data_1AX6 # _entry.id 1AX6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AX6 pdb_00001ax6 10.2210/pdb1ax6/pdb WWPDB D_1000171364 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-07-01 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AX6 _pdbx_database_status.recvd_initial_deposition_date 1997-10-30 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mao, B.' 1 'Gorin, A.A.' 2 'Gu, Z.' 3 'Hingerty, B.E.' 4 'Broyde, S.' 5 'Patel, D.J.' 6 # _citation.id primary _citation.title ;Solution structure of the aminofluorene-intercalated conformer of the syn [AF]-C8-dG adduct opposite a--2 deletion site in the NarI hot spot sequence context. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 36 _citation.page_first 14479 _citation.page_last 14490 _citation.year 1997 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9398167 _citation.pdbx_database_id_DOI 10.1021/bi972205z # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mao, B.' 1 ? primary 'Gorin, A.' 2 ? primary 'Gu, Z.' 3 ? primary 'Hingerty, B.E.' 4 ? primary 'Broyde, S.' 5 ? primary 'Patel, D.J.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA DUPLEX D(CTCGGC-[AF]G-CCATC)D(GATGGCCGAG)' 3599.343 1 ? ? ? 'N ATOM OF AF-GROUP LINKED TO C8 ATOM OF DG7' 2 polymer syn 'DNA DUPLEX D(CTCGGC-[AF]G-CCATC)D(GATGGCCGAG)' 3110.041 1 ? ? ? 'N ATOM OF AF-GROUP LINKED TO C8 ATOM OF DG7' 3 non-polymer syn 2-AMINOFLUORENE 181.233 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DT)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DA)(DT)(DC)' CTCGGCGCCATC A ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DT)(DG)(DG)(DC)(DC)(DG)(DA)(DG)' GATGGCCGAG B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 2-AMINOFLUORENE _pdbx_entity_nonpoly.comp_id AF # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DC n 1 4 DG n 1 5 DG n 1 6 DC n 1 7 DG n 1 8 DC n 1 9 DC n 1 10 DA n 1 11 DT n 1 12 DC n 2 1 DG n 2 2 DA n 2 3 DT n 2 4 DG n 2 5 DG n 2 6 DC n 2 7 DC n 2 8 DG n 2 9 DA n 2 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AF non-polymer . 2-AMINOFLUORENE ? 'C13 H11 N' 181.233 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DA 10 10 10 DA A A . n A 1 11 DT 11 11 11 DT T A . n A 1 12 DC 12 12 12 DC C A . n B 2 1 DG 1 13 13 DG G B . n B 2 2 DA 2 14 14 DA A B . n B 2 3 DT 3 15 15 DT T B . n B 2 4 DG 4 16 16 DG G B . n B 2 5 DG 5 17 17 DG G B . n B 2 6 DC 6 18 18 DC C B . n B 2 7 DC 7 19 19 DC C B . n B 2 8 DG 8 20 20 DG G B . n B 2 9 DA 9 21 21 DA A B . n B 2 10 DG 10 22 22 DG G B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id AF _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 23 _pdbx_nonpoly_scheme.auth_seq_num 23 _pdbx_nonpoly_scheme.pdb_mon_id AF _pdbx_nonpoly_scheme.auth_mon_id AF _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # _cell.entry_id 1AX6 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AX6 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1AX6 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1AX6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1AX6 _struct.title 'SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT OPPOSITE A-2 DELETION SITE IN THE NARI HOT SPOT SEQUENCE CONTEXT; NMR, 6 STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AX6 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA DUPLEX, AMINOFLUORENE ADDUCT, CARCINOGEN ADDUCT, HOT SPOT SEQUENCE, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1AX6 1AX6 ? ? ? 2 2 PDB 1AX6 1AX6 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AX6 A 1 ? 12 ? 1AX6 1 ? 12 ? 1 12 2 2 1AX6 B 1 ? 10 ? 1AX6 13 ? 22 ? 13 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DG 7 C8 ? ? ? 1_555 C AF . N ? ? A DG 7 A AF 23 1_555 ? ? ? ? ? ? ? 