data_1AUL # _entry.id 1AUL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AUL pdb_00001aul 10.2210/pdb1aul/pdb WWPDB D_1000171277 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-12-24 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_database_status.process_site' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AUL _pdbx_database_status.recvd_initial_deposition_date 1997-08-29 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kumar, S.' 1 'Reed, M.W.' 2 'Gamper Junior, H.B.' 3 'Gorn, V.V.' 4 'Lukhtanov, E.A.' 5 'Foti, M.' 6 'West, J.' 7 'Meyer Junior, R.B.' 8 'Schweitzer, B.I.' 9 # _citation.id primary _citation.title 'Solution structure of a highly stable DNA duplex conjugated to a minor groove binder.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 26 _citation.page_first 831 _citation.page_last 838 _citation.year 1998 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9443977 _citation.pdbx_database_id_DOI 10.1093/nar/26.3.831 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kumar, S.' 1 ? primary 'Reed, M.W.' 2 ? primary 'Gamper Jr., H.B.' 3 ? primary 'Gorn, V.V.' 4 ? primary 'Lukhtanov, E.A.' 5 ? primary 'Foti, M.' 6 ? primary 'West, J.' 7 ? primary 'Meyer Jr., R.B.' 8 ? primary 'Schweitzer, B.I.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*THXP*GP*AP*TP*TP*AP*TP*CP*TP*G)-3') ; 3744.794 1 ? ? ? 'TRIPEPTIDE CDPI3 IS COVALENTLY LINKED TO THE T1 DNA RESIDUE WITH A HEXAMETHYLENE LINKER' 2 polymer syn ;DNA (5'-D(*CP*AP*GP*AP*TP*AP*AP*TP*CP*A)-3') ; 3037.032 1 ? ? ? 'TRIPEPTIDE CDPI3 IS COVALENTLY LINKED TO THE T1 DNA RESIDUE WITH A HEXAMETHYLENE LINKER' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(THX)(DG)(DA)(DT)(DT)(DA)(DT)(DC)(DT)(DG)' NGATTATCTG A ? 2 polydeoxyribonucleotide no no '(DC)(DA)(DG)(DA)(DT)(DA)(DA)(DT)(DC)(DA)' CAGATAATCA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THX n 1 2 DG n 1 3 DA n 1 4 DT n 1 5 DT n 1 6 DA n 1 7 DT n 1 8 DC n 1 9 DT n 1 10 DG n 2 1 DC n 2 2 DA n 2 3 DG n 2 4 DA n 2 5 DT n 2 6 DA n 2 7 DA n 2 8 DT n 2 9 DC n 2 10 DA n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? ;CDPI3 COVALENTLY LINKED TO 5' END OF DNA STRAND A WITH A HEXAMETHYLENE LINKER ; 2 1 sample ? ? ? ? ? ;CDPI3 COVALENTLY LINKED TO 5' END OF DNA STRAND A WITH A HEXAMETHYLENE LINKER ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 THX 'DNA linking' . ;PHOSPHONIC ACID 6-({6-[6-(6-CARBAMOYL-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBONYL)-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDOCENE-2-CA RBONYL]-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBONL}-AMINO)-HEXYL ESTER 5-(5-METHYL-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-TETRAHYDRO-FURAN-2-YLMETHYL ESTER ; CDPI3 'C50 H53 N10 O12 P' 1016.989 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THX 1 1 1 THX THX A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DG 10 10 10 DG G A . n B 2 1 DC 1 11 11 DC C B . n B 2 2 DA 2 12 12 DA A B . n B 2 3 DG 3 13 13 DG G B . n B 2 4 DA 4 14 14 DA A B . n B 2 5 DT 5 15 15 DT T B . n B 2 6 DA 6 16 16 DA A B . n B 2 7 DA 7 17 17 DA A B . n B 2 8 DT 8 18 18 DT T B . n B 2 9 DC 9 19 19 DC C B . n B 2 10 DA 10 20 20 DA A B . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # _cell.entry_id 1AUL _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AUL _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1AUL _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1AUL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1AUL _struct.title 'SOLUTION STRUCTURE OF A HIGHLY STABLE DNA DUPLEX CONJUGATED TO A MINOR GROOVE BINDER, NMR, MINIMIZED AVERAGE STRUCTURE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AUL _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DEOXYRIBONUCLEIC ACID, CDPI3, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1AUL 1AUL ? ? ? 2 2 PDB 1AUL 1AUL ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AUL A 1 ? 10 ? 1AUL 1 ? 10 ? 1 10 2 2 1AUL B 1 ? 10 ? 1AUL 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A THX 1 "O3'" ? ? ? 1_555 A DG 2 P ? ? A THX 1 A DG 2 1_555 ? ? ? ? ? ? ? 1.734 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog2 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 4 B DA 16 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog5 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 7 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 7 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 9 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 9 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O4 A THX 1 ? ? H61 B DA 20 ? ? 1.39 2 1 H3 A THX 1 ? ? N1 B DA 20 ? ? 1.57 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A THX 1 ? ? P A DG 2 ? ? 1.734 1.607 0.127 0.012 Y 2 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.742 1.593 0.149 0.010 N 3 1 "O3'" A DG 2 ? ? P A DA 3 ? ? 1.730 1.607 0.123 0.012 Y 4 1 P A DA 3 ? ? "O5'" A DA 3 ? ? 1.726 1.593 0.133 0.010 N 5 1 N9 A DA 3 ? ? C4 A DA 3 ? ? 1.332 1.374 -0.042 0.006 N 6 1 "O3'" A DA 3 ? ? P A DT 4 ? ? 1.731 1.607 0.124 0.012 Y 7 1 P A DT 4 ? ? "O5'" A DT 4 ? ? 1.733 1.593 0.140 0.010 N 8 1 "O3'" A DT 4 ? ? P A DT 5 ? ? 1.725 1.607 0.118 0.012 Y 9 1 P A DT 5 ? ? "O5'" A DT 5 ? ? 1.716 1.593 0.123 0.010 N 10 1 "O3'" A DT 5 ? ? P A DA 6 ? ? 1.722 1.607 0.115 0.012 Y 11 1 P A DA 6 ? ? "O5'" A DA 6 ? ? 1.727 1.593 0.134 0.010 N 12 1 "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? 1.652 1.518 0.134 0.012 N 13 1 "O3'" A DA 6 ? ? P A DT 7 ? ? 1.729 1.607 0.122 0.012 Y 14 1 P A DT 7 ? ? "O5'" A DT 7 ? ? 1.730 1.593 0.137 0.010 N 15 1 "O3'" A DT 7 ? ? P A DC 8 ? ? 1.734 1.607 0.127 0.012 Y 16 1 P A DC 8 ? ? "O5'" A DC 8 ? ? 1.733 1.593 0.140 0.010 N 17 1 "O3'" A DC 8 ? ? P A DT 9 ? ? 1.730 1.607 0.123 0.012 Y 18 1 P A DT 9 ? ? "O5'" A DT 9 ? ? 1.726 1.593 0.133 0.010 N 19 1 "C2'" A DT 9 ? ? "C1'" A DT 9 ? ? 