data_1AWP # _entry.id 1AWP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AWP pdb_00001awp 10.2210/pdb1awp/pdb WWPDB D_1000171348 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AWP _pdbx_database_status.recvd_initial_deposition_date 1997-10-03 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, X.' 1 'Zhang, X.' 2 # _citation.id primary _citation.title 'The reduction potential of cytochrome b5 is modulated by its exposed heme edge.' _citation.journal_abbrev Biochemistry _citation.journal_volume 37 _citation.page_first 1485 _citation.page_last 1494 _citation.year 1998 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9484218 _citation.pdbx_database_id_DOI 10.1021/bi972390g # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rivera, M.' 1 ? primary 'Seetharaman, R.' 2 ? primary 'Girdhar, D.' 3 ? primary 'Wirtz, M.' 4 ? primary 'Zhang, X.' 5 ? primary 'Wang, X.' 6 ? primary 'White, S.' 7 ? # _cell.entry_id 1AWP _cell.length_a 45.640 _cell.length_b 71.190 _cell.length_c 73.780 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AWP _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CYTOCHROME B5' 10419.405 2 ? 'V45L, V61L' 'WATER SOLUBLE DOMAIN' ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 2 ? ? ? ? 3 water nat water 18.015 103 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DGQGSDPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATESFEDLGHSPDAREMLKQYY IGDVHPNDLKPK ; _entity_poly.pdbx_seq_one_letter_code_can ;DGQGSDPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATESFEDLGHSPDAREMLKQYY IGDVHPNDLKPK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 GLY n 1 3 GLN n 1 4 GLY n 1 5 SER n 1 6 ASP n 1 7 PRO n 1 8 ALA n 1 9 VAL n 1 10 THR n 1 11 TYR n 1 12 TYR n 1 13 ARG n 1 14 LEU n 1 15 GLU n 1 16 GLU n 1 17 VAL n 1 18 ALA n 1 19 LYS n 1 20 ARG n 1 21 ASN n 1 22 THR n 1 23 ALA n 1 24 GLU n 1 25 GLU n 1 26 THR n 1 27 TRP n 1 28 MET n 1 29 VAL n 1 30 ILE n 1 31 HIS n 1 32 GLY n 1 33 ARG n 1 34 VAL n 1 35 TYR n 1 36 ASP n 1 37 ILE n 1 38 THR n 1 39 ARG n 1 40 PHE n 1 41 LEU n 1 42 SER n 1 43 GLU n 1 44 HIS n 1 45 PRO n 1 46 GLY n 1 47 GLY n 1 48 GLU n 1 49 GLU n 1 50 LEU n 1 51 LEU n 1 52 LEU n 1 53 GLU n 1 54 GLN n 1 55 ALA n 1 56 GLY n 1 57 ALA n 1 58 ASP n 1 59 ALA n 1 60 THR n 1 61 GLU n 1 62 SER n 1 63 PHE n 1 64 GLU n 1 65 ASP n 1 66 LEU n 1 67 GLY n 1 68 HIS n 1 69 SER n 1 70 PRO n 1 71 ASP n 1 72 ALA n 1 73 ARG n 1 74 GLU n 1 75 MET n 1 76 LEU n 1 77 LYS n 1 78 GLN n 1 79 TYR n 1 80 TYR n 1 81 ILE n 1 82 GLY n 1 83 ASP n 1 84 VAL n 1 85 HIS n 1 86 PRO n 1 87 ASN n 1 88 ASP n 1 89 LEU n 1 90 LYS n 1 91 PRO n 1 92 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene POTENTIAL _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line BL21 _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ LIVER _entity_src_gen.pdbx_gene_src_organelle MITOCHONDRION _entity_src_gen.pdbx_gene_src_cell HEPATOCYTE _entity_src_gen.pdbx_gene_src_cellular_location 'OUTER MITOCHONDRIAL MEMBRANE' _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location 'PERIPLASMIC SPACE' _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET 11A' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CYM5_RAT _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P04166 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MATPEASGSGRNGQGSDPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHS PDAREMLKQYYIGDVHPNDLKPKDGDKDPSKNNSCQSSWAYWIVPIVGAILIGFLYRHFWADSKSS ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AWP A 2 ? 