq_dif.pdbx_seq_db_seq_num 11 _struct_ref_seq_dif.details microheterogeneity _struct_ref_seq_dif.pdbx_auth_seq_num 11 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 ETA 'L-peptide COOH carboxy terminus' . ETHANOLAMINE ? 'C2 H7 N O' 61.083 FVA 'L-peptide linking' n N-formyl-L-valine ? 'C6 H11 N O3' 145.156 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 MOH non-polymer . METHANOL ? 'C H4 O' 32.042 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ALX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.65 _exptl_crystal.density_percent_sol 25.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'CRYSTALLIZED BY BATCH METHODS FROM A SATURATED SOLUTION OF GRAMICIDIN D IN METHANOL., PH 7.0, BATCH METHOD' # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'ENRAF-NONIUS FAST' _diffrn_detector.pdbx_collection_date 1990-01 _diffrn_detector.details COLLIMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRAPHITE(002)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1ALX _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100.000 _reflns.d_resolution_high 1.250 _reflns.number_obs 7726 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 85.4100 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.000 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.20 _reflns_shell.d_res_low 1.24 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 35.530 _reflns_shell.pdbx_redundancy 1.00 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1ALX _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 7726 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 100.00 _refine.ls_d_res_high 1.20 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.100 _refine.ls_R_factor_all 0.102 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.168 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 376 _refine.ls_number_parameters 3422 _refine.ls_number_restraints 5704 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER (G = 0.12792 U = 0.82322)' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1GMA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case 'MODIFIED ENGH AND HUBER FOR ETHANOLAMINE BASED ON SERINE' _refine.pdbx_R_Free_selection_details '5% OF REFLECTIONS IN THIN RESOLUTION SHELLS.' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1ALX _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 5 _refine_analyze.occupancy_sum_hydrogen 367.54 _refine_analyze.occupancy_sum_non_hydrogen 315.41 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 284 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 324 _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 100.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.031 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.326 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.167 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.119 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.033 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.045 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1ALX _pdbx_refine.R_factor_all_no_cutoff 0.102 _pdbx_refine.R_factor_obs_no_cutoff 0.100 _pdbx_refine.free_R_factor_no_cutoff 0.168 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.000 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 376 _pdbx_refine.R_factor_all_4sig_cutoff 0.102 _pdbx_refine.R_factor_obs_4sig_cutoff 0.100 _pdbx_refine.free_R_factor_4sig_cutoff 0.168 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.000 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 376 _pdbx_refine.number_reflns_obs_4sig_cutoff 7726 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] 0.968610 _struct_ncs_oper.matrix[1][2] 0.175300 _struct_ncs_oper.matrix[1][3] -0.176240 _struct_ncs_oper.matrix[2][1] 0.178140 _struct_ncs_oper.matrix[2][2] -0.984010 _struct_ncs_oper.matrix[2][3] 0.000300 _struct_ncs_oper.matrix[3][1] -0.173370 _struct_ncs_oper.matrix[3][2] -0.031690 _struct_ncs_oper.matrix[3][3] -0.984350 _struct_ncs_oper.vector[1] -0.39000 _struct_ncs_oper.vector[2] -1.54000 _struct_ncs_oper.vector[3] -6.71000 # _struct.entry_id 1ALX _struct.title 'GRAMICIDIN D FROM BACILLUS BREVIS (METHANOL SOLVATE)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ALX _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ANTIBIOTIC, GRAMICIDIN, ANTIFUNGAL, ANTIBACTERIAL, ABTIBIOTIC, MEMBRANE ION CHANNEL, LINEAR GRAMICIDIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 3 ? U N N 3 ? V N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A FVA 1 C ? ? ? 1_555 A GLY 2 N ? ? A FVA 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.295 ? ? covale2 covale both ? A ALA 3 C ? ? ? 1_555 A DLE 4 N ? ? A ALA 3 A DLE 4 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale3 covale both ? A DLE 4 C ? ? ? 1_555 A ALA 5 N ? ? A DLE 4 A ALA 5 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale4 covale both ? A ALA 5 C ? ? ? 1_555 A DVA 6 N ? ? A ALA 5 A DVA 6 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale5 covale both ? A DVA 6 C ? ? ? 1_555 A VAL 7 N ? ? A DVA 6 A VAL 7 1_555 ? ? ? ? ? ? ? 1.303 ? ? covale6 covale both ? A VAL 7 C ? ? ? 1_555 A DVA 8 N ? ? A VAL 7 A DVA 8 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale7 covale both ? A DVA 8 C ? ? ? 1_555 A TRP 9 N ? ? A DVA 8 A TRP 9 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale8 covale both ? A TRP 9 C ? ? ? 1_555 A DLE 10 N ? ? A TRP 9 A DLE 10 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? A DLE 10 C ? ? ? 1_555 A TRP 11 N B ? A DLE 10 A TRP 11 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale10 covale both ? A DLE 10 C ? ? ? 1_555 A TYR 11 N A ? A DLE 10 A TYR 11 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale11 covale both ? A TYR 11 C A ? ? 1_555 A DLE 12 N ? ? A TYR 11 A DLE 12 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale12 covale both ? A TRP 11 C B ? ? 1_555 A DLE 12 N ? ? A TRP 11 A DLE 12 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale13 covale both ? A DLE 12 C ? ? ? 1_555 A TRP 13 N ? ? A DLE 12 A TRP 13 1_555 ? ? ? ? ? ? ? 1.280 ? ? covale14 covale both ? A TRP 13 C ? ? ? 1_555 A DLE 14 N ? ? A TRP 13 A DLE 14 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale15 covale both ? A DLE 14 C ? ? ? 1_555 A TRP 15 N ? ? A DLE 14 A TRP 15 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale16 covale both ? A TRP 15 C ? ? ? 1_555 A ETA 16 N A ? A TRP 15 A ETA 16 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale17 covale both ? A TRP 15 C ? ? ? 1_555 A ETA 16 N C ? A TRP 15 A ETA 16 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale18 covale both ? A TRP 15 C ? ? ? 