data_1AXO # _entry.id 1AXO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AXO pdb_00001axo 10.2210/pdb1axo/pdb WWPDB D_1000171382 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-07-01 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AXO _pdbx_database_status.recvd_initial_deposition_date 1997-10-16 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Feng, B.' 1 'Gorin, A.A.' 2 'Hingerty, B.E.' 3 'Geacintov, N.E.' 4 'Broyde, S.' 5 'Patel, D.J.' 6 # _citation.id primary _citation.title 'Structural alignment of the (+)-trans-anti-benzo[a]pyrene-dG adduct positioned opposite dC at a DNA template-primer junction.' _citation.journal_abbrev Biochemistry _citation.journal_volume 36 _citation.page_first 13769 _citation.page_last 13779 _citation.year 1997 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9374853 _citation.pdbx_database_id_DOI 10.1021/bi970069s # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Feng, B.' 1 ? primary 'Gorin, A.' 2 ? primary 'Hingerty, B.E.' 3 ? primary 'Geacintov, N.E.' 4 ? primary 'Broyde, S.' 5 ? primary 'Patel, D.J.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA DUPLEX D(AAC-[BP]G-CTACCATCC)D(GGATGGTAGC)' 3880.552 1 ? ? ? 'DCC10 ATOM OF BP LINKED TO N2 ATOM OF DG4' 2 polymer syn 'DNA DUPLEX D(AAC-[BP]G-CTACCATCC)D(GGATGGTAGC)' 3125.052 1 ? ? ? 'DCC10 ATOM OF BP LINKED TO N2 ATOM OF DG4' 3 non-polymer syn '1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE' 304.339 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DA)(DC)(DG)(DC)(DT)(DA)(DC)(DC)(DA)(DT)(DC)(DC)' AACGCTACCATCC A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DT)(DG)(DG)(DT)(DA)(DG)(DC)' GGATGGTAGC B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name '1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE' _pdbx_entity_nonpoly.comp_id BAP # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DT n 1 7 DA n 1 8 DC n 1 9 DC n 1 10 DA n 1 11 DT n 1 12 DC n 1 13 DC n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DG n 2 7 DT n 2 8 DA n 2 9 DG n 2 10 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BAP non-polymer . '1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE' ? 'C20 H16 O3' 304.339 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DA 10 10 10 DA A A . n A 1 11 DT 11 11 11 DT T A . n A 1 12 DC 12 12 12 DC C A . n A 1 13 DC 13 13 13 DC C A . n B 2 1 DG 1 14 14 DG G B . n B 2 2 DG 2 15 15 DG G B . n B 2 3 DA 3 16 16 DA A B . n B 2 4 DT 4 17 17 DT T B . n B 2 5 DG 5 18 18 DG G B . n B 2 6 DG 6 19 19 DG G B . n B 2 7 DT 7 20 20 DT T B . n B 2 8 DA 8 21 21 DA A B . n B 2 9 DG 9 22 22 DG G B . n B 2 10 DC 10 23 23 DC C B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id BAP _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 14 _pdbx_nonpoly_scheme.auth_seq_num 4 _pdbx_nonpoly_scheme.pdb_mon_id BAP _pdbx_nonpoly_scheme.auth_mon_id BP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # _cell.entry_id 1AXO _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AXO _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1AXO _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1AXO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1AXO _struct.title ;STRUCTURAL ALIGNMENT OF THE (+)-TRANS-ANTI-[BP]DG ADDUCT POSITIONED OPPOSITE DC AT A DNA TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AXO _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DEOXYRIBONUCLEIC ACID, DNA, BENZO[A]PYRENE, CARCINOGEN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1AXO 1AXO ? ? ? 2 2 PDB 1AXO 1AXO ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AXO A 1 ? 13 ? 1AXO 1 ? 13 ? 1 13 2 2 1AXO B 1 ? 10 ? 1AXO 14 ? 23 ? 14 23 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DG 4 N2 ? ? ? 1_555 C BAP . "C4'" ? ? A DG 4 A BAP 14 1_555 ? ? ? ? ? ? ? 1.501 ? ? hydrog1 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 4 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 4 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 4 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 5 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 5 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 5 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 6 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 6 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 6 O2 ? ? ? 