HEADER THIOL PROTEASE 26-AUG-97 1AUG TITLE CRYSTAL STRUCTURE OF THE PYROGLUTAMYL PEPTIDASE I FROM BACILLUS TITLE 2 AMYLOLIQUEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYROGLUTAMYL PEPTIDASE-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PGP-1, PYRROLIDONE-CARBOXYLATE PEPTIDASE; COMPND 5 EC: 3.4.19.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS AMYLOLIQUEFACIENS; SOURCE 3 ORGANISM_TAXID: 1390; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PBPG 1 KEYWDS PYROGLUTAMYL PEPTIDASE, CYSTEINE PROTEINASE, BACILLUS KEYWDS 2 AMYLOLIQUEFACIENS, HYDROLASE, THIOL PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ODAGAKI,A.HAYASHI,K.OKADA,K.HIROTSU,T.KABASHIMA,K.ITO,T.YOSHIMOTO, AUTHOR 2 D.TSURU,M.SATO,J.CLARDY REVDAT 3 07-FEB-24 1AUG 1 REMARK REVDAT 2 24-FEB-09 1AUG 1 VERSN REVDAT 1 23-MAR-99 1AUG 0 JRNL AUTH Y.ODAGAKI,A.HAYASHI,K.OKADA,K.HIROTSU,T.KABASHIMA,K.ITO, JRNL AUTH 2 T.YOSHIMOTO,D.TSURU,M.SATO,J.CLARDY JRNL TITL THE CRYSTAL STRUCTURE OF PYROGLUTAMYL PEPTIDASE I FROM JRNL TITL 2 BACILLUS AMYLOLIQUEFACIENS REVEALS A NEW STRUCTURE FOR A JRNL TITL 3 CYSTEINE PROTEASE. JRNL REF STRUCTURE FOLD.DES. V. 7 399 1999 JRNL REFN ISSN 0969-2126 JRNL PMID 10196127 JRNL DOI 10.1016/S0969-2126(99)80053-7 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 47608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3825 REMARK 3 BIN R VALUE (WORKING SET) : 0.2685 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 2.983 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.63 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.796 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : PARAM11.WAT REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH11.WAT REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : FEB-96 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : XUONG-HAMLIN MULTIWIRE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50037 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 76.8 REMARK 200 DATA REDUNDANCY : 2.430 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 15.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.13 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.40000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 211 REMARK 465 GLY A 212 REMARK 465 GLU A 213 REMARK 465 LEU A 214 REMARK 465 HIS A 215 REMARK 465 GLY B 421 REMARK 465 GLY B 422 REMARK 465 GLU B 423 REMARK 465 LEU B 424 REMARK 465 HIS B 425 REMARK 465 GLY C 631 REMARK 465 GLY C 632 REMARK 465 GLU C 633 REMARK 465 LEU C 634 REMARK 465 HIS C 635 REMARK 465 GLY D 841 REMARK 465 GLY D 842 REMARK 465 GLU D 843 REMARK 465 LEU D 844 REMARK 465 HIS D 845 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 204 CD OE1 OE2 REMARK 470 GLU A 208 CB CG CD OE1 OE2 REMARK 470 GLU B 414 CD OE1 OE2 REMARK 470 GLU B 418 CB CG CD OE1 OE2 REMARK 470 GLU C 624 CD OE1 OE2 REMARK 470 GLU C 628 CB CG CD OE1 OE2 REMARK 470 GLU D 834 CD OE1 OE2 REMARK 470 GLU D 838 