1_555 A ETA 16 N B ? A TRP 15 A ETA 16 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale19 covale both ? B FVA 1 C ? ? ? 1_555 B GLY 2 N ? ? B FVA 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale20 covale both ? B ALA 3 C ? ? ? 1_555 B DLE 4 N ? ? B ALA 3 B DLE 4 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale21 covale both ? B DLE 4 C ? ? ? 1_555 B ALA 5 N ? ? B DLE 4 B ALA 5 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale22 covale both ? B ALA 5 C ? ? ? 1_555 B DVA 6 N ? ? B ALA 5 B DVA 6 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale23 covale both ? B DVA 6 C ? ? ? 1_555 B VAL 7 N ? ? B DVA 6 B VAL 7 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale24 covale both ? B VAL 7 C ? ? ? 1_555 B DVA 8 N ? ? B VAL 7 B DVA 8 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale25 covale both ? B DVA 8 C ? ? ? 1_555 B TRP 9 N ? ? B DVA 8 B TRP 9 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale26 covale both ? B TRP 9 C ? ? ? 1_555 B DLE 10 N ? ? B TRP 9 B DLE 10 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale27 covale both ? B DLE 10 C ? ? ? 1_555 B TRP 11 N ? ? B DLE 10 B TRP 11 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale28 covale both ? B TRP 11 C ? ? ? 1_555 B DLE 12 N ? ? B TRP 11 B DLE 12 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale29 covale both ? B DLE 12 C ? ? ? 1_555 B TRP 13 N ? ? B DLE 12 B TRP 13 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale30 covale both ? B TRP 13 C ? ? ? 1_555 B DLE 14 N ? ? B TRP 13 B DLE 14 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale31 covale both ? B DLE 14 C ? ? ? 1_555 B TRP 15 N ? ? B DLE 14 B TRP 15 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale32 covale both ? B TRP 15 C ? ? ? 1_555 B ETA 16 N B ? B TRP 15 B ETA 16 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale33 covale both ? B TRP 15 C ? ? ? 1_555 B ETA 16 N C ? B TRP 15 B ETA 16 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale34 covale both ? B TRP 15 C ? ? ? 1_555 B ETA 16 N A ? B TRP 15 B ETA 16 1_555 ? ? ? ? ? ? ? 1.340 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 2 ? DLE A 14 ? GLY A 2 DLE A 14 AA 2 GLY B 2 ? DLE B 14 ? GLY B 2 DLE B 14 # _pdbx_struct_sheet_hbond.sheet_id AA _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id TRP _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 13 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id TRP _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 13 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ALA _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 3 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ALA _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 3 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 19 'BINDING SITE FOR CHAIN A OF GRAMICIDIN A' AC2 Software ? ? ? ? 21 'BINDING SITE FOR CHAIN B OF GRAMICIDIN A' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 GLY B 2 ? GLY B 2 . ? 1_554 ? 2 AC1 19 GLY B 2 ? GLY B 2 . ? 1_555 ? 3 AC1 19 ALA B 3 ? ALA B 3 . ? 1_555 ? 4 AC1 19 DLE B 4 ? DLE B 4 . ? 1_555 ? 5 AC1 19 ALA B 5 ? ALA B 5 . ? 1_555 ? 6 AC1 19 DVA B 6 ? DVA B 6 . ? 1_555 ? 7 AC1 19 VAL B 7 ? VAL B 7 . ? 1_555 ? 8 AC1 19 DVA B 8 ? DVA B 8 . ? 1_555 ? 9 AC1 19 TRP B 9 ? TRP B 9 . ? 