HEADER GLYCOSYLTRANSFERASE 19-JUN-97 1AMV OBSLTE 21-OCT-98 1AMV 2AMV TITLE THE STRUCTURE OF GLYCOGEN PHOSPHORYLASE B WITH AN ALKYL- TITLE 2 DIHYDROPYRIDINE-DICARBOXYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGEN PHOSPHORYLASE; COMPND 3 CHAIN: NULL; COMPND 4 EC: 2.4.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 TISSUE: MUSCLE KEYWDS GLYCOGEN PHOSPHORYLASE, GLYCOGEN METABOLISM, DIABETES, KEYWDS 2 INHIBITORS, CRYSTAL STRUCTURE, GLYCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.ZOGRAPHOS,N.G.OIKONOMAKOS,L.N.JOHNSON REVDAT 1 17-SEP-97 1AMV 0 JRNL AUTH S.E.ZOGRAPHOS,N.G.OIKONOMAKOS,K.E.TSITSANOU, JRNL AUTH 2 D.D.LEONIDAS,E.D.CHRYSINA,V.T.SKAMNAKI,H.BISCHOFF, JRNL AUTH 3 S.GOLDMAN,M.SCHRAMM,K.A.WATSON,L.N.JOHNSON JRNL TITL THE STRUCTURE OF GLYCOGEN PHOSPHORYLASE B WITH AN JRNL TITL 2 ALKYL-DIHYDROPYRIDINE-DICARBOXYLIC ACID COMPOUND, JRNL TITL 3 NOVEL AND POTENT INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.N.JOHNSON,P.SNAPE,J.L.MARTIN,K.R.ACHARYA, REMARK 1 AUTH 2 D.BARFORD,N.G.OIKONOMAKOS REMARK 1 TITL CRYSTALLOGRAPHIC BINDING STUDIES ON THE ALLOSTERIC REMARK 1 TITL 2 INHIBITOR GLUCOSE-6-PHOSPHATE TO T STATE GLYCOGEN REMARK 1 TITL 3 PHOSPHORYLASE B REMARK 1 REF J.MOL.BIOL. V. 232 253 1993 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.R.ACHARYA,D.I.STUART,K.M.VARVILL,L.N.JOHNSON REMARK 1 REF GLYCOGEN PHOSPHORYLASE B: 1 1991 REMARK 1 REF 2 DESCRIPTION OF THE PROTEIN REMARK 1 REF 3 STRUCTURE REMARK 1 PUBL SINGAPORE : WORLD SCIENTIFIC REMARK 1 REFN ISBN 981-02-0540-6 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 37399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : R FREE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.56 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.50 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.000 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 1.500 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.000 ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AMV COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NOV-1995 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.70 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DESY/EMBL, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.928 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : 18 CM IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,1/2+Z REMARK 290 3555 1/2-Y,1/2+X,3/4+Z REMARK 290 4555 1/2+Y,1/2-X,1/4+Z REMARK 290 5555 1/2-X,1/2+Y,3/4-Z REMARK 290 6555 1/2+X,1/2-Y,1/4-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,1/2-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.73000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.55500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.55500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.59500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.55500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.55500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.86500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.55500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.55500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.59500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.55500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.55500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.86500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.73000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER 1 REMARK 465 ARG 2 REMARK 465 PRO 3 REMARK 465 LEU 4 REMARK 465 SER 5 REMARK 465 ASP 6 REMARK 465 GLN 7 REMARK 465 GLU 8 REMARK 465 LYS 9 REMARK 465 ARG 10 REMARK 465 LYS 11 REMARK 465 GLN 12 REMARK 465 ILE 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE 165 CA ILE 165 CB 0.066 REMARK 500 MET 699 SD MET 699 CE -0.100 REMARK 500 MET 800 SD MET 800 CE 0.087 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU 105 N - CA - C ANGL. DEV. = 9.5 DEGREES REMARK 500 ALA 129 N - CA - C ANGL. DEV. =-13.2 DEGREES REMARK 500 GLY 135 N - CA - C ANGL. DEV. = 9.4 DEGREES REMARK 500 LEU 136 CA - CB - CG ANGL. DEV. = 18.1 DEGREES REMARK 500 LYS 169 N - CA - C ANGL. DEV. =-10.3 DEGREES REMARK 500 VAL 221 N - CA - C ANGL. DEV. =-10.8 DEGREES REMARK 500 ARG 358 N - CA - C ANGL. DEV. = 9.4 DEGREES REMARK 500 LEU 474 CA - CB - CG ANGL. DEV. = 9.6 DEGREES REMARK 500 TRP 491 N - CA - C ANGL. DEV. = 10.3 DEGREES REMARK 500 TYR 613 N - CA - C ANGL. DEV. =-12.2 DEGREES REMARK 500 ILE 666 N - CA - C ANGL. DEV. = 10.2 DEGREES REMARK 500 LYS 680 CD - CE - NZ ANGL. DEV. =-11.7 DEGREES REMARK 500 ASN 684 N - CA - C ANGL. DEV. = 10.3 DEGREES REMARK 500 ILE 689 N - CA - C ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG 714 N - CA - C ANGL. DEV. =-11.4 DEGREES REMARK 500 HIS 767 N - CA - C ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG 323 155.94 87.33 REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 1004 DISTANCE = 12.66 ANGSTROMS REMARK 525 HOH 1008 DISTANCE = 10.36 ANGSTROMS REMARK 525 HOH 1014 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH 1031 DISTANCE = 9.52 ANGSTROMS REMARK 525 HOH 1035 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH 1052 DISTANCE = 11.78 ANGSTROMS REMARK 525 HOH 1058 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH 1064 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH 1066 DISTANCE = 10.89 ANGSTROMS REMARK 525 HOH 1072 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH 1076 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH 1078 DISTANCE = 11.25 ANGSTROMS REMARK 525 HOH 1088 DISTANCE = 8.86 ANGSTROMS REMARK 525 HOH 1089 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH 1096 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH 1102 DISTANCE = 5.66 ANGSTROMS REMARK 525 HOH 1106 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH 1116 DISTANCE = 8.63 ANGSTROMS REMARK 525 HOH 1122 DISTANCE = 9.31 ANGSTROMS REMARK 525 HOH 1126 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH 1130 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH 1145 DISTANCE = 5.54 ANGSTROMS REMARK 525 HOH 1152 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH 1154 DISTANCE = 9.27 ANGSTROMS REMARK 525 HOH 1171 DISTANCE = 8.90 ANGSTROMS REMARK 525 HOH 1181 DISTANCE = 10.46 ANGSTROMS REMARK 525 HOH 1189 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH 1190 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH 1195 DISTANCE = 14.53 ANGSTROMS REMARK 525 HOH 1201 DISTANCE = 9.93 ANGSTROMS REMARK 525 HOH 1202 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH 1204 DISTANCE = 7.75 ANGSTROMS REMARK 525 HOH 1205 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH 1207 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH 1212 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH 1215 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH 1219 DISTANCE = 11.65 ANGSTROMS REMARK 525 HOH 1221 DISTANCE = 8.85 ANGSTROMS REMARK 525 HOH 1233 DISTANCE = 15.37 ANGSTROMS REMARK 525 HOH 1235 DISTANCE = 11.04 ANGSTROMS REMARK 525 HOH 1236 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH 1243 DISTANCE = 10.98 ANGSTROMS REMARK 525 HOH 1251 DISTANCE = 11.53 ANGSTROMS REMARK 525 HOH 1252 DISTANCE = 5.77 ANGSTROMS REMARK 525 HOH 1255 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH 1261 DISTANCE = 5.60 ANGSTROMS REMARK 525 HOH 1264 DISTANCE = 11.15 ANGSTROMS REMARK 525 HOH 1269 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH 1297 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH 1311 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH 1312 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH 1327 DISTANCE = 9.52 ANGSTROMS REMARK 525 HOH 1363 DISTANCE = 10.96 ANGSTROMS REMARK 525 HOH 1374 DISTANCE = 8.23 ANGSTROMS REMARK 525 HOH 1377 DISTANCE = 5.56 ANGSTROMS REMARK 525 HOH 1381 DISTANCE = 10.13 ANGSTROMS REMARK 525 HOH 1383 DISTANCE = 5.64 ANGSTROMS REMARK 525 HOH 1387 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH 1388 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH 1458 DISTANCE = 5.51 ANGSTROMS REMARK 525 HOH 1475 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH 1483 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH 1488 DISTANCE = 5.78 ANGSTROMS REMARK 525 HOH 1492 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH 1496 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH 1501 DISTANCE = 10.56 ANGSTROMS REMARK 525 HOH 1503 DISTANCE = 12.44 ANGSTROMS REMARK 525 HOH 1505 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH 1507 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH 1509 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH 1527 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH 1535 DISTANCE = 9.95 ANGSTROMS REMARK 525 HOH 1543 DISTANCE = 9.72 ANGSTROMS REMARK 525 HOH 1546 DISTANCE = 11.12 ANGSTROMS REMARK 525 HOH 1551 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH 1558 DISTANCE = 8.67 ANGSTROMS REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: TAKEN FROM RELEASED PDB ENTRY 1NOJ REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: TAKEN FROM RELEASED PDB ENTRY 1NOJ REMARK 999 REMARK 999 SEQUENCE REMARK 999 1AMV SWS P00489 1 - 13 NOT IN ATOMS LIST REMARK 999 REMARK 999 REFERENCE: K.NAKANO, P.K.HWANG, R.J.FLETTERICK, FEBS REMARK 999 LETT., V. 204, P. 283, 1986. REMARK 999 REMARK 999 HIGH RESOLUTION DATA (1.5 ANGSTROMS) REFINEMENT ON T-STATE REMARK 999 GLYCOGEN PHOSPHORYLASE (UNPUBLISHED RESULTS) HAS CONFIRMED REMARK 999 THAT RESIDUE 609 IS INDEED ALA (NOT PRO). DBREF 1AMV 14 842 UNP P00489 PHS2_RABIT 14 842 SEQADV 1AMV ALA 609 UNP P00489 PRO 609 CONFLICT SEQRES 1 842 SER ARG PRO LEU SER ASP GLN GLU LYS ARG LYS GLN ILE SEQRES 2 842 SER VAL ARG GLY LEU ALA GLY VAL GLU ASN VAL THR GLU SEQRES 3 842 LEU LYS LYS ASN PHE ASN ARG HIS LEU HIS PHE THR LEU SEQRES 4 842 VAL LYS ASP ARG ASN VAL ALA THR PRO ARG ASP TYR TYR SEQRES 5 842 PHE ALA LEU ALA HIS THR VAL ARG ASP HIS LEU VAL GLY SEQRES 6 842 ARG TRP ILE ARG THR GLN GLN HIS TYR TYR GLU LYS ASP SEQRES 7 842 PRO LYS ARG ILE TYR TYR LEU SER LEU GLU PHE