1.589 1.519 0.070 0.010 N 20 1 "O3'" A DT 9 ? ? P A DG 10 ? ? 1.732 1.607 0.125 0.012 Y 21 1 P A DG 10 ? ? "O5'" A DG 10 ? ? 1.732 1.593 0.139 0.010 N 22 1 "C2'" B DC 11 ? ? "C1'" B DC 11 ? ? 1.584 1.519 0.065 0.010 N 23 1 "O3'" B DC 11 ? ? P B DA 12 ? ? 1.737 1.607 0.130 0.012 Y 24 1 P B DA 12 ? ? "O5'" B DA 12 ? ? 1.733 1.593 0.140 0.010 N 25 1 "O3'" B DA 12 ? ? P B DG 13 ? ? 1.726 1.607 0.119 0.012 Y 26 1 P B DG 13 ? ? "O5'" B DG 13 ? ? 1.727 1.593 0.134 0.010 N 27 1 "O3'" B DG 13 ? ? P B DA 14 ? ? 1.728 1.607 0.121 0.012 Y 28 1 P B DA 14 ? ? "O5'" B DA 14 ? ? 1.726 1.593 0.133 0.010 N 29 1 "O3'" B DA 14 ? ? P B DT 15 ? ? 1.731 1.607 0.124 0.012 Y 30 1 P B DT 15 ? ? "O5'" B DT 15 ? ? 1.736 1.593 0.143 0.010 N 31 1 "O3'" B DT 15 ? ? P B DA 16 ? ? 1.728 1.607 0.121 0.012 Y 32 1 P B DA 16 ? ? "O5'" B DA 16 ? ? 1.730 1.593 0.137 0.010 N 33 1 "C2'" B DA 16 ? ? "C1'" B DA 16 ? ? 1.581 1.519 0.062 0.010 N 34 1 "O3'" B DA 16 ? ? P B DA 17 ? ? 1.723 1.607 0.116 0.012 Y 35 1 P B DA 17 ? ? "O5'" B DA 17 ? ? 1.718 1.593 0.125 0.010 N 36 1 "O3'" B DA 17 ? ? P B DT 18 ? ? 1.724 1.607 0.117 0.012 Y 37 1 P B DT 18 ? ? "O5'" B DT 18 ? ? 1.744 1.593 0.151 0.010 N 38 1 "O3'" B DT 18 ? ? P B DC 19 ? ? 1.752 1.607 0.145 0.012 Y 39 1 P B DC 19 ? ? "O5'" B DC 19 ? ? 1.738 1.593 0.145 0.010 N 40 1 "C2'" B DC 19 ? ? "C1'" B DC 19 ? ? 1.601 1.519 0.082 0.010 N 41 1 "O3'" B DC 19 ? ? P B DA 20 ? ? 1.736 1.607 0.129 0.012 Y 42 1 P B DA 20 ? ? "O5'" B DA 20 ? ? 1.726 1.593 0.133 0.010 N 43 1 "C3'" B DA 20 ? ? "C2'" B DA 20 ? ? 1.593 1.518 0.075 0.012 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 124.88 128.60 -3.72 0.60 N 2 1 C5 B DG 13 ? ? C6 B DG 13 ? ? O6 B DG 13 ? ? 124.88 128.60 -3.72 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC B 19 ? ? 0.072 'SIDE CHAIN' 2 1 DA B 20 ? ? 0.059 'SIDE CHAIN' # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 B _pdbx_validate_polymer_linkage.auth_comp_id_1 DT _pdbx_validate_polymer_linkage.auth_seq_id_1 18 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 B _pdbx_validate_polymer_linkage.auth_comp_id_2 DC _pdbx_validate_polymer_linkage.auth_seq_id_2 19 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.75 # _pdbx_nmr_ensemble.entry_id 1AUL _pdbx_nmr_ensemble.conformers_calculated_total_number 6 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATION' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293.15 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 DQF-COSY 1 3 1 HETEROTOCSY 1 4 1 TOCSY 1 # _pdbx_nmr_refine.entry_id 1AUL _pdbx_nmr_refine.method 'RESTRAINED MOLECULAR DYNAMICS/RELAXATION MATRIX REFINEMENT' _pdbx_nmr_refine.details ;CANONICAL B-TYPE STRUCTURE USED IN RESTRAINED MOLECULAR DYNAMICS CALCULATIONS GENERATING SIX STRUCTURES FROM DIFFERENT RANDOM NUMBER SEEDS. THE SIX STRUCTURES WERE SUBJECTED TO RELAXATION MATRIX REFINEMENT TO GENERATE THE SIX FINAL STRUCTURES. THESE SIX STRUCTURES WERE AVERAGED AND MINIMIZED TO GIVE THE FINAL STRUCTURE PRESENTED HERE. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR ? BRUNGER 1 'structure solution' X-PLOR 3.1 ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 THX "C1'" C N R 144 THX C10 C N N 145 THX C11 C N N 146 THX C12 C N N 147 THX C13 C N N 148 THX C14 C Y N 149 THX C15 C Y N 150 THX C16 C Y N 151 THX C17 C Y N 152 THX C18 C Y N 153 THX C19 C Y N 154 THX C2 C N N 155 THX "C2'" C N N 156 THX C20 C Y N 157 THX C21 C Y N 158 THX C22 C N N 159 THX C23 C N N 160 THX C24 C N N 161 THX C25 C Y N 162 THX C26 C Y N 163 THX C27 C Y N 164 THX C28 C Y N 165 THX C29 C Y N 166 THX "C3'" C N S 167 THX C30 C Y N 168 THX C31 C Y N 169 THX C32 C Y N 170 THX C33 C N N 171 THX C34 C N N 172 THX C35 C N N 173 THX C36 C Y N 174 THX C37 C Y N 175 THX C38 C Y N 176 THX C39 C Y N 177 THX C4 C N N 178 THX "C4'" C N R 179 THX C40 C Y N 180 THX C41 C Y N 181 THX C42 C Y N 182 THX C43 C Y N 183 THX C44 C N N 184 THX C45 C N N 185 THX C46 C N N 186 THX C5 C N N 187 THX "C5'" C N N 188 THX C5M C N N 189 THX C6 C N N 190 THX C7 C N N 191 THX C8 C N N 192 THX C9 C N N 193 THX N1 N N N 194 THX N10 N N N 195 THX N15 N N N 196 THX N3 N N N 197 THX N4 N N N 198 THX N5 N Y N 199 THX N6 N N N 200 THX N7 N Y N 201 THX N8 N N N 202 THX N9 N Y N 203 THX O1P O N N 204 THX O2 O N N 205 THX O2P O N N 206 THX "O3'" O N N 207 THX O3P O N N 208 THX O4 O N N 209 THX "O4'" O N N 210 THX "O5'" O N N 211 THX O6 O N N 212 THX O7 O N N 213 THX O8 O N N 214 THX O9 O N N 215 THX P P N S 216 THX "H1'" H N N 217 THX H101 H N N 218 THX H102 H N N 219 THX H111 H N N 220 THX H112 H N N 221 THX H121 H N N 222 THX H122 H N N 223 THX H15 H N N 224 THX H18 H N N 225 THX H19 H N N 226 THX "H2'1" H N N 227 THX "H2'2" H N N 228 THX H221 H N N 229 THX H222 H N N 230 THX H231 H N N 231 THX H232 H N N 232 THX H26 H N N 233 THX H29 H N N 234 THX "H3'" H N N 235 THX H30 H N N 236 THX H331 H N N 237 THX H332 H N N 238 THX H341 H N N 239 THX H342 H N N 240 THX H37 H N N 241 THX "H4'" H N N 242 THX H40 H N N 243 THX H41 H N N 244 THX H441 H N N 245 THX H442 H N N 246 THX H451 H N N 247 THX H452 H N N 248 THX "H5'1" H N N 249 THX "H5'2" H N N 250 THX H5M1 H N N 251 THX H5M2 H N N 252 THX H5M3 H N N 253 THX H6 H N N 254 THX H71 H N N 255 THX H72 H N N 256 THX H81 H N N 257 THX H82 H N N 258 THX H91 H N N 259 THX H92 H N N 260 THX H151 H N N 261 THX H152 H N N 262 THX H3 H N N 263 THX HN4 H N N 264 THX HN5 H N N 265 THX HN7 H N N 266 THX HN9 H N N 267 THX HOP2 H N N 268 THX "HO'3" H N N 269 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 THX "C1'" "C2'" sing N N 150 THX "C1'" N1 sing N N 151 THX "C1'" "O4'" sing N N 152 THX "C1'" "H1'" sing N N 153 THX C10 C11 sing N N 154 THX C10 C9 sing N N 155 THX C10 H101 sing N N 156 THX C10 H102 sing N N 157 THX C11 C12 sing N N 158 THX C11 H111 sing N N 159 THX C11 H112 sing N N 160 THX C12 N4 sing N N 161 THX C12 H121 sing N N 162 THX C12 H122 sing N N 163 THX