HEADER COMPLEMENT 22-JUL-97 1APQ TITLE STRUCTURE OF THE EGF-LIKE MODULE OF HUMAN C1R, NMR, 19 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT PROTEASE C1R; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EGF-LIKE MODULE; COMPND 5 EC: 3.4.21.41; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CALCIUM-BINDING CONSENSUS SEQUENCE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS COMPLEMENT, EGF, CALCIUM BINDING, SERINE PROTEASE EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR B.BERSCH,J.-F.HERNANDEZ,D.MARION,G.J.ARLAUD REVDAT 4 13-NOV-24 1APQ 1 REMARK REVDAT 3 16-FEB-22 1APQ 1 REMARK REVDAT 2 24-FEB-09 1APQ 1 VERSN REVDAT 1 17-SEP-97 1APQ 0 JRNL AUTH B.BERSCH,J.F.HERNANDEZ,D.MARION,G.J.ARLAUD JRNL TITL SOLUTION STRUCTURE OF THE EPIDERMAL GROWTH FACTOR (EGF)-LIKE JRNL TITL 2 MODULE OF HUMAN COMPLEMENT PROTEASE C1R, AN ATYPICAL MEMBER JRNL TITL 3 OF THE EGF FAMILY. JRNL REF BIOCHEMISTRY V. 37 1204 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9477945 JRNL DOI 10.1021/BI971851V REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.-F.HERNANDEZ,B.BERSCH,Y.PETILLOT,J.GAGNON,G.J.ARLAUD REMARK 1 TITL CHEMICAL SYNTHESIS AND CHARACTERIZATION OF THE EGF-LIKE REMARK 1 TITL 2 MODULE OF HUMAN COMPLEMENT PROTEASE C1R REMARK 1 REF J.PEPT.RES. V. 49 221 1997 REMARK 1 REFN ISSN 1397-002X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER (MODIFICATION OF ST ST REMARK 3 AUTHORS : BIOSYM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 FOLLOWING JOURNAL CITATION : BLACKLEDGE ET AL., J. MOL. BIOL. REMARK 3 245, 661-681 (1995). REMARK 4 REMARK 4 1APQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171105. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX-600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DISCOVER REMARK 210 METHOD USED : SIMULATED ANNEALING, RESTRAINED REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : EXPERIMENTAL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 CYS A 48 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 2 CYS A 48 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 9 CYS A 48 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 12 CYS A 48 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 15 CYS A 48 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 18 CYS A 48 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 19 CYS A 48 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 33 -149.18 53.03 REMARK 500 1 ASP A 39 117.58 -168.71 REMARK 500 1 GLN A 43 102.96 -59.33 REMARK 500 1 CYS A 44 53.63 73.61 REMARK 500 1 HIS A 46 -83.58 -101.64 REMARK 500 1 PRO A 61 156.67 -47.02 REMARK 500 1 HIS A 70 -37.50 -158.21 REMARK 500 2 VAL A 24 -56.77 76.40 REMARK 500 2 LEU A 26 174.64 -55.50 REMARK 500 2 ASP A 27 92.59 65.93 REMARK 500 2 GLU A 