1_555 B DG 9 N1 ? ? A DT 6 B DG 22 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog10 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 7 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 7 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 8 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 8 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 8 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 9 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 9 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 9 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 10 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 10 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 11 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 11 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 12 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 12 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 12 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 13 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 13 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 13 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BAP _struct_site.pdbx_auth_seq_id 14 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE BAP A 14' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DC A 3 ? DC A 3 . ? 1_555 ? 2 AC1 6 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 6 DC A 5 ? DC A 5 . ? 1_555 ? 4 AC1 6 DT A 6 ? DT A 6 . ? 1_555 ? 5 AC1 6 DG B 9 ? DG B 22 . ? 1_555 ? 6 AC1 6 DC B 10 ? DC B 23 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "H5'" A DT 6 ? ? "O2'" A BAP 14 ? ? 1.49 2 1 N2 A DG 4 ? ? C6 A BAP 14 ? ? 2.12 3 2 N2 A DG 4 ? ? C6 A BAP 14 ? ? 2.14 4 3 N2 A DG 4 ? ? C6 A BAP 14 ? ? 2.17 5 4 N2 A DG 4 ? ? C6 A BAP 14 ? ? 2.09 6 5 N2 A DG 4 ? ? C6 A BAP 14 ? ? 2.18 7 6 "H5'" A DT 6 ? ? "O2'" A BAP 14 ? ? 1.58 8 6 N2 A DG 4 ? ? C6 A BAP 14 ? ? 2.09 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.558 1.512 0.046 0.007 N 2 1 C8 A DG 4 ? ? N9 A DG 4 ? ? 1.441 1.374 0.067 0.007 N 3 1 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.534 1.496 0.038 0.006 N 4 2 "C2'" A DG 4 ? ? "C1'" A DG 4 ? ? 1.592 1.519 0.073 0.010 N 5 2 C8 A DG 4 ? ? N9 A DG 4 ? ? 1.438 1.374 0.064 0.007 N 6 2 C5 A DT 6 ? ? C7 A DT 6 ? ? 1.541 1.496 0.045 0.006 N 7 2 "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? 1.558 1.512 0.046 0.007 N 8 2 N1 A DC 13 ? ? C6 A DC 13 ? ? 1.330 1.367 -0.037 0.006 N 9 2 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.542 1.496 0.046 0.006 N 10 3 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.660 1.593 0.067 0.010 N 11 3 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.570 1.512 0.058 0.007 N 12 3 C8 A DG 4 ? ? N9 A DG 4 ? ? 1.449 1.374 0.075 0.007 N 13 3 C5 A DT 6 ? ? C7 A DT 6 ? ? 1.534 1.496 0.038 0.006 N 14 3 "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? 1.569 1.512 0.057 0.007 N 15 3 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.536 1.496 0.040 0.006 N 16 3 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.544 1.496 0.048 0.006 N 17 4 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.560 1.512 0.048 0.007 N 18 4 C8 A DG 4 ? ? N9 A DG 4 ? ? 1.441 1.374 0.067 0.007 N 19 4 C5 A DT 6 ? ? C7 A DT 6 ? ? 1.534 1.496 0.038 0.006 N 20 4 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.548 1.496 0.052 0.006 N 21 4 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.532 1.496 0.036 0.006 N 22 5 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.572 1.512 0.060 0.007 N 23 5 C8 A DG 4 ? ? N9 A DG 4 ? ? 1.437 1.374 0.063 0.007 N 24 5 C5 A DT 6 ? ? C7 A DT 6 ? ? 1.550 1.496 0.054 0.006 N 25 5 "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? 1.557 1.512 0.045 0.007 N 26 5 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.558 1.496 0.062 0.006 N 27 5 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.533 1.496 0.037 0.006 N 28 6 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.661 1.593 0.068 0.010 N 29 6 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.572 1.512 0.060 0.007 N 30 6 "C2'" A DG 4 ? ? "C1'" A DG 4 ? ? 1.583 1.519 0.064 0.010 N 31 6 C8 A DG 4 ? ? N9 A DG 4 ? ? 1.453 1.374 0.079 0.007 N 32 6 C5 A DT 6 ? ? C7 A DT 6 ? ? 1.539 1.496 0.043 0.006 N 33 6 "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? 1.562 1.512 0.050 0.007 N 34 6 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.539 1.496 0.043 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A DA 1 ? ? "C3'" A DA 1 ? ? "C2'" A DA 1 ? ? 97.81 102.20 -4.39 0.70 N 2 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? "C2'" A DA 1 ? ? 97.27 105.90 -8.63 0.80 N 3 1 "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? "C2'" A DA 2 ? ? 97.33 102.20 -4.87 0.70 N 4 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 101.82 108.00 -6.18 0.70 N 5 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 128.02 115.70 12.32 1.20 N 6 1 N9 A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 125.85 114.30 11.55 1.40 N 7 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 94.62 108.00 -13.38 0.70 N 8 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 124.83 119.90 4.93 0.70 N 9 1 C8 A DG 4 ? ? N9 A DG 4 ? ? "C1'" A DG 4 ? ? 134.89 127.00 7.89 1.30 N 10 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DC 5 ? ? 129.40 119.70 9.70 1.20 Y 11 1 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 102.53 110.10 -7.57 1.00 N 12 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? "C2'" A DT 6 ? ? 