C13 C14 sing N N 164 THX C13 N4 sing N N 165 THX C13 O6 doub N N 166 THX C14 C15 doub Y N 167 THX C14 N5 sing Y N 168 THX C15 C16 sing Y N 169 THX C15 H15 sing N N 170 THX C16 C17 sing Y N 171 THX C16 C21 doub Y N 172 THX C17 C18 doub Y N 173 THX C17 N5 sing Y N 174 THX C18 C19 sing Y N 175 THX C18 H18 sing N N 176 THX C19 C20 doub Y N 177 THX C19 H19 sing N N 178 THX C2 N1 sing N N 179 THX C2 N3 sing N N 180 THX C2 O2 doub N N 181 THX "C2'" "C3'" sing N N 182 THX "C2'" "H2'1" sing N N 183 THX "C2'" "H2'2" sing N N 184 THX C20 C21 sing Y N 185 THX C20 N6 sing N N 186 THX C21 C22 sing N N 187 THX C22 C23 sing N N 188 THX C22 H221 sing N N 189 THX C22 H222 sing N N 190 THX C23 N6 sing N N 191 THX C23 H231 sing N N 192 THX C23 H232 sing N N 193 THX C24 C25 sing N N 194 THX C24 N6 sing N N 195 THX C24 O7 doub N N 196 THX C25 C26 doub Y N 197 THX C25 N7 sing Y N 198 THX C26 C27 sing Y N 199 THX C26 H26 sing N N 200 THX C27 C28 sing Y N 201 THX C27 C32 doub Y N 202 THX C28 C29 doub Y N 203 THX C28 N7 sing Y N 204 THX C29 C30 sing Y N 205 THX C29 H29 sing N N 206 THX "C3'" "C4'" sing N N 207 THX "C3'" "O3'" sing N N 208 THX "C3'" "H3'" sing N N 209 THX C30 C31 doub Y N 210 THX C30 H30 sing N N 211 THX C31 C32 sing Y N 212 THX C31 N8 sing N N 213 THX C32 C33 sing N N 214 THX C33 C34 sing N N 215 THX C33 H331 sing N N 216 THX C33 H332 sing N N 217 THX C34 N8 sing N N 218 THX C34 H341 sing N N 219 THX C34 H342 sing N N 220 THX C35 C36 sing N N 221 THX C35 N8 sing N N 222 THX C35 O8 doub N N 223 THX C36 C37 doub Y N 224 THX C36 N9 sing Y N 225 THX C37 C38 sing Y N 226 THX C37 H37 sing N N 227 THX C38 C39 sing Y N 228 THX C38 C43 doub Y N 229 THX C39 C40 doub Y N 230 THX C39 N9 sing Y N 231 THX C4 C5 sing N N 232 THX C4 N3 sing N N 233 THX C4 O4 doub N N 234 THX "C4'" "C5'" sing N N 235 THX "C4'" "O4'" sing N N 236 THX "C4'" "H4'" sing N N 237 THX C40 C41 sing Y N 238 THX C40 H40 sing N N 239 THX C41 C42 doub Y N 240 THX C41 H41 sing N N 241 THX C42 C43 sing Y N 242 THX C42 N10 sing N N 243 THX C43 C44 sing N N 244 THX C44 C45 sing N N 245 THX C44 H441 sing N N 246 THX C44 H442 sing N N 247 THX C45 N10 sing N N 248 THX C45 H451 sing N N 249 THX C45 H452 sing N N 250 THX C46 N10 sing N N 251 THX C46 N15 sing N N 252 THX C46 O9 doub N N 253 THX C5 C5M sing N N 254 THX C5 C6 doub N N 255 THX "C5'" "O5'" sing N N 256 THX "C5'" "H5'1" sing N N 257 THX "C5'" "H5'2" sing N N 258 THX C5M H5M1 sing N N 259 THX C5M H5M2 sing N N 260 THX C5M H5M3 sing N N 261 THX C6 N1 sing N N 262 THX C6 H6 sing N N 263 THX C7 C8 sing N N 264 THX C7 O3P sing N N 265 THX C7 H71 sing N N 266 THX C7 H72 sing N N 267 THX C8 C9 sing N N 268 THX C8 H81 sing N N 269 THX C8 H82 sing N N 270 THX C9 H91 sing N N 271 THX C9 H92 sing N N 272 THX N15 H151 sing N N 273 THX N15 H152 sing N N 274 THX N3 H3 sing N N 275 THX N4 HN4 sing N N 276 THX N5 HN5 sing N N 277 THX N7 HN7 sing N N 278 THX N9 HN9 sing N N 279 THX O1P P doub N N 280 THX O2P P sing N N 281 THX O2P HOP2 sing N N 282 THX "O3'" "HO'3" sing N N 283 THX O3P P sing N N 284 THX "O5'" P sing N N 285 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1AUL 'double helix' 1AUL 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 9 1_555 0.840 0.149 0.941 0.709 7.219 26.294 1 A_DG2:DC19_B A 2 ? B 19 ? ? 