92 ? P04166 13 ? 103 ? -3 87 2 1 1AWP B 2 ? 92 ? P04166 13 ? 103 ? -3 87 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1AWP LEU A 50 ? UNP P04166 VAL 61 'engineered mutation' 45 1 1 1AWP LEU A 66 ? UNP P04166 VAL 77 'engineered mutation' 61 2 2 1AWP LEU B 50 ? UNP P04166 VAL 61 'engineered mutation' 45 3 2 1AWP LEU B 66 ? UNP P04166 VAL 77 'engineered mutation' 61 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1AWP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_percent_sol 54 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date 1997-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator CRYSTAL _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AWP _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 10.0 _reflns.d_resolution_high 2.0 _reflns.number_obs 16374 _reflns.number_all ? _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0750000 _reflns.pdbx_netI_over_sigmaI 32.42 _reflns.B_iso_Wilson_estimate 19.6 _reflns.pdbx_redundancy 3.2 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 92.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.2740000 _reflns_shell.meanI_over_sigI_obs 3.41 _reflns_shell.pdbx_redundancy 2.18 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1AWP _refine.ls_number_reflns_obs 16087 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF 1000000.00 _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8 _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs 97.4 _refine.ls_R_factor_obs 0.1802000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1802000 _refine.ls_R_factor_R_free 0.2250000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.75 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 37.3 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'NCS RESTRAINTS WERE USED IN INITIAL STEP OF REFINEMENT. BULK SOLVENT MODELING METHOD WAS USED.' _refine.pdbx_starting_model 'PDB ENTRY 1B5M' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1AWP _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 8.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1386 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 86 _refine_hist.number_atoms_solvent 103 _refine_hist.number_atoms_total 1575 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 8 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.156 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.20 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.565 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.0 _refine_ls_shell.d_res_low 2.09 _refine_ls_shell.number_reflns_R_work 1676 _refine_ls_shell.R_factor_R_work 0.3098000 _refine_ls_shell.percent_reflns_obs 92.96 _refine_ls_shell.R_factor_R_free 0.3356000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 9.91 _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 HEM.PAR HEM.TOP 'X-RAY DIFFRACTION' # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.548130 _struct_ncs_oper.matrix[1][2] 0.599700 _struct_ncs_oper.matrix[1][3] 0.583020 _struct_ncs_oper.matrix[2][1] -0.834430 _struct_ncs_oper.matrix[2][2] -0.439820 _struct_ncs_oper.matrix[2][3] -0.332090 _struct_ncs_oper.matrix[3][1] 0.057270 _struct_ncs_oper.matrix[3][2] -0.668520 _struct_ncs_oper.matrix[3][3] 0.741490 _struct_ncs_oper.vector[1] -9.96452 _struct_ncs_oper.vector[2] 88.53668 _struct_ncs_oper.vector[3] 11.72105 # _struct.entry_id 1AWP _struct.title 'RAT OUTER MITOCHONDRIAL MEMBRANE CYTOCHROME B5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AWP _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'CYTOCHROME, ELECTRON TRANSPORT, HEME' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 14 ? LYS A 19 ? LEU A 9 LYS A 14 1 ? 6 HELX_P HELX_P2 2 GLU A 49 ? GLN A 54 ? GLU A 44 GLN A 49 1 ? 6 HELX_P HELX_P3 3 THR A 60 ? ASP A 65 ? THR A 55 ASP A 60 1 ? 6 HELX_P HELX_P4 4 PRO A 70 ? GLN A 78 ? PRO A 65 GLN A 73 1 ? 9 HELX_P HELX_P5 5 PRO A 86 ? ASP A 88 ? PRO A 81 ASP A 83 5 ? 3 HELX_P HELX_P6 6 LEU B 14 ? LYS B 19 ? LEU B 9 LYS B 14 1 ? 6 HELX_P HELX_P7 7 THR B 38 ? GLU B 43 ? THR B 33 GLU B 38 5 ? 6 HELX_P HELX_P8 8 GLU B 49 ? GLN B 54 ? GLU B 44 GLN B 49 1 ? 6 HELX_P HELX_P9 9 THR B 60 ? ASP B 65 ? THR B 55 ASP B 60 1 ? 6 HELX_P HELX_P10 10 PRO B 70 ? TYR B 79 ? PRO B 65 TYR B 74 1 ? 10 HELX_P HELX_P11 11 PRO B 86 ? ASP B 88 ? PRO B 81 ASP B 83 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 44 NE2 ? ? ? 1_555 C HEM . FE ? ? A HIS 39 A HEM 201 1_555 ? ? ? ? ? ? ? 2.135 ? ? metalc2 metalc ? ? A HIS 68 NE2 ? ? ? 1_555 C HEM . FE ? ? A HIS 63 A HEM 201 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc3 metalc ? ? B HIS 44 NE2 ? ? ? 1_555 D HEM . FE ? ? B HIS 39 B HEM 201 1_555 ? ? ? ? ? ? ? 2.149 ? ? metalc4 metalc ? ? B HIS 68 NE2 ? ? ? 1_555 D HEM . FE ? ? B HIS 63 B HEM 201 1_555 ? ? ? ? ? ? ? 2.245 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 27 ? ILE A 30 ? TRP A 22 ILE A 25 A 2 ARG A 33 ? ASP A 36 ? ARG A 28 ASP A 31 A 3 TYR A 80 ? ASP A 83 ? TYR A 75 ASP A 78 B 1 TRP B 27 ? ILE B 30 ? TRP B 22 ILE B 25 B 2 ARG B 33 ? ASP B 36 ? ARG B 28 ASP B 31 B 3 TYR B 80 ? ASP B 83 ? TYR B 75 ASP B 78 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O MET A 28 ? O MET A 23 N TYR A 35 ? N TYR A 30 A 2 3 O VAL A 34 ? O VAL A 29 N GLY A 82 ? N GLY A 77 B 1 2 O MET B 28 ? O MET B 23 N TYR B 35 ? N TYR B 30 B 2 3 O VAL B 34 ? O VAL B 29 N GLY B 82 ? N GLY B 77 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A HEM 201 ? 12 'BINDING SITE FOR RESIDUE HEM A 201' AC2 Software B HEM 201 ? 14 'BINDING SITE FOR RESIDUE HEM B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 ILE A 37 ? ILE A 32 . ? 1_555 ? 2 AC1 12 PHE A 40 ? PHE A 35 . ? 1_555 ? 3 AC1 12 HIS A 44 ? HIS A 39 . ? 