data_1AXU # _entry.id 1AXU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AXU pdb_00001axu 10.2210/pdb1axu/pdb WWPDB D_1000171388 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-07-01 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AXU _pdbx_database_status.recvd_initial_deposition_date 1997-10-21 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gu, Z.' 1 'Gorin, A.A.' 2 'Krishnasami, R.' 3 'Hingerty, B.E.' 4 'Basu, A.K.' 5 'Broyde, S.' 6 'Patel, D.J.' 7 # _citation.id primary _citation.title 'Solution structure of the N-(deoxyguanosin-8-yl)-1-aminopyrene ([AP]dG) adduct opposite dA in a DNA duplex.' _citation.journal_abbrev Biochemistry _citation.journal_volume 38 _citation.page_first 10843 _citation.page_last 10854 _citation.year 1999 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10451381 _citation.pdbx_database_id_DOI 10.1021/bi9912138 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gu, Z.' 1 ? primary 'Gorin, A.' 2 ? primary 'Krishnasamy, R.' 3 ? primary 'Hingerty, B.E.' 4 ? primary 'Basu, A.K.' 5 ? primary 'Broyde, S.' 6 ? primary 'Patel, D.J.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA DUPLEX D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG)' 3254.138 1 ? ? ? 'N1 ATOM OF AP LINKED TO C8 ATOM OF DG6' 2 polymer syn 'DNA DUPLEX D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG)' 3478.283 1 ? ? ? 'N1 ATOM OF AP LINKED TO C8 ATOM OF DG6' 3 non-polymer syn N-1-AMINOPYRENE 217.265 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DA)(DT)(DC)(DG)(DC)(DT)(DA)(DC)(DC)' CCATCGCTACC A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DT)(DA)(DG)(DA)(DG)(DA)(DT)(DG)(DG)' GGTAGAGATGG B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name N-1-AMINOPYRENE _pdbx_entity_nonpoly.comp_id AP # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DT n 1 9 DA n 1 10 DC n 1 11 DC n 2 1 DG n 2 2 DG n 2 3 DT n 2 4 DA n 2 5 DG n 2 6 DA n 2 7 DG n 2 8 DA n 2 9 DT n 2 10 DG n 2 11 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AP non-polymer . N-1-AMINOPYRENE ? 'C16 H11 N' 217.265 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DC 11 11 11 DC C A . n B 2 1 DG 1 12 12 DG G B . n B 2 2 DG 2 13 13 DG G B . n B 2 3 DT 3 14 14 DT T B . n B 2 4 DA 4 15 15 DA A B . n B 2 5 DG 5 16 16 DG G B . n B 2 6 DA 6 17 17 DA A B . n B 2 7 DG 7 18 18 DG G B . n B 2 8 DA 8 19 19 DA A B . n B 2 9 DT 9 20 20 DT T B . n B 2 10 DG 10 21 21 DG G B . n B 2 11 DG 11 22 22 DG G B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id AP _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 23 _pdbx_nonpoly_scheme.auth_seq_num 23 _pdbx_nonpoly_scheme.pdb_mon_id AP _pdbx_nonpoly_scheme.auth_mon_id AP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # _cell.entry_id 1AXU _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AXU _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1AXU _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1AXU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1AXU _struct.title 'SOLUTION NMR STRUCTURE OF THE [AP]DG ADDUCT OPPOSITE DA IN A DNA DUPLEX, NMR, 9 STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AXU _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA DUPLEX, AMINOPYRENE ADDUCT, CARCINOGEN ADDUCT, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1AXU 1AXU ? ? ? 2 2 PDB 1AXU 1AXU ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AXU A 1 ? 11 ? 1AXU 1 ? 11 ? 1 11 2 2 1AXU B 1 ? 11 ? 1AXU 12 ? 22 ? 12 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DG 6 C8 ? ? ? 1_555 C AP . N1 ? ? A DG 6 A AP 23 1_555 ? ? ? ? ? ? ? 1.481 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 2 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 2 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 2 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 3 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 3 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 4 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 4 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DA 4 N1 ? ? A DC 7 B DA 15 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 7 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 8 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 8 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 10 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id AP _struct_site.pdbx_auth_seq_id 23 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE AP A 23' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DG A 6 ? DG A 6 . ? 1_555 ? 2 AC1 5 DC A 7 ? DC A 7 . ? 1_555 ? 3 AC1 5 DG B 5 ? DG B 16 . ? 1_555 ? 4 AC1 5 DA B 6 ? DA B 17 . ? 1_555 ? 5 AC1 5 DG B 7 ? DG B 18 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.559 1.496 0.063 0.006 N 2 1 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? 