HEADER DEOXYRIBONUCLEASE 18-SEP-97 1AVQ TITLE TOROIDAL STRUCTURE OF LAMBDA EXONUCLEASE DETERMINED AT 2.4 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMBDA EXONUCLEASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: RED ALPHA; COMPND 5 EC: 3.1.11.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710; SOURCE 4 CELL_LINE: BL21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28(A+) KEYWDS DEOXYRIBONUCLEASE, DNA RECOMBINATION AND REPAIR, 5'-3' EXONUCLEASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.KOVALL,B.W.MATTHEWS REVDAT 4 07-FEB-24 1AVQ 1 REMARK REVDAT 3 17-JUL-19 1AVQ 1 REMARK REVDAT 2 24-FEB-09 1AVQ 1 VERSN REVDAT 1 18-MAR-98 1AVQ 0 JRNL AUTH R.KOVALL,B.W.MATTHEWS JRNL TITL TOROIDAL STRUCTURE OF LAMBDA-EXONUCLEASE. JRNL REF SCIENCE V. 277 1824 1997 JRNL REFN ISSN 0036-8075 JRNL PMID 9295273 JRNL DOI 10.1126/SCIENCE.277.5333.1824 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 62855 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1980 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 62855 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5486 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 416 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 27.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.017 ; 1.000 ; 5647 REMARK 3 BOND ANGLES (DEGREES) : 2.600 ; 1.800 ; 7598 REMARK 3 TORSION ANGLES (DEGREES) : 17.950; 0.000 ; 3321 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.019 ; 1.100 ; 144 REMARK 3 GENERAL PLANES (A) : 0.018 ; 4.800 ; 815 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 5.850 ; 1.200 ; 5635 REMARK 3 NON-BONDED CONTACTS (A) : 0.027 ; 10.000; 88 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : TNT SOLVENT MODEL REMARK 3 KSOL : 0.92 REMARK 3 BSOL : 235.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT BCORREL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC SCALE FACTORS: B11 B22=7.26 REMARK 3 B33=-14.53 REMARK 4 REMARK 4 1AVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JAN-97 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62855 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25100 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR WITH ANOMALOUS REMARK 200 DISPERSION REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 1.2 M REMARK 280 NH2SO4, 0.2 M NACL 0.1 M NAACETATE PH 4.7, AT 4 DEGREES CELSIUS., REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.85000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 78.35000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 78.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.92500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 78.35000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 78.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 98.77500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 78.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.35000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.92500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 78.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.35000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.77500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 338 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 18 CD GLU A 18 OE2 0.072 REMARK 500 GLU A 64 CD GLU A 64 OE2 0.079 REMARK 500 GLU A 72 CD GLU A 72 OE2 0.079 REMARK 500 GLU A 102 CD GLU A 102 OE2 0.084 REMARK 500 GLU A 129 CD GLU A 129 OE1 0.095 REMARK 500 GLU A 148 CD GLU A 148 OE2 0.087 REMARK 500 GLU A 182 CD GLU A 182 OE1 0.093 REMARK 500 GLU A 190 CD GLU A 190 OE2 0.069 