1.479 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 2 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 2 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 3 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 3 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 3 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 5 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 5 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 5 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 8 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 8 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 8 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 10 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 10 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 11 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 11 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id AF _struct_site.pdbx_auth_seq_id 23 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE AF A 23' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 5 ? DG A 5 . ? 1_555 ? 2 AC1 6 DC A 6 ? DC A 6 . ? 1_555 ? 3 AC1 6 DG A 7 ? DG A 7 . ? 1_555 ? 4 AC1 6 DC A 8 ? DC A 8 . ? 1_555 ? 5 AC1 6 DG B 5 ? DG B 17 . ? 1_555 ? 6 AC1 6 DC B 6 ? DC B 18 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 H3 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DT _pdbx_validate_close_contact.auth_seq_id_1 11 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N1 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 DA _pdbx_validate_close_contact.auth_seq_id_2 14 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DT 2 ? ? C7 A DT 2 ? ? 1.534 1.496 0.038 0.006 N 2 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.570 1.512 0.058 0.007 N 3 1 C5 A DT 11 ? ? C7 A DT 11 ? ? 1.535 1.496 0.039 0.006 N 4 1 C5 B DT 15 ? ? C7 B DT 15 ? ? 1.535 1.496 0.039 0.006 N 5 1 "C5'" B DG 17 ? ? "C4'" B DG 17 ? ? 1.557 1.512 0.045 0.007 N 6 2 C5 A DT 2 ? ? C7 A DT 2 ? ? 1.534 1.496 0.038 0.006 N 7 3 C5 A DT 2 ? ? C7 A DT 2 ? ? 1.537 1.496 0.041 0.006 N 8 3 C5 A DT 11 ? ? C7 A DT 11 ? ? 1.537 1.496 0.041 0.006 N 9 3 C5 B DT 15 ? ? C7 B DT 15 ? ? 1.536 1.496 0.040 0.006 N 10 4 C5 A DT 2 ? ? C7 A DT 2 ? ? 1.534 1.496 0.038 0.006 N 11 4 "C5'" A DC 6 ? ? "C4'" A DC 6 ? ? 1.560 1.512 0.048 0.007 N 12 5 C5 A DT 2 ? ? C7 A DT 2 ? ? 1.539 1.496 0.043 0.006 N 13 5 "C5'" A DT 11 ? ? "C4'" A DT 11 ? ? 1.571 1.512 0.059 0.007 N 14 5 C5 A DT 11 ? ? C7 A DT 11 ? ? 1.536 1.496 0.040 0.006 N 15 6 C5 A DT 2 ? ? C7 A DT 2 ? ? 1.533 1.496 0.037 0.006 N 16 6 "C5'" A DG 5 ? ? "C4'" A DG 5 ? ? 1.565 1.512 0.053 0.007 N 17 6 C5 A DT 11 ? ? C7 A DT 11 ? ? 1.538 1.496 0.042 0.006 N 18 6 C5 B DT 15 ? ? C7 B DT 15 ? ? 1.536 1.496 0.040 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? "C2'" A DT 2 ? ? 99.23 105.90 -6.67 0.80 N 2 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 102.40 108.00 -5.60 0.70 N 3 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 95.36 102.20 -6.84 0.70 N 4 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 100.69 105.90 -5.21 0.80 N 5 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 116.17 108.30 7.87 0.30 N 6 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DG 5 ? ? 132.18 119.70 12.48 1.20 Y 7 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? "C2'" A DG 5 ? ? 99.23 105.90 -6.67 0.80 N 8 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.82 108.30 2.52 0.30 N 9 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 102.34 108.00 -5.66 0.70 N 10 1 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.23 122.90 -3.67 0.60 N 11 1 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 101.83 108.00 -6.17 0.70 N 12 1 N1 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 122.97 118.90 4.07 0.60 N 13 1 "C4'" B DT 15 ? ? "C3'" B DT 15 ? ? "C2'" B DT 15 ? ? 97.84 102.20 -4.36 0.70 N 14 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? "C2'" B DT 15 ? ? 