data_1ASW # _entry.id 1ASW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1ASW WWPDB D_1000171217 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ASW _pdbx_database_status.recvd_initial_deposition_date 1995-08-25 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site ? _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bujacz, G.' 1 'Jaskolski, M.' 2 'Alexandratos, J.' 3 'Wlodawer, A.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'High-resolution structure of the catalytic domain of avian sarcoma virus integrase.' J.Mol.Biol. 253 333 346 1995 JMOBAK UK 0022-2836 0070 ? 7563093 10.1006/jmbi.1995.0556 1 'Expression, Purification, and Crystallization of Natural and Selenomethionyl Recombinant Ribonuclease H from Escherichia Coli' J.Biol.Chem. 265 13553 ? 1990 JBCHA3 US 0021-9258 0071 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bujacz, G.' 1 primary 'Jaskolski, M.' 2 primary 'Alexandratos, J.' 3 primary 'Wlodawer, A.' 4 primary 'Merkel, G.' 5 primary 'Katz, R.A.' 6 primary 'Skalka, A.M.' 7 1 'Yang, W.' 8 1 'Hendrickson, W.A.' 9 1 'Kalman, E.T.' 10 1 'Crouch, R.J.' 11 # _cell.entry_id 1ASW _cell.length_a 65.400 _cell.length_b 65.400 _cell.length_c 80.410 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ASW _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'AVIAN SARCOMA VIRUS INTEGRASE' 18083.082 1 ? 'INS(PRO 48, LEU 49, ARG 50, GLU 51, ASN 208, LEU 209)' ? ;CRYSTALLIZED FROM 20% PEG 4000, 10% ISOPROPANOL, HEPES PH 7.5 USING SELENOMETHIONINE-SUBSTITUTED PROTEIN, DATA COLLECTED AT LOW TEMPERATURE ; 2 non-polymer syn '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 238.305 1 ? ? ? ? 3 non-polymer syn 'ISOPROPYL ALCOHOL' 60.095 1 ? ? ? ? 4 water nat water 18.015 187 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;PLREPRGLGPLQIWQTDFTLEPR(MSE)APRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNG SCFTSKSTREWLARWGIAHTTGIPGNSQGQA(MSE)VERANRLLKDKIRVLAEGDGF(MSE)KRIPTSKQGELLAKA (MSE)YALNHFERGENTKTNL ; _entity_poly.pdbx_seq_one_letter_code_can ;PLREPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFT SKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKT NL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 LEU n 1 3 ARG n 1 4 GLU n 1 5 PRO n 1 6 ARG n 1 7 GLY n 1 8 LEU n 1 9 GLY n 1 10 PRO n 1 11 LEU n 1 12 GLN n 1 13 ILE n 1 14 TRP n 1 15 GLN n 1 16 THR n 1 17 ASP n 1 18 PHE n 1 19 THR n 1 20 LEU n 1 21 GLU n 1 22 PRO n 1 23 ARG n 1 24 MSE n 1 25 ALA n 1 26 PRO n 1 27 ARG n 1 28 SER n 1 29 TRP n 1 30 LEU n 1 31 ALA n 1 32 VAL n 1 33 THR n 1 34 VAL n 1 35 ASP n 1 36 THR n 1 37 ALA n 1 38 SER n 1 39 SER n 1 40 ALA n 1 41 ILE n 1 42 VAL n 1 43 VAL n 1 44 THR n 1 45 GLN n 1 46 HIS n 1 47 GLY n 1 48 ARG n 1 49 VAL n 1 50 THR n 1 51 SER n 1 52 VAL n 1 53 ALA n 1 54 ALA n 1 55 GLN n 1 56 HIS n 1 57 HIS n 1 58 TRP n 1 59 ALA n 1 60 THR n 1 61 ALA n 1 62 ILE n 1 63 ALA n 1 64 VAL n 1 65 LEU n 1 66 GLY n 1 67 ARG n 1 68 PRO n 1 69 LYS n 1 70 ALA n 1 71 ILE n 1 72 LYS n 1 73 THR n 1 74 ASP n 1 75 ASN n 1 76 GLY n 1 77 SER n 1 78 CYS n 1 79 PHE n 1 80 THR n 1 81 SER n 1 82 LYS n 1 83 SER n 1 84 THR n 1 85 ARG n 1 86 GLU n 1 87 TRP n 1 88 LEU n 1 89 ALA n 1 90 ARG n 1 91 TRP n 1 92 GLY n 1 93 ILE n 1 94 ALA n 1 95 HIS n 1 96 THR n 1 97 THR n 1 98 GLY n 1 99 ILE n 1 100 PRO n 1 101 GLY n 1 102 ASN n 1 103 SER n 1 104 GLN n 1 105 GLY n 1 106 GLN n 1 107 ALA n 1 108 MSE n 1 109 VAL n 1 110 GLU n 1 111 ARG n 1 112 ALA n 1 113 ASN n 1 114 ARG n 1 115 