1.554 1.512 0.042 0.007 N 3 1 "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 1.588 1.519 0.069 0.010 N 4 1 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.537 1.496 0.041 0.006 N 5 2 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.560 1.496 0.064 0.006 N 6 2 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.558 1.496 0.062 0.006 N 7 2 C5 B DT 14 ? ? C7 B DT 14 ? ? 1.563 1.496 0.067 0.006 N 8 2 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.549 1.496 0.053 0.006 N 9 3 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 1.556 1.512 0.044 0.007 N 10 3 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.545 1.496 0.049 0.006 N 11 3 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.548 1.496 0.052 0.006 N 12 3 C5 B DT 14 ? ? C7 B DT 14 ? ? 1.538 1.496 0.042 0.006 N 13 4 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.553 1.496 0.057 0.006 N 14 4 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.548 1.496 0.052 0.006 N 15 4 "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? 1.555 1.512 0.043 0.007 N 16 4 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.556 1.496 0.060 0.006 N 17 5 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.544 1.496 0.048 0.006 N 18 5 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.546 1.496 0.050 0.006 N 19 5 "C5'" B DA 19 ? ? "C4'" B DA 19 ? ? 1.558 1.512 0.046 0.007 N 20 5 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.548 1.496 0.052 0.006 N 21 6 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 1.564 1.512 0.052 0.007 N 22 6 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.549 1.496 0.053 0.006 N 23 6 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.542 1.496 0.046 0.006 N 24 6 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.538 1.496 0.042 0.006 N 25 7 "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? 1.564 1.512 0.052 0.007 N 26 7 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.551 1.496 0.055 0.006 N 27 7 "C5'" B DT 20 ? ? "C4'" B DT 20 ? ? 1.557 1.512 0.045 0.007 N 28 8 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.552 1.496 0.056 0.006 N 29 8 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.533 1.496 0.037 0.006 N 30 8 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.547 1.496 0.051 0.006 N 31 9 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.537 1.496 0.041 0.006 N 32 9 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.533 1.496 0.037 0.006 N 33 9 C5 B DT 14 ? ? C7 B DT 14 ? ? 1.547 1.496 0.051 0.006 N 34 9 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.568 1.496 0.072 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 98.75 105.90 -7.15 0.80 N 2 1 "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? "C1'" A DC 2 ? ? 97.33 102.40 -5.07 0.80 N 3 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 98.97 105.90 -6.93 0.80 N 4 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 97.48 102.40 -4.92 0.80 N 5 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 100.56 105.90 -5.34 0.80 N 6 1 "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? "O4'" A DG 6 ? ? 117.18 109.80 7.38 1.10 N 7 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? "C2'" A DG 6 ? ? 99.61 105.90 -6.29 0.80 N 8 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.13 108.30 3.83 0.30 N 9 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 103.74 108.00 -4.26 0.70 N 10 1 "C1'" A DT 8 ? ? "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 103.24 110.10 -6.86 1.00 N 11 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 99.40 108.00 -8.60 0.70 N 12 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 113.87 108.30 5.57 0.30 N 13 1 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 96.29 102.20 -5.91 0.70 N 14 1 "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 96.99 102.40 -5.41 0.80 N 15 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 112.56 108.30 4.26 0.30 N 16 1 "C1'" B DA 15 ? ? "O4'" B DA 15 ? ? "C4'" B DA 15 ? ? 103.15 110.10 -6.95 1.00 N 17 1 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 113.30 108.30 5.00 0.30 N 18 1 "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? 125.69 112.30 13.39 2.00 N 19 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 101.43 108.00 -6.57 0.70 N 20 1 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 111.55 108.30 3.25 0.30 N 21 1 "C3'" B DG 18 ? ? "O3'" B DG 18 ? ? P B DA 19 ? ? 128.57 119.70 8.87 1.20 Y 22 1 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 118.09 122.90 -4.81 0.60 N 23 1 "C3'" B DG 21 ? ? "O3'" B DG 21 ? ? P B DG 22 ? ? 