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 158 NE2 HIS A 158 CD2 -0.074 REMARK 500 HIS A 188 NE2 HIS A 188 CD2 -0.079 REMARK 500 HIS B 271 NE2 HIS B 271 CD2 -0.075 REMARK 500 HIS B 368 NE2 HIS B 368 CD2 -0.083 REMARK 500 HIS B 378 NE2 HIS B 378 CD2 -0.069 REMARK 500 HIS B 398 NE2 HIS B 398 CD2 -0.073 REMARK 500 HIS C 566 NE2 HIS C 566 CD2 -0.068 REMARK 500 HIS C 578 NE2 HIS C 578 CD2 -0.069 REMARK 500 HIS C 579 NE2 HIS C 579 CD2 -0.080 REMARK 500 HIS C 581 NE2 HIS C 581 CD2 -0.067 REMARK 500 HIS C 588 NE2 HIS C 588 CD2 -0.084 REMARK 500 HIS C 623 NE2 HIS C 623 CD2 -0.078 REMARK 500 HIS D 691 NE2 HIS D 691 CD2 -0.070 REMARK 500 HIS D 788 NE2 HIS D 788 CD2 -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 6 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 TRP A 22 CD1 - CG - CD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 TRP A 22 CE2 - CD2 - CG ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 27 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG A 75 CB - CG - CD ANGL. DEV. = 18.5 DEGREES REMARK 500 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 VAL A 83 CB - CA - C ANGL. DEV. = -11.6 DEGREES REMARK 500 TRP A 114 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP A 114 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP A 114 CG - CD2 - CE3 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 163 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 THR A 209 CA - C - N ANGL. DEV. = 12.5 DEGREES REMARK 500 TRP B 232 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP B 232 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 285 NE - CZ - NH1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG B 285 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG B 292 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 VAL B 293 CB - CA - C ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG B 301 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TRP B 324 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP B 324 CE2 - CD2 - CG ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG B 373 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 THR B 419 CA - C - N ANGL. DEV. = 12.8 DEGREES REMARK 500 TRP C 442 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP C 442 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG C 495 NE - CZ - NH1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG C 495 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG C 502 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG C 511 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR C 533 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TRP C 534 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP C 534 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG C 541 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG C 583 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASN D 649 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 