LEU n 1 116 LEU n 1 117 LYS n 1 118 ASP n 1 119 LYS n 1 120 ILE n 1 121 ARG n 1 122 VAL n 1 123 LEU n 1 124 ALA n 1 125 GLU n 1 126 GLY n 1 127 ASP n 1 128 GLY n 1 129 PHE n 1 130 MSE n 1 131 LYS n 1 132 ARG n 1 133 ILE n 1 134 PRO n 1 135 THR n 1 136 SER n 1 137 LYS n 1 138 GLN n 1 139 GLY n 1 140 GLU n 1 141 LEU n 1 142 LEU n 1 143 ALA n 1 144 LYS n 1 145 ALA n 1 146 MSE n 1 147 TYR n 1 148 ALA n 1 149 LEU n 1 150 ASN n 1 151 HIS n 1 152 PHE n 1 153 GLU n 1 154 ARG n 1 155 GLY n 1 156 GLU n 1 157 ASN n 1 158 THR n 1 159 LYS n 1 160 THR n 1 161 ASN n 1 162 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Alpharetrovirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'SCHMIDT-RUPPIN B' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Avian sarcoma virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11876 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PRC23IN(52-207)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_RSVP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P03354 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAK LVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLV VGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKVQREPGVQYLGYKLGSTYVAPVGL VAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVRLSTTAALERWDPALPL EGAVARCEQGAIGVLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLP EGILLALKGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTDASSSTHKGVVVWREGPRWEIKEIADLGASV QQLEARAVAMALLLWPTTPTNVVTDSAFVAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGN DVADSQATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLE PRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPG NSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRI ETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPLFAGISDWIPWEDEQEGLQGETASN KQERPGEDTLAANES ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ASW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 160 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P03354 _struct_ref_seq.db_align_beg 624 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 779 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 52 _struct_ref_seq.pdbx_auth_seq_align_end 207 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1ASW MSE A 24 ? UNP P03354 MET 643 CONFLICT 71 1 1 1ASW ALA A 54 ? UNP P03354 VAL 673 CONFLICT 101 2 1 1ASW MSE A 108 ? UNP P03354 MET 727 CONFLICT 155 3 1 1ASW LYS A 119 ? UNP P03354 ARG 738 CONFLICT 166 4 1 1ASW MSE A 130 ? UNP P03354 MET 749 CONFLICT 177 5 1 1ASW MSE A 146 ? UNP P03354 MET 765 CONFLICT 193 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EPE non-polymer . '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' HEPES 'C8 H18 N2 O4 S' 238.305 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IPA non-polymer . 'ISOPROPYL ALCOHOL' 2-PROPANOL 'C3 H8 O' 60.095 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ASW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_percent_sol 48.24 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 108 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 1995-02-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9464 1.0 2 0.9792 1.0 3 0.9790 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F2' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9464, 0.9792, 0.9790' # _reflns.entry_id 1ASW _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.0 _reflns.d_resolution_high 1.8 _reflns.number_obs 12157 _reflns.number_all ? _reflns.percent_possible_obs 94.2 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.07 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1ASW _refine.ls_number_reflns_obs 10188 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.0 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 72.3 _refine.ls_R_factor_obs 0.139 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.208 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 18.24 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1183 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 191 _refine_hist.number_atoms_total 1389 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 6.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.013 0.017 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.047 0.043 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.050 0.058 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 2.299 2.500 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 3.388 3.500 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 4.689 4.000 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 6.271 7.000 ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.016 0.022 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.168 0.180 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.205 0.500 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.229 0.500 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd 0.225 0.500 ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 2.6 3.6 ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 16.5 15.0 ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor 38.6 12.0 ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1ASW _struct.title ;AVIAN SARCOMA VIRUS INTEGRASE CATALYTIC CORE DOMAIN CRYSTALLIZED FROM 20% PEG 4000, 10% ISOPROPANOL, HEPES PH 7.5 USING SELENOMETHIONINE SUBSTITUTED PROTEIN; DATA COLLECTED AT-165 DEGREES C ; _struct.pdbx_descriptor 'AVIAN SARCOMA VIRUS INTEGRASE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ASW _struct_keywords.pdbx_keywords 'DNA INTEGRATION' _struct_keywords.text 'DNA INTEGRATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 2 SER A 51 ? LEU A 65 ? SER A 98 LEU A 112 1 ? 15 HELX_P HELX_P2 3 SER A 77 ? THR A 80 ? SER A 124 THR A 127 1 ? 4 HELX_P HELX_P3 4 LYS A 82 ? TRP A 91 ? LYS A 129 TRP A 138 1 ? 10 HELX_P HELX_P4 5 ALA A 107 ? ASP A 127 ? ALA A 154 ASP A 174 1 ? 21 HELX_P HELX_P5 6 THR A 135 ? ASN A 150 ? THR A 182 ASN A 197 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 23 C ? ? ? 1_555 A MSE 24 N ? ? A ARG 70 A MSE 71 1_555 ? ? ? ? ? ? ? 1.318 ? covale2 covale ? ? A MSE 24 C ? ? ? 1_555 A ALA 25 N ? ? A MSE 71 A ALA 72 1_555 ? ? ? ? ? ? ? 1.323 ? covale3 covale ? ? A ALA 107 C ? ? ? 1_555 A MSE 108 N ? ? A ALA 154 A MSE 155 1_555 ? ? ? ? ? ? ? 1.337 ? covale4 covale ? ? A MSE 108 C ? ? ? 1_555 A VAL 109 N ? ? A MSE 155 A VAL 156 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? A PHE 129 C ? ? ? 1_555 A MSE 130 N ? ? A PHE 176 A MSE 177 1_555 ? ? ? ? ? ? ? 1.361 ? covale6 covale ? ? A MSE 130 C ? ? ? 1_555 A LYS 131 N ? ? A MSE 177 A LYS 178 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? A ALA 145 C ? ? ? 1_555 A MSE 146 N ? ? A ALA 192 A MSE 193 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale ? ? A MSE 146 C ? ? ? 1_555 A TYR 147 N ? ? A MSE 193 A TYR 194 1_555 ? ? ? ? ? ? ? 