129.90 119.70 10.20 1.20 Y 24 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 101.66 108.00 -6.34 0.70 N 25 2 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.65 102.20 -4.55 0.70 N 26 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 101.42 108.00 -6.58 0.70 N 27 2 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.10 118.90 4.20 0.60 N 28 2 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.21 108.30 2.91 0.30 N 29 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 100.70 105.90 -5.20 0.80 N 30 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.51 108.30 3.21 0.30 N 31 2 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 100.42 105.90 -5.48 0.80 N 32 2 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 101.87 108.00 -6.13 0.70 N 33 2 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 99.43 105.90 -6.47 0.80 N 34 2 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.84 108.30 3.54 0.30 N 35 2 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 122.65 118.90 3.75 0.60 N 36 2 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 95.88 102.20 -6.32 0.70 N 37 2 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.82 108.30 2.52 0.30 N 38 2 "C1'" B DA 15 ? ? "O4'" B DA 15 ? ? "C4'" B DA 15 ? ? 100.51 110.10 -9.59 1.00 N 39 2 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 112.02 108.30 3.72 0.30 N 40 2 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? 98.14 104.50 -6.36 0.40 N 41 2 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 101.99 110.10 -8.11 1.00 N 42 2 "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 123.46 115.70 7.76 1.20 N 43 2 "C4'" B DG 18 ? ? "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? 96.50 102.20 -5.70 0.70 N 44 2 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 111.97 108.30 3.67 0.30 N 45 2 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 103.68 108.00 -4.32 0.70 N 46 2 C4 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 122.74 119.00 3.74 0.60 N 47 2 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 116.87 122.90 -6.03 0.60 N 48 2 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 102.07 108.00 -5.93 0.70 N 49 2 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 102.48 108.00 -5.52 0.70 N 50 3 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.65 102.20 -4.55 0.70 N 51 3 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 97.18 102.40 -5.22 0.80 N 52 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 102.16 108.00 -5.84 0.70 N 53 3 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? "C3'" A DT 4 ? ? 126.54 115.70 10.84 1.20 N 54 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.10 108.30 1.80 0.30 N 55 3 "C3'" A DT 4 ? ? "O3'" A DT 4 ? ? P A DC 5 ? ? 127.46 119.70 7.76 1.20 Y 56 3 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.10 108.30 3.80 0.30 N 57 3 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 99.68 105.90 -6.22 0.80 N 58 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 99.51 105.90 -6.39 0.80 N 59 3 "C3'" A DC 10 ? ? "C2'" A DC 10 ? ? "C1'" A DC 10 ? ? 97.28 102.40 -5.12 0.80 N 60 3 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.74 108.30 2.44 0.30 N 61 3 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 96.56 102.20 -5.64 0.70 N 62 3 "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 97.09 102.40 -5.31 0.80 N 63 3 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 113.01 108.30 4.71 0.30 N 64 3 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 112.93 108.30 4.63 0.30 N 65 3 "C1'" B DA 15 ? ? "O4'" B DA 15 ? ? "C4'" B DA 15 ? ? 102.16 110.10 -7.94 1.00 N 66 3 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 115.07 108.30 6.77 0.30 N 67 3 P B DG 16 ? ? "O5'" B DG 16 ? ? "C5'" B DG 16 ? ? 132.09 120.90 11.19 1.60 N 68 3 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? 98.95 104.50 -5.55 0.40 N 69 3 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 102.38 110.10 -7.72 1.00 N 70 3 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.12 108.30 1.82 0.30 N 71 3 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 128.03 119.70 8.33 1.20 Y 72 3 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DG 18 ? ? 127.38 119.70 7.68 1.20 Y 73 3 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 111.73 108.30 3.43 0.30 N 74 3 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? "C2'" B DA 19 ? ? 100.59 105.90 -5.31 0.80 N 75 3 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? 97.80 102.20 -4.40 0.70 N 76 3 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 118.51 122.90 -4.39 0.60 N 77 3 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? "C2'" B DG 21 ? ? 100.56 105.90 -5.34 0.80 N 78 3 "C3'" B DG 21 ? ? "O3'" B DG 21 ? ? P B DG 22 ? ? 127.52 119.70 7.82 1.20 Y 79 3 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 97.53 102.40 -4.87 0.80 N 80 4 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.47 102.20 -4.73 0.70 N 81 4 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 96.44 102.40 -5.96 0.80 N 82 4 "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 97.73 102.20 -4.47 0.70 N 83 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 99.18 105.90 -6.72 0.80 N 84 4 C4 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 122.91 119.00 3.91 0.60 N 85 4 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.36 122.90 -5.54 0.60 N 86 4 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? "O4'" A DC 5 ? ? 