1_555 ? 4 AC1 12 PRO A 45 ? PRO A 40 . ? 1_555 ? 5 AC1 12 LEU A 51 ? LEU A 46 . ? 1_555 ? 6 AC1 12 SER A 62 ? SER A 57 . ? 1_555 ? 7 AC1 12 LEU A 66 ? LEU A 61 . ? 1_555 ? 8 AC1 12 HIS A 68 ? HIS A 63 . ? 1_555 ? 9 AC1 12 SER A 69 ? SER A 64 . ? 1_555 ? 10 AC1 12 HOH E . ? HOH A 233 . ? 1_555 ? 11 AC1 12 PRO B 70 ? PRO B 65 . ? 2_665 ? 12 AC1 12 ARG B 73 ? ARG B 68 . ? 2_665 ? 13 AC2 14 ILE B 30 ? ILE B 25 . ? 1_555 ? 14 AC2 14 ARG B 39 ? ARG B 34 . ? 4_556 ? 15 AC2 14 PHE B 40 ? PHE B 35 . ? 1_555 ? 16 AC2 14 HIS B 44 ? HIS B 39 . ? 1_555 ? 17 AC2 14 PRO B 45 ? PRO B 40 . ? 1_555 ? 18 AC2 14 LEU B 50 ? LEU B 45 . ? 1_555 ? 19 AC2 14 LEU B 51 ? LEU B 46 . ? 1_555 ? 20 AC2 14 PHE B 63 ? PHE B 58 . ? 1_555 ? 21 AC2 14 LEU B 66 ? LEU B 61 . ? 1_555 ? 22 AC2 14 HIS B 68 ? HIS B 63 . ? 1_555 ? 23 AC2 14 SER B 69 ? SER B 64 . ? 1_555 ? 24 AC2 14 ALA B 72 ? ALA B 67 . ? 1_555 ? 25 AC2 14 MET B 75 ? MET B 70 . ? 1_555 ? 26 AC2 14 LEU B 76 ? LEU B 71 . ? 1_555 ? # _database_PDB_matrix.entry_id 1AWP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1AWP _atom_sites.fract_transf_matrix[1][1] 0.021911 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014047 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013554 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 -4 ? ? ? A . n A 1 2 GLY 2 -3 ? ? ? A . n A 1 3 GLN 3 -2 ? ? ? A . n A 1 4 GLY 4 -1 ? ? ? A . n A 1 5 SER 5 0 ? ? ? A . n A 1 6 ASP 6 1 1 ASP ASP A . n A 1 7 PRO 7 2 2 PRO PRO A . n A 1 8 ALA 8 3 3 ALA ALA A . n A 1 9 VAL 9 4 4 VAL VAL A . n A 1 10 THR 10 5 5 THR THR A . n A 1 11 TYR 11 6 6 TYR TYR A . n A 1 12 TYR 12 7 7 TYR TYR A . n A 1 13 ARG 13 8 8 ARG ARG A . n A 1 14 LEU 14 9 9 LEU LEU A . n A 1 15 GLU 15 10 10 GLU GLU A . n A 1 16 GLU 16 11 11 GLU GLU A . n A 1 17 VAL 17 12 12 VAL VAL A . n A 1 18 ALA 18 13 13 ALA ALA A . n A 1 19 LYS 19 14 14 LYS LYS A . n A 1 20 ARG 20 15 15 ARG ARG A . n A 1 21 ASN 21 16 16 ASN ASN A . n A 1 22 THR 22 17 17 THR THR A . n A 1 23 ALA 23 18 18 ALA ALA A . n A 1 24 GLU 24 19 19 GLU GLU A . n A 1 25 GLU 25 20 20 GLU GLU A . n A 1 26 THR 26 21 21 THR THR A . n A 1 27 TRP 27 22 22 TRP TRP A . n A 1 28 MET 28 23 23 MET MET A . n A 1 29 VAL 29 24 24 VAL VAL A . n A 1 30 ILE 30 25 25 ILE ILE A . n A 1 31 HIS 31 26 26 HIS HIS A . n A 1 32 GLY 32 27 27 GLY GLY A . n A 1 33 ARG 33 28 28 ARG ARG A . n A 1 34 VAL 34 29 29 VAL VAL A . n A 1 35 TYR 35 30 30 TYR TYR A . n A 1 36 ASP 36 31 31 ASP ASP A . n A 1 37 ILE 37 32 32 ILE ILE A . n A 1 38 THR 38 33 33 THR THR A . n A 1 39 ARG 39 34 34 ARG ARG A . n A 1 40 PHE 40 35 35 PHE PHE A . n A 1 41 LEU 41 36 36 LEU LEU A . n A 1 42 SER 42 37 37 SER SER A . n A 1 43 GLU 43 38 38 GLU GLU A . n A 1 44 HIS 44 39 39 HIS HIS A . n A 1 45 PRO 45 40 40 PRO PRO A . n A 1 46 GLY 46 41 41 GLY GLY A . n A 1 47 GLY 47 42 42 GLY GLY A . n A 1 48 GLU 48 43 43 GLU GLU A . n A 1 49 GLU 49 44 44 GLU GLU A . n A 1 50 LEU 50 45 45 LEU LEU A . n A 1 51 LEU 51 46 46 LEU LEU A . n A 1 52 LEU 52 47 47 LEU LEU A . n A 1 53 GLU 53 48 48 GLU GLU A . n A 1 54 GLN 54 49 49 GLN GLN A . n