data_1AOD # _entry.id 1AOD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AOD pdb_00001aod 10.2210/pdb1aod/pdb WWPDB D_1000171058 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AOD _pdbx_database_status.recvd_initial_deposition_date 1997-07-02 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Heinz, D.W.' 1 'Moser, J.' 2 # _citation.id primary _citation.title 'Crystal structure of the phosphatidylinositol-specific phospholipase C from the human pathogen Listeria monocytogenes.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 273 _citation.page_first 269 _citation.page_last 282 _citation.year 1997 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9367761 _citation.pdbx_database_id_DOI 10.1006/jmbi.1997.1290 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Moser, J.' 1 ? primary 'Gerstel, B.' 2 ? primary 'Meyer, J.E.' 3 ? primary 'Chakraborty, T.' 4 ? primary 'Wehland, J.' 5 ? primary 'Heinz, D.W.' 6 ? # _cell.entry_id 1AOD _cell.length_a 82.100 _cell.length_b 82.100 _cell.length_c 92.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AOD _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PHOSPHATIDYLINOSITOL-SPECIFIC PHOSPHOLIPASE C' 32972.668 1 3.1.4.10 ? ? 'BOUND MYO-INOSITOL IN ACTIVE SITE' 2 non-polymer syn 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE 180.156 1 ? ? ? ? 3 water nat water 18.015 94 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PI-PLC # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAK DNLNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLK DVRGKILLLSENHTKKPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTP RQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN ; _entity_poly.pdbx_seq_one_letter_code_can ;AYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAK DNLNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLK DVRGKILLLSENHTKKPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTP RQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 TYR n 1 3 SER n 1 4 LEU n 1 5 ASN n 1 6 ASN n 1 7 TRP n 1 8 ASN n 1 9 LYS n 1 10 PRO n 1 11 ILE n 1 12 LYS n 1 13 ASN n 1 14 SER n 1 15 VAL n 1 16 THR n 1 17 THR n 1 18 LYS n 1 19 GLN n 1 20 TRP n 1 21 MET n 1 22 SER n 1 23 ALA n 1 24 LEU n 1 25 PRO n 1 26 ASP n 1 27 THR n 1 28 THR n 1 29 ASN n 1 30 LEU n 1 31 ALA n 1 32 ALA n 1 33 LEU n 1 34 SER n 1 35 ILE n 1 36 PRO n 1 37 GLY n 1 38 THR n 1 39 HIS n 1 40 ASP n 1 41 THR n 1 42 MET n 1 43 SER n 1 44 TYR n 1 45 ASN n 1 46 GLY n 1 47 ASP n 1 48 ILE n 1 49 THR n 1 50 TRP n 1 51 THR n 1 52 LEU n 1 53 THR n 1 54 LYS n 1 55 PRO n 1 56 LEU n 1 57 ALA n 1 58 GLN n 1 59 THR n 1 60 GLN n 1 61 THR n 1 62 MET n 1 63 SER n 1 64 LEU n 1 65 TYR n 1 66 GLN n 1 67 GLN n 1 68 LEU n 1 69 GLU n 1 70 ALA n 1 71 GLY n 1 72 ILE n 1 73 ARG n 1 74 TYR n 1 75 ILE n 1 76 ASP n 1 77 ILE n 1 78 ARG n 1 79 ALA n 1 80 LYS n 1 81 ASP n 1 82 ASN n 1 83 LEU n 1 84 ASN n 1 85 ILE n 1 86 TYR n 1 87 HIS n 1 88 GLY n 1 89 PRO n 1 90 ILE n 1 91 PHE n 1 92 LEU n 1 93 ASN n 1 94 ALA n 1 95 SER n 1 96 LEU n 1 97 SER n 1 98 GLY n 1 99 VAL n 1 100 LEU n 1 101 GLU n 1 102 THR n 1 103 ILE n 1 104 THR n 1 105 GLN n 1 106 PHE n 1 107 LEU n 1 108 LYS n 1 109 LYS n 1 110 ASN n 1 111 PRO n 1 112 LYS n 1 113 GLU n 1 114 THR n 1 115 ILE n 1 116 ILE n 1 117 MET n 1 118 ARG n 1 119 LEU n 1 120 LYS n 1 121 ASP n 1 122 GLU n 1 123 GLN n 1 124 ASN n 1 125 SER n 1 126 ASN n 1 127 ASP n 1 128 SER n 1 129 PHE n 1 130 ASP n 1 131 TYR n 1 132 ARG n 1 133 ILE n 1 134 GLN n 1 135 PRO n 1 136 LEU