100.47 105.90 -5.43 0.80 N 13 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 113.91 108.30 5.61 0.30 N 14 1 "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 126.68 115.70 10.98 1.20 N 15 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 113.24 108.30 4.94 0.30 N 16 1 "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? 97.67 102.20 -4.53 0.70 N 17 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 111.84 108.30 3.54 0.30 N 18 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 99.43 105.90 -6.47 0.80 N 19 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 103.73 108.00 -4.27 0.70 N 20 1 "C1'" A DT 11 ? ? "O4'" A DT 11 ? ? "C4'" A DT 11 ? ? 103.48 110.10 -6.62 1.00 N 21 1 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 114.48 108.30 6.18 0.30 N 22 1 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 117.54 122.90 -5.36 0.60 N 23 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 111.19 108.30 2.89 0.30 N 24 1 "C4'" B DG 15 ? ? "C3'" B DG 15 ? ? "C2'" B DG 15 ? ? 96.28 102.20 -5.92 0.70 N 25 1 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 113.24 108.30 4.94 0.30 N 26 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? N9 B DA 16 ? ? 111.24 108.30 2.94 0.30 N 27 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? "C2'" B DT 17 ? ? 98.44 105.90 -7.46 0.80 N 28 1 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 119.12 122.90 -3.78 0.60 N 29 1 "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? "C1'" B DG 18 ? ? 96.17 102.40 -6.23 0.80 N 30 1 "C3'" B DA 21 ? ? "C2'" B DA 21 ? ? "C1'" B DA 21 ? ? 96.29 102.40 -6.11 0.80 N 31 1 "O4'" B DG 22 ? ? "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? 101.26 104.50 -3.24 0.40 N 32 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 113.25 108.30 4.95 0.30 N 33 1 "C3'" B DG 22 ? ? "O3'" B DG 22 ? ? P B DC 23 ? ? 127.83 119.70 8.13 1.20 Y 34 1 N1 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 123.14 118.90 4.24 0.60 N 35 2 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? "C2'" A DA 1 ? ? 96.09 105.90 -9.81 0.80 N 36 2 "C3'" A DA 1 ? ? "O3'" A DA 1 ? ? P A DA 2 ? ? 127.62 119.70 7.92 1.20 Y 37 2 "C5'" A DA 2 ? ? "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? 123.29 115.70 7.59 1.20 N 38 2 "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? "C2'" A DA 2 ? ? 97.64 102.20 -4.56 0.70 N 39 2 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 96.24 102.40 -6.16 0.80 N 40 2 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 114.05 108.30 5.75 0.30 N 41 2 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 124.73 115.70 9.03 1.20 N 42 2 N9 A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 124.52 114.30 10.22 1.40 N 43 2 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 102.90 106.40 -3.50 0.40 N 44 2 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 124.34 119.90 4.44 0.70 N 45 2 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DC 5 ? ? 128.58 119.70 8.88 1.20 Y 46 2 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 101.54 104.50 -2.96 0.40 N 47 2 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 102.98 110.10 -7.12 1.00 N 48 2 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? "C2'" A DT 6 ? ? 100.31 105.90 -5.59 0.80 N 49 2 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? "C2'" A DA 7 ? ? 101.09 105.90 -4.81 0.80 N 50 2 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 112.15 108.30 3.85 0.30 N 51 2 "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 124.28 115.70 8.58 1.20 N 52 2 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.90 108.30 2.60 0.30 N 53 2 N1 A DC 8 ? ? C2 A DC 8 ? ? O2 A DC 8 ? ? 122.69 118.90 3.79 0.60 N 54 2 "C3'" A DC 9 ? ? "O3'" A DC 9 ? ? P A DA 10 ? ? 130.94 119.70 11.24 1.20 Y 55 2 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 99.35 105.90 -6.55 0.80 N 56 2 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 102.94 108.00 -5.06 0.70 N 57 2 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 112.11 108.30 3.81 0.30 N 58 2 C4 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 122.76 119.00 3.76 0.60 N 59 2 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 116.11 122.90 -6.79 0.60 N 60 2 N1 A DC 13 ? ? C2 A DC 13 ? ? O2 A DC 13 ? ? 123.16 118.90 4.26 0.60 N 61 2 "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 97.17 102.20 -5.03 0.70 N 62 2 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? "C2'" B DG 14 ? ? 100.80 105.90 -5.10 0.80 N 63 2 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DG 15 ? ? 129.07 119.70 9.37 1.20 Y 64 2 "C4'" B DG 15 ? ? "C3'" B DG 15 ? ? "C2'" B DG 15 ? ? 97.67 102.20 -4.53 0.70 N 65 2 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? N9 B DA 16 ? ? 110.13 108.30 1.83 0.30 N 66 2 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? "C2'" B DT 17 ? ? 99.25 105.90 -6.65 0.80 N 67 2 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 117.17 122.90 -5.73 0.60 N 68 2 "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? "C1'" B DG 18 ? ? 