116.54 109.80 6.74 1.10 N 87 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 99.35 105.90 -6.55 0.80 N 88 4 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 96.52 105.90 -9.38 0.80 N 89 4 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 102.39 108.00 -5.61 0.70 N 90 4 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.71 108.30 3.41 0.30 N 91 4 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 123.17 118.90 4.27 0.60 N 92 4 C6 A DC 11 ? ? N1 A DC 11 ? ? C2 A DC 11 ? ? 122.82 120.30 2.52 0.40 N 93 4 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 97.89 102.20 -4.31 0.70 N 94 4 "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 97.07 102.40 -5.33 0.80 N 95 4 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.64 108.30 2.34 0.30 N 96 4 "C1'" B DA 15 ? ? "O4'" B DA 15 ? ? "C4'" B DA 15 ? ? 102.65 110.10 -7.45 1.00 N 97 4 "C3'" B DA 15 ? ? "O3'" B DA 15 ? ? P B DG 16 ? ? 127.73 119.70 8.03 1.20 Y 98 4 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.18 110.10 -6.92 1.00 N 99 4 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 95.27 102.40 -7.13 0.80 N 100 4 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DG 18 ? ? 127.40 119.70 7.70 1.20 Y 101 4 "C5'" B DG 18 ? ? "C4'" B DG 18 ? ? "C3'" B DG 18 ? ? 123.40 115.70 7.70 1.20 N 102 4 "C4'" B DG 18 ? ? "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? 97.36 102.20 -4.84 0.70 N 103 4 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 110.17 108.30 1.87 0.30 N 104 4 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 112.73 108.30 4.43 0.30 N 105 4 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 119.13 122.90 -3.77 0.60 N 106 4 "C3'" B DG 21 ? ? "C2'" B DG 21 ? ? "C1'" B DG 21 ? ? 97.54 102.40 -4.86 0.80 N 107 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 99.84 105.90 -6.06 0.80 N 108 5 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DC 2 ? ? 128.42 119.70 8.72 1.20 Y 109 5 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 102.15 108.00 -5.85 0.70 N 110 5 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? "C3'" A DT 4 ? ? 126.17 115.70 10.47 1.20 N 111 5 "C3'" A DT 4 ? ? "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 97.48 102.40 -4.92 0.80 N 112 5 "C3'" A DT 4 ? ? "O3'" A DT 4 ? ? P A DC 5 ? ? 126.93 119.70 7.23 1.20 Y 113 5 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 103.06 110.10 -7.04 1.00 N 114 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 97.60 105.90 -8.30 0.80 N 115 5 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 123.13 118.90 4.23 0.60 N 116 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? "C2'" A DG 6 ? ? 100.61 105.90 -5.29 0.80 N 117 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 115.89 108.30 7.59 0.30 N 118 5 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 122.55 118.90 3.65 0.60 N 119 5 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 98.16 105.90 -7.74 0.80 N 120 5 "C3'" A DA 9 ? ? "C2'" A DA 9 ? ? "C1'" A DA 9 ? ? 97.58 102.40 -4.82 0.80 N 121 5 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 103.44 108.00 -4.56 0.70 N 122 5 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.56 108.30 2.26 0.30 N 123 5 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 122.62 118.90 3.72 0.60 N 124 5 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 96.41 102.20 -5.79 0.70 N 125 5 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 112.75 108.30 4.45 0.30 N 126 5 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? "C2'" B DT 14 ? ? 100.62 105.90 -5.28 0.80 N 127 5 C5 B DT 14 ? ? C4 B DT 14 ? ? O4 B DT 14 ? ? 129.41 124.90 4.51 0.70 N 128 5 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 123.92 119.00 4.92 0.60 N 129 5 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 115.88 122.90 -7.02 0.60 N 130 5 "C1'" B DA 15 ? ? "O4'" B DA 15 ? ? "C4'" B DA 15 ? ? 103.21 110.10 -6.89 1.00 N 131 5 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.95 110.10 -6.15 1.00 N 132 5 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? "C2'" B DG 16 ? ? 99.89 105.90 -6.01 0.80 N 133 5 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 96.70 102.40 -5.70 0.80 N 134 5 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 103.07 108.00 -4.93 0.70 N 135 5 "O4'" B DG 18 ? ? "C4'" B DG 18 ? ? "C3'" B DG 18 ? ? 99.79 104.50 -4.71 0.40 N 136 5 "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? "C1'" B DG 18 ? ? 97.55 102.40 -4.85 0.80 N 137 5 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 111.57 108.30 3.27 0.30 N 138 5 P B DA 19 ? ? "O5'" B DA 19 ? ? "C5'" B DA 19 ? ? 133.39 120.90 12.49 1.60 N 139 5 "C3'" B DA 19 ? ? "O3'" B DA 19 ? ? P B DT 20 ? ? 126.92 119.70 7.22 1.20 Y 140 5 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 112.61 108.30 4.31 0.30 N 141 6 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 97.80 102.20 -4.40 0.70 N 142 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 102.68 108.00 -5.32 0.70 N 143 6 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.87 108.30 2.57 0.30 N 144 6 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 103.75 108.00 -4.25 0.70 N 145 6 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? "C3'" A DT 4 ? ? 