n 1 137 ILE n 1 138 ASN n 1 139 ILE n 1 140 TYR n 1 141 LYS n 1 142 ASP n 1 143 TYR n 1 144 PHE n 1 145 TYR n 1 146 THR n 1 147 THR n 1 148 PRO n 1 149 ARG n 1 150 THR n 1 151 ASP n 1 152 THR n 1 153 SER n 1 154 ASN n 1 155 LYS n 1 156 ILE n 1 157 PRO n 1 158 THR n 1 159 LEU n 1 160 LYS n 1 161 ASP n 1 162 VAL n 1 163 ARG n 1 164 GLY n 1 165 LYS n 1 166 ILE n 1 167 LEU n 1 168 LEU n 1 169 LEU n 1 170 SER n 1 171 GLU n 1 172 ASN n 1 173 HIS n 1 174 THR n 1 175 LYS n 1 176 LYS n 1 177 PRO n 1 178 LEU n 1 179 VAL n 1 180 ILE n 1 181 ASN n 1 182 SER n 1 183 ARG n 1 184 LYS n 1 185 PHE n 1 186 GLY n 1 187 MET n 1 188 GLN n 1 189 PHE n 1 190 GLY n 1 191 ALA n 1 192 PRO n 1 193 ASN n 1 194 GLN n 1 195 VAL n 1 196 ILE n 1 197 GLN n 1 198 ASP n 1 199 ASP n 1 200 TYR n 1 201 ASN n 1 202 GLY n 1 203 PRO n 1 204 SER n 1 205 VAL n 1 206 LYS n 1 207 THR n 1 208 LYS n 1 209 PHE n 1 210 LYS n 1 211 GLU n 1 212 ILE n 1 213 VAL n 1 214 GLN n 1 215 THR n 1 216 ALA n 1 217 TYR n 1 218 GLN n 1 219 ALA n 1 220 SER n 1 221 LYS n 1 222 ALA n 1 223 ASP n 1 224 ASN n 1 225 LYS n 1 226 LEU n 1 227 PHE n 1 228 LEU n 1 229 ASN n 1 230 HIS n 1 231 ILE n 1 232 SER n 1 233 ALA n 1 234 THR n 1 235 SER n 1 236 LEU n 1 237 THR n 1 238 PHE n 1 239 THR n 1 240 PRO n 1 241 ARG n 1 242 GLN n 1 243 TYR n 1 244 ALA n 1 245 ALA n 1 246 ALA n 1 247 LEU n 1 248 ASN n 1 249 ASN n 1 250 LYS n 1 251 VAL n 1 252 GLU n 1 253 GLN n 1 254 PHE n 1 255 VAL n 1 256 LEU n 1 257 ASN n 1 258 LEU n 1 259 THR n 1 260 SER n 1 261 GLU n 1 262 LYS n 1 263 VAL n 1 264 ARG n 1 265 GLY n 1 266 LEU n 1 267 GLY n 1 268 ILE n 1 269 LEU n 1 270 ILE n 1 271 MET n 1 272 ASP n 1 273 PHE n 1 274 PRO n 1 275 GLU n 1 276 LYS n 1 277 GLN n 1 278 THR n 1 279 ILE n 1 280 LYS n 1 281 ASN n 1 282 ILE n 1 283 ILE n 1 284 LYS n 1 285 ASN n 1 286 ASN n 1 287 LYS n 1 288 PHE n 1 289 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Listeria _entity_src_gen.pdbx_gene_src_gene PLCA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'EGD SEROTYPE 1/2A' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Listeria monocytogenes' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1639 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line BL21 _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location 'SECRETED INTO MEDIUM' _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene 'PLCA DELETION VARIANT' _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location CYTOPLASM _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PLCA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PLC_LISMO _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P34024 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MYKNYLQRTLVLLLCFILYFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTL TKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYR IQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTKFKEI VQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1AOD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 289 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P34024 _struct_ref_seq.db_align_beg 29 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 317 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 7 _struct_ref_seq.pdbx_auth_seq_align_end 295 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 INS non-polymer . 