97.28 105.90 -8.62 0.80 N 15 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 122.86 108.30 14.56 0.30 N 16 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 112.43 108.30 4.13 0.30 N 17 1 "C4'" B DG 17 ? ? "C3'" B DG 17 ? ? "C2'" B DG 17 ? ? 97.68 102.20 -4.52 0.70 N 18 1 N9 B DG 17 ? ? "C1'" B DG 17 ? ? "C2'" B DG 17 ? ? 125.00 114.30 10.70 1.40 N 19 1 "C3'" B DG 17 ? ? "O3'" B DG 17 ? ? P B DC 18 ? ? 129.48 119.70 9.78 1.20 Y 20 1 "C3'" B DC 18 ? ? "C2'" B DC 18 ? ? "C1'" B DC 18 ? ? 97.31 102.40 -5.09 0.80 N 21 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 103.16 108.00 -4.84 0.70 N 22 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 102.91 108.00 -5.09 0.70 N 23 1 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 103.30 108.00 -4.70 0.70 N 24 2 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.65 102.20 -4.55 0.70 N 25 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.78 108.30 2.48 0.30 N 26 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? "C2'" A DT 2 ? ? 99.68 105.90 -6.22 0.80 N 27 2 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 100.42 108.00 -7.58 0.70 N 28 2 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 96.82 102.20 -5.38 0.70 N 29 2 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 100.23 105.90 -5.67 0.80 N 30 2 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.88 108.30 4.58 0.30 N 31 2 P A DG 5 ? ? "O5'" A DG 5 ? ? "C5'" A DG 5 ? ? 132.43 120.90 11.53 1.60 N 32 2 "C1'" A DG 5 ? ? "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? 102.63 110.10 -7.47 1.00 N 33 2 "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? 124.79 112.30 12.49 2.00 N 34 2 N9 A DG 7 ? ? "C1'" A DG 7 ? ? "C2'" A DG 7 ? ? 123.29 114.30 8.99 1.40 N 35 2 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 102.59 108.00 -5.41 0.70 N 36 2 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.06 122.90 -3.84 0.60 N 37 2 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? "C2'" B DG 13 ? ? 99.23 105.90 -6.67 0.80 N 38 2 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? "C2'" B DA 14 ? ? 99.69 105.90 -6.21 0.80 N 39 2 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? "C2'" B DT 15 ? ? 98.41 105.90 -7.49 0.80 N 40 2 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 113.64 108.30 5.34 0.30 N 41 2 "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? 96.43 102.20 -5.77 0.70 N 42 2 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.03 108.30 2.73 0.30 N 43 2 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 111.41 108.30 3.11 0.30 N 44 2 "C1'" B DC 18 ? ? "O4'" B DC 18 ? ? "C4'" B DC 18 ? ? 103.11 110.10 -6.99 1.00 N 45 2 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? "C2'" B DC 18 ? ? 101.02 105.90 -4.88 0.80 N 46 2 "C3'" B DC 18 ? ? "O3'" B DC 18 ? ? P B DC 19 ? ? 127.52 119.70 7.82 1.20 Y 47 2 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? "C2'" B DG 20 ? ? 99.01 105.90 -6.89 0.80 N 48 2 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 99.60 108.00 -8.40 0.70 N 49 2 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? "C2'" B DG 22 ? ? 100.06 105.90 -5.84 0.80 N 50 2 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.42 108.30 2.12 0.30 N 51 3 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.24 102.20 -4.96 0.70 N 52 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 100.54 105.90 -5.36 0.80 N 53 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.10 108.30 4.80 0.30 N 54 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.38 108.30 2.08 0.30 N 55 3 C5 A DT 2 ? ? C4 A DT 2 ? ? O4 A DT 2 ? ? 129.53 124.90 4.63 0.70 N 56 3 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 118.90 122.90 -4.00 0.60 N 57 3 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 101.65 108.00 -6.35 0.70 N 58 3 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 96.14 102.20 -6.06 0.70 N 59 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 99.86 105.90 -6.04 0.80 N 60 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.23 108.30 3.93 0.30 N 61 3 "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 100.81 104.50 -3.69 0.40 N 62 3 "C1'" A DG 5 ? ? "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? 