TRP D 652 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP D 652 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG D 685 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG D 705 CB - CG - CD ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG D 705 NE - CZ - NH1 ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG D 705 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG D 712 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG D 721 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 TRP D 744 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP D 744 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG D 751 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG D 793 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG D 793 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 51 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 48 -53.63 80.42 REMARK 500 PHE A 142 -155.16 -99.51 REMARK 500 THR A 209 -71.22 -114.91 REMARK 500 TYR B 258 -52.09 71.90 REMARK 500 ASP B 304 -169.46 -77.18 REMARK 500 PHE B 352 -156.80 -98.04 REMARK 500 GLU C 436 154.89 -47.20 REMARK 500 TYR C 468 -54.63 74.07 REMARK 500 PHE C 562 -156.44 -97.09 REMARK 500 GLU C 628 69.69 -103.93 REMARK 500 TYR D 678 -52.47 79.21 REMARK 500 PHE D 772 -157.76 -99.11 REMARK 500 HIS D 789 58.71 -141.78 REMARK 500 THR D 839 -79.54 -147.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 1AUG A 1 215 UNP P46107 PCP_BACAM 1 215 DBREF 1AUG B 211 425 UNP P46107 PCP_BACAM 1 215 DBREF 1AUG C 421 635 UNP P46107 PCP_BACAM 1 215 DBREF 1AUG D 631 845 UNP P46107 PCP_BACAM 1 215 SEQRES 1 A 215 MET GLU LYS LYS VAL LEU LEU THR GLY PHE ASP PRO PHE SEQRES 2 A 215 GLY GLY GLU THR VAL ASN PRO SER TRP GLU ALA VAL LYS SEQRES 3 A 215 ARG LEU ASN GLY ALA ALA GLU GLY PRO ALA SER ILE VAL SEQRES 4 A 215 SER GLU GLN VAL PRO THR VAL PHE TYR LYS SER LEU ALA SEQRES 5 A 215 VAL LEU ARG GLU ALA ILE LYS LYS HIS GLN PRO ASP ILE SEQRES 6 A 215 ILE ILE CYS VAL GLY GLN ALA GLY GLY ARG MET GLN ILE SEQRES 7 A 215 THR PRO GLU ARG VAL ALA ILE ASN LEU ASN GLU ALA ARG SEQRES 8 A 215 ILE PRO ASP ASN GLU GLY ASN GLN PRO VAL GLY GLU ASP SEQRES 9 A 215 ILE SER GLN GLY GLY PRO ALA ALA TYR TRP THR GLY LEU SEQRES 10 A 215 PRO ILE LYS ARG ILE VAL GLU GLU ILE LYS LYS GLU GLY SEQRES 11 A 215 ILE PRO ALA ALA VAL SER TYR THR ALA GLY THR PHE VAL SEQRES 12 A 215 CYS ASN HIS LEU PHE TYR GLY LEU MET ASP GLU ILE SER SEQRES 13 A 215 ARG HIS HIS PRO HIS ILE ARG GLY GLY PHE ILE HIS ILE SEQRES 14 A 215 PRO TYR ILE PRO GLU GLN THR LEU GLN LYS SER ALA PRO SEQRES 15 A 215 SER LEU SER LEU ASP HIS ILE THR LYS ALA LEU LYS ILE SEQRES 16 A 215 ALA ALA VAL THR ALA ALA VAL HIS GLU ASP ASP ILE GLU SEQRES 17 A 215 THR GLY GLY GLY GLU LEU HIS SEQRES 1 B 215 MET GLU LYS LYS VAL LEU LEU THR GLY PHE ASP PRO PHE SEQRES 2 B 215 GLY GLY GLU THR VAL ASN PRO SER TRP GLU ALA VAL LYS SEQRES 3 B 215 ARG LEU ASN GLY ALA ALA GLU GLY PRO ALA SER ILE VAL SEQRES 4 B 215 SER