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE MYO-INOSITOL 'C6 H12 O6' 180.156 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1AOD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_percent_sol 55 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'THE PROTEIN WAS CRYSTALLIZED FROM 0.1 M NA-HEPES PH 7.5, 0.8 M NA-K-TARTRATE, 45 MM MYO-INOSITOL' # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-10-28 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRAPHITE(002)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X31' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X31 _diffrn_source.pdbx_wavelength 0.9 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AOD _reflns.observed_criterion_sigma_I 0. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 24.0 _reflns.d_resolution_high 2.6 _reflns.number_obs 10914 _reflns.number_all ? _reflns.percent_possible_obs 94.4 _reflns.pdbx_Rmerge_I_obs 0.0780000 _reflns.pdbx_Rsym_value 0.1040000 _reflns.pdbx_netI_over_sigmaI 7.7 _reflns.B_iso_Wilson_estimate 23.8 _reflns.pdbx_redundancy 3.9 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.6 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_all 97. _reflns_shell.Rmerge_I_obs 0.3800000 _reflns_shell.pdbx_Rsym_value 0.4100000 _reflns_shell.meanI_over_sigI_obs 3.2 _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1AOD _refine.ls_number_reflns_obs 10774 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1000000.0 _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20. _refine.ls_d_res_high 2.6 _refine.ls_percent_reflns_obs 94.4 _refine.ls_R_factor_obs 0.1580000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1580000 _refine.ls_R_factor_R_free 0.2180000 _refine.ls_R_factor_R_free_error 0.0065 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 1108 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 31.4 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1PTD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'GROUPED B-FACTOR REFINEME 2 PARAMETERS PER RESIDUE' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1AOD _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 20.0 _refine_analyze.Luzzati_coordinate_error_free 0.38 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2208 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 2314 _refine_hist.d_res_high 2.6 _refine_hist.d_res_low 20. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.35 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 23.8 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.11 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.6 _refine_ls_shell.d_res_low 2.72 _refine_ls_shell.number_reflns_R_work 808 _refine_ls_shell.R_factor_R_work 0.2410000 _refine_ls_shell.percent_reflns_obs 63.5 _refine_ls_shell.R_factor_R_free 0.2480000 _refine_ls_shell.R_factor_R_free_error 0.026 _refine_ls_shell.percent_reflns_R_free 6.24 _refine_ls_shell.number_reflns_R_free 88 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARAM19X.PRO TOP19X.PRO 'X-RAY DIFFRACTION' 2 PARAM19.SOL ? 'X-RAY DIFFRACTION' 3 INO.PAR INO.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1AOD _struct.title 'PHOSPHATIDYLINOSITOL-SPECIFIC PHOSPHOLIPASE C FROM LISTERIA MONOCYTOGENES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AOD _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, PHOSPHOLIPID DEGRADATION, VIRULENCE FACTOR OF HUMAN PATHOGEN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 30 ? ALA A 32 ? LEU A 36 ALA A 38 5 ? 3 HELX_P HELX_P2 2 ILE A 48 ? LEU A 52 ? ILE A 54 LEU A 58 1 ? 5 HELX_P HELX_P3 3 LYS A 54 ? ALA A 57 ? LYS A 60 ALA A 63 1 ? 