1.338 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 25 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 72 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 26 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 73 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.84 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 40 ? HIS A 46 ? ALA A 87 HIS A 93 A 2 TRP A 29 ? THR A 36 ? TRP A 76 THR A 83 A 3 ILE A 13 ? PRO A 22 ? ILE A 60 PRO A 69 A 4 ALA A 70 ? THR A 73 ? ALA A 117 THR A 120 A 5 ILE A 93 ? THR A 96 ? ILE A 140 THR A 143 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details ACT Author ? ? ? ? 3 'ACTIVE SITE' AC1 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE EPE A 252' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IPA A 253' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 ACT 3 ASP A 17 ? ASP A 64 . ? 1_555 ? 2 ACT 3 ASP A 74 ? ASP A 121 . ? 1_555 ? 3 ACT 3 GLU A 110 ? GLU A 157 . ? 1_555 ? 4 AC1 15 PRO A 26 ? PRO A 73 . ? 1_555 ? 5 AC1 15 SER A 28 ? SER A 75 . ? 1_555 ? 6 AC1 15 TRP A 29 ? TRP A 76 . ? 1_555 ? 7 AC1 15 ARG A 48 ? ARG A 95 . ? 1_555 ? 8 AC1 15 VAL A 49 ? VAL A 96 . ? 1_555 ? 9 AC1 15 ARG A 90 ? ARG A 137 . ? 6_566 ? 10 AC1 15 TRP A 91 ? TRP A 138 . ? 6_566 ? 11 AC1 15 LYS A 119 ? LYS A 166 . ? 4_565 ? 12 AC1 15 LYS A 144 ? LYS A 191 . ? 4_565 ? 13 AC1 15 ALA A 148 ? ALA A 195 . ? 4_565 ? 14 AC1 15 HOH D . ? HOH A 301 . ? 4_565 ? 15 AC1 15 HOH D . ? HOH A 312 . ? 4_565 ? 16 AC1 15 HOH D . ? HOH A 318 . ? 4_565 ? 17 AC1 15 HOH D . ? HOH A 333 . ? 4_565 ? 18 AC1 15 HOH D . ? HOH A 334 . ? 1_555 ? 19 AC2 2 VAL A 43 ? VAL A 90 . ? 1_555 ? 20 AC2 2 HOH D . ? HOH A 374 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ASW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ASW _atom_sites.fract_transf_matrix[1][1] 0.015291 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015291 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012436 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'CIS PROLINE - PRO 73' # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 48 ? ? ? A . n A 1 2 LEU 2 49 ? ? ? A . n A 1 3 ARG 3 50 50 ARG ARG A . n A 1 4 GLU 4 51 51 GLU GLU A . n A 1 5 PRO 5 52 52 PRO PRO A . n A 1 6 ARG 6 53 53 ARG ARG A . n A 1 7 GLY 7 54 54 GLY GLY A . n A 1 8 LEU 8 55 55 LEU LEU A . n A 1 9 GLY 9 56 56 GLY GLY A . n A 1 10 PRO 10 57 57 PRO PRO A . n A 1 11 LEU 11 58 58 LEU LEU A . n A 1 12 GLN 12 59 59 GLN GLN A . n A 1 13 ILE 13 60 60 ILE ILE A . n A 1 14 TRP 14 61 61 TRP TRP A . n A 1 15 GLN 15 62 62 GLN GLN A . n A 1 16 THR 16 63 63 THR THR A . n A 1 17 ASP 17 64 64 ASP ASP A . n A 1 18 PHE 18 65 65 PHE PHE A . n A 1 19 THR 19 66 66 THR THR A . n A 1 20 LEU 20 67 67 LEU LEU A . n A 1 21 GLU 21 68 68 GLU GLU A . n A 1 22 PRO 22 69 69 PRO PRO A . n A 1 23 ARG 23 70 70 ARG ARG A . n A 1 24 MSE 24 71 71 MSE MSE A . n A 1 25 ALA 25 72 72 ALA ALA A . n A 1 26 PRO 26 73 73 PRO PRO A . n A 1 27 ARG 27 74 74 ARG ARG A . n A 1 28 SER 28 75 75 SER SER A . n A 1 29 TRP 29 76 76 TRP TRP A . n A 1 30 LEU 30 77 77 LEU LEU A . n A 1 31 ALA 31 78 78 ALA ALA A . n A 1 32 VAL 32 79 79 VAL VAL A . n A 1 33 THR 33 80 80 THR THR A . n A 1 34 VAL 34 81 81 VAL VAL A . n A 1 35 ASP 35 82 82 ASP ASP A . n A 1 36 THR 36 83 83 THR THR A . n A 1 37 ALA 37 84 84 ALA ALA A . n A 1 38 SER 38 85 85 SER SER A . n A 1 39 SER 39 86 86 SER SER A . n A 1 40 ALA 40 87 87 ALA ALA A . n A 1 41 ILE 41 88 88 ILE ILE A . n A 1 42 VAL 42 89 89 VAL VAL A . n A 1 43 VAL 43 90 90 VAL VAL A . n A 1 44 THR 44 91 91 THR THR A . n A 1 45 GLN 45 92 