GLU GLN VAL PRO THR VAL PHE TYR LYS SER LEU ALA SEQRES 5 B 215 VAL LEU ARG GLU ALA ILE LYS LYS HIS GLN PRO ASP ILE SEQRES 6 B 215 ILE ILE CYS VAL GLY GLN ALA GLY GLY ARG MET GLN ILE SEQRES 7 B 215 THR PRO GLU ARG VAL ALA ILE ASN LEU ASN GLU ALA ARG SEQRES 8 B 215 ILE PRO ASP ASN GLU GLY ASN GLN PRO VAL GLY GLU ASP SEQRES 9 B 215 ILE SER GLN GLY GLY PRO ALA ALA TYR TRP THR GLY LEU SEQRES 10 B 215 PRO ILE LYS ARG ILE VAL GLU GLU ILE LYS LYS GLU GLY SEQRES 11 B 215 ILE PRO ALA ALA VAL SER TYR THR ALA GLY THR PHE VAL SEQRES 12 B 215 CYS ASN HIS LEU PHE TYR GLY LEU MET ASP GLU ILE SER SEQRES 13 B 215 ARG HIS HIS PRO HIS ILE ARG GLY GLY PHE ILE HIS ILE SEQRES 14 B 215 PRO TYR ILE PRO GLU GLN THR LEU GLN LYS SER ALA PRO SEQRES 15 B 215 SER LEU SER LEU ASP HIS ILE THR LYS ALA LEU LYS ILE SEQRES 16 B 215 ALA ALA VAL THR ALA ALA VAL HIS GLU ASP ASP ILE GLU SEQRES 17 B 215 THR GLY GLY GLY GLU LEU HIS SEQRES 1 C 215 MET GLU LYS LYS VAL LEU LEU THR GLY PHE ASP PRO PHE SEQRES 2 C 215 GLY GLY GLU THR VAL ASN PRO SER TRP GLU ALA VAL LYS SEQRES 3 C 215 ARG LEU ASN GLY ALA ALA GLU GLY PRO ALA SER ILE VAL SEQRES 4 C 215 SER GLU GLN VAL PRO THR VAL PHE TYR LYS SER LEU ALA SEQRES 5 C 215 VAL LEU ARG GLU ALA ILE LYS LYS HIS GLN PRO ASP ILE SEQRES 6 C 215 ILE ILE CYS VAL GLY GLN ALA GLY GLY ARG MET GLN ILE SEQRES 7 C 215 THR PRO GLU ARG VAL ALA ILE ASN LEU ASN GLU ALA ARG SEQRES 8 C 215 ILE PRO ASP ASN GLU GLY ASN GLN PRO VAL GLY GLU ASP SEQRES 9 C 215 ILE SER GLN GLY GLY PRO ALA ALA TYR TRP THR GLY LEU SEQRES 10 C 215 PRO ILE LYS ARG ILE VAL GLU GLU ILE LYS LYS GLU GLY SEQRES 11 C 215 ILE PRO ALA ALA VAL SER TYR THR ALA GLY THR PHE VAL SEQRES 12 C 215 CYS ASN HIS LEU PHE TYR GLY LEU MET ASP GLU ILE SER SEQRES 13 C 215 ARG HIS HIS PRO HIS ILE ARG GLY GLY PHE ILE HIS ILE SEQRES 14 C 215 PRO TYR ILE PRO GLU GLN THR LEU GLN LYS SER ALA PRO SEQRES 15 C 215 SER LEU SER LEU ASP HIS ILE THR LYS ALA LEU LYS ILE SEQRES 16 C 215 ALA ALA VAL THR ALA ALA VAL HIS GLU ASP ASP ILE GLU SEQRES 17 C 215 THR GLY GLY GLY GLU LEU HIS SEQRES 1 D 215 MET GLU LYS LYS VAL LEU LEU THR GLY PHE ASP PRO PHE SEQRES 2 D 215 GLY GLY GLU THR VAL ASN PRO SER TRP GLU ALA VAL LYS SEQRES 3 D 215 ARG LEU ASN GLY ALA ALA GLU GLY PRO ALA SER ILE VAL SEQRES 4 D 215 SER GLU GLN VAL PRO THR VAL PHE TYR LYS SER LEU ALA SEQRES 5 D 215 VAL LEU ARG GLU ALA ILE LYS LYS HIS GLN PRO ASP ILE SEQRES 6 D 215 ILE ILE CYS VAL GLY GLN ALA GLY GLY ARG MET GLN ILE SEQRES 7 D 215 THR PRO GLU ARG VAL ALA ILE ASN LEU ASN GLU ALA ARG SEQRES 8 D 215 ILE PRO ASP ASN GLU GLY ASN GLN PRO VAL GLY GLU ASP SEQRES 9 D 215 ILE SER GLN GLY GLY PRO ALA ALA TYR TRP THR GLY LEU SEQRES 10 D 215 PRO ILE LYS ARG ILE VAL GLU GLU ILE LYS LYS GLU GLY SEQRES 11 D 215 ILE PRO ALA ALA VAL SER TYR THR ALA GLY THR PHE VAL SEQRES 12 D 215 CYS ASN HIS LEU PHE TYR GLY LEU MET ASP GLU ILE SER SEQRES 13 D 215 ARG HIS HIS PRO HIS ILE ARG GLY GLY PHE ILE HIS ILE SEQRES 14 D 215 PRO TYR ILE PRO GLU