1_555 ? 10 AC1 19 DLE B 10 ? DLE B 10 . ? 1_455 ? 11 AC1 19 DLE B 10 ? DLE B 10 . ? 1_555 ? 12 AC1 19 TRP B 11 ? TRP B 11 . ? 1_555 ? 13 AC1 19 DLE B 12 ? DLE B 12 . ? 1_555 ? 14 AC1 19 TRP B 13 ? TRP B 13 . ? 1_655 ? 15 AC1 19 TRP B 13 ? TRP B 13 . ? 1_555 ? 16 AC1 19 DLE B 14 ? DLE B 14 . ? 1_555 ? 17 AC1 19 TRP B 15 ? TRP B 15 . ? 1_555 ? 18 AC1 19 ETA B 16 ? ETA B 16 . ? 1_556 ? 19 AC1 19 ETA B 16 ? ETA B 16 . ? 1_555 ? 20 AC2 21 GLY A 2 ? GLY A 2 . ? 1_556 ? 21 AC2 21 GLY A 2 ? GLY A 2 . ? 1_555 ? 22 AC2 21 ALA A 3 ? ALA A 3 . ? 1_556 ? 23 AC2 21 ALA A 3 ? ALA A 3 . ? 1_555 ? 24 AC2 21 DLE A 4 ? DLE A 4 . ? 1_556 ? 25 AC2 21 DLE A 4 ? DLE A 4 . ? 1_555 ? 26 AC2 21 ALA A 5 ? ALA A 5 . ? 1_455 ? 27 AC2 21 ALA A 5 ? ALA A 5 . ? 1_555 ? 28 AC2 21 DVA A 6 ? DVA A 6 . ? 1_555 ? 29 AC2 21 VAL A 7 ? VAL A 7 . ? 1_555 ? 30 AC2 21 VAL A 7 ? VAL A 7 . ? 1_655 ? 31 AC2 21 DVA A 8 ? DVA A 8 . ? 1_555 ? 32 AC2 21 TRP A 9 ? TRP A 9 . ? 1_555 ? 33 AC2 21 DLE A 10 ? DLE A 10 . ? 1_555 ? 34 AC2 21 TYR A 11 ? TYR A 11 . ? 1_555 ? 35 AC2 21 DLE A 12 ? DLE A 12 . ? 1_555 ? 36 AC2 21 TRP A 13 ? TRP A 13 . ? 1_555 ? 37 AC2 21 DLE A 14 ? DLE A 14 . ? 1_555 ? 38 AC2 21 TRP A 15 ? TRP A 15 . ? 1_555 ? 39 AC2 21 ETA A 16 ? ETA A 16 . ? 1_554 ? 40 AC2 21 ETA A 16 ? ETA A 16 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ALX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ALX _atom_sites.fract_transf_matrix[1][1] 0.067083 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002378 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.038441 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031357 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 FVA 1 1 1 FVA FVA A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 DLE 4 4 4 DLE DLE A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 DVA 6 6 6 DVA DVA A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 DVA 8 8 8 DVA DVA A . n A 1 9 TRP 9 9 9 TRP TRP A . n A 1 10 DLE 10 10 10 DLE DLE A . n A 1 11 TYR 11 11 11 TYR TYR A . y A 1 11 TRP 11 11 11 TRP TRP A . y A 1 12 DLE 12 12 12 DLE DLE A . n A 1 13 TRP 13 13 13 TRP TRP A . n A 1 14 DLE 14 14 14 DLE DLE A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 ETA 16 16 16 ETA ETA A . n B 2 1 FVA 1 1 1 FVA FVA B . n B 2 2 GLY 2 2 2 GLY GLY B . n B 2 3 ALA 3 3 3 ALA ALA B . n B 2 4 DLE 4 4 4 DLE DLE B . n B 2 5 ALA 5 5 5 ALA ALA B . n B 2 6 DVA 6 6 6 DVA DVA B . n B 2 7 VAL 7 7 7 VAL VAL B . n B 2 8 DVA 8 8 8 DVA DVA B . n B 2 9 TRP 9 9 9 TRP TRP B . n B 2 10 DLE 10 10 10 DLE DLE B . n B 2 11 TRP 11 11 11 TRP TRP B . n B 2 12 DLE 12 12 12 DLE DLE B . n B 2 13 TRP 13 13 13 TRP TRP B . n B 2 14 DLE 14 14 14 DLE DLE B . n B 2 15 TRP 15 15 15 TRP TRP B . n B 2 16 ETA 16 16 16 ETA ETA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MOH 1 501 501 MOH MOH A . D 3 MOH 1 502 502 MOH MOH A . E 3 MOH 1 505 505 MOH MOH A . F 3 MOH 1 506 506 MOH MOH A . G 3 MOH 1 508 508 MOH MOH A . H 3 MOH 1 515 515 MOH MOH A . I 3 MOH 1 516 516 MOH MOH A . J 3 MOH 1 518 518 MOH MOH A . K 3 MOH 1 519 519 MOH MOH A . L 3 MOH 1 503 503 MOH MOH B . M 3 MOH 1 504 504 MOH MOH B . N 3 MOH 1 507 507 MOH MOH B . O 3 MOH 1 509 509 MOH MOH B . P 3 MOH 1 510 510 MOH MOH B . Q 3 MOH 1 511 511 MOH MOH B . R 3 MOH 1 512 512 MOH MOH B . S 3 MOH 1 513 513 MOH MOH B . T 3 MOH 1 514 514 MOH MOH B . U 3 MOH 1 517 517 MOH MOH B . V 3 MOH 1 520 520 MOH MOH B . # _pdbx_molecule_features.prd_id PRD_000152 _pdbx_molecule_features.name 'GRAMICIDIN D' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;GRAMICIDIN D IS A HEXADECAMERIC HELICAL PEPTIDE WITH ALTERNATING D,L CHARACTERISTICS. THE N-TERM IS FORMYLATED (RESIDUE 1). THE C-TERM IS CAPPED WITH ETHANOLAMINE (RESIDUE 16). ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000152 A 2 PRD_000152 B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-03-04 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 1 5 2013-02-06 7 'Structure model' 1 6 2018-04-18 8 'Structure model' 1 7 2023-08-02 9 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' 'Derived calculations' 10 7 'Structure model' 'Data collection' 11 7 'Structure model' Other 12 8 'Structure model' 'Database references' 13 8 'Structure model' 'Derived calculations' 14 8 'Structure model' 'Refinement description' 15 9 'Structure model' 'Atomic model' 16 9 'Structure model' 'Data collection' 17 9 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 7 'Structure model' diffrn_detector 2 7 'Structure model' pdbx_database_status 3 8 'Structure model' database_2 4 8 'Structure model' pdbx_initial_refinement_model 5 8 'Structure model' struct_conn 6 8 'Structure model' struct_ref_seq_dif 7 9 'Structure model' atom_site 8 9 'Structure model' atom_site_anisotrop 9 9 'Structure model' chem_comp_atom 10 9 'Structure model' chem_comp_bond 11 9 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 7 'Structure model' '_diffrn_detector.detector' 2 7 'Structure model' '_pdbx_database_status.process_site' 3 8 'Structure model' '_database_2.pdbx_DOI' 4 8 'Structure model' '_database_2.pdbx_database_accession' 5 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 8 'Structure model' '_struct_ref_seq_dif.details' 7 9 'Structure model' '_atom_site.auth_atom_id' 8 9 'Structure model' '_atom_site.label_atom_id' 9 9 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 10 9 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 11 9 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 'model building' . ? 1 SHELXL-97 refinement . ? 2 ENRAF-NONIUS 'data reduction' . ? 3 SHELXL-97 phasing . ? 4 # _pdbx_entry_details.entry_id 1ALX _pdbx_entry_details.compound_details ;GRAMICIDIN IS A HETEROGENEOUS MIXTURE OF SEVERAL COMPOUNDS INCLUDING GRAMICIDIN A, B AND C WHICH ARE OBTAINED FROM BACILLUS BREVIS AND CALLED COLLECTIVELY GRAMICIDIN D. HERE, GRAMICIDIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HE1 A TRP 9 ? ? H1 A MOH 515 ? A 1.31 2 1 HO A MOH 515 ? B O B MOH 504 ? ? 1.52 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 HE1 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 TRP _pdbx_validate_symm_contact.auth_seq_id_1 11 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 HO _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 MOH _pdbx_validate_symm_contact.auth_seq_id_2 519 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 A _pdbx_validate_symm_contact.site_symmetry_2 2_654 _pdbx_validate_symm_contact.dist 1.26 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 13 ? ? -167.58 99.32 2 1 TRP A 15 ? ? -153.59 89.49 3 1 TRP B 11 ? ? -166.98 98.04 4 1 TRP B 15 ? ? -157.95 75.92 5 1 TRP