92 GLN GLN A . n A 1 46 HIS 46 93 93 HIS HIS A . n A 1 47 GLY 47 94 94 GLY GLY A . n A 1 48 ARG 48 95 95 ARG ARG A . n A 1 49 VAL 49 96 96 VAL VAL A . n A 1 50 THR 50 97 97 THR THR A . n A 1 51 SER 51 98 98 SER SER A . n A 1 52 VAL 52 99 99 VAL VAL A . n A 1 53 ALA 53 100 100 ALA ALA A . n A 1 54 ALA 54 101 101 ALA ALA A . n A 1 55 GLN 55 102 102 GLN GLN A . n A 1 56 HIS 56 103 103 HIS HIS A . n A 1 57 HIS 57 104 104 HIS HIS A . n A 1 58 TRP 58 105 105 TRP TRP A . n A 1 59 ALA 59 106 106 ALA ALA A . n A 1 60 THR 60 107 107 THR THR A . n A 1 61 ALA 61 108 108 ALA ALA A . n A 1 62 ILE 62 109 109 ILE ILE A . n A 1 63 ALA 63 110 110 ALA ALA A . n A 1 64 VAL 64 111 111 VAL VAL A . n A 1 65 LEU 65 112 112 LEU LEU A . n A 1 66 GLY 66 113 113 GLY GLY A . n A 1 67 ARG 67 114 114 ARG ARG A . n A 1 68 PRO 68 115 115 PRO PRO A . n A 1 69 LYS 69 116 116 LYS LYS A . n A 1 70 ALA 70 117 117 ALA ALA A . n A 1 71 ILE 71 118 118 ILE ILE A . n A 1 72 LYS 72 119 119 LYS LYS A . n A 1 73 THR 73 120 120 THR THR A . n A 1 74 ASP 74 121 121 ASP ASP A . n A 1 75 ASN 75 122 122 ASN ASN A . n A 1 76 GLY 76 123 123 GLY GLY A . n A 1 77 SER 77 124 124 SER SER A . n A 1 78 CYS 78 125 125 CYS CYS A . n A 1 79 PHE 79 126 126 PHE PHE A . n A 1 80 THR 80 127 127 THR THR A . n A 1 81 SER 81 128 128 SER SER A . n A 1 82 LYS 82 129 129 LYS LYS A . n A 1 83 SER 83 130 130 SER SER A . n A 1 84 THR 84 131 131 THR THR A . n A 1 85 ARG 85 132 132 ARG ARG A . n A 1 86 GLU 86 133 133 GLU GLU A . n A 1 87 TRP 87 134 134 TRP TRP A . n A 1 88 LEU 88 135 135 LEU LEU A . n A 1 89 ALA 89 136 136 ALA ALA A . n A 1 90 ARG 90 137 137 ARG ARG A . n A 1 91 TRP 91 138 138 TRP TRP A . n A 1 92 GLY 92 139 139 GLY GLY A . n A 1 93 ILE 93 140 140 ILE ILE A . n A 1 94 ALA 94 141 141 ALA ALA A . n A 1 95 HIS 95 142 142 HIS HIS A . n A 1 96 THR 96 143 143 THR THR A . n A 1 97 THR 97 144 144 THR THR A . n A 1 98 GLY 98 145 145 GLY GLY A . n A 1 99 ILE 99 146 146 ILE ILE A . n A 1 100 PRO 100 147 147 PRO PRO A . n A 1 101 GLY 101 148 148 GLY GLY A . n A 1 102 ASN 102 149 149 ASN ASN A . n A 1 103 SER 103 150 150 SER SER A . n A 1 104 GLN 104 151 151 GLN GLN A . n A 1 105 GLY 105 152 152 GLY GLY A . n A 1 106 GLN 106 153 153 GLN GLN A . n A 1 107 ALA 107 154 154 ALA ALA A . n A 1 108 MSE 108 155 155 MSE MSE A . n A 1 109 VAL 109 156 156 VAL VAL A . n A 1 110 GLU 110 157 157 GLU GLU A . n A 1 111 ARG 111 158 158 ARG ARG A . n A 1 112 ALA 112 159 159 ALA ALA A . n A 1 113 ASN 113 160 160 ASN ASN A . n A 1 114 ARG 114 161 161 ARG ARG A . n A 1 115 LEU 115 162 162 LEU LEU A . n A 1 116 LEU 116 163 163 LEU LEU A . n A 1 117 LYS 117 164 164 LYS LYS A . n A 1 118 ASP 118 165 165 ASP ASP A . n A 1 119 LYS 119 166 166 LYS LYS A . n A 1 120 ILE 120 167 167 ILE ILE A . n A 1 121 ARG 121 168 168 ARG ARG A . n A 1 122 VAL 122 169 169 VAL VAL A . n A 1 123 LEU 123 170 170 LEU LEU A . n A 1 124 ALA 124 171 171 ALA ALA A . n A 1 125 GLU 125 172 172 GLU GLU A . n A 1 126 GLY 126 173 173 GLY GLY A . n A 1 127 ASP 127 174 174 ASP ASP A . n A 1 128 GLY 128 175 175 GLY GLY A . n A 1 129 PHE 129 176 176 PHE PHE A . n A 1 130 MSE 130 177 177 MSE MSE A . n A 1 131 LYS 131 178 178 LYS LYS A . n A 1 132 ARG 132 179 179 ARG ARG A . n A 1 133 ILE 133 180 180 ILE ILE A . n A 1 134 PRO 134 181 181 PRO PRO A . n A 1 135 THR 135 182 182 THR THR A . n A 1 136 SER 136 183 183 SER SER A . n A 1 137 LYS 137 184 184 LYS LYS A . n A 1 138 GLN 138 185 185 GLN GLN A . n A 1 139 GLY 139 186 