REMARK 500 GLU A 201 CD GLU A 201 OE2 0.096 REMARK 500 GLU A 205 CD GLU A 205 OE2 0.081 REMARK 500 GLU A 208 CD GLU A 208 OE2 0.084 REMARK 500 GLU A 216 CD GLU A 216 OE1 0.094 REMARK 500 GLU B 36 CD GLU B 36 OE2 0.078 REMARK 500 GLU B 72 CD GLU B 72 OE1 0.075 REMARK 500 GLU B 85 CD GLU B 85 OE1 0.083 REMARK 500 GLU B 93 CD GLU B 93 OE2 0.069 REMARK 500 GLU B 102 CD GLU B 102 OE1 0.091 REMARK 500 GLU B 148 CD GLU B 148 OE2 0.084 REMARK 500 GLU B 201 CD GLU B 201 OE1 0.080 REMARK 500 GLU B 205 CD GLU B 205 OE2 0.071 REMARK 500 GLU B 208 CD GLU B 208 OE2 0.101 REMARK 500 GLU B 212 CD GLU B 212 OE2 0.069 REMARK 500 GLU B 216 CD GLU B 216 OE1 0.087 REMARK 500 GLU C 18 CD GLU C 18 OE2 0.078 REMARK 500 GLU C 72 CD GLU C 72 OE1 0.114 REMARK 500 GLU C 85 CD GLU C 85 OE2 0.080 REMARK 500 GLU C 102 CD GLU C 102 OE1 0.084 REMARK 500 GLU C 110 CD GLU C 110 OE2 0.091 REMARK 500 GLU C 148 CD GLU C 148 OE2 0.080 REMARK 500 GLU C 190 CD GLU C 190 OE2 0.078 REMARK 500 GLU C 201 CD GLU C 201 OE1 0.083 REMARK 500 GLU C 208 CD GLU C 208 OE2 0.078 REMARK 500 GLU C 212 CD GLU C 212 OE2 0.068 REMARK 500 GLU C 216 CD GLU C 216 OE1 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = -9.9 DEGREES REMARK 500 ASP A 4 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 13 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 13 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 21 CB - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 ASP A 21 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 21 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 22 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 87 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 GLU A 102 CG - CD - OE2 ANGL. DEV. = -12.8 DEGREES REMARK 500 SER A 103 N - CA - CB ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO A 104 C - N - CD ANGL. DEV. = -30.8 DEGREES REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 119 CB - CG - OD1 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 119 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 124 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 LEU A 130 CB - CA - C ANGL. DEV. = -13.4 DEGREES REMARK 500 LYS A 131 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 143 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 143 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 PHE A 147 N - CA - CB ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG A 166 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 166 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 176 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 176 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ILE A 189 CA - CB - CG1 ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG A 191 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 191 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 192 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 192 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 200 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 13 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 13 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 15 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP B 21 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP B 22 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG B 28 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 28 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 PRO B 51 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 ASP B 87 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 89 