103.01 110.10 -7.09 1.00 N 63 3 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 102.12 108.00 -5.88 0.70 N 64 3 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.50 108.30 3.20 0.30 N 65 3 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 102.58 108.00 -5.42 0.70 N 66 3 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.18 108.30 1.88 0.30 N 67 3 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 103.63 108.00 -4.37 0.70 N 68 3 "C1'" B DT 15 ? ? "O4'" B DT 15 ? ? "C4'" B DT 15 ? ? 103.17 110.10 -6.93 1.00 N 69 3 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 113.66 108.30 5.36 0.30 N 70 3 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? "C2'" B DC 19 ? ? 97.24 105.90 -8.66 0.80 N 71 3 "C3'" B DG 20 ? ? "C2'" B DG 20 ? ? "C1'" B DG 20 ? ? 95.68 102.40 -6.72 0.80 N 72 3 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 110.42 108.30 2.12 0.30 N 73 3 "C3'" B DG 20 ? ? "O3'" B DG 20 ? ? P B DA 21 ? ? 127.29 119.70 7.59 1.20 Y 74 3 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 103.41 108.00 -4.59 0.70 N 75 4 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.16 102.20 -5.04 0.70 N 76 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.95 108.30 3.65 0.30 N 77 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 113.97 108.30 5.67 0.30 N 78 4 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 100.13 108.00 -7.87 0.70 N 79 4 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.63 118.90 3.73 0.60 N 80 4 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 96.49 102.20 -5.71 0.70 N 81 4 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 115.11 108.30 6.81 0.30 N 82 4 "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 101.21 104.50 -3.29 0.40 N 83 4 P A DC 6 ? ? "O5'" A DC 6 ? ? "C5'" A DC 6 ? ? 131.48 120.90 10.58 1.60 N 84 4 "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? 100.71 104.50 -3.79 0.40 N 85 4 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.14 108.30 2.84 0.30 N 86 4 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? "C2'" A DC 9 ? ? 97.32 105.90 -8.58 0.80 N 87 4 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.88 108.30 2.58 0.30 N 88 4 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 99.81 105.90 -6.09 0.80 N 89 4 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 102.32 108.00 -5.68 0.70 N 90 4 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 117.44 122.90 -5.46 0.60 N 91 4 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? "C1'" B DG 13 ? ? 97.46 102.40 -4.94 0.80 N 92 4 "C4'" B DT 15 ? ? "C3'" B DT 15 ? ? "C2'" B DT 15 ? ? 97.03 102.20 -5.17 0.70 N 93 4 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? "C2'" B DT 15 ? ? 97.79 105.90 -8.11 0.80 N 94 4 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 123.86 108.30 15.56 0.30 N 95 4 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 118.08 122.90 -4.82 0.60 N 96 4 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.83 108.30 3.53 0.30 N 97 4 "O4'" B DG 17 ? ? "C4'" B DG 17 ? ? "C3'" B DG 17 ? ? 100.76 104.50 -3.74 0.40 N 98 4 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 113.94 108.30 5.64 0.30 N 99 4 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? "C2'" B DC 18 ? ? 98.96 105.90 -6.94 0.80 N 100 4 "C3'" B DG 20 ? ? "C2'" B DG 20 ? ? "C1'" B DG 20 ? ? 96.75 102.40 -5.65 0.80 N 101 4 "C3'" B DG 20 ? ? "O3'" B DG 20 ? ? P B DA 21 ? ? 127.61 119.70 7.91 1.20 Y 102 5 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.46 102.20 -4.74 0.70 N 103 5 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 95.79 108.00 -12.21 0.70 N 104 5 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? ? 