126.66 115.70 10.96 1.20 N 146 6 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 102.87 110.10 -7.23 1.00 N 147 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 97.06 105.90 -8.84 0.80 N 148 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.57 108.30 5.27 0.30 N 149 6 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 100.12 105.90 -5.78 0.80 N 150 6 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 98.16 105.90 -7.74 0.80 N 151 6 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.73 108.30 3.43 0.30 N 152 6 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 96.10 102.20 -6.10 0.70 N 153 6 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 111.73 108.30 3.43 0.30 N 154 6 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 112.43 108.30 4.13 0.30 N 155 6 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 110.54 108.30 2.24 0.30 N 156 6 "C1'" B DA 15 ? ? "O4'" B DA 15 ? ? "C4'" B DA 15 ? ? 103.42 110.10 -6.68 1.00 N 157 6 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? "C2'" B DG 16 ? ? 99.06 105.90 -6.84 0.80 N 158 6 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 95.91 102.40 -6.49 0.80 N 159 6 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 112.58 108.30 4.28 0.30 N 160 6 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 117.96 122.90 -4.94 0.60 N 161 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 100.49 105.90 -5.41 0.80 N 162 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.93 108.30 2.63 0.30 N 163 7 "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 97.21 102.20 -4.99 0.70 N 164 7 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.87 118.90 3.97 0.60 N 165 7 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P A DA 3 ? ? 130.54 119.70 10.84 1.20 Y 166 7 "C3'" A DT 4 ? ? "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 96.13 102.40 -6.27 0.80 N 167 7 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 100.61 105.90 -5.29 0.80 N 168 7 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? "C2'" A DG 6 ? ? 98.16 105.90 -7.74 0.80 N 169 7 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.32 108.30 4.02 0.30 N 170 7 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 122.81 118.90 3.91 0.60 N 171 7 "C1'" A DT 8 ? ? "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 104.04 110.10 -6.06 1.00 N 172 7 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 98.21 105.90 -7.69 0.80 N 173 7 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.62 108.30 2.32 0.30 N 174 7 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 103.71 108.00 -4.29 0.70 N 175 7 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.41 108.30 3.11 0.30 N 176 7 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 122.67 118.90 3.77 0.60 N 177 7 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 100.55 105.90 -5.35 0.80 N 178 7 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 114.83 108.30 6.53 0.30 N 179 7 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 118.73 122.90 -4.17 0.60 N 180 7 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 102.41 108.00 -5.59 0.70 N 181 7 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? 100.70 104.50 -3.80 0.40 N 182 7 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 102.54 110.10 -7.56 1.00 N 183 7 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 97.20 102.40 -5.20 0.80 N 184 7 "C4'" B DG 18 ? ? "C3'" B DG 18 ? ? "C2'" B DG 18 ? ? 96.71 102.20 -5.49 0.70 N 185 7 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 110.22 108.30 1.92 0.30 N 186 7 "C3'" B DG 18 ? ? "O3'" B DG 18 ? ? P B DA 19 ? ? 126.95 119.70 7.25 1.20 Y 187 7 "C5'" B DT 20 ? ? "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? 125.36 115.70 9.66 1.20 N 188 7 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? 97.08 102.20 -5.12 0.70 N 189 7 "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? "C1'" B DT 20 ? ? 97.07 102.40 -5.33 0.80 N 190 7 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 118.04 122.90 -4.86 0.60 N 191 7 "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? P B DG 21 ? ? 129.34 119.70 9.64 1.20 Y 192 7 "C3'" B DG 21 ? ? "O3'" B DG 21 ? ? P B DG 22 ? ? 129.77 119.70 10.07 1.20 Y 193 8 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 96.53 102.20 -5.67 0.70 N 194 8 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 96.49 102.40 -5.91 0.80 N 195 8 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? "C2'" A DC 2 ? ? 101.07 105.90 -4.83 0.80 N 196 8 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 100.15 110.10 -9.95 1.00 N 197 8 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 97.45 102.40 -4.95 0.80 N 198 8 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? "C2'" A DG 6 ? ? 