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 PRO B 104 C - N - CD ANGL. DEV. = -36.2 DEGREES REMARK 500 ARG B 108 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP B 109 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 78 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 21 173.74 -41.87 REMARK 500 PRO A 104 -95.76 -17.14 REMARK 500 CYS A 132 77.90 -117.50 REMARK 500 SER A 152 -50.24 -25.76 REMARK 500 ARG B 45 -24.31 -37.38 REMARK 500 PRO B 104 -95.62 -23.41 REMARK 500 SER B 123 -30.69 -37.84 REMARK 500 ASP C 21 144.17 -34.56 REMARK 500 SER C 46 148.54 -172.83 REMARK 500 PRO C 51 171.82 -55.56 REMARK 500 ASN C 74 60.23 37.84 REMARK 500 PRO C 104 -74.93 -29.84 REMARK 500 ILE C 105 135.80 175.34 REMARK 500 CYS C 132 75.86 -117.08 REMARK 500 ILE C 150 126.83 -29.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 229 DBREF 1AVQ A 1 226 UNP P03697 EXO_LAMBD 1 226 DBREF 1AVQ B 1 226 UNP P03697 EXO_LAMBD 1 226 DBREF 1AVQ C 1 226 UNP P03697 EXO_LAMBD 1 226 SEQRES 1 A 228 SER HIS MET THR PRO ASP ILE ILE LEU GLN ARG THR GLY SEQRES 2 A 228 ILE ASP VAL ARG ALA VAL GLU GLN GLY ASP ASP ALA TRP SEQRES 3 A 228 HIS LYS LEU ARG LEU GLY VAL ILE THR ALA SER GLU VAL SEQRES 4 A 228 HIS ASN VAL ILE ALA LYS PRO ARG SER GLY LYS LYS TRP SEQRES 5 A 228 PRO ASP MET LYS MET SER TYR PHE HIS THR LEU LEU ALA SEQRES 6 A 228 GLU VAL CYS THR GLY VAL ALA PRO GLU VAL ASN ALA LYS SEQRES 7 A 228 ALA LEU ALA TRP GLY LYS GLN TYR GLU ASN ASP ALA ARG SEQRES 8 A 228 THR LEU PHE GLU PHE THR SER GLY VAL ASN VAL THR GLU SEQRES 9 A 228 SER PRO ILE ILE TYR ARG ASP GLU SER MET ARG THR ALA SEQRES 10 A 228 CYS SER PRO ASP GLY LEU CYS SER ASP GLY ASN GLY LEU SEQRES 11 A 228 GLU LEU LYS CYS PRO PHE THR SER ARG ASP PHE MET LYS SEQRES 12 A 228 PHE ARG LEU GLY GLY PHE GLU ALA ILE LYS SER ALA TYR SEQRES 13 A 228 MET ALA GLN VAL GLN TYR SER MET TRP VAL THR ARG LYS SEQRES 14 A 228 ASN ALA TRP TYR PHE ALA ASN TYR ASP PRO ARG MET LYS SEQRES 15 A 228 ARG GLU GLY LEU HIS TYR VAL VAL ILE GLU ARG ASP GLU SEQRES 16 A 228 LYS TYR MET ALA SER PHE ASP GLU ILE VAL PRO GLU PHE SEQRES 17 A 228 ILE GLU LYS MET ASP GLU ALA LEU ALA GLU ILE GLY PHE SEQRES 18 A 228 VAL PHE GLY GLU GLN TRP ARG SEQRES 1 B 228 SER HIS MET THR PRO ASP ILE ILE LEU GLN ARG THR GLY SEQRES 2 B 228 ILE ASP VAL ARG ALA VAL GLU GLN GLY ASP ASP ALA TRP SEQRES 3 B 228 HIS LYS LEU ARG LEU GLY VAL ILE THR ALA SER GLU VAL SEQRES 4 B 228 HIS ASN VAL ILE ALA LYS PRO ARG SER GLY LYS LYS TRP SEQRES 5 B 228 PRO ASP MET LYS MET SER TYR PHE HIS THR LEU LEU ALA SEQRES 6 B 228 GLU VAL CYS THR GLY VAL ALA PRO GLU VAL ASN ALA LYS SEQRES 7 B 228 ALA LEU ALA TRP GLY LYS GLN TYR GLU ASN ASP ALA ARG SEQRES 8 B 228 THR LEU PHE GLU PHE THR SER GLY VAL ASN VAL THR GLU SEQRES 9 B 228 SER PRO ILE ILE TYR ARG ASP GLU SER MET ARG THR ALA SEQRES 10 B 228 CYS SER PRO ASP GLY LEU CYS SER ASP GLY ASN GLY LEU SEQRES 11 B 228 GLU LEU LYS CYS PRO PHE THR SER ARG ASP PHE MET LYS SEQRES 12 B 228 PHE ARG LEU GLY GLY PHE GLU ALA ILE LYS SER ALA TYR SEQRES 13 B 228 MET ALA GLN VAL GLN TYR SER MET TRP VAL THR ARG LYS SEQRES 14 B 228 ASN ALA TRP TYR PHE ALA ASN TYR ASP PRO ARG MET LYS SEQRES 15 B 228 ARG GLU GLY LEU HIS TYR VAL VAL ILE GLU ARG ASP GLU SEQRES 16 B 228 LYS TYR MET ALA SER PHE ASP GLU ILE VAL PRO GLU PHE SEQRES 17 B 228 ILE GLU LYS MET ASP GLU ALA LEU ALA GLU ILE GLY PHE SEQRES 18 B 228 VAL PHE GLY GLU GLN TRP ARG SEQRES 1 C 228 SER HIS MET THR PRO ASP ILE ILE LEU GLN ARG THR GLY SEQRES 2 C 228 ILE ASP VAL ARG ALA VAL GLU GLN GLY ASP ASP ALA TRP SEQRES 3 C 228 HIS LYS LEU ARG LEU GLY VAL ILE THR ALA SER GLU VAL SEQRES 4 C 228 HIS ASN VAL ILE