128.46 119.70 8.76 1.20 Y 105 5 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 96.66 102.20 -5.54 0.70 N 106 5 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 117.17 108.30 8.87 0.30 N 107 5 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 103.36 108.00 -4.64 0.70 N 108 5 "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? 101.78 104.50 -2.72 0.40 N 109 5 "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? "C2'" A DC 6 ? ? 97.99 102.20 -4.21 0.70 N 110 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.75 108.30 2.45 0.30 N 111 5 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DG 7 ? ? 129.43 119.70 9.73 1.20 Y 112 5 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.96 108.30 3.66 0.30 N 113 5 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? "C2'" A DC 9 ? ? 100.84 105.90 -5.06 0.80 N 114 5 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 102.26 108.00 -5.74 0.70 N 115 5 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 100.41 105.90 -5.49 0.80 N 116 5 "C5'" A DT 11 ? ? "C4'" A DT 11 ? ? "C3'" A DT 11 ? ? 125.50 115.70 9.80 1.20 N 117 5 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? "C1'" B DG 13 ? ? 96.83 102.40 -5.57 0.80 N 118 5 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 111.16 108.30 2.86 0.30 N 119 5 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? "C2'" B DT 15 ? ? 100.59 105.90 -5.31 0.80 N 120 5 "O4'" B DG 17 ? ? "C4'" B DG 17 ? ? "C3'" B DG 17 ? ? 101.82 104.50 -2.68 0.40 N 121 5 "C3'" B DC 18 ? ? "C2'" B DC 18 ? ? "C1'" B DC 18 ? ? 97.31 102.40 -5.09 0.80 N 122 5 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? "C2'" B DC 18 ? ? 100.01 105.90 -5.89 0.80 N 123 5 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 115.28 108.30 6.98 0.30 N 124 5 N1 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 122.63 118.90 3.73 0.60 N 125 5 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? "C2'" B DG 20 ? ? 98.72 105.90 -7.18 0.80 N 126 5 "C3'" B DA 21 ? ? "O3'" B DA 21 ? ? P B DG 22 ? ? 127.66 119.70 7.96 1.20 Y 127 6 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.71 102.20 -4.49 0.70 N 128 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.15 108.30 1.85 0.30 N 129 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.52 108.30 2.22 0.30 N 130 6 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 118.26 122.90 -4.64 0.60 N 131 6 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 96.69 108.00 -11.31 0.70 N 132 6 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 96.03 102.20 -6.17 0.70 N 133 6 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 99.74 105.90 -6.16 0.80 N 134 6 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 117.54 108.30 9.24 0.30 N 135 6 "C5'" A DG 5 ? ? "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 125.01 115.70 9.31 1.20 N 136 6 "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? "C2'" A DG 5 ? ? 97.00 102.20 -5.20 0.70 N 137 6 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DC 6 ? ? 128.00 119.70 8.30 1.20 Y 138 6 "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? "C2'" A DG 7 ? ? 97.76 102.20 -4.44 0.70 N 139 6 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.91 108.30 3.61 0.30 N 140 6 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 101.40 108.00 -6.60 0.70 N 141 6 N1 A DC 8 ? ? C2 A DC 8 ? ? O2 A DC 8 ? ? 122.62 118.90 3.72 0.60 N 142 6 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.53 108.30 2.23 0.30 N 143 6 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 103.42 108.00 -4.58 0.70 N 144 6 "C1'" B DT 15 ? ? "O4'" B DT 15 ? ? "C4'" B DT 15 ? ? 101.59 110.10 -8.51 1.00 N 145 6 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 113.65 108.30 5.35 0.30 N 146 6 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DG 17 ? ? 