4 HELX_P HELX_P4 4 LEU A 64 ? GLU A 69 ? LEU A 70 GLU A 75 1 ? 6 HELX_P HELX_P5 5 LEU A 96 ? LYS A 109 ? LEU A 102 LYS A 115 1 ? 14 HELX_P HELX_P6 6 SER A 128 ? TYR A 143 ? SER A 134 TYR A 149 1 ? 16 HELX_P HELX_P7 7 LEU A 159 ? VAL A 162 ? LEU A 165 VAL A 168 1 ? 4 HELX_P HELX_P8 8 VAL A 205 ? LYS A 221 ? VAL A 211 LYS A 227 1 ? 17 HELX_P HELX_P9 9 PRO A 240 ? SER A 260 ? PRO A 246 SER A 266 1 ? 21 HELX_P HELX_P10 10 LYS A 276 ? ASN A 285 ? LYS A 282 ASN A 291 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 34 ? THR A 38 ? SER A 40 THR A 44 A 2 GLY A 267 ? MET A 271 ? GLY A 273 MET A 277 A 3 LEU A 226 ? HIS A 230 ? LEU A 232 HIS A 236 A 4 GLN A 194 ? GLN A 197 ? GLN A 200 GLN A 203 B 1 TYR A 74 ? ALA A 79 ? TYR A 80 ALA A 85 B 2 ILE A 115 ? ASP A 121 ? ILE A 121 ASP A 127 B 3 ILE A 166 ? GLU A 171 ? ILE A 172 GLU A 177 C 1 THR A 146 ? PRO A 148 ? THR A 152 PRO A 154 C 2 ARG A 183 ? PHE A 185 ? ARG A 189 PHE A 191 C 3 LEU A 178 ? ILE A 180 ? LEU A 184 ILE A 186 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 35 ? O ILE A 41 N GLY A 267 ? N GLY A 273 A 2 3 O ILE A 268 ? O ILE A 274 N ASN A 229 ? N ASN A 235 A 3 4 O LEU A 226 ? O LEU A 232 N VAL A 195 ? N VAL A 201 B 1 2 O ILE A 75 ? O ILE A 81 N ILE A 116 ? N ILE A 122 B 2 3 O ILE A 115 ? O ILE A 121 N LEU A 167 ? N LEU A 173 C 1 2 O THR A 147 ? O THR A 153 N LYS A 184 ? N LYS A 190 C 2 3 O ARG A 183 ? O ARG A 189 N ILE A 180 ? N ILE A 186 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details CIC Unknown ? ? ? ? 2 'INOSITOL BINDING SITE.' AC1 Software A INS 296 ? 7 'BINDING SITE FOR RESIDUE INS A 296' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CIC 2 HIS A 39 ? HIS A 45 . ? 1_555 ? 2 CIC 2 HIS A 87 ? HIS A 93 . ? 1_555 ? 3 AC1 7 HIS A 39 ? HIS A 45 . ? 1_555 ? 4 AC1 7 ARG A 78 ? ARG A 84 . ? 1_555 ? 5 AC1 7 ARG A 118 ? ARG A 124 . ? 1_555 ? 6 AC1 7 LYS A 120 ? LYS A 126 . ? 1_555 ? 7 AC1 7 ASP A 198 ? ASP A 204 . ? 1_555 ? 8 AC1 7 HOH C . ? HOH A 346 . ? 1_555 ? 9 AC1 7 HOH C . ? HOH A 350 . ? 1_555 ? # _database_PDB_matrix.entry_id 1AOD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1AOD _atom_sites.fract_transf_matrix[1][1] 0.012180 _atom_sites.fract_transf_matrix[1][2] 0.007032 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014065 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010858 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 7 ? ? ? A . n A 1 2 TYR 2 8 ? ? ? A . n A 1 3 SER 3 9 ? ? ? A . n A 1 4 LEU 4 10 ? ? ? A . n A 1 5 ASN 5 11 ? ? ? A . n A 1 6 ASN 6 12 ? ? ? A . n A 1 7 TRP 7 13 ? ? ? A . n A 1 8 ASN 8 14 ? ? ? A . n A 1 9 LYS 9 15 ? ? ? A . n A 1 10 PRO 10 16 ? ? ? A . n A 1 11 ILE 11 17 ? ? ? A . n A 1 12 LYS 12 18 ? ? ? A . n A 1 13 ASN 13 19 ? ? ? A . n A 1 14 SER 14 20 ? ? ? A . n A 1 15 VAL 15 21 21 VAL VAL A . n A 1 16 THR 16 22 22 THR THR A . n A 1 17 THR 17 23 23 THR THR A . n A 1 18 LYS 18 24 24 LYS LYS A . n A 1 19 GLN 19 25 25 GLN GLN A . n A 1 20 TRP 20 26 26 TRP TRP A . n A 1 21 MET 21 27 27 MET MET A . n A 1 22 SER 22 28 28 SER SER A . n A 1 23 ALA 23 29 29 ALA ALA A . n A 1 24 LEU 24 30 30 LEU LEU A . n A 1 25 PRO 25 31 31 PRO PRO A . n A 1 26 ASP 26 32 32 ASP ASP A . n A 1 27 THR 27 33 33 THR THR A . n A 1 28 THR 28 34 34 THR THR A . n A 1 29 ASN 29 35 35 ASN ASN A . n A 1 30 LEU 30 36 36 LEU LEU A . n A 1 31 ALA 31 37 37 ALA ALA A . n A 1 32 ALA 32 38 38 ALA ALA A . n A 1 33 LEU 33 39 39 LEU LEU A . n A 1 34 SER 34 40 40 SER SER A . n A 1 35 ILE 35 41 41 ILE ILE A . n A 1 36 PRO 36 42 42 