TYR MET SEQRES 8 842 GLY ARG THR LEU GLN ASN THR MET VAL ASN LEU ALA LEU SEQRES 9 842 GLU ASN ALA CYS ASP GLU ALA THR TYR GLN LEU GLY LEU SEQRES 10 842 ASP MET GLU GLU LEU GLU GLU ILE GLU GLU ASP ALA GLY SEQRES 11 842 LEU GLY ASN GLY GLY LEU GLY ARG LEU ALA ALA CYS PHE SEQRES 12 842 LEU ASP SER MET ALA THR LEU GLY LEU ALA ALA TYR GLY SEQRES 13 842 TYR GLY ILE ARG TYR GLU PHE GLY ILE PHE ASN GLN LYS SEQRES 14 842 ILE CYS GLY GLY TRP GLN MET GLU GLU ALA ASP ASP TRP SEQRES 15 842 LEU ARG TYR GLY ASN PRO TRP GLU LYS ALA ARG PRO GLU SEQRES 16 842 PHE THR LEU PRO VAL HIS PHE TYR GLY ARG VAL GLU HIS SEQRES 17 842 THR SER GLN GLY ALA LYS TRP VAL ASP THR GLN VAL VAL SEQRES 18 842 LEU ALA MET PRO TYR ASP THR PRO VAL PRO GLY TYR ARG SEQRES 19 842 ASN ASN VAL VAL ASN THR MET ARG LEU TRP SER ALA LYS SEQRES 20 842 ALA PRO ASN ASP PHE ASN LEU LYS ASP PHE ASN VAL GLY SEQRES 21 842 GLY TYR ILE GLN ALA VAL LEU ASP ARG ASN LEU ALA GLU SEQRES 22 842 ASN ILE SER ARG VAL LEU TYR PRO ASN ASP ASN PHE PHE SEQRES 23 842 GLU GLY LYS GLU LEU ARG LEU LYS GLN GLU TYR PHE VAL SEQRES 24 842 VAL ALA ALA THR LEU GLN ASP ILE ILE ARG ARG PHE LYS SEQRES 25 842 SER SER LYS PHE GLY CYS ARG ASP PRO VAL ARG THR ASN SEQRES 26 842 PHE ASP ALA PHE PRO ASP LYS VAL ALA ILE GLN LEU ASN SEQRES 27 842 ASP THR HIS PRO SER LEU ALA ILE PRO GLU LEU MET ARG SEQRES 28 842 VAL LEU VAL ASP LEU GLU ARG LEU ASP TRP ASP LYS ALA SEQRES 29 842 TRP GLU VAL THR VAL LYS THR CYS ALA TYR THR ASN HIS SEQRES 30 842 THR VAL LEU PRO GLU ALA LEU GLU ARG TRP PRO VAL HIS SEQRES 31 842 LEU LEU GLU THR LEU LEU PRO ARG HIS LEU GLN ILE ILE SEQRES 32 842 TYR GLU ILE ASN GLN ARG PHE LEU ASN ARG VAL ALA ALA SEQRES 33 842 ALA PHE PRO GLY ASP VAL ASP ARG LEU ARG ARG MET SER SEQRES 34 842 LEU VAL GLU GLU GLY ALA VAL LYS ARG ILE ASN MET ALA SEQRES 35 842 HIS LEU CYS ILE ALA GLY SER HIS ALA VAL ASN GLY VAL SEQRES 36 842 ALA ARG ILE HIS SER GLU ILE LEU LYS LYS THR ILE PHE SEQRES 37 842 LYS ASP PHE TYR GLU LEU GLU PRO HIS LYS PHE GLN ASN SEQRES 38 842 LYS THR ASN GLY ILE THR PRO ARG ARG TRP LEU VAL LEU SEQRES 39 842 CYS ASN PRO GLY LEU ALA GLU ILE ILE ALA GLU ARG ILE SEQRES 40 842 GLY GLU GLU TYR ILE SER ASP LEU ASP GLN LEU ARG LYS SEQRES 41 842 LEU LEU SER TYR VAL ASP ASP GLU ALA PHE ILE ARG ASP SEQRES 42 842 VAL ALA LYS VAL LYS GLN GLU ASN LYS LEU LYS PHE ALA SEQRES 43 842 ALA TYR LEU GLU ARG GLU TYR LYS VAL HIS ILE ASN PRO SEQRES 44 842 ASN SER LEU PHE ASP VAL GLN VAL LYS ARG ILE HIS GLU SEQRES 45 842 TYR LYS ARG GLN LEU LEU ASN CYS LEU HIS VAL ILE THR SEQRES 46 842 LEU TYR ASN ARG ILE LYS LYS GLU PRO ASN LYS PHE VAL SEQRES 47 842 VAL PRO ARG THR VAL MET ILE GLY GLY LYS ALA ALA PRO SEQRES 48 842 GLY TYR HIS MET ALA LYS MET ILE ILE LYS LEU ILE THR SEQRES 49 842 ALA ILE GLY ASP VAL VAL ASN HIS ASP PRO VAL VAL GLY SEQRES 50 842 ASP ARG LEU ARG VAL ILE PHE LEU GLU ASN TYR ARG VAL SEQRES 51 842 SER LEU ALA GLU LYS VAL ILE PRO ALA ALA ASP LEU SER SEQRES 52 842 GLU GLN ILE SER THR ALA GLY THR GLU ALA SER GLY THR SEQRES 53 842 GLY ASN MET LYS PHE MET LEU ASN GLY ALA LEU THR ILE SEQRES 54 842 GLY THR MET ASP GLY ALA ASN VAL GLU MET ALA GLU GLU SEQRES 55 842 ALA GLY GLU GLU ASN PHE PHE ILE PHE GLY MET ARG VAL SEQRES 56 842 GLU ASP VAL ASP ARG LEU ASP GLN ARG GLY TYR ASN ALA SEQRES 57 842 GLN GLU TYR TYR ASP ARG ILE PRO GLU LEU ARG GLN ILE SEQRES 58 842 ILE