A 1 55 ALA 55 50 50 ALA ALA A . n A 1 56 GLY 56 51 51 GLY GLY A . n A 1 57 ALA 57 52 52 ALA ALA A . n A 1 58 ASP 58 53 53 ASP ASP A . n A 1 59 ALA 59 54 54 ALA ALA A . n A 1 60 THR 60 55 55 THR THR A . n A 1 61 GLU 61 56 56 GLU GLU A . n A 1 62 SER 62 57 57 SER SER A . n A 1 63 PHE 63 58 58 PHE PHE A . n A 1 64 GLU 64 59 59 GLU GLU A . n A 1 65 ASP 65 60 60 ASP ASP A . n A 1 66 LEU 66 61 61 LEU LEU A . n A 1 67 GLY 67 62 62 GLY GLY A . n A 1 68 HIS 68 63 63 HIS HIS A . n A 1 69 SER 69 64 64 SER SER A . n A 1 70 PRO 70 65 65 PRO PRO A . n A 1 71 ASP 71 66 66 ASP ASP A . n A 1 72 ALA 72 67 67 ALA ALA A . n A 1 73 ARG 73 68 68 ARG ARG A . n A 1 74 GLU 74 69 69 GLU GLU A . n A 1 75 MET 75 70 70 MET MET A . n A 1 76 LEU 76 71 71 LEU LEU A . n A 1 77 LYS 77 72 72 LYS LYS A . n A 1 78 GLN 78 73 73 GLN GLN A . n A 1 79 TYR 79 74 74 TYR TYR A . n A 1 80 TYR 80 75 75 TYR TYR A . n A 1 81 ILE 81 76 76 ILE ILE A . n A 1 82 GLY 82 77 77 GLY GLY A . n A 1 83 ASP 83 78 78 ASP ASP A . n A 1 84 VAL 84 79 79 VAL VAL A . n A 1 85 HIS 85 80 80 HIS HIS A . n A 1 86 PRO 86 81 81 PRO PRO A . n A 1 87 ASN 87 82 82 ASN ASN A . n A 1 88 ASP 88 83 83 ASP ASP A . n A 1 89 LEU 89 84 84 LEU LEU A . n A 1 90 LYS 90 85 85 LYS LYS A . n A 1 91 PRO 91 86 86 PRO PRO A . n A 1 92 LYS 92 87 ? ? ? A . n B 1 1 ASP 1 -4 ? ? ? B . n B 1 2 GLY 2 -3 ? ? ? B . n B 1 3 GLN 3 -2 ? ? ? B . n B 1 4 GLY 4 -1 ? ? ? B . n B 1 5 SER 5 0 ? ? ? B . n B 1 6 ASP 6 1 1 ASP ASP B . n B 1 7 PRO 7 2 2 PRO PRO B . n B 1 8 ALA 8 3 3 ALA ALA B . n B 1 9 VAL 9 4 4 VAL VAL B . n B 1 10 THR 10 5 5 THR THR B . n B 1 11 TYR 11 6 6 TYR TYR B . n B 1 12 TYR 12 7 7 TYR TYR B . n B 1 13 ARG 13 8 8 ARG ARG B . n B 1 14 LEU 14 9 9 LEU LEU B . n B 1 15 GLU 15 10 10 GLU GLU B . n B 1 16 GLU 16 11 11 GLU GLU B . n B 1 17 VAL 17 12 12 VAL VAL B . n B 1 18 ALA 18 13 13 ALA ALA B . n B 1 19 LYS 19 14 14 LYS LYS B . n B 1 20 ARG 20 15 15 ARG ARG B . n B 1 21 ASN 21 16 16 ASN ASN B . n B 1 22 THR 22 17 17 THR THR B . n B 1 23 ALA 23 18 18 ALA ALA B . n B 1 24 GLU 24 19 19 GLU GLU B . n B 1 25 GLU 25 20 20 GLU GLU B . n B 1 26 THR 26 21 21 THR THR B . n B 1 27 TRP 27 22 22 TRP TRP B . n B 1 28 MET 28 23 23 MET MET B . n B 1 29 VAL 29 24 24 VAL VAL B . n B 1 30 ILE 30 25 25 ILE ILE B . n B 1 31 HIS 31 26 26 HIS HIS B . n B 1 32 GLY 32 27 27 GLY GLY B . n B 1 33 ARG 33 28 28 ARG ARG B . n B 1 34 VAL 34 29 29 VAL VAL B . n B 1 35 TYR 35 30 30 TYR TYR B . n B 1 36 ASP 36 31 31 ASP ASP B . n B 1 37 ILE 37 32 32 ILE ILE B . n B 1 38 THR 38 33 33 THR THR B . n B 1 39 ARG 39 34 34 ARG ARG B . n B 1 40 PHE 40 35 35 PHE PHE B . n B 1 41 LEU 41 36 36 LEU LEU B . n B 1 42 SER 42 37 37 SER SER B . n B 1 43 GLU 43 38 38 GLU GLU B . n B 1 44 HIS 44 39 39 HIS HIS B . n B 1 45 PRO 45 40 40 PRO PRO B . n B 1 46 GLY 46 41 41 GLY GLY B . n B 1 47 GLY 47 42 42 GLY GLY B . n B 1 48 GLU 48 43 43 GLU GLU B . n B 1 49 GLU 49 44 44 GLU GLU B . n B 1 50 LEU 50 45 45 LEU LEU B . n B 1 51 LEU 51 46 46 LEU LEU B . n B 1 52 LEU 52 47 47 LEU LEU B . n B 1 53 GLU 53 48 48 GLU GLU B . n B 1 54 GLN 54 49 49 