PRO PRO A . n A 1 37 GLY 37 43 43 GLY GLY A . n A 1 38 THR 38 44 44 THR THR A . n A 1 39 HIS 39 45 45 HIS HIS A . n A 1 40 ASP 40 46 46 ASP ASP A . n A 1 41 THR 41 47 47 THR THR A . n A 1 42 MET 42 48 48 MET MET A . n A 1 43 SER 43 49 49 SER SER A . n A 1 44 TYR 44 50 50 TYR TYR A . n A 1 45 ASN 45 51 51 ASN ASN A . n A 1 46 GLY 46 52 52 GLY GLY A . n A 1 47 ASP 47 53 53 ASP ASP A . n A 1 48 ILE 48 54 54 ILE ILE A . n A 1 49 THR 49 55 55 THR THR A . n A 1 50 TRP 50 56 56 TRP TRP A . n A 1 51 THR 51 57 57 THR THR A . n A 1 52 LEU 52 58 58 LEU LEU A . n A 1 53 THR 53 59 59 THR THR A . n A 1 54 LYS 54 60 60 LYS LYS A . n A 1 55 PRO 55 61 61 PRO PRO A . n A 1 56 LEU 56 62 62 LEU LEU A . n A 1 57 ALA 57 63 63 ALA ALA A . n A 1 58 GLN 58 64 64 GLN GLN A . n A 1 59 THR 59 65 65 THR THR A . n A 1 60 GLN 60 66 66 GLN GLN A . n A 1 61 THR 61 67 67 THR THR A . n A 1 62 MET 62 68 68 MET MET A . n A 1 63 SER 63 69 69 SER SER A . n A 1 64 LEU 64 70 70 LEU LEU A . n A 1 65 TYR 65 71 71 TYR TYR A . n A 1 66 GLN 66 72 72 GLN GLN A . n A 1 67 GLN 67 73 73 GLN GLN A . n A 1 68 LEU 68 74 74 LEU LEU A . n A 1 69 GLU 69 75 75 GLU GLU A . n A 1 70 ALA 70 76 76 ALA ALA A . n A 1 71 GLY 71 77 77 GLY GLY A . n A 1 72 ILE 72 78 78 ILE ILE A . n A 1 73 ARG 73 79 79 ARG ARG A . n A 1 74 TYR 74 80 80 TYR TYR A . n A 1 75 ILE 75 81 81 ILE ILE A . n A 1 76 ASP 76 82 82 ASP ASP A . n A 1 77 ILE 77 83 83 ILE ILE A . n A 1 78 ARG 78 84 84 ARG ARG A . n A 1 79 ALA 79 85 85 ALA ALA A . n A 1 80 LYS 80 86 86 LYS LYS A . n A 1 81 ASP 81 87 87 ASP ASP A . n A 1 82 ASN 82 88 88 ASN ASN A . n A 1 83 LEU 83 89 89 LEU LEU A . n A 1 84 ASN 84 90 90 ASN ASN A . n A 1 85 ILE 85 91 91 ILE ILE A . n A 1 86 TYR 86 92 92 TYR TYR A . n A 1 87 HIS 87 93 93 HIS HIS A . n A 1 88 GLY 88 94 94 GLY GLY A . n A 1 89 PRO 89 95 95 PRO PRO A . n A 1 90 ILE 90 96 96 ILE ILE A . n A 1 91 PHE 91 97 97 PHE PHE A . n A 1 92 LEU 92 98 98 LEU LEU A . n A 1 93 ASN 93 99 99 ASN ASN A . n A 1 94 ALA 94 100 100 ALA ALA A . n A 1 95 SER 95 101 101 SER SER A . n A 1 96 LEU 96 102 102 LEU LEU A . n A 1 97 SER 97 103 103 SER SER A . n A 1 98 GLY 98 104 104 GLY GLY A . n A 1 99 VAL 99 105 105 VAL VAL A . n A 1 100 LEU 100 106 106 LEU LEU A . n A 1 101 GLU 101 107 107 GLU GLU A . n A 1 102 THR 102 108 108 THR THR A . n A 1 103 ILE 103 109 109 ILE ILE A . n A 1 104 THR 104 110 110 THR THR A . n A 1 105 GLN 105 111 111 GLN GLN A . n A 1 106 PHE 106 112 112 PHE PHE A . n A 1 107 LEU 107 113 113 LEU LEU A . n A 1 108 LYS 108 114 114 LYS LYS A . n A 1 109 LYS 109 115 115 LYS LYS A . n A 1 110 ASN 110 116 116 ASN ASN A . n A 1 111 PRO 111 117 117 PRO PRO A . n A 1 112 LYS 112 118 118 LYS LYS A . n A 1 113 GLU 113 119 119 GLU GLU A . n A 1 114 THR 114 120 120 THR THR A . n A 1 115 ILE 115 121 121 ILE ILE A . n A 1 116 ILE 116 122 122 ILE ILE A . n A 1 117 MET 117 123 123 MET MET A . n A 1 118 ARG 118 124 124 ARG ARG A . n A 1 119 LEU 119 125 125 LEU LEU A . n A 1 120 LYS 120 126 126 LYS LYS A . n A 1 121 ASP 121 127 127 ASP ASP A . n A 1 122 GLU 122 128 128 GLU GLU A . n A 1 123 GLN 123 129 129 GLN GLN A . n A 1 124 ASN 124 130 130 ASN ASN A . n A 1 125 SER 125 131 131 SER SER A . n A 1 126 ASN 126 132 132 ASN ASN A . n A 1 127 ASP 127 133 133 ASP ASP A . n A 1 128 SER 128 134 134 SER SER A . n A 1 129 PHE 129 135 135 PHE PHE A . n A 1 130 ASP 130 136 136 ASP ASP A . n A 1 131 TYR 131 137 137 TYR TYR A . n A 1 132 ARG 132 138 138 ARG ARG A . n A 1 133 ILE 133 139 139 ILE ILE A . n A 1 134 