127.21 119.70 7.51 1.20 Y 147 6 N9 B DG 17 ? ? "C1'" B DG 17 ? ? "C2'" B DG 17 ? ? 122.86 114.30 8.56 1.40 N 148 6 "C3'" B DC 18 ? ? "C2'" B DC 18 ? ? "C1'" B DC 18 ? ? 97.10 102.40 -5.30 0.80 N 149 6 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? "C2'" B DC 18 ? ? 99.43 105.90 -6.47 0.80 N 150 6 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.76 108.30 3.46 0.30 N 151 6 "C1'" B DG 20 ? ? "O4'" B DG 20 ? ? "C4'" B DG 20 ? ? 102.01 110.10 -8.09 1.00 N 152 6 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 113.59 108.30 5.29 0.30 N 153 6 N9 B DG 20 ? ? C4 B DG 20 ? ? C5 B DG 20 ? ? 107.83 105.40 2.43 0.40 N 154 6 "C3'" B DG 20 ? ? "O3'" B DG 20 ? ? P B DA 21 ? ? 130.00 119.70 10.30 1.20 Y 155 6 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 97.18 102.40 -5.22 0.80 N # _pdbx_nmr_ensemble.entry_id 1AX6 _pdbx_nmr_ensemble.conformers_calculated_total_number 6 _pdbx_nmr_ensemble.conformers_submitted_total_number 6 _pdbx_nmr_ensemble.conformer_selection_criteria 'ALL CONFORMERS PRESENTED' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 322 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 3 1 TOCSY 1 # _pdbx_nmr_refine.entry_id 1AX6 _pdbx_nmr_refine.method 'RELAXATION MATRIX REFINEMENT' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' VNMR ? ? 2 'structure solution' DUPLEX ? ? 3 'structure solution' X-PLOR ? ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AF N N N N 1 AF C2 C Y N 2 AF C3 C Y N 3 AF C4 C Y N 4 AF C4A C Y N 5 AF C4B C Y N 6 AF C5 C Y N 7 AF C6 C Y N 8 AF C7 C Y N 9 AF C8 C Y N 10 AF C8A C Y N 11 AF C9 C N N 12 AF C9A C Y N 13 AF C1 C Y N 14 AF HN1 H N N 15 AF HN2 H N N 16 AF H3 H N N 17 AF H4 H N N 18 AF H5 H N N 19 AF H6 H N N 20 AF H7 H N N 21 AF H8 H N N 22 AF H91 H N N 23 AF H92 H N N 24 AF H1 H N N 25 DA OP3 O N N 26 DA P P N N 27 DA OP1 O N N 28 DA OP2 O N N 29 DA "O5'" O N N 30 DA "C5'" C N N 31 DA "C4'" C N R 32 DA "O4'" O N N 33 DA "C3'" C N S 34 DA "O3'" O N N 35 DA "C2'" C N N 36 DA "C1'" C N R 37 DA N9 N Y N 38 DA C8 C Y N 39 DA N7 N Y N 40 DA C5 C Y N 41 DA C6 C Y N 42 DA N6 N N N 43 DA N1 N Y N 44 DA C2 C Y N 45 DA N3 N Y N 46 DA C4 C Y N 47 DA HOP3 H N N 48 DA HOP2 H N N 49 DA "H5'" H N N 50 DA "H5''" H N N 51 DA "H4'" H N N 52 DA "H3'" H N N 53 DA "HO3'" H N N 54 DA "H2'" H N N 55 DA "H2''" H N N 56 DA "H1'" H N N 57 DA H8 H N N 58 DA H61 H N N 59 DA H62 H N N 60 DA H2 H N N 61 DC OP3 O N N 62 DC P P N N 63 DC OP1 O N N 64 DC OP2 O N N 65 DC "O5'" O N N 66 DC "C5'" C N N 67 DC "C4'" C N R 68 DC "O4'" O N N 69 DC "C3'" C N S 70 DC "O3'" O N N 71 DC "C2'" C N N 72 DC "C1'" C N R 73 DC N1 N N N 74 DC C2 C N N 75 DC O2 O N N 76 DC N3 N N N 77 DC C4 C N N 78 DC N4 N N N 79 DC C5 C N N 80 DC C6 C N N 81 DC HOP3 H N N 82 DC HOP2 H N N 83 DC "H5'" H N N 84 DC "H5''" H N N 85 DC "H4'" H N N 86 DC "H3'" H N N 87 DC "HO3'" H N N 88 DC "H2'" H N N 89 DC "H2''" H N N 90 DC "H1'" H N N 91 DC H41 H N N 92 DC H42 H N N 93 DC H5 H N N 94 DC H6 H N N 95 DG OP3 O N N 96 DG P P N N 97 DG OP1 O N N 98 DG OP2 O N N 99 DG "O5'" O N N 100 DG "C5'" C N N 101 DG "C4'" C N R 102 DG "O4'" O N N 103 DG "C3'" C N S 104 DG "O3'" O N N 105 DG "C2'" C N N 106 DG "C1'" C N R 107 DG N9 N Y N 108 DG C8 C Y N 109 DG N7 N Y N 110 DG C5 C Y N 111 DG C6 C N N 112 DG O6 O N N 113 DG N1 N N N 114 DG C2 C N N 115 DG N2 N N N 116 DG N3 N N N 117 DG C4 C Y N 118 DG HOP3 H N N 119 DG HOP2 H N N 120 DG "H5'" H N N 121 DG "H5''" H N N 122 DG "H4'" H N N 123 DG "H3'" H N N 124 DG "HO3'" H N N 125 DG "H2'" H N N 126 DG "H2''" H N N 127 DG "H1'" H N N 128 DG H8 H N N 129 DG H1 H N N 130 DG H21 H N N 131 DG H22 H N N 132 DT OP3 O N N 133 DT P P N N 134 DT OP1 O N N 135 DT OP2 O N N 136 DT "O5'" O N N 137 DT "C5'" C N N 138 DT "C4'" C N R 139 DT "O4'" O N N 140 DT "C3'" C N S 141 DT "O3'" O N N 142 DT "C2'" C N N 143 DT "C1'" C N R 144 DT N1 N N N 145 DT C2 C N N 146 DT O2 O N N 147 DT N3 N N N 