ALA LYS PRO ARG SER GLY LYS LYS TRP SEQRES 5 C 228 PRO ASP MET LYS MET SER TYR PHE HIS THR LEU LEU ALA SEQRES 6 C 228 GLU VAL CYS THR GLY VAL ALA PRO GLU VAL ASN ALA LYS SEQRES 7 C 228 ALA LEU ALA TRP GLY LYS GLN TYR GLU ASN ASP ALA ARG SEQRES 8 C 228 THR LEU PHE GLU PHE THR SER GLY VAL ASN VAL THR GLU SEQRES 9 C 228 SER PRO ILE ILE TYR ARG ASP GLU SER MET ARG THR ALA SEQRES 10 C 228 CYS SER PRO ASP GLY LEU CYS SER ASP GLY ASN GLY LEU SEQRES 11 C 228 GLU LEU LYS CYS PRO PHE THR SER ARG ASP PHE MET LYS SEQRES 12 C 228 PHE ARG LEU GLY GLY PHE GLU ALA ILE LYS SER ALA TYR SEQRES 13 C 228 MET ALA GLN VAL GLN TYR SER MET TRP VAL THR ARG LYS SEQRES 14 C 228 ASN ALA TRP TYR PHE ALA ASN TYR ASP PRO ARG MET LYS SEQRES 15 C 228 ARG GLU GLY LEU HIS TYR VAL VAL ILE GLU ARG ASP GLU SEQRES 16 C 228 LYS TYR MET ALA SER PHE ASP GLU ILE VAL PRO GLU PHE SEQRES 17 C 228 ILE GLU LYS MET ASP GLU ALA LEU ALA GLU ILE GLY PHE SEQRES 18 C 228 VAL PHE GLY GLU GLN TRP ARG HET PO4 A 227 5 HET ACT A 228 4 HET PO4 B 227 5 HET ACT B 228 4 HET PO4 C 227 5 HET ACT C 228 4 HET ACT C 229 4 HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION FORMUL 4 PO4 3(O4 P 3-) FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 11 HOH *416(H2 O) HELIX 1 1 PRO A 3 THR A 10 1 8 HELIX 2 2 VAL A 14 ALA A 16 5 3 HELIX 3 3 ASP A 22 LYS A 26 1 5 HELIX 4 4 ALA A 34 VAL A 40 5 7 HELIX 5 5 ASP A 52 THR A 67 1 16 HELIX 6 6 ALA A 75 THR A 95 1 21 HELIX 7 7 SER A 136 ALA A 149 1 14 HELIX 8 8 SER A 152 THR A 165 1 14 HELIX 9 9 GLU A 193 GLU A 216 1 24 HELIX 10 10 GLU A 223 TRP A 225 1 3 HELIX 11 11 PRO B 3 THR B 10 1 8 HELIX 12 12 VAL B 14 ALA B 16 5 3 HELIX 13 13 ASP B 22 LYS B 26 1 5 HELIX 14 14 ALA B 34 VAL B 40 5 7 HELIX 15 15 ASP B 52 THR B 67 1 16 HELIX 16 16 ALA B 75 THR B 95 1 21 HELIX 17 17 SER B 136 ALA B 149 1 14 HELIX 18 18 SER B 152 THR B 165 1 14 HELIX 19 19 GLU B 193 GLU B 216 1 24 HELIX 20 20 GLU B 223 TRP B 225 1 3 HELIX 21 21 PRO C 3 THR C 10 1 8 HELIX 22 22 VAL C 14 ALA C 16 5 3 HELIX 23 23 ASP C 22 LYS C 26 1 5 HELIX 24 24 ALA C 34 VAL C 40 5 7 HELIX 25 25 ASP C 52 THR C 67 1 16 HELIX 26 26 ALA C 75 THR C 95 1 21 HELIX 27 27 SER C 136 ALA C 149 1 14 HELIX 28 28 SER C 152 THR C 165 1 14 HELIX 29 29 GLU C 193 GLU C 216 1 24 HELIX 30 30 GLU C 223 TRP C 225 1 3 SHEET 1 A1 4 VAL A 100 THR A 101 0 SHEET 2 A1 4 ILE A 106 TYR A 107 1 SHEET 3 A1 4 THR A 114 CYS A 116 -1 SHEET 4 A1 4 GLY A 120 CYS A 122 -1 SHEET 1 A2 3 GLY A 127 LYS A 131 0 SHEET 2 A2 3 ALA A 169 TYR A 175 1 SHEET 3 A2 3 LEU A 184 GLU A 190 -1 SHEET 1 B1 4 VAL B 100 THR B 101 0 SHEET 2 B1 4 ILE B 106 TYR B 107 1 SHEET 3 B1 4 THR B 114 CYS B 116 -1 SHEET 4 B1 4 GLY B 120 CYS B 122 -1 SHEET 1 B2 3 GLY B 127 LYS B 131 0 SHEET 2 B2 3 ALA B 169 TYR B 175 1 SHEET 3 B2 3 LEU B 184 GLU B 190 -1 SHEET 1 C1 4 VAL C 100 THR C 101 0 SHEET 2 C1 4 ILE C 106 TYR C 107 1 SHEET 3 C1 4 THR C 114 CYS C 116 -1 SHEET 4 C1 4 GLY C 120 CYS C 122 -1 SHEET 1 C2 3 GLY C 127 LYS C 131 0 SHEET 2 C2 3 ALA C 169 TYR C 175 1 SHEET 3 C2 3 LEU C 184 GLU C 190 -1 SITE 1 AC1 8 ARG A 28 THR A 33 ALA A 34 SER A 35 SITE 2 AC1 8 CYS A 116 SER A 117 GLN A 157 HOH A 267 SITE 1 AC2 8 ARG B 28 THR B 33 ALA B 34 SER B 35 SITE 2 AC2 8 CYS B 116 SER B 117 GLN B 157 HOH B 309 SITE 1 AC3 7 ARG C 28 THR C 33 ALA C 34 SER C 35 SITE 2 AC3 7 CYS C 116 SER C 117 HOH C 247 SITE 1 AC4 1 SER A 198 SITE 1 AC5 1 SER B 198 SITE 1 AC6 3 LYS C 194 TYR C 195 SER C 198 SITE 1 AC7 7 THR C 2 ILE C 5 ILE C 6 ASP C 109 SITE 2 AC7 7 GLU C 110 HOH C 237 HOH C 278 CRYST1 156.700 156.700 131.700 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007593 0.00000