GLN GLN B . n B 1 55 ALA 55 50 50 ALA ALA B . n B 1 56 GLY 56 51 51 GLY GLY B . n B 1 57 ALA 57 52 52 ALA ALA B . n B 1 58 ASP 58 53 53 ASP ASP B . n B 1 59 ALA 59 54 54 ALA ALA B . n B 1 60 THR 60 55 55 THR THR B . n B 1 61 GLU 61 56 56 GLU GLU B . n B 1 62 SER 62 57 57 SER SER B . n B 1 63 PHE 63 58 58 PHE PHE B . n B 1 64 GLU 64 59 59 GLU GLU B . n B 1 65 ASP 65 60 60 ASP ASP B . n B 1 66 LEU 66 61 61 LEU LEU B . n B 1 67 GLY 67 62 62 GLY GLY B . n B 1 68 HIS 68 63 63 HIS HIS B . n B 1 69 SER 69 64 64 SER SER B . n B 1 70 PRO 70 65 65 PRO PRO B . n B 1 71 ASP 71 66 66 ASP ASP B . n B 1 72 ALA 72 67 67 ALA ALA B . n B 1 73 ARG 73 68 68 ARG ARG B . n B 1 74 GLU 74 69 69 GLU GLU B . n B 1 75 MET 75 70 70 MET MET B . n B 1 76 LEU 76 71 71 LEU LEU B . n B 1 77 LYS 77 72 72 LYS LYS B . n B 1 78 GLN 78 73 73 GLN GLN B . n B 1 79 TYR 79 74 74 TYR TYR B . n B 1 80 TYR 80 75 75 TYR TYR B . n B 1 81 ILE 81 76 76 ILE ILE B . n B 1 82 GLY 82 77 77 GLY GLY B . n B 1 83 ASP 83 78 78 ASP ASP B . n B 1 84 VAL 84 79 79 VAL VAL B . n B 1 85 HIS 85 80 80 HIS HIS B . n B 1 86 PRO 86 81 81 PRO PRO B . n B 1 87 ASN 87 82 82 ASN ASN B . n B 1 88 ASP 88 83 83 ASP ASP B . n B 1 89 LEU 89 84 84 LEU LEU B . n B 1 90 LYS 90 85 85 LYS LYS B . n B 1 91 PRO 91 86 86 PRO PRO B . n B 1 92 LYS 92 87 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM 1 201 201 HEM HEM A . D 2 HEM 1 201 201 HEM HEM B . E 3 HOH 1 202 1 HOH HOH A . E 3 HOH 2 203 2 HOH HOH A . E 3 HOH 3 204 4 HOH HOH A . E 3 HOH 4 205 7 HOH HOH A . E 3 HOH 5 206 8 HOH HOH A . E 3 HOH 6 207 12 HOH HOH A . E 3 HOH 7 208 16 HOH HOH A . E 3 HOH 8 209 20 HOH HOH A . E 3 HOH 9 210 21 HOH HOH A . E 3 HOH 10 211 24 HOH HOH A . E 3 HOH 11 212 26 HOH HOH A . E 3 HOH 12 213 29 HOH HOH A . E 3 HOH 13 214 31 HOH HOH A . E 3 HOH 14 215 32 HOH HOH A . E 3 HOH 15 216 33 HOH HOH A . E 3 HOH 16 217 36 HOH HOH A . E 3 HOH 17 218 37 HOH HOH A . E 3 HOH 18 219 39 HOH HOH A . E 3 HOH 19 220 40 HOH HOH A . E 3 HOH 20 221 41 HOH HOH A . E 3 HOH 21 222 42 HOH HOH A . E 3 HOH 22 223 44 HOH HOH A . E 3 HOH 23 224 45 HOH HOH A . E 3 HOH 24 225 49 HOH HOH A . E 3 HOH 25 226 50 HOH HOH A . E 3 HOH 26 227 55 HOH HOH A . E 3 HOH 27 228 58 HOH HOH A . E 3 HOH 28 229 59 HOH HOH A . E 3 HOH 29 230 63 HOH HOH A . E 3 HOH 30 231 65 HOH HOH A . E 3 HOH 31 232 66 HOH HOH A . E 3 HOH 32 233 69 HOH HOH A . E 3 HOH 33 234 70 HOH HOH A . E 3 HOH 34 235 71 HOH HOH A . E 3 HOH 35 236 73 HOH HOH A . E 3 HOH 36 237 77 HOH HOH A . E 3 HOH 37 238 84 HOH HOH A . E 3 HOH 38 239 85 HOH HOH A . E 3 HOH 39 240 86 HOH HOH A . E 3 HOH 40 241 87 HOH HOH A . E 3 HOH 41 242 88 HOH HOH A . E 3 HOH 42 243 89 HOH HOH A . E 3 HOH 43 244 91 HOH HOH A . E 3 HOH 44 245 92 HOH HOH A . E 3 HOH 45 246 93 HOH HOH A . E 3 HOH 46 247 95 HOH HOH A . E 3 HOH 47 248 96 HOH HOH A . E 3 HOH 48 249 97 HOH HOH A . E 3 HOH 49 250 102 HOH HOH A . E 3 HOH 50 251 103 HOH HOH A . F 3 HOH 1 202 3 HOH HOH B . F 3 HOH 2 203 5 HOH HOH B . F 3 HOH 3 204 6 HOH HOH B . F 3 HOH 4 205 9 HOH HOH B . F 3 HOH 5 206 10 HOH HOH B . F 3 HOH 6 207 11 HOH