95.84 102.40 -6.56 0.80 N 69 2 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 100.27 105.90 -5.63 0.80 N 70 2 "C3'" B DG 18 ? ? "O3'" B DG 18 ? ? P B DG 19 ? ? 128.49 119.70 8.79 1.20 Y 71 2 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? "C2'" B DG 19 ? ? 100.99 105.90 -4.91 0.80 N 72 2 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? 97.40 102.20 -4.80 0.70 N 73 2 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 111.18 108.30 2.88 0.30 N 74 2 N3 B DT 20 ? ? C2 B DT 20 ? ? O2 B DT 20 ? ? 118.22 122.30 -4.08 0.60 N 75 2 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 101.03 108.00 -6.97 0.70 N 76 2 "O4'" B DG 22 ? ? "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? 101.04 104.50 -3.46 0.40 N 77 3 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? "C2'" A DA 1 ? ? 98.75 105.90 -7.15 0.80 N 78 3 "C3'" A DA 1 ? ? "O3'" A DA 1 ? ? P A DA 2 ? ? 128.33 119.70 8.63 1.20 Y 79 3 "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 124.05 115.70 8.35 1.20 N 80 3 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? ? 127.35 119.70 7.65 1.20 Y 81 3 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 100.49 104.50 -4.01 0.40 N 82 3 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 131.75 115.70 16.05 1.20 N 83 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 99.00 108.00 -9.00 0.70 N 84 3 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 103.97 106.40 -2.43 0.40 N 85 3 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 124.72 119.90 4.82 0.70 N 86 3 C8 A DG 4 ? ? N9 A DG 4 ? ? "C1'" A DG 4 ? ? 136.55 127.00 9.55 1.30 N 87 3 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 125.01 115.70 9.31 1.20 N 88 3 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 104.04 110.10 -6.06 1.00 N 89 3 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 99.41 105.90 -6.49 0.80 N 90 3 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? "C2'" A DT 6 ? ? 100.46 105.90 -5.44 0.80 N 91 3 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.10 108.30 1.80 0.30 N 92 3 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.28 122.90 -3.62 0.60 N 93 3 "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 124.64 115.70 8.94 1.20 N 94 3 "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? "C1'" A DC 9 ? ? 97.43 102.40 -4.97 0.80 N 95 3 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? "C2'" A DC 9 ? ? 100.79 105.90 -5.11 0.80 N 96 3 "C4'" A DA 10 ? ? "C3'" A DA 10 ? ? "C2'" A DA 10 ? ? 97.79 102.20 -4.41 0.70 N 97 3 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 100.92 105.90 -4.98 0.80 N 98 3 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.39 108.30 3.09 0.30 N 99 3 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.61 122.90 -4.29 0.60 N 100 3 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? "C2'" B DG 14 ? ? 100.98 105.90 -4.92 0.80 N 101 3 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 111.00 108.30 2.70 0.30 N 102 3 "C4'" B DG 15 ? ? "C3'" B DG 15 ? ? "C2'" B DG 15 ? ? 96.63 102.20 -5.57 0.70 N 103 3 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 112.87 108.30 4.57 0.30 N 104 3 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? N9 B DA 16 ? ? 110.66 108.30 2.36 0.30 N 105 3 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? "C2'" B DT 17 ? ? 100.78 105.90 -5.12 0.80 N 106 3 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 118.18 122.90 -4.72 0.60 N 107 3 "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? "C1'" B DG 18 ? ? 97.03 102.40 -5.37 0.80 N 108 3 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 112.93 108.30 4.63 0.30 N 109 3 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 111.32 108.30 3.02 0.30 N 110 3 "O4'" B DG 22 ? ? "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? 101.41 104.50 -3.09 0.40 N 111 3 N1 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 122.68 118.90 3.78 0.60 N 112 4 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? "C2'" A DA 1 ? ? 99.12 105.90 -6.78 0.80 N 113 4 "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? "C2'" A DA 2 ? ? 97.36 102.20 -4.84 0.70 N 114 4 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 99.54 108.00 -8.46 0.70 N 115 4 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.10 108.30 2.80 0.30 N 116 4 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 97.98 102.20 -4.22 0.70 N 117 4 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 101.10 105.90 -4.80 0.80 N 118 4 N9 A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 123.86 114.30 9.56 1.40 N 119 4 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 98.81 108.00 -9.19 0.70 N 120 4 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 103.49 106.40 -2.91 0.40 N 121 4 N1 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 110.13 116.20 -6.07 0.90 N 122 4 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 124.46 119.90 4.56 0.70 N 123 4 C8 A DG 4 ? ? N9 A DG 4 ? ? "C1'" A DG 4 ? ? 