28 -60.08 -153.07 REMARK 500 2 ARG A 32 -110.84 49.42 REMARK 500 2 LYS A 34 -62.60 67.95 REMARK 500 2 SER A 35 57.15 -151.59 REMARK 500 2 GLU A 38 151.90 76.41 REMARK 500 2 ASP A 39 75.78 -154.85 REMARK 500 2 PRO A 42 90.21 -17.80 REMARK 500 2 GLN A 45 -62.45 -6.97 REMARK 500 2 HIS A 46 -79.97 -88.00 REMARK 500 2 ARG A 69 43.17 85.26 REMARK 500 3 SER A 35 65.93 28.62 REMARK 500 3 GLU A 37 -70.05 66.45 REMARK 500 3 ASP A 39 130.96 166.44 REMARK 500 3 GLN A 43 -1.10 68.13 REMARK 500 3 GLN A 45 -85.66 -31.44 REMARK 500 3 HIS A 46 -72.89 -124.87 REMARK 500 3 PHE A 56 -72.04 -92.93 REMARK 500 3 CYS A 57 167.36 104.34 REMARK 500 3 HIS A 70 -27.41 -152.14 REMARK 500 4 GLU A 28 99.27 -36.73 REMARK 500 4 ALA A 30 -75.73 -120.48 REMARK 500 4 ARG A 32 168.82 63.28 REMARK 500 4 SER A 35 71.40 -68.42 REMARK 500 4 ASP A 39 -61.42 -155.54 REMARK 500 4 PRO A 42 170.93 -54.95 REMARK 500 4 GLN A 43 -111.31 -77.51 REMARK 500 4 CYS A 44 164.19 156.16 REMARK 500 4 HIS A 46 -94.12 -105.36 REMARK 500 5 GLU A 28 -36.12 -39.26 REMARK 500 5 SER A 35 -11.98 -150.33 REMARK 500 5 ASP A 39 92.16 -166.20 REMARK 500 5 GLN A 43 109.42 -58.92 REMARK 500 5 GLN A 45 -96.12 -60.44 REMARK 500 5 HIS A 46 -82.36 -83.46 REMARK 500 5 GLU A 67 -52.00 73.36 REMARK 500 5 ASP A 68 -24.19 114.13 REMARK 500 6 SER A 33 -63.15 -170.76 REMARK 500 6 LYS A 34 77.53 -63.94 REMARK 500 6 SER A 35 -68.90 -157.25 REMARK 500 6 ASP A 39 80.93 71.81 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 TYR A 63 0.08 SIDE CHAIN REMARK 500 3 ARG A 69 0.10 SIDE CHAIN REMARK 500 4 ARG A 60 0.08 SIDE CHAIN REMARK 500 5 TYR A 63 0.10 SIDE CHAIN REMARK 500 6 PHE A 56 0.09 SIDE CHAIN REMARK 500 8 HIS A 46 0.10 SIDE CHAIN REMARK 500 9 TYR A 55 0.08 SIDE CHAIN REMARK 500 12 TYR A 55 0.06 SIDE CHAIN REMARK 500 12 TYR A 63 0.09 SIDE CHAIN REMARK 500 13 TYR A 55 0.12 SIDE CHAIN REMARK 500 13 TYR A 63 0.14 SIDE CHAIN REMARK 500 15 HIS A 46 0.10 SIDE CHAIN REMARK 500 19 TYR A 55 0.11 SIDE CHAIN REMARK 500 19 TYR A 63 0.12 SIDE CHAIN REMARK 500 19 ARG A 69 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: PROBABLE CALCIUM BINDING SITE. DBREF 1APQ A 23 75 UNP P00736 C1R_HUMAN 140 192 SEQRES 1 A 53 ALA VAL ASP LEU ASP GLU CYS ALA SER ARG SER LYS SER SEQRES 2 A 53 GLY GLU GLU ASP PRO GLN PRO GLN CYS GLN HIS LEU CYS SEQRES 3 A 53 HIS ASN TYR VAL GLY GLY TYR PHE CYS SER CYS ARG PRO SEQRES 4 A 53 GLY TYR GLU LEU GLN GLU ASP ARG HIS SER CYS GLN ALA SEQRES 5 A 53 GLU SHEET 1 A 2 LEU A 47 TYR A 51 0 SHEET 2 A 2 GLY A 54 SER A 58 -1 N SER A 58 O LEU A 47 SSBOND 1 CYS A 29 CYS A 48 1555 1555 2.08 SSBOND 2 CYS A 44 CYS A 57 1555 1555 2.07 SSBOND 3 CYS A 59 CYS A 72 1555 1555 2.07 SITE 1 CAB 5 ASP A 25 LEU A 26 GLU A 28 ASN A 50 SITE 2 CAB 5 TYR A 51 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1