GLN THR LEU GLN LYS SER ALA PRO SEQRES 15 D 215 SER LEU SER LEU ASP HIS ILE THR LYS ALA LEU LYS ILE SEQRES 16 D 215 ALA ALA VAL THR ALA ALA VAL HIS GLU ASP ASP ILE GLU SEQRES 17 D 215 THR GLY GLY GLY GLU LEU HIS FORMUL 5 HOH *315(H2 O) HELIX 1 1 PRO A 20 LEU A 28 1 9 HELIX 2 2 LYS A 49 HIS A 61 1 13 HELIX 3 3 ILE A 119 GLU A 129 1 11 HELIX 4 4 VAL A 143 HIS A 158 1 16 HELIX 5 5 PRO A 173 GLN A 175 5 3 HELIX 6 6 LEU A 186 VAL A 202 1 17 HELIX 7 7 PRO B 230 LEU B 238 1 9 HELIX 8 8 LYS B 259 HIS B 271 1 13 HELIX 9 9 ILE B 329 GLU B 339 1 11 HELIX 10 10 VAL B 353 HIS B 368 1 16 HELIX 11 11 PRO B 383 GLN B 385 5 3 HELIX 12 12 LEU B 396 VAL B 412 1 17 HELIX 13 13 PRO C 440 LEU C 448 1 9 HELIX 14 14 LYS C 469 HIS C 481 1 13 HELIX 15 15 ILE C 539 GLU C 549 1 11 HELIX 16 16 VAL C 563 HIS C 578 1 16 HELIX 17 17 PRO C 593 GLN C 595 5 3 HELIX 18 18 LEU C 606 VAL C 622 1 17 HELIX 19 19 PRO D 650 LEU D 658 1 9 HELIX 20 20 LYS D 679 HIS D 691 1 13 HELIX 21 21 ILE D 749 GLU D 759 1 11 HELIX 22 22 VAL D 773 HIS D 788 1 16 HELIX 23 23 PRO D 803 GLN D 805 5 3 HELIX 24 24 LEU D 816 VAL D 832 1 17 SHEET 1 A 4 ALA A 36 VAL A 43 0 SHEET 2 A 4 LYS A 3 PHE A 10 1 N LYS A 3 O SER A 37 SHEET 3 A 4 ILE A 65 GLN A 71 1 N ILE A 65 O LEU A 6 SHEET 4 A 4 ARG A 163 ILE A 169 1 N ARG A 163 O ILE A 66 SHEET 1 B 2 VAL A 83 ILE A 85 0 SHEET 2 B 2 ALA A 112 TRP A 114 -1 N TYR A 113 O ALA A 84 SHEET 1 C 4 ALA B 246 VAL B 253 0 SHEET 2 C 4 LYS B 213 PHE B 220 1 N LYS B 213 O SER B 247 SHEET 3 C 4 ILE B 275 GLN B 281 1 N ILE B 275 O LEU B 216 SHEET 4 C 4 ARG B 373 ILE B 379 1 N ARG B 373 O ILE B 276 SHEET 1 D 2 VAL B 293 ILE B 295 0 SHEET 2 D 2 ALA B 322 TRP B 324 -1 N TYR B 323 O ALA B 294 SHEET 1 E 4 ALA C 456 VAL C 463 0 SHEET 2 E 4 LYS C 423 PHE C 430 1 N LYS C 423 O SER C 457 SHEET 3 E 4 ILE C 485 GLN C 491 1 N ILE C 485 O LEU C 426 SHEET 4 E 4 ARG C 583 ILE C 589 1 N ARG C 583 O ILE C 486 SHEET 1 F 2 VAL C 503 ILE C 505 0 SHEET 2 F 2 ALA C 532 TRP C 534 -1 N TYR C 533 O ALA C 504 SHEET 1 G 4 ALA D 666 VAL D 673 0 SHEET 2 G 4 LYS D 633 PHE D 640 1 N LYS D 633 O SER D 667 SHEET 3 G 4 ILE D 695 GLN D 701 1 N ILE D 695 O LEU D 636 SHEET 4 G 4 ARG D 793 ILE D 799 1 N ARG D 793 O ILE D 696 SHEET 1 H 2 VAL D 713 ILE D 715 0 SHEET 2 H 2 ALA D 742 TRP D 744 -1 N TYR D 743 O ALA D 714 CRYST1 78.712 80.800 69.157 90.00 92.75 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012705 0.000000 0.000610 0.00000 SCALE2 0.000000 0.012376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014477 0.00000 MTRIX1 1 -0.999905 -0.000795 -0.013773 23.23730 1 MTRIX2 1 -0.005939 0.925903 0.377714 -6.82520 1 MTRIX3 1 0.012452 0.377760 -0.925820 34.95130 1 MTRIX1 2 -0.980350 0.012243 -0.196886 26.71520 1 MTRIX2 2 0.061689 -0.928988 -0.364933 22.14550 1 MTRIX3 2 -0.187373 -0.369908 0.909978 6.96550 1 MTRIX1 3 0.983608 -0.059622 0.170179 -2.76270 1 MTRIX2 3 -0.057937 -0.998210 -0.014853 17.27590 1 MTRIX3 3 0.170760 0.004750 -0.985301 37.42620 1