134.96 127.00 7.96 1.30 N 124 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 98.23 105.90 -7.67 0.80 N 125 4 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? "C2'" A DT 6 ? ? 98.75 105.90 -7.15 0.80 N 126 4 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 118.63 122.30 -3.67 0.60 N 127 4 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? "C2'" A DA 7 ? ? 100.36 105.90 -5.54 0.80 N 128 4 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.82 108.30 2.52 0.30 N 129 4 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? "C2'" A DC 8 ? ? 99.44 105.90 -6.46 0.80 N 130 4 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.64 108.30 2.34 0.30 N 131 4 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 99.61 105.90 -6.29 0.80 N 132 4 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 112.37 108.30 4.07 0.30 N 133 4 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 116.53 122.90 -6.37 0.60 N 134 4 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 103.79 108.00 -4.21 0.70 N 135 4 "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? "C1'" B DG 14 ? ? 97.17 102.40 -5.23 0.80 N 136 4 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? "C2'" B DG 14 ? ? 100.99 105.90 -4.91 0.80 N 137 4 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 111.01 108.30 2.71 0.30 N 138 4 "C4'" B DG 15 ? ? "C3'" B DG 15 ? ? "C2'" B DG 15 ? ? 97.78 102.20 -4.42 0.70 N 139 4 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 117.96 122.90 -4.94 0.60 N 140 4 "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? "C1'" B DG 18 ? ? 96.99 102.40 -5.41 0.80 N 141 4 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 100.16 105.90 -5.74 0.80 N 142 4 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 111.70 108.30 3.40 0.30 N 143 4 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 119.14 122.90 -3.76 0.60 N 144 4 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? "C2'" B DA 21 ? ? 100.27 105.90 -5.63 0.80 N 145 4 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 103.14 108.00 -4.86 0.70 N 146 4 N1 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 122.61 118.90 3.71 0.60 N 147 5 "C5'" A DA 1 ? ? "C4'" A DA 1 ? ? "C3'" A DA 1 ? ? 124.80 115.70 9.10 1.20 N 148 5 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? "C2'" A DA 1 ? ? 99.64 105.90 -6.26 0.80 N 149 5 "C5'" A DA 2 ? ? "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? 123.55 115.70 7.85 1.20 N 150 5 "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? "C2'" A DA 2 ? ? 97.24 102.20 -4.96 0.70 N 151 5 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 123.99 115.70 8.29 1.20 N 152 5 N9 A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 124.95 114.30 10.65 1.40 N 153 5 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 98.03 108.00 -9.97 0.70 N 154 5 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 103.85 106.40 -2.55 0.40 N 155 5 N1 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 110.54 116.20 -5.66 0.90 N 156 5 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 125.50 119.90 5.60 0.70 N 157 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 100.35 105.90 -5.55 0.80 N 158 5 "C5'" A DT 6 ? ? "C4'" A DT 6 ? ? "C3'" A DT 6 ? ? 123.24 115.70 7.54 1.20 N 159 5 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 103.08 108.00 -4.92 0.70 N 160 5 "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 126.76 115.70 11.06 1.20 N 161 5 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.23 108.30 2.93 0.30 N 162 5 "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? 97.96 102.20 -4.24 0.70 N 163 5 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 112.35 108.30 4.05 0.30 N 164 5 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 100.05 105.90 -5.85 0.80 N 165 5 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 100.58 108.00 -7.42 0.70 N 166 5 "C1'" A DT 11 ? ? "O4'" A DT 11 ? ? "C4'" A DT 11 ? ? 102.57 110.10 -7.53 1.00 N 167 5 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.91 108.30 3.61 0.30 N 168 5 C4 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 123.27 119.00 4.27 0.60 N 169 5 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 116.01 122.90 -6.89 0.60 N 170 5 "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 97.09 102.20 -5.11 0.70 N 171 5 "C4'" B DG 15 ? ? "C3'" B DG 15 ? ? "C2'" B DG 15 ? ? 97.44 102.20 -4.76 0.70 N 172 5 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 100.09 105.90 -5.81 0.80 N 173 5 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 111.73 108.30 3.43 0.30 N 174 5 "C3'" B DG 18 ? ? "O3'" B DG 18 ? ? P B DG 19 ? ? 128.87 119.70 9.17 1.20 Y 175 5 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 103.65 108.00 -4.35 0.70 N 176 5 "O4'" B DA 21 ? ? "C1'" B DA 21 ? ? N9 B DA 21 ? ? 101.74 108.00 -6.26 0.70 N 177 5 "O4'" B DG 22 ? ? "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? 