GLN 134 140 140 GLN GLN A . n A 1 135 PRO 135 141 141 PRO PRO A . n A 1 136 LEU 136 142 142 LEU LEU A . n A 1 137 ILE 137 143 143 ILE ILE A . n A 1 138 ASN 138 144 144 ASN ASN A . n A 1 139 ILE 139 145 145 ILE ILE A . n A 1 140 TYR 140 146 146 TYR TYR A . n A 1 141 LYS 141 147 147 LYS LYS A . n A 1 142 ASP 142 148 148 ASP ASP A . n A 1 143 TYR 143 149 149 TYR TYR A . n A 1 144 PHE 144 150 150 PHE PHE A . n A 1 145 TYR 145 151 151 TYR TYR A . n A 1 146 THR 146 152 152 THR THR A . n A 1 147 THR 147 153 153 THR THR A . n A 1 148 PRO 148 154 154 PRO PRO A . n A 1 149 ARG 149 155 155 ARG ARG A . n A 1 150 THR 150 156 156 THR THR A . n A 1 151 ASP 151 157 157 ASP ASP A . n A 1 152 THR 152 158 158 THR THR A . n A 1 153 SER 153 159 159 SER SER A . n A 1 154 ASN 154 160 160 ASN ASN A . n A 1 155 LYS 155 161 161 LYS LYS A . n A 1 156 ILE 156 162 162 ILE ILE A . n A 1 157 PRO 157 163 163 PRO PRO A . n A 1 158 THR 158 164 164 THR THR A . n A 1 159 LEU 159 165 165 LEU LEU A . n A 1 160 LYS 160 166 166 LYS LYS A . n A 1 161 ASP 161 167 167 ASP ASP A . n A 1 162 VAL 162 168 168 VAL VAL A . n A 1 163 ARG 163 169 169 ARG ARG A . n A 1 164 GLY 164 170 170 GLY GLY A . n A 1 165 LYS 165 171 171 LYS LYS A . n A 1 166 ILE 166 172 172 ILE ILE A . n A 1 167 LEU 167 173 173 LEU LEU A . n A 1 168 LEU 168 174 174 LEU LEU A . n A 1 169 LEU 169 175 175 LEU LEU A . n A 1 170 SER 170 176 176 SER SER A . n A 1 171 GLU 171 177 177 GLU GLU A . n A 1 172 ASN 172 178 178 ASN ASN A . n A 1 173 HIS 173 179 179 HIS HIS A . n A 1 174 THR 174 180 180 THR THR A . n A 1 175 LYS 175 181 181 LYS LYS A . n A 1 176 LYS 176 182 182 LYS LYS A . n A 1 177 PRO 177 183 183 PRO PRO A . n A 1 178 LEU 178 184 184 LEU LEU A . n A 1 179 VAL 179 185 185 VAL VAL A . n A 1 180 ILE 180 186 186 ILE ILE A . n A 1 181 ASN 181 187 187 ASN ASN A . n A 1 182 SER 182 188 188 SER SER A . n A 1 183 ARG 183 189 189 ARG ARG A . n A 1 184 LYS 184 190 190 LYS LYS A . n A 1 185 PHE 185 191 191 PHE PHE A . n A 1 186 GLY 186 192 192 GLY GLY A . n A 1 187 MET 187 193 193 MET MET A . n A 1 188 GLN 188 194 194 GLN GLN A . n A 1 189 PHE 189 195 195 PHE PHE A . n A 1 190 GLY 190 196 196 GLY GLY A . n A 1 191 ALA 191 197 197 ALA ALA A . n A 1 192 PRO 192 198 198 PRO PRO A . n A 1 193 ASN 193 199 199 ASN ASN A . n A 1 194 GLN 194 200 200 GLN GLN A . n A 1 195 VAL 195 201 201 VAL VAL A . n A 1 196 ILE 196 202 202 ILE ILE A . n A 1 197 GLN 197 203 203 GLN GLN A . n A 1 198 ASP 198 204 204 ASP ASP A . n A 1 199 ASP 199 205 205 ASP ASP A . n A 1 200 TYR 200 206 206 TYR TYR A . n A 1 201 ASN 201 207 207 ASN ASN A . n A 1 202 GLY 202 208 208 GLY GLY A . n A 1 203 PRO 203 209 209 PRO PRO A . n A 1 204 SER 204 210 210 SER SER A . n A 1 205 VAL 205 211 211 VAL VAL A . n A 1 206 LYS 206 212 212 LYS LYS A . n A 1 207 THR 207 213 213 THR THR A . n A 1 208 LYS 208 214 214 LYS LYS A . n A 1 209 PHE 209 215 215 PHE PHE A . n A 1 210 LYS 210 216 216 LYS LYS A . n A 1 211 GLU 211 217 217 GLU GLU A . n A 1 212 ILE 212 218 218 ILE ILE A . n A 1 213 VAL 213 219 219 VAL VAL A . n A 1 214 GLN 214 220 220 GLN GLN A . n A 1 215 THR 215 221 221 THR THR A . n A 1 216 ALA 216 222 222 ALA ALA A . n A 1 217 TYR 217 223 223 TYR TYR A . n A 1 218 GLN 218 224 224 GLN GLN A . n A 1 219 ALA 219 225 225 ALA ALA A . n A 1 220 SER 220 226 226 SER SER A . n A 1 221 LYS 221 227 227 LYS LYS A . n A 1 222 ALA 222 228 228 ALA ALA A . n A 1 223 ASP 223 229 229 ASP ASP A . n A 1 224 ASN 224 230 230 ASN ASN A . n A 1 225 LYS 225 231 