100.41 105.90 -5.49 0.80 N 199 8 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 113.46 108.30 5.16 0.30 N 200 8 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 99.04 105.90 -6.86 0.80 N 201 8 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 98.36 105.90 -7.54 0.80 N 202 8 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 103.55 108.00 -4.45 0.70 N 203 8 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.86 108.30 4.56 0.30 N 204 8 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 102.01 104.50 -2.49 0.40 N 205 8 "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 96.88 102.40 -5.52 0.80 N 206 8 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? "C2'" B DG 13 ? ? 100.15 105.90 -5.75 0.80 N 207 8 "C1'" B DA 15 ? ? "O4'" B DA 15 ? ? "C4'" B DA 15 ? ? 102.65 110.10 -7.45 1.00 N 208 8 "C3'" B DA 15 ? ? "O3'" B DA 15 ? ? P B DG 16 ? ? 128.12 119.70 8.42 1.20 Y 209 8 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? 99.31 104.50 -5.19 0.40 N 210 8 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.85 108.30 3.55 0.30 N 211 8 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 97.38 102.40 -5.02 0.80 N 212 8 "C3'" B DA 19 ? ? "O3'" B DA 19 ? ? P B DT 20 ? ? 127.35 119.70 7.65 1.20 Y 213 8 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? 97.71 102.20 -4.49 0.70 N 214 8 N3 B DT 20 ? ? C2 B DT 20 ? ? O2 B DT 20 ? ? 118.24 122.30 -4.06 0.60 N 215 8 "C3'" B DG 21 ? ? "C2'" B DG 21 ? ? "C1'" B DG 21 ? ? 96.74 102.40 -5.66 0.80 N 216 8 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 96.88 102.40 -5.52 0.80 N 217 8 N1 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 115.76 119.90 -4.14 0.60 N 218 8 C5 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 132.74 128.60 4.14 0.60 N 219 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 103.37 108.00 -4.63 0.70 N 220 9 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DC 2 ? ? 129.82 119.70 10.12 1.20 Y 221 9 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.58 108.30 3.28 0.30 N 222 9 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 102.19 108.00 -5.81 0.70 N 223 9 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 100.88 105.90 -5.02 0.80 N 224 9 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.30 108.30 3.00 0.30 N 225 9 P A DC 7 ? ? "O5'" A DC 7 ? ? "C5'" A DC 7 ? ? 131.67 120.90 10.77 1.60 N 226 9 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 99.35 108.00 -8.65 0.70 N 227 9 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 101.05 105.90 -4.85 0.80 N 228 9 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 101.87 108.00 -6.13 0.70 N 229 9 C5 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 129.27 124.90 4.37 0.70 N 230 9 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 102.21 108.00 -5.79 0.70 N 231 9 "C3'" A DC 10 ? ? "C2'" A DC 10 ? ? "C1'" A DC 10 ? ? 96.87 102.40 -5.53 0.80 N 232 9 "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 96.63 102.20 -5.57 0.70 N 233 9 "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 95.32 102.40 -7.08 0.80 N 234 9 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 110.36 108.30 2.06 0.30 N 235 9 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? 96.98 104.50 -7.52 0.40 N 236 9 "C1'" B DG 16 ? ? "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 102.82 110.10 -7.28 1.00 N 237 9 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 126.95 119.70 7.25 1.20 Y 238 9 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 102.04 108.00 -5.96 0.70 N 239 9 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 110.43 108.30 2.13 0.30 N 240 9 "C3'" B DG 18 ? ? "O3'" B DG 18 ? ? P B DA 19 ? ? 127.91 119.70 8.21 1.20 Y 241 9 P B DA 19 ? ? "O5'" B DA 19 ? ? "C5'" B DA 19 ? ? 131.09 120.90 10.19 1.60 N 242 9 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 101.41 108.00 -6.59 0.70 N 243 9 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? "C2'" B DG 21 ? ? 99.81 105.90 -6.09 0.80 N # _pdbx_nmr_ensemble.entry_id 1AXU _pdbx_nmr_ensemble.conformers_calculated_total_number 24 _pdbx_nmr_ensemble.conformers_submitted_total_number 9 _pdbx_nmr_ensemble.conformer_selection_criteria 'THE BEST TOTAL ENERGY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 322 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 3 1 TOCSY 1 4 1 DQF-COSY 1 # _pdbx_nmr_refine.entry_id 1AXU _pdbx_nmr_refine.method 'RELAXATION MATRIX REFINEMENT' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' VNMR ? ? 2 'structure solution' DUPLEX ? ? 3 'structure solution' X-PLOR ? ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AP N1 N N N 1 AP C1 C Y N 2 AP C2 C Y N 3 AP C3 C Y N 4 AP C3A C Y N 5 AP C4 C Y N 6 AP C5 C Y N 7 AP C5A C Y N 8 AP C6 C Y N 9 AP C7 C Y N 10 AP C8 C Y N 11 AP C8A C Y N 12 AP C9 C Y N 13 AP C10 C Y N 14 AP C1A C Y N 15 AP C11 C Y N 16 AP C12 C Y N 17 AP HN1 H N N 18 AP HN2 H N N 19 AP H2 H N N 20 AP H3 H N N 21 AP H4 H N N 22 AP H5 H N N 23 AP H6 H N N 24 AP H7 H N N 25 AP H8 H N N 26 AP H9 H N N 27 AP H10 H N N 28 DA OP3 O N N 29 DA P P N N 30 DA OP1 O N N 31 DA OP2 O N N 32 DA "O5'" O N N 33 DA "C5'" C N N 34 DA "C4'" C N R 35 DA "O4'" O N N 36 DA "C3'" C N S 37 DA "O3'" O N N 38 DA "C2'" C N N 39 DA "C1'" C N R 40 DA N9 N Y N 41 DA C8 C Y N 42 DA N7 N Y N 43 DA C5 C Y N 44 DA C6 C Y N 45 DA N6 N N N 46 DA N1 N Y N 47 DA C2 C Y N 48 DA N3 N Y N 49 DA C4 C Y N 50 DA HOP3 H N N 51 DA HOP2 H N N 52 DA "H5'" H N N 53 DA "H5''" H N N 54 DA "H4'" H N N 55 DA "H3'" H N N 56 DA "HO3'" H N N 57 DA "H2'" H N N 58 DA "H2''" H N N 59 DA "H1'" H N N 60 DA H8 H N N 61 DA H61 H N N 62 DA H62 H N N 63 DA H2 H N N 64 DC OP3 O N N 65 DC P P N N 66 DC OP1 O N N 67 DC OP2 O N N 68 DC "O5'" O N N 69 DC "C5'" C N N 70 DC "C4'" C N R 71 DC "O4'" O N N 72 DC "C3'" C N S 73 DC "O3'" O N N 74 DC "C2'" C N N 75 DC "C1'" C N R 76 DC N1 N N N 77 DC C2 C N N 78 DC O2 O N N 79 DC N3 N N N 80 DC C4 C N N 81 DC N4 N N N 82 DC C5 C N N 83 DC C6 C N N 84 DC HOP3 H N N 85 DC HOP2 H N N 86 DC "H5'" H N N 87 DC "H5''" H N N 88 DC "H4'" H N N 89 DC "H3'" H N N 90 DC "HO3'" H N N 91 DC "H2'" H N N 92 DC "H2''" H N N 93 DC "H1'" H N N 94 DC H41 H N N 95 DC H42 H N N 96 DC H5 H N N 97 DC H6 H N N 98 DG OP3 O N N 99 DG P P N N 100 DG OP1 O N N 101 DG OP2 O N N 102 DG "O5'" O N N 103 DG "C5'" C N N 104 DG "C4'" C N R 105 DG "O4'" O N N 106 DG "C3'" C N S 107 DG "O3'" O N N 108 DG "C2'" C N N 109 DG "C1'" C N R 110 DG N9 N Y N 111 DG C8 C Y N 112 DG N7 N Y N 113 DG C5 C Y N 114 DG C6 C N N 115 DG O6 O N N 116 DG N1 N N N 117 DG C2 C N N 118 DG N2 N N N 119 DG N3 N N N 120 DG C4 C Y N 121 DG HOP3 H N N 122 DG HOP2 H N N 123 DG "H5'" H N N 124 DG "H5''" H N N 125 DG "H4'" H N N 126 DG "H3'" H N N 127 DG "HO3'" H N N 128 DG "H2'" H N N 129 DG "H2''" H N N 130 DG "H1'" H N N 131 DG H8 H N N 132 DG H1 H N N 133 DG H21 H N N 134 DG H22 H N N 135 DT OP3 O N N 136 DT P P N N 137 DT OP1 O N N 138 DT OP2 O N N 139 DT "O5'" O N N 140 DT "C5'" C N N 141 DT "C4'" C N R 142 DT "O4'" O N N 143 DT "C3'" C N S 144 DT "O3'" O N N 145 DT "C2'" C N N 146 DT "C1'" C N R 147 DT N1 N N N 148 DT C2 C N N 149 DT O2 O N N 150 DT N3 N N N 151 DT C4 C N N 152 DT O4 O N N 153 DT C5 C N N 154 DT C7 C N N 155 DT C6 C N N 156 DT HOP3 H N N 157 DT HOP2 H N N 158 DT "H5'" H N N 159 DT "H5''" H N N 160 DT "H4'" H N N 161 DT "H3'" H N N 162 DT "HO3'" H N N 163 DT "H2'" H N N 164 DT "H2''" H N N 165 DT "H1'" H N N 166 DT H3 H N N 167 DT H71 H N N 168 DT H72 H N N 169 DT H73 H N N 170 DT H6 H N N 171 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AP N1 C1 sing N N 1 AP N1 HN1 sing N N 2 AP N1 HN2 sing N N 3 AP C1 C2 doub Y N 4 AP C1 C1A sing Y N 5 AP C2 C3 sing Y N 6 AP C2 H2 sing N N 7 AP C3 C3A doub Y N 8 AP C3 H3 sing N N 9 AP C3A C4 sing Y N 10 AP C3A C11 sing Y N 11 AP C4 C5 doub Y N 12 AP C4 H4 sing N N 13 AP C5 C5A sing Y N 14 AP C5 H5 sing N N 15 AP C5A C6 doub Y N 16 AP C5A C12 sing Y N 17 AP C6 C7 sing Y N 18 AP C6 H6 sing N N 19 AP C7 C8 doub Y N 20 AP C7 H7 sing N N 21 AP C8 C8A sing Y N 22 AP C8 H8 sing N N 23 AP C8A C9 doub Y N 24 AP C8A C12 sing Y N 25 AP C9 C10 sing Y N 26 AP C9 H9 sing N N 27 AP C10 C1A doub Y N 28 AP C10 H10 sing N N 29 AP C1A C11 sing Y N 30 AP C11 C12 doub Y N 31 DA OP3 P sing N N 32 DA OP3 HOP3 sing N N 33 DA P OP1 doub N N 34 DA P OP2 sing N N 35 DA P "O5'" sing N N 36 DA OP2 HOP2 sing N N 37 DA "O5'" "C5'" sing N N 38 DA "C5'" "C4'" sing N N 39 DA "C5'" "H5'" sing N N 40 DA "C5'" "H5''" sing N N 41 DA "C4'" "O4'" sing N N 42 DA "C4'" "C3'" sing N N 43 DA "C4'" "H4'" sing N N 44 DA "O4'" "C1'" sing N N 45 DA "C3'" "O3'" sing N N 46 DA "C3'" "C2'" sing N N 47 DA "C3'" "H3'" sing N N 48 DA "O3'" "HO3'" sing N N 49 DA "C2'" "C1'" sing N N 50 DA "C2'" "H2'" sing N N 51 DA "C2'" "H2''" sing N N 52 DA "C1'" N9 sing N N 53 DA "C1'" "H1'" sing N N 54 DA N9 C8 sing Y N 55 DA N9 C4 sing Y N 56 DA C8 N7 doub Y N 57 DA C8 H8 sing N N 58 DA N7 C5 sing Y N 59 DA C5 C6 sing Y N 60 DA C5 C4 doub Y N 61 DA C6 N6 sing N N 62 DA C6 N1 doub Y N 63 DA N6 H61 sing N N 64 DA N6 H62 sing N N 65 DA N1 C2 sing Y N 66 DA C2 N3 doub Y N 67 DA C2 H2 sing N N 68 DA N3 C4 sing Y N 69 DC OP3 P sing N N 70 DC OP3 HOP3 sing N N 71 DC P OP1 doub N N 72 DC P OP2 sing N N 73 DC P "O5'" sing N N 74 DC OP2 HOP2 sing N N 75 DC "O5'" "C5'" sing N N 76 DC "C5'" "C4'" sing N N 77 DC "C5'" "H5'" sing N N 78 DC "C5'" "H5''" sing N N 79 DC "C4'" "O4'" sing N N 80 DC "C4'" "C3'" sing N N 81 DC "C4'" "H4'" sing N N 82 DC "O4'" "C1'" sing N N 83 DC "C3'" "O3'" sing N N 84 DC "C3'" "C2'" sing N N 85 DC "C3'" "H3'" sing N N 86 DC "O3'" "HO3'" sing N N 87 DC "C2'" "C1'" sing N N 88 DC "C2'" "H2'" sing N N 89 DC "C2'" "H2''" sing N N 90 DC "C1'" N1 sing N N 91 DC "C1'" "H1'" sing N N 92 DC N1 C2 sing N N 93 DC N1 C6 sing N N 94 DC C2 O2 doub N N 95 DC C2 N3 sing N N 96 DC N3 C4 doub N N 97 DC C4 N4 sing N N 98 DC C4 C5 sing N N 99 DC N4 H41 sing N N 100 DC N4 H42 sing N N 101 DC C5 C6 doub N N 102 DC C5 H5 sing N N 103 DC C6 H6 sing N