101.03 104.50 -3.47 0.40 N 178 5 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 113.21 108.30 4.91 0.30 N 179 6 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? "C2'" A DA 1 ? ? 100.03 105.90 -5.87 0.80 N 180 6 "C3'" A DA 1 ? ? "O3'" A DA 1 ? ? P A DA 2 ? ? 129.00 119.70 9.30 1.20 Y 181 6 P A DA 2 ? ? "O5'" A DA 2 ? ? "C5'" A DA 2 ? ? 131.63 120.90 10.73 1.60 N 182 6 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 130.13 115.70 14.43 1.20 N 183 6 N9 A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 122.77 114.30 8.47 1.40 N 184 6 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 100.28 108.00 -7.72 0.70 N 185 6 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 102.99 106.40 -3.41 0.40 N 186 6 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 124.36 119.90 4.46 0.70 N 187 6 C8 A DG 4 ? ? N9 A DG 4 ? ? "C1'" A DG 4 ? ? 135.75 127.00 8.75 1.30 N 188 6 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DC 5 ? ? 131.14 119.70 11.44 1.20 Y 189 6 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 101.04 104.50 -3.46 0.40 N 190 6 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 103.56 110.10 -6.54 1.00 N 191 6 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? "C2'" A DT 6 ? ? 99.35 105.90 -6.55 0.80 N 192 6 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 112.68 108.30 4.38 0.30 N 193 6 "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 124.88 115.70 9.18 1.20 N 194 6 "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? "C1'" A DC 9 ? ? 96.97 102.40 -5.43 0.80 N 195 6 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 98.20 105.90 -7.70 0.80 N 196 6 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? "C2'" A DT 11 ? ? 100.77 105.90 -5.13 0.80 N 197 6 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.55 108.30 3.25 0.30 N 198 6 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 116.62 122.90 -6.28 0.60 N 199 6 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DG 15 ? ? 127.05 119.70 7.35 1.20 Y 200 6 "C4'" B DG 15 ? ? "C3'" B DG 15 ? ? "C2'" B DG 15 ? ? 97.70 102.20 -4.50 0.70 N 201 6 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? N9 B DA 16 ? ? 110.26 108.30 1.96 0.30 N 202 6 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? "C2'" B DT 17 ? ? 100.16 105.90 -5.74 0.80 N 203 6 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 117.71 122.90 -5.19 0.60 N 204 6 "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? "C1'" B DG 18 ? ? 97.20 102.40 -5.20 0.80 N 205 6 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? "C2'" B DG 18 ? ? 99.67 105.90 -6.23 0.80 N 206 6 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 102.07 108.00 -5.93 0.70 N 207 6 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? "C2'" B DG 19 ? ? 100.72 105.90 -5.18 0.80 N 208 6 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9 B DG 19 ? ? 110.24 108.30 1.94 0.30 N 209 6 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? 97.77 102.20 -4.43 0.70 N 210 6 "C4'" B DA 21 ? ? "C3'" B DA 21 ? ? "C2'" B DA 21 ? ? 97.98 102.20 -4.22 0.70 N 211 6 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.58 108.30 2.28 0.30 N # _pdbx_nmr_ensemble.entry_id 1AXO _pdbx_nmr_ensemble.conformers_calculated_total_number 6 _pdbx_nmr_ensemble.conformers_submitted_total_number 6 _pdbx_nmr_ensemble.conformer_selection_criteria 'ALL CONFORMERS WERE INCLUDED' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 317 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 3 1 TOCSY 1 4 1 DQF-COSY 1 # _pdbx_nmr_refine.entry_id 1AXO _pdbx_nmr_refine.method 'RELAXATION MATRIX REFINEMENT' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' VNMR ? ? 2 'structure solution' DUPLEX ? ? 3 'structure solution' X-PLOR ? ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BAP C1 C Y N 1 BAP C2 C Y N 2 BAP C3 C Y N 3 BAP C3A C Y N 4 BAP C4 C Y N 5 BAP C5 C Y N 6 BAP C5A C Y N 7 BAP C6 C Y N 8 BAP C7 C Y N 9 BAP C8 C Y N 10 BAP C8A C Y N 11 BAP C9 C Y N 12 BAP C10 C Y N 13 BAP C1A C Y N 14 BAP C3B C Y N 15 BAP C5B C Y N 16 BAP "C1'" C N R 17 BAP "O1'" O N N 18 BAP "C2'" C N R 19 BAP "O2'" O N N 20 BAP "C3'" C N R 21 BAP "O3'" O N N 22 BAP "C4'" C N N 23 BAP H1 H N N 24 BAP H2 H N N 25 BAP H3 H N N 26 BAP H4 H N N 27 BAP H5 H N N 28 BAP H8 H N N 29 BAP H9 H N N 30 BAP H10 H N N 31 BAP "H1'" H N N 32 BAP HO1 H N N 33 BAP "H2'" H N N 34 BAP HO2 H N N 35 BAP "H3'" H N N 36 BAP HO3 H N N 37 BAP "H4'1" H N N 38 BAP "H4'2" H N N 39 DA OP3 O N N 40 DA P P N N 41 DA OP1 O N N 42 DA OP2 O N N 43 DA "O5'" O N N 44 DA "C5'" C N N 45 DA "C4'" C N R 46 DA "O4'" O N N 47 DA "C3'" C N S 48 DA "O3'" O N N 49 DA "C2'" C N N 50 DA "C1'" C N R 51 DA N9 N Y N 52 DA C8 C Y N 53 DA N7 N Y N 54 DA C5 C Y N 55 DA C6 C Y N 56 DA N6 N N N 57 DA N1 N Y N 58 DA C2 C Y N 59 DA N3 N Y N 60 DA C4 C Y N 61 DA HOP3 H N N 62 DA HOP2 H N N 63 DA "H5'" H N N 64 DA "H5''" H N N 65 DA "H4'" H N N 66 DA "H3'" H N N 67 DA "HO3'" H N N 68 DA "H2'" H N N 69 DA "H2''" H N N 70 DA "H1'" H N N 71 DA H8 H N N 72 DA H61 H N N 73 DA H62 H N N 74 DA H2 H N N 75 DC OP3 O N N 76 DC P P N N 77 DC OP1 O N N 78 DC OP2 O N N 79 DC "O5'" O N N 80 DC "C5'" C N N 81 DC "C4'" C N R 82 DC "O4'" O N N 83 DC "C3'" C N S 84 DC "O3'" O N N 85 DC "C2'" C N N 86 DC "C1'" C N R 87 DC N1 N N N 88 DC C2 C N N 89 DC O2 O N N 90 DC N3 N N N 91 DC C4 C N N 92 DC N4 N N N 93 DC C5 C N N 94 DC C6 C N N 95 DC HOP3 H N N 96 DC HOP2 H N N 97 DC "H5'" H N N 98 DC "H5''" H N N 99 DC "H4'" H N N 100 DC "H3'" H N N 101 DC "HO3'" H N N 102 DC "H2'" H N N 103 DC "H2''" H N N 104 DC "H1'" H N N 105 DC H41 H N N 106 DC H42 H N N 107 DC H5 H N N 108 DC H6 H N N 109 DG OP3 O N N 110 DG P P N N 111 DG OP1 O N N 112 DG OP2 O N N 113 DG "O5'" O N N 114 DG "C5'" C N N 115 DG "C4'" C N R 116 DG "O4'" O N N 117 DG "C3'" C N S 118 DG "O3'" O N N 119 DG "C2'" C N N 120 DG "C1'" C N R 121 DG N9 N Y N 122 DG C8 C Y N 123 DG N7 N Y N 124 DG C5 C Y N 125 DG C6 C N N 126 DG O6 O N N 127 DG N1 N N N 128 DG C2 C N N 129 DG N2 N N N 130 DG N3 N N N 131 DG C4 C Y N 132 DG HOP3 H N N 133 DG HOP2 H N N 134 DG "H5'" H N N 135 DG "H5''" H N N 136 DG "H4'" H N N 137 DG "H3'" H N N 138 DG "HO3'" H N N 139 DG "H2'" H N N 140 DG "H2''" H N N 141 DG "H1'" H N N 142 DG H8 H N N 143 DG H1 H N N 144 DG H21 H N N 145 DG H22 H N N 146 DT OP3 O N N 147 DT P P N N 148 DT OP1 O N N 149 DT OP2 O N N 150 DT "O5'" O N N 151 DT "C5'" C N N 152 DT "C4'" C N R 153 DT "O4'" O N N 154 DT "C3'" C N S 155 DT "O3'" O N N 156 DT "C2'" C N N 157 DT "C1'" C N R 158 DT N1 N N N 159 DT C2 C N N 160 DT O2 O N N 161 DT N3 N N N 162 DT C4 C N N 163 DT O4 O N N 164 DT C5 C N N 165 DT C7 C N N 166 DT C6 C N N 167 DT HOP3 H N N 168 DT HOP2 H N N 169 DT "H5'" H N N 170 DT "H5''" H N N 171 DT "H4'" H N N 172 DT "H3'" H N N 173 DT "HO3'" H N N 174 DT "H2'" H N N 175 DT "H2''" H N N 176 DT "H1'" H N N 177 DT H3 H N N 178 DT H71 H N N 179 DT H72 H N N 180 DT H73 H N N 181 DT H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BAP C1 C2 doub Y N 1 BAP C1 C1A sing Y N 2 BAP C1 H1 sing N N 3 BAP C2 C3 sing Y N 4 BAP C2 H2 sing N N 5 BAP C3 C3A doub Y N 6 BAP C3 H3 sing N N 7 BAP C3A C4 sing Y N 8 BAP C3A C3B sing Y N 9 BAP C4 C5 doub Y N 10 BAP C4 H4 sing N N 11 BAP C5 C5A sing Y N 12 BAP C5 H5 sing N N 13 BAP C5A C6 doub Y N 14 BAP C5A C5B sing Y N 15 BAP C6 C7 sing Y N 16 BAP C6 "C4'" sing N N 17 BAP C7 C8 doub Y N 18 BAP C7 "C1'" sing N N 19 BAP C8 C8A sing Y N 20 BAP C8 H8 sing N N 21 BAP C8A C9 doub Y N 22 BAP C8A C5B sing Y N 23 BAP C9 C10 sing Y N 24 BAP C9 H9 sing N N 25 BAP C10 C1A doub Y N 26 BAP C10 H10 sing N N 27 BAP C1A C3B sing Y N 28 BAP C3B C5B doub Y N 29 BAP "C1'" "O1'" sing N N 30 BAP "C1'" "C2'" sing N N 31 BAP "C1'" "H1'" sing N N 32 BAP "O1'" HO1 sing N N 33 BAP "C2'" "O2'" sing N N 34 BAP "C2'" "C3'" sing N N 35 BAP "C2'" "H2'" sing N N 36 BAP "O2'" HO2 sing N N 37 BAP "C3'" "O3'" sing N N 38 BAP "C3'" "C4'" sing N N 39 BAP "C3'" "H3'" sing N N 40 BAP "O3'" HO3 sing N N 41 BAP "C4'" "H4'1" sing N N 42 BAP "C4'" "H4'2" sing N N 43 DA OP3 P sing N N 44 DA OP3 HOP3 sing N N 45 DA P OP1 doub N N 46 DA P OP2 sing N N 47 DA P "O5'" sing N N 48 DA OP2 HOP2 sing N N 49 DA "O5'" "C5'" sing N N 50 DA "C5'" "C4'" sing N N 51 DA "C5'" "H5'" sing N N 52 DA "C5'" "H5''" sing N N 53 DA "C4'" "O4'" sing N N 54 DA "C4'" "C3'" sing N N 55 DA "C4'" "H4'" sing N N 56 DA "O4'" "C1'" sing N N 57 DA "C3'" "O3'" sing N N 58 DA "C3'" "C2'" sing N N 59 DA "C3'" "H3'" sing N N 60 DA "O3'" "HO3'" sing N N 61 DA "C2'" "C1'" sing N N 62 DA "C2'" "H2'" sing N N 63 DA "C2'" "H2''" sing N N 64 DA "C1'" N9 sing N N 65 DA "C1'" "H1'" sing N N 66 DA N9 C8 sing Y N 67 DA N9 C4 sing Y N 68 DA C8 N7 doub Y N 69 DA C8 H8 sing N N 70 DA N7 C5 sing Y N 71 DA C5 C6 sing Y N 72 DA C5 C4 doub Y N 73 DA C6 N6 sing N N 74 DA C6 N1 doub Y N 75 DA N6 H61 sing N N 76 DA N6 H62 sing N N 77 DA N1 C2 sing Y N 78 DA C2 N3 doub Y N 79 DA C2 H2 sing N N 80 DA N3 C4 sing Y N 81 DC OP3 P sing N N 82 DC OP3 HOP3 sing N N 83 DC P OP1 doub N N 84 DC P OP2 sing N N 85 DC P "O5'" sing N N 86 DC OP2 HOP2 sing N N 87 DC "O5'" "C5'" sing N N 88 DC "C5'" "C4'" sing N N 89 DC "C5'" "H5'" sing N N 90 DC "C5'" "H5''" sing N N 91 DC "C4'" "O4'" sing N N 92 DC "C4'" "C3'" sing N N 93 DC "C4'" "H4'" sing N N 94 DC "O4'" "C1'" sing N N 95 DC "C3'" "O3'" sing N N 96 DC "C3'" "C2'" sing N N 97 DC "C3'" "H3'" sing N N 98 DC "O3'" "HO3'" sing N N 99 DC "C2'" "C1'" sing N N 100 DC "C2'" "H2'" sing N N 101 DC "C2'" "H2''" sing N N 102 DC "C1'" N1 sing N N 103 DC "C1'" "H1'" sing N N 104 DC N1 C2 sing N N 105 DC N1 C6 sing N N 106 DC C2 O2 doub N N 107 DC C2 N3 sing N N 108 DC N3 C4 doub N N 109 DC C4 N4 sing N N 110 DC C4 C5 sing N N 111 DC N4 H41 sing N N 112 DC N4 H42 sing N N 113 DC C5 C6 doub N N 114 DC C5 H5 sing N N 115 DC C6 H6 sing N N 116 DG OP3 P sing N N 117 DG OP3 HOP3 sing N N 118 DG