HEADER ACTIN-BINDING PROTEIN 30-JUN-97 1AOA TITLE N-TERMINAL ACTIN-CROSSLINKING DOMAIN FROM HUMAN FIMBRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-FIMBRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ABD1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS ACTIN-BINDING PROTEIN, CALCIUM-BINDING, PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR S.C.GOLDSMITH,N.POKALA,W.SHEN,A.A.FEDOROV,P.MATSUDAIRA,S.C.ALMO REVDAT 4 07-FEB-24 1AOA 1 REMARK REVDAT 3 24-FEB-09 1AOA 1 VERSN REVDAT 2 01-APR-03 1AOA 1 JRNL REVDAT 1 31-DEC-97 1AOA 0 JRNL AUTH S.C.GOLDSMITH,N.POKALA,W.SHEN,A.A.FEDOROV,P.MATSUDAIRA, JRNL AUTH 2 S.C.ALMO JRNL TITL THE STRUCTURE OF AN ACTIN-CROSSLINKING DOMAIN FROM HUMAN JRNL TITL 2 FIMBRIN. JRNL REF NAT.STRUCT.BIOL. V. 4 708 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 9302997 JRNL DOI 10.1038/NSB0997-708 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 10458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1908 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.630 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.69 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.480 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AOA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : AUG-95 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11764 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASES, X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 8-20: REMARK 280 PEG 8000, 20 MM CALCIUM ACETATE, 100MM SODIUM CACODYLATE, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.01600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.14900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.62050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.14900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.01600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.62050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 101 REMARK 465 GLY A 102 REMARK 465 ILE A 103 REMARK 465 CYS A 104 REMARK 465 ALA A 105 REMARK 465 LEU A 106 REMARK 465 GLY A 107 REMARK 465 GLY A 108 REMARK 465 THR A 109 REMARK 465 SER A 110 REMARK 465 GLU A 111 REMARK 465 LEU A 112 REMARK 465 SER A 113 REMARK 465 SER A 114 REMARK 465 GLU A 115 REMARK 465 GLY A 116 REMARK 465 THR A 117 REMARK 465 GLN A 118 REMARK 465 HIS A 119 REMARK 465 SER A 120 REMARK 465 ALA A 252 REMARK 465 ALA A 253 REMARK 465 LEU A 254 REMARK 465 LEU A 255 REMARK 465 ARG A 256 REMARK 465 ASP A 257 REMARK 465 GLY A 258 REMARK 465 GLU A 259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 245 CG CD1 CD2 REMARK 470 SER A 246 OG REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 248 CG OD1 ND2 REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 LEU A 251 CG CD1 CD2 REMARK 470 THR A 260 OG1 CG2 REMARK 470 LEU A 261 CG CD1 CD2 REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 LEU A 264 CG CD1 CD2 REMARK 470 MET A 265 CG SD CE REMARK 470 LYS A 266 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 156 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG A 275 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 GLY A 327 N - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 224 -74.25 -33.97 REMARK 500 GLU A 244 -74.04 -81.20 REMARK 500 SER A 246 110.60 176.70 REMARK 500 ARG A 247 -105.43 172.35 REMARK 500 ASN A 248 -92.94 59.68 REMARK 500 PHE A 292 51.79 -113.35 REMARK 500 SER A 293 -75.73 -150.84 REMARK 500 SER A 299 -13.71 74.01 REMARK 500 LYS A 315 -163.15 -178.46 REMARK 500 THR A 331 -53.58 78.46 REMARK 500 PHE A 352 -38.36 72.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 1AOA A 101 375 UNP P13797 PLST_HUMAN 98 372 SEQRES 1 A 275 GLU GLY ILE CYS ALA LEU GLY GLY THR SER GLU LEU SER SEQRES 2 A 275 SER GLU GLY THR GLN HIS SER TYR SER GLU GLU GLU LYS SEQRES 3 A 275 TYR ALA PHE VAL ASN TRP ILE ASN LYS ALA LEU GLU ASN SEQRES 4 A 275 ASP PRO ASP CYS ARG HIS VAL ILE PRO MET ASN PRO ASN SEQRES 5 A 275 THR ASP ASP LEU PHE LYS ALA VAL GLY ASP GLY ILE VAL SEQRES 6 A 275 LEU CYS LYS MET ILE ASN LEU SER VAL PRO ASP THR ILE SEQRES 7 A 275 ASP GLU ARG ALA ILE ASN LYS LYS LYS LEU THR PRO PHE SEQRES 8 A 275 ILE ILE GLN GLU ASN LEU ASN LEU ALA LEU ASN SER ALA SEQRES 9 A 275 SER ALA ILE GLY CYS HIS VAL VAL ASN ILE GLY ALA GLU SEQRES 10 A 275 ASP LEU ARG ALA GLY LYS PRO HIS LEU VAL LEU GLY LEU SEQRES 11 A 275 LEU TRP GLN ILE ILE LYS ILE GLY LEU PHE ALA ASP ILE SEQRES 12 A 275 GLU LEU SER ARG ASN GLU ALA LEU ALA ALA LEU LEU ARG SEQRES 13 A 275 ASP GLY GLU THR LEU GLU GLU LEU MET LYS LEU SER PRO SEQRES 14 A 275 GLU GLU LEU LEU LEU ARG TRP ALA ASN PHE HIS LEU GLU SEQRES 15 A 275 ASN SER GLY TRP GLN LYS ILE ASN ASN PHE SER ALA ASP SEQRES 16 A 275 ILE LYS ASP SER LYS ALA TYR PHE HIS LEU LEU ASN GLN SEQRES 17 A 275 ILE ALA PRO LYS GLY GLN LYS GLU GLY GLU PRO ARG ILE SEQRES 18 A 275 ASP ILE ASN MET SER GLY PHE ASN GLU THR ASP ASP LEU SEQRES 19 A 275 LYS ARG ALA GLU SER MET LEU GLN GLN ALA ASP LYS LEU SEQRES 20 A 275 GLY CYS ARG GLN PHE VAL THR PRO ALA ASP VAL VAL SER SEQRES 21 A 275 GLY ASN PRO LYS LEU ASN LEU ALA PHE VAL ALA ASN LEU SEQRES 22 A 275 PHE ASN FORMUL 2 HOH *20(H2 O) HELIX 1 1 GLU A 123 ALA A 136 1 14 HELIX 2 2 ASP A 154 ASP A 162 5 9 HELIX 3 3 ILE A 164 SER A 173 1 10 HELIX 4 4 GLU A 180 ALA A 182 5 3 HELIX 5 5 PRO A 190 ALA A 206 1 17 HELIX 6 6 ALA A 216 ARG A 220 1 5 HELIX 7 7 PRO A 224 GLU A 244 1 21 HELIX 8 8 LEU A 261 LYS A 266 1 6 HELIX 9 9 PRO A 269 ASN A 283 1 15 HELIX 10 10 LYS A 300 ILE A 309 1 10 HELIX 11 11 ASP A 333 ALA A 344 1 12 HELIX 12 12 PRO A 355 VAL A 359 1 5 HELIX 13 13 PRO A 363 LEU A 373 1 11 CISPEP 1 ILE A 147 PRO A 148 0 -0.10 CRYST1 50.032 61.241 102.298 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019987 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009775 0.00000