231 LYS LYS A . n A 1 226 LEU 226 232 232 LEU LEU A . n A 1 227 PHE 227 233 233 PHE PHE A . n A 1 228 LEU 228 234 234 LEU LEU A . n A 1 229 ASN 229 235 235 ASN ASN A . n A 1 230 HIS 230 236 236 HIS HIS A . n A 1 231 ILE 231 237 237 ILE ILE A . n A 1 232 SER 232 238 238 SER SER A . n A 1 233 ALA 233 239 239 ALA ALA A . n A 1 234 THR 234 240 240 THR THR A . n A 1 235 SER 235 241 241 SER SER A . n A 1 236 LEU 236 242 242 LEU LEU A . n A 1 237 THR 237 243 243 THR THR A . n A 1 238 PHE 238 244 244 PHE PHE A . n A 1 239 THR 239 245 245 THR THR A . n A 1 240 PRO 240 246 246 PRO PRO A . n A 1 241 ARG 241 247 247 ARG ARG A . n A 1 242 GLN 242 248 248 GLN GLN A . n A 1 243 TYR 243 249 249 TYR TYR A . n A 1 244 ALA 244 250 250 ALA ALA A . n A 1 245 ALA 245 251 251 ALA ALA A . n A 1 246 ALA 246 252 252 ALA ALA A . n A 1 247 LEU 247 253 253 LEU LEU A . n A 1 248 ASN 248 254 254 ASN ASN A . n A 1 249 ASN 249 255 255 ASN ASN A . n A 1 250 LYS 250 256 256 LYS LYS A . n A 1 251 VAL 251 257 257 VAL VAL A . n A 1 252 GLU 252 258 258 GLU GLU A . n A 1 253 GLN 253 259 259 GLN GLN A . n A 1 254 PHE 254 260 260 PHE PHE A . n A 1 255 VAL 255 261 261 VAL VAL A . n A 1 256 LEU 256 262 262 LEU LEU A . n A 1 257 ASN 257 263 263 ASN ASN A . n A 1 258 LEU 258 264 264 LEU LEU A . n A 1 259 THR 259 265 265 THR THR A . n A 1 260 SER 260 266 266 SER SER A . n A 1 261 GLU 261 267 267 GLU GLU A . n A 1 262 LYS 262 268 268 LYS LYS A . n A 1 263 VAL 263 269 269 VAL VAL A . n A 1 264 ARG 264 270 270 ARG ARG A . n A 1 265 GLY 265 271 271 GLY GLY A . n A 1 266 LEU 266 272 272 LEU LEU A . n A 1 267 GLY 267 273 273 GLY GLY A . n A 1 268 ILE 268 274 274 ILE ILE A . n A 1 269 LEU 269 275 275 LEU LEU A . n A 1 270 ILE 270 276 276 ILE ILE A . n A 1 271 MET 271 277 277 MET MET A . n A 1 272 ASP 272 278 278 ASP ASP A . n A 1 273 PHE 273 279 279 PHE PHE A . n A 1 274 PRO 274 280 280 PRO PRO A . n A 1 275 GLU 275 281 281 GLU GLU A . n A 1 276 LYS 276 282 282 LYS LYS A . n A 1 277 GLN 277 283 283 GLN GLN A . n A 1 278 THR 278 284 284 THR THR A . n A 1 279 ILE 279 285 285 ILE ILE A . n A 1 280 LYS 280 286 286 LYS LYS A . n A 1 281 ASN 281 287 287 ASN ASN A . n A 1 282 ILE 282 288 288 ILE ILE A . n A 1 283 ILE 283 289 289 ILE ILE A . n A 1 284 LYS 284 290 290 LYS LYS A . n A 1 285 ASN 285 291 291 ASN ASN A . n A 1 286 ASN 286 292 292 ASN ASN A . n A 1 287 LYS 287 293 293 LYS LYS A . n A 1 288 PHE 288 294 294 PHE PHE A . n A 1 289 ASN 289 295 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 INS 1 296 295 INS INS A . C 3 HOH 1 297 296 HOH HOH A . C 3 HOH 2 298 297 HOH HOH A . C 3 HOH 3 299 298 HOH HOH A . C 3 HOH 4 300 299 HOH HOH A . C 3 HOH 5 301 300 HOH HOH A . C 3 HOH 6 302 301 HOH HOH A . C 3 HOH 7 303 302 HOH HOH A . C 3 HOH 8 304 303 HOH HOH A . C 3 HOH 9 305 304 HOH HOH A . C 3 HOH 10 306 305 HOH HOH A . C 3 HOH 11 307 306 HOH HOH A . C 3 HOH 12 308 307 HOH HOH A . C 3 HOH 13 309 308 HOH HOH A . C 3 HOH 14 310 309 HOH HOH A . C 3 HOH 15 311 310 HOH HOH A . C 3 HOH 16 312 311 HOH HOH A . C 3 HOH 17 313 312 HOH HOH A . C 3 HOH 18 314 313 HOH HOH A . C 3 HOH 19 315 314 HOH HOH A . C 3 HOH 20 316 315 HOH HOH A . C 3 HOH 21 317 316 HOH HOH A . C 3 HOH 22 318 317 HOH HOH A . C 3 HOH 23 319 318 HOH HOH A . C 3 HOH 24 320 319 HOH HOH A . C 3 HOH 25 321 320 HOH HOH A . C 3 HOH 26 322 321 HOH HOH A . C 3 HOH 27 323 322 HOH HOH A . C 3 HOH 28 324 323 HOH HOH A . C 3 HOH 29 325 324 HOH HOH A . C 3 HOH 30 326 325 HOH HOH A . C 3 HOH 31 327 326 HOH HOH A . C 3 