HOH B . F 3 HOH 7 208 13 HOH HOH B . F 3 HOH 8 209 14 HOH HOH B . F 3 HOH 9 210 15 HOH HOH B . F 3 HOH 10 211 17 HOH HOH B . F 3 HOH 11 212 18 HOH HOH B . F 3 HOH 12 213 19 HOH HOH B . F 3 HOH 13 214 22 HOH HOH B . F 3 HOH 14 215 23 HOH HOH B . F 3 HOH 15 216 25 HOH HOH B . F 3 HOH 16 217 27 HOH HOH B . F 3 HOH 17 218 28 HOH HOH B . F 3 HOH 18 219 30 HOH HOH B . F 3 HOH 19 220 34 HOH HOH B . F 3 HOH 20 221 35 HOH HOH B . F 3 HOH 21 222 38 HOH HOH B . F 3 HOH 22 223 43 HOH HOH B . F 3 HOH 23 224 46 HOH HOH B . F 3 HOH 24 225 47 HOH HOH B . F 3 HOH 25 226 48 HOH HOH B . F 3 HOH 26 227 51 HOH HOH B . F 3 HOH 27 228 52 HOH HOH B . F 3 HOH 28 229 53 HOH HOH B . F 3 HOH 29 230 54 HOH HOH B . F 3 HOH 30 231 56 HOH HOH B . F 3 HOH 31 232 57 HOH HOH B . F 3 HOH 32 233 60 HOH HOH B . F 3 HOH 33 234 61 HOH HOH B . F 3 HOH 34 235 62 HOH HOH B . F 3 HOH 35 236 64 HOH HOH B . F 3 HOH 36 237 67 HOH HOH B . F 3 HOH 37 238 68 HOH HOH B . F 3 HOH 38 239 72 HOH HOH B . F 3 HOH 39 240 74 HOH HOH B . F 3 HOH 40 241 75 HOH HOH B . F 3 HOH 41 242 76 HOH HOH B . F 3 HOH 42 243 78 HOH HOH B . F 3 HOH 43 244 79 HOH HOH B . F 3 HOH 44 245 80 HOH HOH B . F 3 HOH 45 246 81 HOH HOH B . F 3 HOH 46 247 82 HOH HOH B . F 3 HOH 47 248 83 HOH HOH B . F 3 HOH 48 249 90 HOH HOH B . F 3 HOH 49 250 94 HOH HOH B . F 3 HOH 50 251 98 HOH HOH B . F 3 HOH 51 252 99 HOH HOH B . F 3 HOH 52 253 100 HOH HOH B . F 3 HOH 53 254 101 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 44 ? A HIS 39 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 NA ? C HEM . ? A HEM 201 ? 1_555 92.5 ? 2 NE2 ? A HIS 44 ? A HIS 39 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 NB ? C HEM . ? A HEM 201 ? 1_555 94.4 ? 3 NA ? C HEM . ? A HEM 201 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 NB ? C HEM . ? A HEM 201 ? 1_555 89.9 ? 4 NE2 ? A HIS 44 ? A HIS 39 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 NC ? C HEM . ? A HEM 201 ? 1_555 88.1 ? 5 NA ? C HEM . ? A HEM 201 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 NC ? C HEM . ? A HEM 201 ? 1_555 178.8 ? 6 NB ? C HEM . ? A HEM 201 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 NC ? C HEM . ? A HEM 201 ? 1_555 89.1 ? 7 NE2 ? A HIS 44 ? A HIS 39 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 ND ? C HEM . ? A HEM 201 ? 1_555 84.9 ? 8 NA ? C HEM . ? A HEM 201 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 ND ? C HEM . ? A HEM 201 ? 1_555 91.4 ? 9 NB ? C HEM . ? A HEM 201 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 ND ? C HEM . ? A HEM 201 ? 1_555 178.5 ? 10 NC ? C HEM . ? A HEM 201 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 ND ? C HEM . ? A HEM 201 ? 1_555 89.6 ? 11 NE2 ? A HIS 44 ? A HIS 39 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 NE2 ? A HIS 68 ? A HIS 63 ? 1_555 170.6 ? 12 NA ? C HEM . ? A HEM 201 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 NE2 ? A HIS 68 ? A HIS 63 ? 1_555 94.8 ? 13 NB ? C HEM . ? A HEM 201 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 NE2 ? A HIS 68 ? A HIS 63 ? 1_555 91.6 ? 