HEADER COMPLEX (RIBONUCLEIC ACID/AMP) 12-JUN-96 1ARA OBSLTE 23-JUL-97 1ARA 1AM0 TITLE AMP RNA APTAMER COMPLEX, NMR, 8 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA APTAMER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA APTAMER; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: AMP; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 SYNTHETIC: YES KEYWDS RNA APTAMER, GNRA MOTIF, G(DOT)G MISMATCH, G(DOT)A MISMATCH, KEYWDS 2 COMPLEX (RIBONUCLEIC ACID/AMP) EXPDTA NMR, 8 STRUCTURES AUTHOR F.JIANG,R.A.KUMAR,R.A.JONES,D.J.PATEL REVDAT 1 27-JAN-97 1ARA 0 JRNL AUTH F.JIANG,R.A.KUMAR,R.A.JONES,D.J.PATEL JRNL TITL STRUCTURAL BASIS OF RNA FOLDING AND RECOGNITION IN JRNL TITL 2 AN AMP-RNA APTAMER COMPLEX JRNL REF NATURE V. 382 183 1996 JRNL REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.R.LORSCH,J.W.SZOSTAK REMARK 1 TITL IN VITRO EVOLUTION OF NEW RIBOZYMES WITH REMARK 1 TITL 2 POLYNUCLEOTIDE KINASE ACTIVITY REMARK 1 REF NATURE V. 371 31 1994 REMARK 1 REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.SASSANFAR,J.W.SZOSTAK REMARK 1 TITL AN RNA MOTIF THAT BINDS ATP REMARK 1 REF NATURE V. 364 550 1993 REMARK 1 REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1F 3.1F REMARK 3 AUTHORS : BRUNGER NUMBER OF NON-HYDROGEN ATOMS USED IN REMARK 3 REFINEMENT. PROTEIN ATOMS : 0 NUCLEIC ACID ATOMS REMARK 3 : 560 HETEROGEN ATOMS : 0 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FORCE FIELD DERIVED FROM CHARMM A REMARK 3 SET OF 8 STRUCTURES WERE OBTAINED USING METRIC MATRIX DISTANCE REMARK 3 GEOMETRY, AND DISTANCE-RESTRAINED MOLECULAR DYNAMICS USING A REMARK 3 SET OF INTER-PROTON DISTANCES DERIVED FROM THE NMR DATA. REMARK 4 REMARK 4 1ARA COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.100 (2007-03-19) REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : IN D2O - NOESY, COSY, TOCSY, REMARK 210 2D (1)H-(31)P COSY, 2D(1)H- REMARK 210 (13)C CT HSQC, 3D (1)H-(13)C- REMARK 210 (1)H NOESY-HMQC, HCCH-TOCSY, REMARK 210 HCCH-COSY. DISTANCE RESTRAINTS REMARK 210 FROM 120 MS NOESY AND 120 MS REMARK 210 3D NOESY-HMQC. IN H2O - 2D (1) REMARK 210 H-(15)N HSQC, 2D (1)H-(13)C, REMARK 210 (1)H-(15)N HMQC-NOESY, 2D (1)H REMARK 210 -(1)H, (1)H-(13)C HCCNH-TOCSY. REMARK 210 DISTANCE RESTRAINTS FROM 100 REMARK 210 MS NOESY. REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMR SPECTRAL PROCESSING - REMARK 210 VARIAN VNMR (2D) (2D), NMRPIPE REMARK 210 (3D) NMR SPECTRAL ANALYSIS - REMARK 210 FELIX DISTANCE FROM NOE VOLUME REMARK 210 - RPEAK STRUCTURE REMARK 210 DETERMINATION - X-PLOR 3.1F REMARK 210 CTURE DETERMINATION - X-PLOR REMARK 210 3.1F REMARK 210 METHOD USED : DISTANCE GEOMETRY AND REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 8 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: BUFFER: 10 MILLIMOLAR SODIUM PHOSPHATE, 0.2 MILLIMOLAR REMARK 210 EDTA CONCENTRATION: 2 TO 3 MILLIMOLAR NMR INSTRUMENT: VARIAN REMARK 210 UNITYPLUS 600, 500 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. DBREF 1ARA A 6 18 PDB 1ARA 1ARA 6 18 DBREF 1ARA B 33 35 PDB 1ARA 1ARA 33 35 DBREF 1ARA C 41 41 PDB 1ARA 1ARA 41 41 SEQRES 1 A 13 G G G A A G A A A C U G U SEQRES 1 B 3 A G C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1