186 GLY GLY A . n A 1 140 GLU 140 187 187 GLU GLU A . n A 1 141 LEU 141 188 188 LEU LEU A . n A 1 142 LEU 142 189 189 LEU LEU A . n A 1 143 ALA 143 190 190 ALA ALA A . n A 1 144 LYS 144 191 191 LYS LYS A . n A 1 145 ALA 145 192 192 ALA ALA A . n A 1 146 MSE 146 193 193 MSE MSE A . n A 1 147 TYR 147 194 194 TYR TYR A . n A 1 148 ALA 148 195 195 ALA ALA A . n A 1 149 LEU 149 196 196 LEU LEU A . n A 1 150 ASN 150 197 197 ASN ASN A . n A 1 151 HIS 151 198 198 HIS HIS A . n A 1 152 PHE 152 199 199 PHE PHE A . n A 1 153 GLU 153 200 200 GLU GLU A . n A 1 154 ARG 154 201 201 ARG ARG A . n A 1 155 GLY 155 202 ? ? ? A . n A 1 156 GLU 156 203 ? ? ? A . n A 1 157 ASN 157 204 ? ? ? A . n A 1 158 THR 158 205 ? ? ? A . n A 1 159 LYS 159 206 ? ? ? A . n A 1 160 THR 160 207 ? ? ? A . n A 1 161 ASN 161 208 ? ? ? A . n A 1 162 LEU 162 209 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE 1 252 252 EPE EPE A . C 3 IPA 1 253 253 IPA IPA A . D 4 HOH 1 301 301 HOH HOH A . D 4 HOH 2 302 302 HOH HOH A . D 4 HOH 3 303 303 HOH HOH A . D 4 HOH 4 304 304 HOH HOH A . D 4 HOH 5 305 305 HOH HOH A . D 4 HOH 6 306 306 HOH HOH A . D 4 HOH 7 307 307 HOH HOH A . D 4 HOH 8 308 308 HOH HOH A . D 4 HOH 9 309 309 HOH HOH A . D 4 HOH 10 310 310 HOH HOH A . D 4 HOH 11 311 311 HOH HOH A . D 4 HOH 12 312 312 HOH HOH A . D 4 HOH 13 313 313 HOH HOH A . D 4 HOH 14 314 314 HOH HOH A . D 4 HOH 15 315 315 HOH HOH A . D 4 HOH 16 316 316 HOH HOH A . D 4 HOH 17 317 317 HOH HOH A . D 4 HOH 18 318 318 HOH HOH A . D 4 HOH 19 319 319 HOH HOH A . D 4 HOH 20 320 320 HOH HOH A . D 4 HOH 21 321 321 HOH HOH A . D 4 HOH 22 322 322 HOH HOH A . D 4 HOH 23 323 323 HOH HOH A . D 4 HOH 24 324 324 HOH HOH A . D 4 HOH 25 325 325 HOH HOH A . D 4 HOH 26 326 326 HOH HOH A . D 4 HOH 27 327 327 HOH HOH A . D 4 HOH 28 328 328 HOH HOH A . D 4 HOH 29 329 329 HOH HOH A . D 4 HOH 30 330 330 HOH HOH A . D 4 HOH 31 331 331 HOH HOH A . D 4 HOH 32 332 332 HOH HOH A . D 4 HOH 33 333 333 HOH HOH A . D 4 HOH 34 334 334 HOH HOH A . D 4 HOH 35 335 335 HOH HOH A . D 4 HOH 36 336 336 HOH HOH A . D 4 HOH 37 337 337 HOH HOH A . D 4 HOH 38 338 338 HOH HOH A . D 4 HOH 39 339 339 HOH HOH A . D 4 HOH 40 340 340 HOH HOH A . D 4 HOH 41 341 341 HOH HOH A . D 4 HOH 42 342 342 HOH HOH A . D 4 HOH 43 343 343 HOH HOH A . D 4 HOH 44 344 344 HOH HOH A . D 4 HOH 45 345 345 HOH HOH A . D 4 HOH 46 346 346 HOH HOH A . D 4 HOH 47 347 347 HOH HOH A . D 4 HOH 48 348 348 HOH HOH A . D 4 HOH 49 349 349 HOH HOH A . D 4 HOH 50 350 350 HOH HOH A . D 4 HOH 51 351 351 HOH HOH A . D 4 HOH 52 352 352 HOH HOH A . D 4 HOH 53 353 353 HOH HOH A . D 4 HOH 54 354 354 HOH HOH A . D 4 HOH 55 355 355 HOH HOH A . D 4 HOH 56 356 356 HOH HOH A . D 4 HOH 57 357 357 HOH HOH A . D 4 HOH 58 358 358 HOH HOH A . D 4 HOH 59 359 359 HOH HOH A . D 4 HOH 60 360 360 HOH HOH A . D 4 HOH 61 361 361 HOH HOH A . D 4 HOH 62 362 362 HOH HOH A . D 4 HOH 63 363 363 HOH HOH A . D 4 HOH 64 364 364 HOH HOH A . D 4 HOH 65 365 365 HOH HOH A . D 4 HOH 66 366 366 HOH HOH A . D 4 HOH 67 367 367 HOH HOH A . D 4 HOH 68 368 368 HOH HOH A . D 4 HOH 69 369 369 HOH HOH A . D 4 HOH 70 370 370 HOH HOH A . D 4 HOH 71 371 371 HOH HOH A . D 4 HOH 72 372 372 HOH HOH A . D 4 HOH 73 373 373 HOH HOH A . D 4 HOH 74 374 374 HOH HOH A . D 4 HOH 75 375 375 HOH HOH A . D 4 HOH 76 376 376 HOH HOH A . D 4 HOH 77 377 377 HOH HOH A . D 4 HOH 78 378 378 HOH HOH A . D 4 HOH 79 379 379 HOH HOH A . D 4 HOH 80 380 380 HOH HOH A . D 4 HOH 81 381 381 HOH HOH A . D 4 