P OP1 doub N N 119 DG P OP2 sing N N 120 DG P "O5'" sing N N 121 DG OP2 HOP2 sing N N 122 DG "O5'" "C5'" sing N N 123 DG "C5'" "C4'" sing N N 124 DG "C5'" "H5'" sing N N 125 DG "C5'" "H5''" sing N N 126 DG "C4'" "O4'" sing N N 127 DG "C4'" "C3'" sing N N 128 DG "C4'" "H4'" sing N N 129 DG "O4'" "C1'" sing N N 130 DG "C3'" "O3'" sing N N 131 DG "C3'" "C2'" sing N N 132 DG "C3'" "H3'" sing N N 133 DG "O3'" "HO3'" sing N N 134 DG "C2'" "C1'" sing N N 135 DG "C2'" "H2'" sing N N 136 DG "C2'" "H2''" sing N N 137 DG "C1'" N9 sing N N 138 DG "C1'" "H1'" sing N N 139 DG N9 C8 sing Y N 140 DG N9 C4 sing Y N 141 DG C8 N7 doub Y N 142 DG C8 H8 sing N N 143 DG N7 C5 sing Y N 144 DG C5 C6 sing N N 145 DG C5 C4 doub Y N 146 DG C6 O6 doub N N 147 DG C6 N1 sing N N 148 DG N1 C2 sing N N 149 DG N1 H1 sing N N 150 DG C2 N2 sing N N 151 DG C2 N3 doub N N 152 DG N2 H21 sing N N 153 DG N2 H22 sing N N 154 DG N3 C4 sing N N 155 DT OP3 P sing N N 156 DT OP3 HOP3 sing N N 157 DT P OP1 doub N N 158 DT P OP2 sing N N 159 DT P "O5'" sing N N 160 DT OP2 HOP2 sing N N 161 DT "O5'" "C5'" sing N N 162 DT "C5'" "C4'" sing N N 163 DT "C5'" "H5'" sing N N 164 DT "C5'" "H5''" sing N N 165 DT "C4'" "O4'" sing N N 166 DT "C4'" "C3'" sing N N 167 DT "C4'" "H4'" sing N N 168 DT "O4'" "C1'" sing N N 169 DT "C3'" "O3'" sing N N 170 DT "C3'" "C2'" sing N N 171 DT "C3'" "H3'" sing N N 172 DT "O3'" "HO3'" sing N N 173 DT "C2'" "C1'" sing N N 174 DT "C2'" "H2'" sing N N 175 DT "C2'" "H2''" sing N N 176 DT "C1'" N1 sing N N 177 DT "C1'" "H1'" sing N N 178 DT N1 C2 sing N N 179 DT N1 C6 sing N N 180 DT C2 O2 doub N N 181 DT C2 N3 sing N N 182 DT N3 C4 sing N N 183 DT N3 H3 sing N N 184 DT C4 O4 doub N N 185 DT C4 C5 sing N N 186 DT C5 C7 sing N N 187 DT C5 C6 doub N N 188 DT C7 H71 sing N N 189 DT C7 H72 sing N N 190 DT C7 H73 sing N N 191 DT C6 H6 sing N N 192 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1AXO 'double helix' 1AXO 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 4 1_555 B DC 10 1_555 -1.309 -0.396 -0.638 -24.197 -19.320 0.040 1 A_DG4:DC23_B A 4 ? B 23 ? 19 1 1 A DC 5 1_555 B DG 9 1_555 1.109 -0.567 0.317 -11.555 3.004 -0.866 2 A_DC5:DG22_B A 5 ? B 22 ? 19 1 1 A DT 6 1_555 B DA 8 1_555 -0.195 -0.105 -0.325 16.822 -14.101 3.080 3 A_DT6:DA21_B A 6 ? B 21 ? 20 1 1 A DA 7 1_555 B DT 7 1_555 0.570 -0.057 0.266 20.739 -18.574 6.293 4 A_DA7:DT20_B A 7 ? B 20 ? 20 1 1 A DC 8 1_555 B DG 6 1_555 0.516 0.006 -0.728 30.600 -30.085 6.601 5 A_DC8:DG19_B A 8 ? B 19 ? 19 1 1 A DC 9 1_555 B DG 5 1_555 0.789 -0.230 0.002 -14.488 -4.333 1.454 6 A_DC9:DG18_B A 9 ? B 18 ? 19 1 1 A DA 10 1_555 B DT 4 1_555 0.269 -0.146 0.147 -0.521 -11.918 3.969 7 A_DA10:DT17_B A 10 ? B 17 ? 20 1 1 A DT 11 1_555 B DA 3 1_555 -0.044 -0.118 -0.182 15.770 -13.675 2.872 8 A_DT11:DA16_B A 11 ? B 16 ? 20 1 1 A DC 12 1_555 B DG 2 1_555 0.929 -0.344 -0.694 18.645 -6.189 0.812 9 A_DC12:DG15_B A 12 ? B 15 ? 19 1 1 A DC 13 1_555 B DG 1 1_555 1.122 -0.527 0.133 -4.297 16.811 -0.492 10 A_DC13:DG14_B A 13 ? B 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 4 1_555 B DC 10 1_555 A DC 5 1_555 B DG 9 1_555 0.048 0.490 2.920 -12.598 3.025 43.276 0.395 -1.079 2.827 3.996 16.642 45.084 1 AA_DG4DC5:DG22DC23_BB A 4 ? B 23 ? A 5 ? B 22 ? 1 A DC 5 1_555 B DG 9 1_555 A DT 6 1_555 B DA 8 1_555 0.465 -0.838 2.340 4.136 3.017 19.845 -3.309 -0.001 2.238 8.572 -11.751 20.488 2 AA_DC5DT6:DA21DG22_BB A 5 ? B 22 ? A 6 ? B 21 ? 1 A DT 6 1_555 B DA 8 1_555 A DA 7 1_555 B DT 7 1_555 0.990 -1.181 3.445 1.825 0.057 31.132 -2.208 -1.472 3.494 0.106 -3.396 31.184 3 AA_DT6DA7:DT20DA21_BB A 6 ? B 21 ? A 7 ? B 20 ? 1 A DA 7 1_555 B DT 7 1_555 A DC 8 1_555 B DG 6 1_555 -0.094 -0.490 2.819 7.288 -1.754 38.324 -0.551 0.899 2.774 -2.641 -10.973 39.023 4 AA_DA7DC8:DG19DT20_BB A 7 ? B 20 ? A 8 ? B 19 ? 1 A DC 8 1_555 B DG 6 1_555 A DC 9 1_555 B DG 5 1_555 -0.105 -1.351 4.874 -3.259 2.814 43.637 -2.205 -0.317 4.778 3.774 4.371 43.839 5 AA_DC8DC9:DG18DG19_BB A 8 ? B 19 ? A 9 ? B 18 ? 1 A DC 9 1_555 B DG 5 1_555 A DA 10 1_555 B DT 4 1_555 -0.990 -0.464 3.375 2.452 0.944 30.031 -1.088 2.412 3.270 1.817 -4.721 30.143 6 AA_DC9DA10:DT17DG18_BB A 9 ? B 18 ? A 10 ? B 17 ? 1 A DA 10 1_555 B DT 4 1_555 A DT 11 1_555 B DA 3 1_555 0.100 0.243 2.874 -2.059 -5.826 32.338 1.295 -0.484 2.777 -10.342 3.655 32.907 7 AA_DA10DT11:DA16DT17_BB A 10 ? B 17 ? A 11 ? B 16 ? 1 A DT 11 1_555 B DA 3 1_555 A DC 12 1_555 B DG 2 1_555 0.464 -0.408 3.303 4.313 -0.609 44.637 -0.479 -0.210 3.337 -0.799 -5.662 44.839 8 AA_DT11DC12:DG15DA16_BB A 11 ? B 16 ? A 12 ? B 15 ? 1 A DC 12 1_555 B DG 2 1_555 A DC 13 1_555 B DG 1 1_555 0.106 -1.466 4.061 1.475 15.021 34.660 -4.519 0.057 3.181 23.863 -2.342 37.712 9 AA_DC12DC13:DG14DG15_BB A 12 ? B 15 ? A 13 ? B 14 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 'VARIAN UNITY PLUS' Varian 500 2 'VARIAN UNITY PLUS' Varian 600 # _atom_sites.entry_id 1AXO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_