B 15 ? ? -157.95 83.62 6 1 TRP B 15 ? ? -157.95 84.70 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 DLE N N N N 14 DLE CA C N R 15 DLE CB C N N 16 DLE CG C N N 17 DLE CD1 C N N 18 DLE CD2 C N N 19 DLE C C N N 20 DLE O O N N 21 DLE OXT O N N 22 DLE H H N N 23 DLE H2 H N N 24 DLE HA H N N 25 DLE HB2 H N N 26 DLE HB3 H N N 27 DLE HG H N N 28 DLE HD11 H N N 29 DLE HD12 H N N 30 DLE HD13 H N N 31 DLE HD21 H N N 32 DLE HD22 H N N 33 DLE HD23 H N N 34 DLE HXT H N N 35 DVA N N N N 36 DVA CA C N R 37 DVA CB C N N 38 DVA CG1 C N N 39 DVA CG2 C N N 40 DVA C C N N 41 DVA O O N N 42 DVA OXT O N N 43 DVA H H N N 44 DVA H2 H N N 45 DVA HA H N N 46 DVA HB H N N 47 DVA HG11 H N N 48 DVA HG12 H N N 49 DVA HG13 H N N 50 DVA HG21 H N N 51 DVA HG22 H N N 52 DVA HG23 H N N 53 DVA HXT H N N 54 ETA CA C N N 55 ETA N N N N 56 ETA C C N N 57 ETA O O N N 58 ETA HA1 H N N 59 ETA HA2 H N N 60 ETA H H N N 61 ETA H2 H N N 62 ETA HB1 H N N 63 ETA HB2 H N N 64 ETA HO H N N 65 FVA C C N N 66 FVA N N N N 67 FVA O O N N 68 FVA CA C N S 69 FVA CB C N N 70 FVA CG1 C N N 71 FVA CG2 C N N 72 FVA H H N N 73 FVA HA H N N 74 FVA HB H N N 75 FVA HG11 H N N 76 FVA HG12 H N N 77 FVA HG13 H N N 78 FVA HG21 H N N 79 FVA HG22 H N N 80 FVA HG23 H N N 81 FVA O1 O N N 82 FVA CN C N N 83 FVA HN H N N 84 FVA OXT O N N 85 FVA HXT H N N 86 GLY N N N N 87 GLY CA C N N 88 GLY C C N N 89 GLY O O N N 90 GLY OXT O N N 91 GLY H H N N 92 GLY H2 H N N 93 GLY HA2 H N N 94 GLY HA3 H N N 95 GLY HXT H N N 96 MOH C C N N 97 MOH O O N N 98 MOH H1 H N N 99 MOH H2 H N N 100 MOH H3 H N N 101 MOH HO H N N 102 TRP N N N N 103 TRP CA C N S 104 TRP C C N N 105 TRP O O N N 106 TRP CB C N N 107 TRP CG C Y N 108 TRP CD1 C Y N 109 TRP CD2 C Y N 110 TRP NE1 N Y N 111 TRP CE2 C Y N 112 TRP CE3 C Y N 113 TRP CZ2 C Y N 114 TRP CZ3 C Y N 115 TRP CH2 C Y N 116 TRP OXT O N N 117 TRP H H N N 118 TRP H2 H N N 119 TRP HA H N N 120 TRP HB2 H N N 121 TRP HB3 H N N 122 TRP HD1 H N N 123 TRP HE1 H N N 124 TRP HE3 H N N 125 TRP HZ2 H N N 126 TRP HZ3 H N N 127 TRP HH2 H N N 128 TRP HXT H N N 129 TYR N N N N 130 TYR CA C N S 131 TYR C C N N 132 TYR O O N N 133 TYR CB C N N 134 TYR CG C Y N 135 TYR CD1 C Y N 136 TYR CD2 C Y N 137 TYR CE1 C Y N 138 TYR CE2 C Y N 139 TYR CZ C Y N 140 TYR OH O N N 141 TYR OXT O N N 142 TYR H H N N 143 TYR H2 H N N 144 TYR HA H N N 145 TYR HB2 H N N 146 TYR HB3 H N N 147 TYR HD1 H N N 148 TYR HD2 H N N 149 TYR HE1 H N N 150 TYR HE2 H N N 151 TYR HH H N N 152 TYR HXT H N N 153 VAL N N N N 154 VAL CA C N S 155 VAL C C N N 156 VAL O O N N 157 VAL CB C N N 158 VAL CG1 C N N 159 VAL CG2 C N N 160 VAL OXT O N N 161 VAL H H N N 162 VAL H2 H N N 163 VAL HA H N N 164 VAL HB H N N 165 VAL HG11 H N N 166 VAL HG12 H N N 167 VAL HG13 H N N 168 VAL HG21 H N N 169 VAL HG22 H N N 170 VAL HG23 H N N 171 VAL HXT H N N 172 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 DLE N CA sing N N 13 DLE N H sing N N 14 DLE N H2 sing N N 15 DLE CA CB sing N N 16 DLE CA C sing N N 17 DLE CA HA sing N N 18 DLE CB CG sing N N 19 DLE CB HB2 sing N N 20 DLE CB HB3 sing N N 21 DLE CG CD1 sing N N 22 DLE CG CD2 sing N N 23 DLE CG HG sing N N 24 DLE CD1 HD11 sing N N 25 DLE CD1 HD12 sing N N 26 DLE CD1 HD13 sing N N 27 DLE CD2 HD21 sing N N 28 DLE CD2 HD22 sing N N 29 DLE CD2 HD23 sing N N 30 DLE C O doub N N 31 DLE C OXT