HOH 82 382 382 HOH HOH A . D 4 HOH 83 383 383 HOH HOH A . D 4 HOH 84 384 384 HOH HOH A . D 4 HOH 85 385 385 HOH HOH A . D 4 HOH 86 386 386 HOH HOH A . D 4 HOH 87 387 387 HOH HOH A . D 4 HOH 88 388 388 HOH HOH A . D 4 HOH 89 389 389 HOH HOH A . D 4 HOH 90 390 390 HOH HOH A . D 4 HOH 91 391 391 HOH HOH A . D 4 HOH 92 392 392 HOH HOH A . D 4 HOH 93 393 393 HOH HOH A . D 4 HOH 94 394 394 HOH HOH A . D 4 HOH 95 395 395 HOH HOH A . D 4 HOH 96 396 396 HOH HOH A . D 4 HOH 97 397 397 HOH HOH A . D 4 HOH 98 398 398 HOH HOH A . D 4 HOH 99 399 399 HOH HOH A . D 4 HOH 100 400 400 HOH HOH A . D 4 HOH 101 401 401 HOH HOH A . D 4 HOH 102 402 402 HOH HOH A . D 4 HOH 103 403 403 HOH HOH A . D 4 HOH 104 404 404 HOH HOH A . D 4 HOH 105 405 405 HOH HOH A . D 4 HOH 106 406 406 HOH HOH A . D 4 HOH 107 407 407 HOH HOH A . D 4 HOH 108 408 408 HOH HOH A . D 4 HOH 109 409 409 HOH HOH A . D 4 HOH 110 410 410 HOH HOH A . D 4 HOH 111 411 411 HOH HOH A . D 4 HOH 112 412 412 HOH HOH A . D 4 HOH 113 413 413 HOH HOH A . D 4 HOH 114 414 414 HOH HOH A . D 4 HOH 115 415 415 HOH HOH A . D 4 HOH 116 416 416 HOH HOH A . D 4 HOH 117 417 417 HOH HOH A . D 4 HOH 118 418 418 HOH HOH A . D 4 HOH 119 419 419 HOH HOH A . D 4 HOH 120 420 420 HOH HOH A . D 4 HOH 121 421 421 HOH HOH A . D 4 HOH 122 422 422 HOH HOH A . D 4 HOH 123 423 423 HOH HOH A . D 4 HOH 124 424 424 HOH HOH A . D 4 HOH 125 425 425 HOH HOH A . D 4 HOH 126 426 426 HOH HOH A . D 4 HOH 127 427 427 HOH HOH A . D 4 HOH 128 428 428 HOH HOH A . D 4 HOH 129 429 429 HOH HOH A . D 4 HOH 130 430 430 HOH HOH A . D 4 HOH 131 431 431 HOH HOH A . D 4 HOH 132 432 432 HOH HOH A . D 4 HOH 133 433 433 HOH HOH A . D 4 HOH 134 434 434 HOH HOH A . D 4 HOH 135 435 435 HOH HOH A . D 4 HOH 136 436 436 HOH HOH A . D 4 HOH 137 437 437 HOH HOH A . D 4 HOH 138 438 438 HOH HOH A . D 4 HOH 139 439 439 HOH HOH A . D 4 HOH 140 440 440 HOH HOH A . D 4 HOH 141 441 441 HOH HOH A . D 4 HOH 142 442 442 HOH HOH A . D 4 HOH 143 443 443 HOH HOH A . D 4 HOH 144 444 444 HOH HOH A . D 4 HOH 145 445 445 HOH HOH A . D 4 HOH 146 446 446 HOH HOH A . D 4 HOH 147 447 447 HOH HOH A . D 4 HOH 148 448 448 HOH HOH A . D 4 HOH 149 449 449 HOH HOH A . D 4 HOH 150 450 450 HOH HOH A . D 4 HOH 151 451 451 HOH HOH A . D 4 HOH 152 452 452 HOH HOH A . D 4 HOH 153 453 453 HOH HOH A . D 4 HOH 154 454 454 HOH HOH A . D 4 HOH 155 455 455 HOH HOH A . D 4 HOH 156 456 456 HOH HOH A . D 4 HOH 157 457 457 HOH HOH A . D 4 HOH 158 458 458 HOH HOH A . D 4 HOH 159 459 459 HOH HOH A . D 4 HOH 160 460 460 HOH HOH A . D 4 HOH 161 461 461 HOH HOH A . D 4 HOH 162 462 462 HOH HOH A . D 4 HOH 163 463 463 HOH HOH A . D 4 HOH 164 464 464 HOH HOH A . D 4 HOH 165 465 465 HOH HOH A . D 4 HOH 166 466 466 HOH HOH A . D 4 HOH 167 467 467 HOH HOH A . D 4 HOH 168 468 468 HOH HOH A . D 4 HOH 169 469 469 HOH HOH A . D 4 HOH 170 470 470 HOH HOH A . D 4 HOH 171 471 471 HOH HOH A . D 4 HOH 172 472 472 HOH HOH A . D 4 HOH 173 473 473 HOH HOH A . D 4 HOH 174 474 474 HOH HOH A . D 4 HOH 175 475 475 HOH HOH A . D 4 HOH 176 476 476 HOH HOH A . D 4 HOH 177 477 477 HOH HOH A . D 4 HOH 178 478 478 HOH HOH A . D 4 HOH 179 479 479 HOH HOH A . D 4 HOH 180 480 480 HOH HOH A . D 4 HOH 181 481 481 HOH HOH A . D 4 HOH 182 482 482 HOH HOH A . D 4 HOH 183 483 483 HOH HOH A . D 4 HOH 184 484 484 HOH HOH A . D 4 HOH 185 485 485 HOH HOH A . D 4 HOH 186 486 486 HOH HOH A . D 4 HOH 187 487 487 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 24 A MSE 71 ? MET SELENOMETHIONINE 