1 1 A DA 3 1_555 B DT 8 1_555 -1.088 -0.539 0.744 3.244 -20.653 14.693 2 A_DA3:DT18_B A 3 ? B 18 ? 20 1 1 A DT 4 1_555 B DA 7 1_555 0.144 -0.460 1.258 -24.666 -11.516 14.899 3 A_DT4:DA17_B A 4 ? B 17 ? 20 1 1 A DT 5 1_555 B DA 6 1_555 -0.283 -0.212 0.534 -9.415 -1.416 4.457 4 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.467 -0.077 -0.465 -1.083 -6.569 -6.322 5 A_DA6:DT15_B A 6 ? B 15 ? 20 1 1 A DT 7 1_555 B DA 4 1_555 -0.175 -0.122 -0.590 16.877 -14.113 1.194 6 A_DT7:DA14_B A 7 ? B 14 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.684 -0.242 -0.424 7.590 -8.338 3.882 7 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DT 9 1_555 B DA 2 1_555 0.400 -0.259 0.176 9.588 -7.991 -5.710 8 A_DT9:DA12_B A 9 ? B 12 ? 20 1 1 A DG 10 1_555 B DC 1 1_555 -0.616 -0.342 0.206 6.923 1.045 -3.536 9 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 9 1_555 A DA 3 1_555 B DT 8 1_555 0.023 -0.895 3.171 9.932 7.125 26.185 -3.287 2.032 2.674 14.748 -20.557 28.852 1 AA_DG2DA3:DT18DC19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DA 3 1_555 B DT 8 1_555 A DT 4 1_555 B DA 7 1_555 0.458 -0.197 4.347 -0.655 9.642 41.736 -1.545 -0.715 4.196 13.320 0.905 42.791 2 AA_DA3DT4:DA17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DT 4 1_555 B DA 7 1_555 A DT 5 1_555 B DA 6 1_555 -0.064 -0.560 3.031 3.245 3.791 29.174 -1.830 0.755 2.913 7.458 -6.383 29.589 3 AA_DT4DT5:DA16DA17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 -0.531 -1.104 2.762 10.725 6.010 33.881 -2.467 2.074 2.273 9.916 -17.696 35.981 4 AA_DT5DA6:DT15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DA 6 1_555 B DT 5 1_555 A DT 7 1_555 B DA 4 1_555 0.506 -0.384 2.782 -0.186 6.151 34.183 -1.435 -0.871 2.672 10.360 0.313 34.716 5 AA_DA6DT7:DA14DT15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DT 7 1_555 B DA 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.478 -0.453 3.388 0.019 11.535 37.015 -2.124 0.723 3.115 17.651 -0.029 38.710 6 AA_DT7DC8:DG13DA14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DT 9 1_555 B DA 2 1_555 -0.102 -0.869 3.505 -4.169 -5.778 36.846 -0.524 -0.439 3.586 -9.038 6.521 37.505 7 AA_DC8DT9:DA12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DT 9 1_555 B DA 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.705 -1.955 2.927 -10.600 2.490 28.346 -4.194 -0.595 2.824 4.864 20.704 30.325 8 AA_DT9DG10:DC11DA12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model UNITYPLUS _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 # _atom_sites.entry_id 1AUL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_