148 DT C4 C N N 149 DT O4 O N N 150 DT C5 C N N 151 DT C7 C N N 152 DT C6 C N N 153 DT HOP3 H N N 154 DT HOP2 H N N 155 DT "H5'" H N N 156 DT "H5''" H N N 157 DT "H4'" H N N 158 DT "H3'" H N N 159 DT "HO3'" H N N 160 DT "H2'" H N N 161 DT "H2''" H N N 162 DT "H1'" H N N 163 DT H3 H N N 164 DT H71 H N N 165 DT H72 H N N 166 DT H73 H N N 167 DT H6 H N N 168 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AF N C2 sing N N 1 AF N HN1 sing N N 2 AF N HN2 sing N N 3 AF C2 C3 doub Y N 4 AF C2 C1 sing Y N 5 AF C3 C4 sing Y N 6 AF C3 H3 sing N N 7 AF C4 C4A doub Y N 8 AF C4 H4 sing N N 9 AF C4A C4B sing Y N 10 AF C4A C9A sing Y N 11 AF C4B C5 doub Y N 12 AF C4B C8A sing Y N 13 AF C5 C6 sing Y N 14 AF C5 H5 sing N N 15 AF C6 C7 doub Y N 16 AF C6 H6 sing N N 17 AF C7 C8 sing Y N 18 AF C7 H7 sing N N 19 AF C8 C8A doub Y N 20 AF C8 H8 sing N N 21 AF C8A C9 sing N N 22 AF C9 C9A sing N N 23 AF C9 H91 sing N N 24 AF C9 H92 sing N N 25 AF C9A C1 doub Y N 26 AF C1 H1 sing N N 27 DA OP3 P sing N N 28 DA OP3 HOP3 sing N N 29 DA P OP1 doub N N 30 DA P OP2 sing N N 31 DA P "O5'" sing N N 32 DA OP2 HOP2 sing N N 33 DA "O5'" "C5'" sing N N 34 DA "C5'" "C4'" sing N N 35 DA "C5'" "H5'" sing N N 36 DA "C5'" "H5''" sing N N 37 DA "C4'" "O4'" sing N N 38 DA "C4'" "C3'" sing N N 39 DA "C4'" "H4'" sing N N 40 DA "O4'" "C1'" sing N N 41 DA "C3'" "O3'" sing N N 42 DA "C3'" "C2'" sing N N 43 DA "C3'" "H3'" sing N N 44 DA "O3'" "HO3'" sing N N 45 DA "C2'" "C1'" sing N N 46 DA "C2'" "H2'" sing N N 47 DA "C2'" "H2''" sing N N 48 DA "C1'" N9 sing N N 49 DA "C1'" "H1'" sing N N 50 DA N9 C8 sing Y N 51 DA N9 C4 sing Y N 52 DA C8 N7 doub Y N 53 DA C8 H8 sing N N 54 DA N7 C5 sing Y N 55 DA C5 C6 sing Y N 56 DA C5 C4 doub Y N 57 DA C6 N6 sing N N 58 DA C6 N1 doub Y N 59 DA N6 H61 sing N N 60 DA N6 H62 sing N N 61 DA N1 C2 sing Y N 62 DA C2 N3 doub Y N 63 DA C2 H2 sing N N 64 DA N3 C4 sing Y N 65 DC OP3 P sing N N 66 DC OP3 HOP3 sing N N 67 DC P OP1 doub N N 68 DC P OP2 sing N N 69 DC P "O5'" sing N N 70 DC OP2 HOP2 sing N N 71 DC "O5'" "C5'" sing N N 72 DC "C5'" "C4'" sing N N 73 DC "C5'" "H5'" sing N N 74 DC "C5'" "H5''" sing N N 75 DC "C4'" "O4'" sing N N 76 DC "C4'" "C3'" sing N N 77 DC "C4'" "H4'" sing N N 78 DC "O4'" "C1'" sing N N 79 DC "C3'" "O3'" sing N N 80 DC "C3'" "C2'" sing N N 81 DC "C3'" "H3'" sing N N 82 DC "O3'" "HO3'" sing N N 83 DC "C2'" "C1'" sing N N 84 DC "C2'" "H2'" sing N N 85 DC "C2'" "H2''" sing N N 86 DC "C1'" N1 sing N N 87 DC "C1'" "H1'" sing N N 88 DC N1 C2 sing N N 89 DC N1 C6 sing N N 90 DC C2 O2 doub N N 91 DC C2 N3 sing N N 92 DC N3 C4 doub N N 93 DC C4 N4 sing N N 94 DC C4 C5 sing N N 95 DC N4 H41 sing N N 96 DC N4 H42 sing N N 97 DC C5 C6 doub N N 98 DC C5 H5 sing N N 99 DC C6 H6 sing N N 100 DG OP3 P sing N N 101 DG OP3 HOP3 sing N N 102 DG P OP1 doub N N 103 DG P OP2 sing N N 104 DG P "O5'" sing N N 105 DG OP2 HOP2 sing N N 106 DG "O5'" "C5'" sing N N 107 DG "C5'" "C4'" sing N N 108 DG "C5'" "H5'" sing N N 109 DG "C5'" "H5''" sing N N 110 DG "C4'" "O4'" sing N N 111 DG "C4'" "C3'" sing N N 112 DG "C4'" "H4'" sing N N 113 DG "O4'" "C1'" sing N N 114 DG "C3'" "O3'" sing N N 115 DG "C3'" "C2'" sing N N 116 DG "C3'" "H3'" sing N N 117 DG "O3'" "HO3'" sing N N 118 DG "C2'" "C1'" sing N N 119 DG "C2'" "H2'" sing N N 120 DG "C2'" "H2''" sing N N 121 DG "C1'" N9 sing N N 122 DG "C1'" "H1'" sing N N 123 DG N9 C8 sing Y N 124 DG N9 C4 sing Y N 125 DG C8 N7 doub Y N 126 DG C8 H8 sing N N 127 DG N7 C5 sing Y N 128 DG C5 C6 sing N N 129 DG C5 C4 doub Y N 130 DG C6 O6 doub N N 131 DG C6 N1 sing N N 132 DG N1 C2 sing N N 133 DG N1 H1 sing N N 134 DG C2 N2 sing N N 135 DG C2 N3 doub N N 136 DG N2 H21 sing N N 137 DG N2 H22 sing N N 138 DG N3 C4 sing N N 139 DT OP3 P sing N N 140 DT OP3 HOP3 sing N N 141 DT P OP1 doub N N 142 DT P OP2 sing N N 143 DT P "O5'" sing N N 144 DT OP2 HOP2 sing N N 