2 A MSE 108 A MSE 155 ? MET SELENOMETHIONINE 3 A MSE 130 A MSE 177 ? MET SELENOMETHIONINE 4 A MSE 146 A MSE 193 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0.0000000000 -1.0000000000 0.0000000000 65.4000000000 -1.0000000000 0.0000000000 0.0000000000 65.4000000000 0.0000000000 0.0000000000 -1.0000000000 120.6150000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-11-14 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PROLSQ refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 1ASW _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ;ORIGINAL VIRAL DNA CLONE: JU ET AL., J. VIROL. 33:1026-1033 (1980) ORIGINAL EXPRESSION CLONE: TERRY ET AL., J. VIROL. 62:2358-2365 (1988) EXPRESSION CLONE FOR CORE: KULKOSKY ET AL., J. VIROL. 206:448-456 (1995) ; _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 353 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 447 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NH1 A ARG 50 ? ? CZ A ARG 50 ? ? NH2 A ARG 50 ? ? 129.97 119.40 10.57 1.10 N 2 1 NE A ARG 50 ? ? CZ A ARG 50 ? ? NH1 A ARG 50 ? ? 109.03 120.30 -11.27 0.50 N 3 1 CD A ARG 53 ? ? NE A ARG 53 ? ? CZ A ARG 53 ? ? 132.12 123.60 8.52 1.40 N 4 1 NE A ARG 70 ? ? CZ A ARG 70 ? ? NH1 A ARG 70 ? ? 116.23 120.30 -4.07 0.50 N 5 1 NE A ARG 70 ? ? CZ A ARG 70 ? ? NH2 A ARG 70 ? ? 126.27 120.30 5.97 0.50 N 6 1 NH1 A ARG 74 ? ? CZ A ARG 74 ? ? NH2 A ARG 74 ? ? 108.84 119.40 -10.56 1.10 N 7 1 NE A ARG 74 ? ? CZ A ARG 74 ? ? NH1 A ARG 74 ? ? 140.05 120.30 19.75 0.50 N 8 1 NE A ARG 74 ? ? CZ A ARG 74 ? ? NH2 A ARG 74 ? ? 110.98 120.30 -9.32 0.50 N 9 1 CG1 A VAL 81 ? ? CB A VAL 81 ? ? CG2 A VAL 81 ? ? 101.17 110.90 -9.73 1.60 N 10 1 CB A ASP 82 ? ? CG A ASP 82 ? ? OD1 A ASP 82 ? ? 124.51 118.30 6.21 0.90 N 11 1 N A SER 85 ? ? CA A SER 85 ? ? CB A SER 85 ? ? 101.08 110.50 -9.42 1.50 N 12 1 NE A ARG 95 ? ? CZ A ARG 95 ? ? NH1 A ARG 95 ? ? 117.09 120.30 -3.21 0.50 N 13 1 CB A ASP 121 ? ? CG A ASP 121 ? ? OD2 A ASP 121 ? ? 111.00 118.30 -7.30 0.90 N 14 1 NE A ARG 132 ? ? CZ A ARG 132 ? ? NH2 A ARG 132 ? ? 123.37 120.30 3.07 0.50 N 15 1 NE A ARG 137 ? ? CZ A ARG 137 ? ? NH1 A ARG 137 ? ? 128.96 120.30 8.66 0.50 N 16 1 NE A ARG 137 ? ? CZ A ARG 137 ? ? NH2 A ARG 137 ? ? 115.33 120.30 -4.97 0.50 N 17 1 N A GLY 148 ? ? CA A GLY 148 ? ? C A GLY 148 ? ? 93.38 113.10 -19.72 2.50 N 18 1 OE1 A GLU 157 ? ? CD A GLU 157 ? ? OE2 A GLU 157 ? ? 131.45 123.30 8.15 1.20 N 19 1 NE A ARG 168 ? ? CZ A ARG 168 ? ? NH2 A ARG 168 ? ? 125.20 120.30 4.90 0.50 N 20 1 NE A ARG 179 ? ? CZ A ARG 179 ? ? NH1 A ARG 179 ? ? 131.29 120.30 10.99 0.50 N 21 1 NE A ARG 179 ? ? CZ A ARG 179 ? ? NH2 A ARG 179 ? ? 112.64 120.30 -7.66 0.50 N 22 1 NH1 A ARG 201 ? ? CZ A ARG 201 ? ? NH2 A ARG 201 ? ? 126.97 119.40 7.57 1.10 N 23 1 NE A ARG 201 ? ? CZ A ARG 201 ? ? NH1 A ARG 201 ? ? 115.36 120.30 -4.94 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 53 ? ? 77.59 91.47 2 1 SER A 150 ? ? 98.29 -54.33 3 1 GLN A 151 ? ? 152.91 123.33 4 1 LYS A 178 ? ? -134.52 -118.77 5 1 GLU A 200 ? ? -65.87 60.32 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 48 ? A PRO 1 2 1 Y 1 A LEU 49 ? A LEU 2 3 1 Y 1 A GLY 202 ? A GLY 155 4 1 Y 1 A GLU 203 ? A GLU 156 5 1 Y 1 A ASN 204 ? A ASN 157 6 1 Y 1 A THR 205 ? A THR 158 7 1 Y 1 A LYS 206 ? A LYS 159 8 1 Y 1 A THR 207 ? A THR 160 9 1 Y 1 A ASN 208 ? A ASN 161 10 1 Y 1 A LEU 209 ? A LEU 162 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' EPE 3 'ISOPROPYL ALCOHOL' IPA 4 water HOH #