N 104 DG OP3 P sing N N 105 DG OP3 HOP3 sing N N 106 DG P OP1 doub N N 107 DG P OP2 sing N N 108 DG P "O5'" sing N N 109 DG OP2 HOP2 sing N N 110 DG "O5'" "C5'" sing N N 111 DG "C5'" "C4'" sing N N 112 DG "C5'" "H5'" sing N N 113 DG "C5'" "H5''" sing N N 114 DG "C4'" "O4'" sing N N 115 DG "C4'" "C3'" sing N N 116 DG "C4'" "H4'" sing N N 117 DG "O4'" "C1'" sing N N 118 DG "C3'" "O3'" sing N N 119 DG "C3'" "C2'" sing N N 120 DG "C3'" "H3'" sing N N 121 DG "O3'" "HO3'" sing N N 122 DG "C2'" "C1'" sing N N 123 DG "C2'" "H2'" sing N N 124 DG "C2'" "H2''" sing N N 125 DG "C1'" N9 sing N N 126 DG "C1'" "H1'" sing N N 127 DG N9 C8 sing Y N 128 DG N9 C4 sing Y N 129 DG C8 N7 doub Y N 130 DG C8 H8 sing N N 131 DG N7 C5 sing Y N 132 DG C5 C6 sing N N 133 DG C5 C4 doub Y N 134 DG C6 O6 doub N N 135 DG C6 N1 sing N N 136 DG N1 C2 sing N N 137 DG N1 H1 sing N N 138 DG C2 N2 sing N N 139 DG C2 N3 doub N N 140 DG N2 H21 sing N N 141 DG N2 H22 sing N N 142 DG N3 C4 sing N N 143 DT OP3 P sing N N 144 DT OP3 HOP3 sing N N 145 DT P OP1 doub N N 146 DT P OP2 sing N N 147 DT P "O5'" sing N N 148 DT OP2 HOP2 sing N N 149 DT "O5'" "C5'" sing N N 150 DT "C5'" "C4'" sing N N 151 DT "C5'" "H5'" sing N N 152 DT "C5'" "H5''" sing N N 153 DT "C4'" "O4'" sing N N 154 DT "C4'" "C3'" sing N N 155 DT "C4'" "H4'" sing N N 156 DT "O4'" "C1'" sing N N 157 DT "C3'" "O3'" sing N N 158 DT "C3'" "C2'" sing N N 159 DT "C3'" "H3'" sing N N 160 DT "O3'" "HO3'" sing N N 161 DT "C2'" "C1'" sing N N 162 DT "C2'" "H2'" sing N N 163 DT "C2'" "H2''" sing N N 164 DT "C1'" N1 sing N N 165 DT "C1'" "H1'" sing N N 166 DT N1 C2 sing N N 167 DT N1 C6 sing N N 168 DT C2 O2 doub N N 169 DT C2 N3 sing N N 170 DT N3 C4 sing N N 171 DT N3 H3 sing N N 172 DT C4 O4 doub N N 173 DT C4 C5 sing N N 174 DT C5 C7 sing N N 175 DT C5 C6 doub N N 176 DT C7 H71 sing N N 177 DT C7 H72 sing N N 178 DT C7 H73 sing N N 179 DT C6 H6 sing N N 180 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1AXU 'double helix' 1AXU 'b-form double helix' 1AXU 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.815 -0.464 0.575 -6.265 1.689 -2.157 1 A_DC1:DG22_B A 1 ? B 22 ? 19 1 1 A DC 2 1_555 B DG 10 1_555 1.050 -0.378 -0.098 9.562 0.832 2.015 2 A_DC2:DG21_B A 2 ? B 21 ? 19 1 1 A DA 3 1_555 B DT 9 1_555 0.397 -0.111 -0.525 -12.041 -12.482 2.878 3 A_DA3:DT20_B A 3 ? B 20 ? 20 1 1 A DT 4 1_555 B DA 8 1_555 0.192 -0.236 -0.762 3.353 -20.272 2.565 4 A_DT4:DA19_B A 4 ? B 19 ? 20 1 1 A DC 5 1_555 B DG 7 1_555 0.865 -0.217 0.081 -29.350 -2.758 3.134 5 A_DC5:DG18_B A 5 ? B 18 ? 19 1 1 A DC 7 1_555 B DG 5 1_555 1.006 -0.389 0.677 -33.970 -8.341 -0.259 6 A_DC7:DG16_B A 7 ? B 16 ? 19 1 1 A DT 8 1_555 B DA 4 1_555 -0.468 -0.109 0.604 -2.704 -3.647 11.115 7 A_DT8:DA15_B A 8 ? B 15 ? 20 1 1 A DA 9 1_555 B DT 3 1_555 0.158 -0.068 0.111 17.635 -2.016 6.904 8 A_DA9:DT14_B A 9 ? B 14 ? 20 1 1 A DC 10 1_555 B DG 2 1_555 0.900 -0.359 -0.424 17.458 -15.915 -0.405 9 A_DC10:DG13_B A 10 ? B 13 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 0.954 -0.417 -0.086 -1.514 14.229 0.100 10 A_DC11:DG12_B A 11 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DC 2 1_555 B DG 10 1_555 0.766 -0.004 2.837 2.524 -7.386 43.496 0.600 -0.813 2.838 -9.872 -3.373 44.158 1 AA_DC1DC2:DG21DG22_BB A 1 ? B 22 ? A 2 ? B 21 ? 1 A DC 2 1_555 B DG 10 1_555 A DA 3 1_555 B DT 9 1_555 -0.500 -0.884 3.513 9.209 18.715 36.219 -3.233 1.681 2.583 27.484 -13.524 41.621 2 AA_DC2DA3:DT20DG21_BB A 2 ? B 21 ? A 3 ? B 20 ? 1 A DA 3 1_555 B DT 9 1_555 A DT 4 1_555 B DA 8 1_555 0.059 0.370 2.588 2.029 4.937 36.314 0.048 0.128 2.614 7.869 -3.234 36.691 3 AA_DA3DT4:DA19DT20_BB A 3 ? B 20 ? A 4 ? B 19 ? 1 A DT 4 1_555 B DA 8 1_555 A DC 5 1_555 B DG 7 1_555 0.738 -0.043 5.942 -10.958 7.740 34.512 -1.935 -3.808 5.341 12.478 17.665 36.953 4 AA_DT4DC5:DG18DA19_BB A 4 ? B 19 ? A 5 ? B 18 ? 1 A DC 5 1_555 B DG 7 1_555 A DC 7 1_555 B DG 5 1_555 -1.233 -2.623 6.757 7.331 -1.800 50.308 -2.796 2.491 6.613 -2.104 -8.568 50.834 5 AA_DC5DC7:DG16DG18_BB A 5 ? B 18 ? A 7 ? B 16 ? 1 A DC 7 1_555 B DG 5 1_555 A DT 8 1_555 B DA 4 1_555 2.094 -0.084 2.506 0.921 -1.456 30.979 0.060 -3.777 2.567 -2.723 -1.723 31.025 6 AA_DC7DT8:DA15DG16_BB A 7 ? B 16 ? A 8 ? B 15 ? 1 A DT 8 1_555 B DA 4 1_555 A DA 9 1_555 B DT 3 1_555 -0.954 -0.878 2.517 2.292 3.028 26.711 -2.457 2.480 2.317 6.513 -4.930 26.975 7 AA_DT8DA9:DT14DA15_BB A 8 ? B 15 ? A 9 ? B 14 ? 1 A DA 9 1_555 B DT 3 1_555 A DC 10 1_555 B DG 2 1_555 -0.152 -0.069 3.447 3.453 -4.699 39.701 0.464 0.637 3.409 -6.874 -5.051 40.110 8 AA_DA9DC10:DG13DT14_BB A 9 ? B 14 ? A 10 ? B 13 ? 1 A DC 10 1_555 B DG 2 1_555 A DC 11 1_555 B DG 1 1_555 0.399 -1.580 3.964 0.650 10.741 36.422 -4.009 -0.519 3.387 16.740 -1.012 37.927 9 AA_DC10DC11:DG12DG13_BB A 10 ? B 13 ? A 11 ? B 12 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 'VARIAN UNITY PLUS' Varian 500 2 'VARIAN UNITY PLUS' Varian 600 # _atom_sites.entry_id 1AXU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_