145 DT "O5'" "C5'" sing N N 146 DT "C5'" "C4'" sing N N 147 DT "C5'" "H5'" sing N N 148 DT "C5'" "H5''" sing N N 149 DT "C4'" "O4'" sing N N 150 DT "C4'" "C3'" sing N N 151 DT "C4'" "H4'" sing N N 152 DT "O4'" "C1'" sing N N 153 DT "C3'" "O3'" sing N N 154 DT "C3'" "C2'" sing N N 155 DT "C3'" "H3'" sing N N 156 DT "O3'" "HO3'" sing N N 157 DT "C2'" "C1'" sing N N 158 DT "C2'" "H2'" sing N N 159 DT "C2'" "H2''" sing N N 160 DT "C1'" N1 sing N N 161 DT "C1'" "H1'" sing N N 162 DT N1 C2 sing N N 163 DT N1 C6 sing N N 164 DT C2 O2 doub N N 165 DT C2 N3 sing N N 166 DT N3 C4 sing N N 167 DT N3 H3 sing N N 168 DT C4 O4 doub N N 169 DT C4 C5 sing N N 170 DT C5 C7 sing N N 171 DT C5 C6 doub N N 172 DT C7 H71 sing N N 173 DT C7 H72 sing N N 174 DT C7 H73 sing N N 175 DT C6 H6 sing N N 176 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1AX6 'double helix' 1AX6 'b-form double helix' 1AX6 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.440 -0.142 -0.561 15.556 -9.159 2.148 1 A_DC1:DG22_B A 1 ? B 22 ? 19 1 1 A DT 2 1_555 B DA 9 1_555 -0.413 -0.134 0.075 -3.511 -13.715 -2.449 2 A_DT2:DA21_B A 2 ? B 21 ? 20 1 1 A DC 3 1_555 B DG 8 1_555 1.132 -0.455 0.509 -14.063 -1.414 0.318 3 A_DC3:DG20_B A 3 ? B 20 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.716 -0.472 0.741 12.300 -26.007 -2.664 4 A_DG4:DC19_B A 4 ? B 19 ? 19 1 1 A DG 5 1_555 B DC 6 1_555 -0.306 -0.238 0.367 -3.738 17.056 3.544 5 A_DG5:DC18_B A 5 ? B 18 ? 19 1 1 A DC 8 1_555 B DG 5 1_555 1.159 -0.438 -0.501 21.430 -26.958 3.444 6 A_DC8:DG17_B A 8 ? B 17 ? 19 1 1 A DC 9 1_555 B DG 4 1_555 1.059 -0.211 0.484 -29.951 0.801 2.112 7 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DA 10 1_555 B DT 3 1_555 -0.028 -0.141 0.003 -14.790 -17.769 1.060 8 A_DA10:DT15_B A 10 ? B 15 ? 20 1 1 A DT 11 1_555 B DA 2 1_555 -0.042 -0.323 0.278 1.081 -13.360 6.663 9 A_DT11:DA14_B A 11 ? B 14 ? 20 1 1 A DC 12 1_555 B DG 1 1_555 1.042 -0.369 0.480 -4.647 -12.529 1.838 10 A_DC12:DG13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DT 2 1_555 B DA 9 1_555 -0.152 0.985 4.134 -2.148 29.558 20.719 -4.501 -0.197 3.212 55.648 4.044 36.027 1 AA_DC1DT2:DA21DG22_BB A 1 ? B 22 ? A 2 ? B 21 ? 1 A DT 2 1_555 B DA 9 1_555 A DC 3 1_555 B DG 8 1_555 -0.038 1.795 3.754 -2.426 18.195 42.100 0.303 -0.218 4.151 24.007 3.201 45.761 2 AA_DT2DC3:DG20DA21_BB A 2 ? B 21 ? A 3 ? B 20 ? 1 A DC 3 1_555 B DG 8 1_555 A DG 4 1_555 B DC 7 1_555 0.382 -0.173 2.437 3.854 3.758 20.526 -1.639 0.160 2.397 10.318 -10.582 21.213 3 AA_DC3DG4:DC19DG20_BB A 3 ? B 20 ? A 4 ? B 19 ? 1 A DG 4 1_555 B DC 7 1_555 A DG 5 1_555 B DC 6 1_555 1.402 -0.274 4.035 1.985 -30.305 45.309 2.114 -1.384 3.612 -35.095 -2.299 54.097 4 AA_DG4DG5:DC18DC19_BB A 4 ? B 19 ? A 5 ? B 18 ? 1 A DG 5 1_555 B DC 6 1_555 A DC 8 1_555 B DG 5 1_555 -0.658 1.773 5.062 25.064 34.166 33.399 -1.857 3.539 4.034 43.096 -31.615 53.473 5 AA_DG5DC8:DG17DC18_BB A 5 ? B 18 ? A 8 ? B 17 ? 1 A DC 8 1_555 B DG 5 1_555 A DC 9 1_555 B DG 4 1_555 1.017 0.951 4.304 11.284 14.780 55.944 -0.093 -0.225 4.517 15.294 -11.676 58.716 6 AA_DC8DC9:DG16DG17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DA 10 1_555 B DT 3 1_555 0.684 -0.938 2.586 7.408 10.983 30.495 -3.059 -0.242 2.227 19.751 -13.323 33.186 7 AA_DC9DA10:DT15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DA 10 1_555 B DT 3 1_555 A DT 11 1_555 B DA 2 1_555 0.410 -0.388 2.714 -1.906 -5.527 26.657 0.333 -1.268 2.702 -11.807 4.072 27.280 8 AA_DA10DT11:DA14DT15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DT 11 1_555 B DA 2 1_555 A DC 12 1_555 B DG 1 1_555 -0.680 -0.033 3.253 1.026 11.906 44.581 -1.058 0.957 3.131 15.369 -1.325 46.076 9 AA_DT11DC12:DG13DA14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 'VARIAN UNITY PLUS' Varian 500 2 'VARIAN UNITY PLUS' Varian 600 # _atom_sites.entry_id 1AX6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_