14 NC ? C HEM . ? A HEM 201 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 NE2 ? A HIS 68 ? A HIS 63 ? 1_555 84.7 ? 15 ND ? C HEM . ? A HEM 201 ? 1_555 FE ? C HEM . ? A HEM 201 ? 1_555 NE2 ? A HIS 68 ? A HIS 63 ? 1_555 89.0 ? 16 NE2 ? B HIS 44 ? B HIS 39 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 NA ? D HEM . ? B HEM 201 ? 1_555 90.4 ? 17 NE2 ? B HIS 44 ? B HIS 39 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 NB ? D HEM . ? B HEM 201 ? 1_555 88.3 ? 18 NA ? D HEM . ? B HEM 201 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 NB ? D HEM . ? B HEM 201 ? 1_555 90.2 ? 19 NE2 ? B HIS 44 ? B HIS 39 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 NC ? D HEM . ? B HEM 201 ? 1_555 90.5 ? 20 NA ? D HEM . ? B HEM 201 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 NC ? D HEM . ? B HEM 201 ? 1_555 179.0 ? 21 NB ? D HEM . ? B HEM 201 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 NC ? D HEM . ? B HEM 201 ? 1_555 89.3 ? 22 NE2 ? B HIS 44 ? B HIS 39 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 ND ? D HEM . ? B HEM 201 ? 1_555 91.3 ? 23 NA ? D HEM . ? B HEM 201 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 ND ? D HEM . ? B HEM 201 ? 1_555 90.9 ? 24 NB ? D HEM . ? B HEM 201 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 ND ? D HEM . ? B HEM 201 ? 1_555 178.8 ? 25 NC ? D HEM . ? B HEM 201 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 ND ? D HEM . ? B HEM 201 ? 1_555 89.6 ? 26 NE2 ? B HIS 44 ? B HIS 39 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 NE2 ? B HIS 68 ? B HIS 63 ? 1_555 174.6 ? 27 NA ? D HEM . ? B HEM 201 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 NE2 ? B HIS 68 ? B HIS 63 ? 1_555 95.0 ? 28 NB ? D HEM . ? B HEM 201 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 NE2 ? B HIS 68 ? B HIS 63 ? 1_555 91.7 ? 29 NC ? D HEM . ? B HEM 201 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 NE2 ? B HIS 68 ? B HIS 63 ? 1_555 84.1 ? 30 ND ? D HEM . ? B HEM 201 ? 1_555 FE ? D HEM . ? B HEM 201 ? 1_555 NE2 ? B HIS 68 ? B HIS 63 ? 1_555 88.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-10-28 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-03 5 'Structure model' 1 4 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 4 'Structure model' '_struct_ref_seq_dif.details' 17 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.851 ? 1 X-PLOR refinement 3.851 ? 2 SAINT 'data reduction' . ? 3 SAINT 'data scaling' . ? 4 X-PLOR phasing 3.851 ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 2 ? ? -57.89 -89.25 2 1 ALA A 3 ? ? -78.54 29.07 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP -4 ? A ASP 1 2 1 Y 1 A GLY -3 ? A GLY 2 3 1 Y 1 A GLN -2 ? A GLN 3 4 1 Y 1 A GLY -1 ? A GLY 4 5 1 Y 1 A SER 0 ? A SER 5 6 1 Y 1 A LYS 87 ? A LYS 92 7 1 Y 1 B ASP -4 ? B ASP 1 8 1 Y 1 B GLY -3 ? B GLY 2 9 1 Y 1 B GLN -2 ? B GLN 3 10 1 Y 1 B GLY -1 ? B GLY 4 11 1 Y 1 B SER 0 ? B SER 5 12 1 Y 1 B LYS 87 ? B LYS 92 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1B5M _pdbx_initial_refinement_model.details 'PDB ENTRY 1B5M' #