GLU GLN LEU SER SER GLY PHE PHE SER PRO LYS GLN SEQRES 59 842 PRO ASP LEU PHE LYS ASP ILE VAL ASN MET LEU MET HIS SEQRES 60 842 HIS ASP ARG PHE LYS VAL PHE ALA ASP TYR GLU GLU TYR SEQRES 61 842 VAL LYS CYS GLN GLU ARG VAL SER ALA LEU TYR LYS ASN SEQRES 62 842 PRO ARG GLU TRP THR ARG MET VAL ILE ARG ASN ILE ALA SEQRES 63 842 THR SER GLY LYS PHE SER SER ASP ARG THR ILE ALA GLN SEQRES 64 842 TYR ALA ARG GLU ILE TRP GLY VAL GLU PRO SER ARG GLN SEQRES 65 842 ARG LEU PRO ALA PRO ASP GLU LYS ILE PRO HET PLP 999 15 HET BIN 930 28 HET GOL 1 6 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM BIN 2,3-DICARBOXY-4-(2-CHLORO-PHENYL)-1-ETHYL-5- HETNAM 2 BIN ISOPROPOXYCARBONYL-6-METHYL-PYRIDINIUM HETNAM GOL GLYCEROL HETSYN PLP VITAMIN B6 COMPLEX FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 BIN C20 H21 CL N O6 1+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *570(H2 O1) HELIX 1 1 VAL 21 PHE 37 1 17 HELIX 2 2 PRO 48 GLU 76 1 29 HELIX 3 3 LEU 95 LEU 102 1 8 HELIX 4 4 GLU 105 GLN 114 1 10 HELIX 5 5 MET 119 ILE 125 1 7 HELIX 6 6 GLY 135 THR 149 1 15 HELIX 7 7 PRO 194 PHE 196 5 3 HELIX 8 8 TYR 262 ARG 269 1 8 HELIX 9 9 GLU 273 SER 276 5 4 HELIX 10 10 GLU 290 LYS 312 1 23 HELIX 11 11 PHE 326 LYS 332 5 7 HELIX 12 12 THR 340 ASP 355 5 16 HELIX 13 13 TRP 361 THR 371 1 11 HELIX 14 14 PRO 381 ALA 383 5 3 HELIX 15 15 VAL 389 LEU 395 1 7 HELIX 16 16 PRO 397 ALA 417 1 21 HELIX 17 17 VAL 422 MET 428 1 7 HELIX 18 18 MET 441 GLY 448 1 8 HELIX 19 19 ARG 457 LYS 465 1 9 HELIX 20 20 LYS 469 LEU 474 1 6 HELIX 21 21 PRO 476 LYS 478 5 3 HELIX 22 22 PRO 488 TRP 491 1 4 HELIX 23 23 PRO 497 ILE 507 1 11 HELIX 24 24 GLU 510 ILE 512 5 3 HELIX 25 25 LEU 515 TYR 524 5 10 HELIX 26 26 GLU 528 GLU 552 1 25 HELIX 27 27 GLN 576 LYS 592 1 17 HELIX 28 28 HIS 614 HIS 632 1 19 HELIX 29 29 VAL 650 ALA 659 1 10 HELIX 30 30 GLY 677 ASN 684 1 8 HELIX 31 31 GLY 694 ALA 703 5 10 HELIX 32 32 GLU 705 ASN 707 5 3 HELIX 33 33 VAL 715 ARG 724 1 10 HELIX 34 34 ALA 728 ARG 734 5 7 HELIX 35 35 PRO 736 SER 747 1 12 HELIX 36 36 PRO 755 HIS 767 5 13 HELIX 37 37 VAL 773 LYS 792 5 20 HELIX 38 38 PRO 794 THR 807 1 14 HELIX 39 39 GLY 809 PHE 811 5 3 HELIX 40 40 SER 813 GLU 823 1 11 SHEET 1 A 7 GLU 190 ARG 193 0 SHEET 2 A 7 VAL 221 PRO 231 -1 N ASP 227 O LYS 191 SHEET 3 A 7 VAL 238 ALA 248 -1 N LYS 247 O LEU 222 SHEET 4 A 7 ALA 154 ILE 159 1 N GLY 156 O THR 240 SHEET 5 A 7 ARG 81 LEU 85 1 N ILE 82 O TYR 155 SHEET 6 A 7 VAL 333 ASN 338 1 N ALA 334 O ARG 81 SHEET 7 A 7 CYS 372 THR 375 1 N ALA 373 O ILE 335 SHEET 1 B 2 ASN 167 CYS 171 0 SHEET 2 B 2 TRP 174 GLU 178 -1 N GLU 178 O ASN 167 SHEET 1 C 2 LEU 198 PHE 202 0 SHEET 2 C 2 GLN 219 ALA 223 -1 N ALA 223 O LEU 198 SHEET 1 D 2 ARG 205 HIS 208 0 SHEET 2 D 2 ALA 213 VAL 216 -1 N VAL 216 O ARG 205 SHEET 1 E 2 ARG 386 PRO 388 0 SHEET 2 E 2 ARG 438 ASN 440 -1 N ILE 439 O TRP 387 SHEET 1 F 2 VAL 452 GLY 454 0 SHEET 2 F 2 PHE 479 ASN 481 1 N GLN 480 O VAL 452 SHEET 1 G 3 LEU 562 VAL 567 0 SHEET 2 G 3 ARG 601 GLY 606 1 N THR 602 O LEU 562 SHEET 3 G 3 LEU 640 PHE 644 1 N ARG 641 O ARG 601 SHEET 1 H 2 LEU 662 GLN 665 0 SHEET 2 H 2 LEU 687 GLY 690 1 N LEU 687 O SER 663 LINK C4A PLP 999 NZ LYS 680 CISPEP 1 ILE 841 PRO 842 0 -0.61 CRYST1 127.110 127.110 115.460 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007867 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008661 0.00000