HOH 32 328 327 HOH HOH A . C 3 HOH 33 329 328 HOH HOH A . C 3 HOH 34 330 329 HOH HOH A . C 3 HOH 35 331 330 HOH HOH A . C 3 HOH 36 332 331 HOH HOH A . C 3 HOH 37 333 332 HOH HOH A . C 3 HOH 38 334 333 HOH HOH A . C 3 HOH 39 335 334 HOH HOH A . C 3 HOH 40 336 335 HOH HOH A . C 3 HOH 41 337 336 HOH HOH A . C 3 HOH 42 338 337 HOH HOH A . C 3 HOH 43 339 338 HOH HOH A . C 3 HOH 44 340 339 HOH HOH A . C 3 HOH 45 341 340 HOH HOH A . C 3 HOH 46 342 341 HOH HOH A . C 3 HOH 47 343 342 HOH HOH A . C 3 HOH 48 344 343 HOH HOH A . C 3 HOH 49 345 344 HOH HOH A . C 3 HOH 50 346 345 HOH HOH A . C 3 HOH 51 347 346 HOH HOH A . C 3 HOH 52 348 347 HOH HOH A . C 3 HOH 53 349 348 HOH HOH A . C 3 HOH 54 350 349 HOH HOH A . C 3 HOH 55 351 350 HOH HOH A . C 3 HOH 56 352 351 HOH HOH A . C 3 HOH 57 353 352 HOH HOH A . C 3 HOH 58 354 353 HOH HOH A . C 3 HOH 59 355 354 HOH HOH A . C 3 HOH 60 356 355 HOH HOH A . C 3 HOH 61 357 356 HOH HOH A . C 3 HOH 62 358 357 HOH HOH A . C 3 HOH 63 359 358 HOH HOH A . C 3 HOH 64 360 359 HOH HOH A . C 3 HOH 65 361 360 HOH HOH A . C 3 HOH 66 362 361 HOH HOH A . C 3 HOH 67 363 362 HOH HOH A . C 3 HOH 68 364 363 HOH HOH A . C 3 HOH 69 365 364 HOH HOH A . C 3 HOH 70 366 365 HOH HOH A . C 3 HOH 71 367 366 HOH HOH A . C 3 HOH 72 368 367 HOH HOH A . C 3 HOH 73 369 368 HOH HOH A . C 3 HOH 74 370 369 HOH HOH A . C 3 HOH 75 371 370 HOH HOH A . C 3 HOH 76 372 371 HOH HOH A . C 3 HOH 77 373 372 HOH HOH A . C 3 HOH 78 374 373 HOH HOH A . C 3 HOH 79 375 374 HOH HOH A . C 3 HOH 80 376 375 HOH HOH A . C 3 HOH 81 377 376 HOH HOH A . C 3 HOH 82 378 377 HOH HOH A . C 3 HOH 83 379 378 HOH HOH A . C 3 HOH 84 380 379 HOH HOH A . C 3 HOH 85 381 380 HOH HOH A . C 3 HOH 86 382 381 HOH HOH A . C 3 HOH 87 383 382 HOH HOH A . C 3 HOH 88 384 383 HOH HOH A . C 3 HOH 89 385 384 HOH HOH A . C 3 HOH 90 386 385 HOH HOH A . C 3 HOH 91 387 386 HOH HOH A . C 3 HOH 92 388 387 HOH HOH A . C 3 HOH 93 389 388 HOH HOH A . C 3 HOH 94 390 389 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-01-07 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' diffrn_source 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_pdbx_database_status.process_site' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.8 ? 1 X-PLOR refinement 3.8 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 X-PLOR phasing 3.8 ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 53 ? ? -75.12 -169.40 2 1 ASP A 87 ? ? -56.89 -4.84 3 1 ASN A 130 ? ? -55.66 11.19 4 1 ASN A 160 ? ? 52.62 -5.35 5 1 ASN A 187 ? ? 66.60 -126.43 6 1 ASN A 207 ? ? -64.04 80.61 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 71 ? CG ? A TYR 65 CG 2 1 Y 1 A TYR 71 ? CD1 ? A TYR 65 CD1 3 1 Y 1 A TYR 71 ? CD2 ? A TYR 65 CD2 4 1 Y 1 A TYR 71 ? CE1 ? A TYR 65 CE1 5 1 Y 1 A TYR 71 ? CE2 ? A TYR 65 CE2 6 1 Y 1 A TYR 71 ? CZ ? A TYR 65 CZ 7 1 Y 1 A TYR 71 ? OH ? A TYR 65 OH # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 7 ? A ALA 1 2 1 Y 1 A TYR 8 ? A TYR 2 3 1 Y 1 A SER 9 ? A SER 3 4 1 Y 1 A LEU 10 ? A LEU 4 5 1 Y 1 A ASN 11 ? A ASN 5 6 1 Y 1 A ASN 12 ? A ASN 6 7 1 Y 1 A TRP 13 ? A TRP 7 8 1 Y 1 A ASN 14 ? A ASN 8 9 1 Y 1 A LYS 15 ? A LYS 9 10 1 Y 1 A PRO 16 ? A PRO 10 11 1 Y 1 A ILE 17 ? A ILE 11 12 1 Y 1 A LYS 18 ? A LYS 12 13 1 Y 1 A ASN 19 ? A ASN 13 14 1 Y 1 A SER 20 ? A SER 14 15 1 Y 1 A ASN 295 ? A ASN 289 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE INS 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PTD _pdbx_initial_refinement_model.details 'PDB ENTRY 1PTD' #