sing N N 32 DLE OXT HXT sing N N 33 DVA N CA sing N N 34 DVA N H sing N N 35 DVA N H2 sing N N 36 DVA CA CB sing N N 37 DVA CA C sing N N 38 DVA CA HA sing N N 39 DVA CB CG1 sing N N 40 DVA CB CG2 sing N N 41 DVA CB HB sing N N 42 DVA CG1 HG11 sing N N 43 DVA CG1 HG12 sing N N 44 DVA CG1 HG13 sing N N 45 DVA CG2 HG21 sing N N 46 DVA CG2 HG22 sing N N 47 DVA CG2 HG23 sing N N 48 DVA C O doub N N 49 DVA C OXT sing N N 50 DVA OXT HXT sing N N 51 ETA CA N sing N N 52 ETA CA C sing N N 53 ETA CA HA1 sing N N 54 ETA CA HA2 sing N N 55 ETA N H sing N N 56 ETA N H2 sing N N 57 ETA C O sing N N 58 ETA C HB1 sing N N 59 ETA C HB2 sing N N 60 ETA O HO sing N N 61 FVA O C doub N N 62 FVA C CA sing N N 63 FVA H N sing N N 64 FVA N CN sing N N 65 FVA N CA sing N N 66 FVA CB CA sing N N 67 FVA CA HA sing N N 68 FVA HB CB sing N N 69 FVA CB CG2 sing N N 70 FVA CB CG1 sing N N 71 FVA HG13 CG1 sing N N 72 FVA HG12 CG1 sing N N 73 FVA CG1 HG11 sing N N 74 FVA HG22 CG2 sing N N 75 FVA HG23 CG2 sing N N 76 FVA CG2 HG21 sing N N 77 FVA CN O1 doub N N 78 FVA HN CN sing N N 79 FVA C OXT sing N N 80 FVA OXT HXT sing N N 81 GLY N CA sing N N 82 GLY N H sing N N 83 GLY N H2 sing N N 84 GLY CA C sing N N 85 GLY CA HA2 sing N N 86 GLY CA HA3 sing N N 87 GLY C O doub N N 88 GLY C OXT sing N N 89 GLY OXT HXT sing N N 90 MOH C O sing N N 91 MOH C H1 sing N N 92 MOH C H2 sing N N 93 MOH C H3 sing N N 94 MOH O HO sing N N 95 TRP N CA sing N N 96 TRP N H sing N N 97 TRP N H2 sing N N 98 TRP CA C sing N N 99 TRP CA CB sing N N 100 TRP CA HA sing N N 101 TRP C O doub N N 102 TRP C OXT sing N N 103 TRP CB CG sing N N 104 TRP CB HB2 sing N N 105 TRP CB HB3 sing N N 106 TRP CG CD1 doub Y N 107 TRP CG CD2 sing Y N 108 TRP CD1 NE1 sing Y N 109 TRP CD1 HD1 sing N N 110 TRP CD2 CE2 doub Y N 111 TRP CD2 CE3 sing Y N 112 TRP NE1 CE2 sing Y N 113 TRP NE1 HE1 sing N N 114 TRP CE2 CZ2 sing Y N 115 TRP CE3 CZ3 doub Y N 116 TRP CE3 HE3 sing N N 117 TRP CZ2 CH2 doub Y N 118 TRP CZ2 HZ2 sing N N 119 TRP CZ3 CH2 sing Y N 120 TRP CZ3 HZ3 sing N N 121 TRP CH2 HH2 sing N N 122 TRP OXT HXT sing N N 123 TYR N CA sing N N 124 TYR N H sing N N 125 TYR N H2 sing N N 126 TYR CA C sing N N 127 TYR CA CB sing N N 128 TYR CA HA sing N N 129 TYR C O doub N N 130 TYR C OXT sing N N 131 TYR CB CG sing N N 132 TYR CB HB2 sing N N 133 TYR CB HB3 sing N N 134 TYR CG CD1 doub Y N 135 TYR CG CD2 sing Y N 136 TYR CD1 CE1 sing Y N 137 TYR CD1 HD1 sing N N 138 TYR CD2 CE2 doub Y N 139 TYR CD2 HD2 sing N N 140 TYR CE1 CZ doub Y N 141 TYR CE1 HE1 sing N N 142 TYR CE2 CZ sing Y N 143 TYR CE2 HE2 sing N N 144 TYR CZ OH sing N N 145 TYR OH HH sing N N 146 TYR OXT HXT sing N N 147 VAL N CA sing N N 148 VAL N H sing N N 149 VAL N H2 sing N N 150 VAL CA C sing N N 151 VAL CA CB sing N N 152 VAL CA HA sing N N 153 VAL C O doub N N 154 VAL C OXT sing N N 155 VAL CB CG1 sing N N 156 VAL CB CG2 sing N N 157 VAL CB HB sing N N 158 VAL CG1 HG11 sing N N 159 VAL CG1 HG12 sing N N 160 VAL CG1 HG13 sing N N 161 VAL CG2 HG21 sing N N 162 VAL CG2 HG22 sing N N 163 VAL CG2 HG23 sing N N 164 VAL OXT HXT sing N N 165 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name METHANOL _pdbx_entity_nonpoly.comp_id MOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1GMA _pdbx_initial_refinement_model.details 'PDB ENTRY 1GMA' #