data_1AY2 # _entry.id 1AY2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.366 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AY2 pdb_00001ay2 10.2210/pdb1ay2/pdb WWPDB D_1000171396 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AY2 _pdbx_database_status.recvd_initial_deposition_date 1997-11-13 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Forest, K.T.' 1 'Parge, H.E.' 2 'Tainer, J.A.' 3 # _citation.id primary _citation.title 'Structure of the fibre-forming protein pilin at 2.6 A resolution.' _citation.journal_abbrev Nature _citation.journal_volume 378 _citation.page_first 32 _citation.page_last 38 _citation.year 1995 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7477282 _citation.pdbx_database_id_DOI 10.1038/378032a0 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Parge, H.E.' 1 ? primary 'Forest, K.T.' 2 ? primary 'Hickey, M.J.' 3 ? primary 'Christensen, D.A.' 4 ? primary 'Getzoff, E.D.' 5 ? primary 'Tainer, J.A.' 6 ? # _cell.entry_id 1AY2 _cell.length_a 127.580 _cell.length_b 121.080 _cell.length_c 26.860 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1AY2 _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'TYPE 4 PILIN' 17192.477 1 ? ? ? ? 2 branched man 'alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose' 383.349 1 ? ? ? ? 3 non-polymer syn 'PLATINUM (II) ION' 195.078 1 ? ? ? ? 4 non-polymer syn HEPTANE-1,2,3-TRIOL 148.200 1 ? ? ? ? 5 water nat water 18.015 129 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name FIMBRIAE # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;FTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTSAGVASPPSDIKGKYVKE VEVKNGVVTATMLSSGVNNEIKGKKLSLWARRENGSVKWFCGQPVTRTDDDTVADAKDGKEIDTKHLPSTCRDNFDAK ; _entity_poly.pdbx_seq_one_letter_code_can ;FTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTSAGVASPPSDIKGKYVKE VEVKNGVVTATMLSSGVNNEIKGKKLSLWARRENGSVKWFCGQPVTRTDDDTVADAKDGKEIDTKHLPSTCRDNFDAK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 THR n 1 3 LEU n 1 4 ILE n 1 5 GLU n 1 6 LEU n 1 7 MET n 1 8 ILE n 1 9 VAL n 1 10 ILE n 1 11 ALA n 1 12 ILE n 1 13 VAL n 1 14 GLY n 1 15 ILE n 1 16 LEU n 1 17 ALA n 1 18 ALA n 1 19 VAL n 1 20 ALA n 1 21 LEU n 1 22 PRO n 1 23 ALA n 1 24 TYR n 1 25 GLN n 1 26 ASP n 1 27 TYR n 1 28 THR n 1 29 ALA n 1 30 ARG n 1 31 ALA n 1 32 GLN n 1 33 VAL n 1 34 SER n 1 35 GLU n 1 36 ALA n 1 37 ILE n 1 38 LEU n 1 39 LEU n 1 40 ALA n 1 41 GLU n 1 42 GLY n 1 43 GLN n 1 44 LYS n 1 45 SER n 1 46 ALA n 1 47 VAL n 1 48 THR n 1 49 GLU n 1 50 TYR n 1 51 TYR n 1 52 LEU n 1 53 ASN n 1 54 HIS n 1 55 GLY n 1 56 LYS n 1 57 TRP n 1 58 PRO n 1 59 GLU n 1 60 ASN n 1 61 ASN n 1 62 THR n 1 63 SER n 1 64 ALA n 1 65 GLY n 1 66 VAL n 1 67 ALA n 1 68 SER n 1 69 PRO n 1 70 PRO n 1 71 SER n 1 72 ASP n 1 73 ILE n 1 74 LYS n 1 75 GLY n 1 76 LYS n 1 77 TYR n 1 78 VAL n 1 79 LYS n 1 80 GLU n 1 81 VAL n 1 82 GLU n 1 83 VAL n 1 84 LYS n 1 85 ASN n 1 86 GLY n 1 87 VAL n 1 88 VAL n 1 89 THR n 1 90 ALA n 1 91 THR n 1 92 MET n 1 93 LEU n 1 94 SER n 1 95 SER n 1 96 GLY n 1 97 VAL n 1 98 ASN n 1 99 ASN n 1 100 GLU n 1 101 ILE n 1 102 LYS n 1 103 GLY n 1 104 LYS n 1 105 LYS n 1 106 LEU n 1 107 SER n 1 108 LEU n 1 109 TRP n 1 110 ALA n 1 111 ARG n 1 112 ARG n 1 113 GLU n 1 114 ASN n 1 115 GLY n 1 116 SER n 1 117 VAL n 1 118 LYS n 1 119 TRP n 1 120 PHE n 1 121 CYS n 1 122 GLY n 1 123 GLN n 1 124 PRO n 1 125 VAL n 1 126 THR n 1 127 ARG n 1 128 THR n 1 129 ASP n 1 130 ASP n 1 131 ASP n 1 132 THR n 1 133 VAL n 1 134 ALA n 1 135 ASP n 1 136 ALA n 1 137 LYS n 1 138 ASP n 1 139 GLY n 1 140 LYS n 1 141 GLU n 1 142 ILE n 1 143 ASP n 1 144 THR n 1 145 LYS n 1 146 HIS n 1 147 LEU n 1 148 PRO n 1 149 SER n 1 150 THR n 1 151 CYS n 1 152 ARG n 1 153 ASP n 1 154 ASN n 1 155 PHE n 1 156 ASP n 1 157 ALA n 1 158 LYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Neisseria gonorrhoeae' _entity_src_nat.pdbx_ncbi_taxonomy_id 485 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain MS11 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location EXTRACELLULAR _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle PILUS _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FMM1_NEIGO _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P02974 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTSAGVASPPSDI KGKYVKEVEVKNGVVTATMLSSGVNNEIKGKKLSLWARRENGSVKWFCGQPVTRTDDDTVADAKDGKEIDTKHLPSTCRD NFDAK ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1AY2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 158 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02974 _struct_ref_seq.db_align_beg 8 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 165 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 158 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLA 'D-saccharide, alpha linking' . alpha-D-galactopyranose 'alpha-D-galactose; D-galactose; galactose; ALPHA D-GALACTOSE' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 HTO non-polymer . HEPTANE-1,2,3-TRIOL ? 'C7 H16 O3' 148.200 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PT non-polymer . 'PLATINUM (II) ION' ? 'Pt 2' 195.078 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1AY2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.16 _exptl_crystal.density_percent_sol 60. _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PROTEIN WAS CRYSTALLIZED FROM 60% PEG400, 50 MM CHESS, PH 8.0, 1% BETA-OCTYL GLUCOSIDE, 0.6% 1,2,3-HEPTANETRIOL.' # _diffrn.id 1 _diffrn.ambient_temp 290 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1993-05 _diffrn_detector.details 'BENT MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.07 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength 1.07 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AY2 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 24.0 _reflns.d_resolution_high 2.6 _reflns.number_obs 6494 _reflns.number_all ? _reflns.percent_possible_obs 95. _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.081 _reflns.pdbx_netI_over_sigmaI 6.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.6 _reflns_shell.d_res_low 2.78 _reflns_shell.percent_possible_all 80.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.307 _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy 4.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1AY2 _refine.ls_number_reflns_obs 6565 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 100000.0 _refine.pdbx_data_cutoff_low_absF 0.1 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 2.6 _refine.ls_percent_reflns_obs 95.0 _refine.ls_R_factor_obs 0.194 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.194 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 30. _refine.aniso_B[1][1] -4.25 _refine.aniso_B[2][2] 8.25 _refine.aniso_B[3][3] -4.00 _refine.aniso_B[1][2] 0.0 _refine.aniso_B[1][3] 0.0 _refine.aniso_B[2][3] 0.0 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;SOLVENT FLATTENING (WITH 50%) SOLVENT) USING PHASES WAS USED TO IMPROVE PHASES (F.O.M. INCREASED FROM 0.75 - 0.86) FOR FITTING. DATA FROM A PT-SOAKED DERIVATIVE CRYSTAL WAS USED FOR REFINEMENT BECAUSE IT WAS STRONGER THAN "NATIVE" DATA. THE EXPECTED N-TERMINAL METHYL-PHE WAS VERIFIED BY N-TERMINAL SEQUENCING BUT WAS NOT INCLUDED IN THE MODEL BECAUSE IT WAS NOT APPARENT IN ELECTRON DENSITY. WATERS WERE NOT RESTRAINED DURING REFINEMENT AND TWO WATERS (333 AND 348) MOVED CLOSE TO THE PT SITE. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1AY2 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 10.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1208 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 129 _refine_hist.number_atoms_total 1373 _refine_hist.d_res_high 2.6 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.017 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.5 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.359 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? 1.5 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? 2.0 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? 2.0 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? 2.5 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.72 _refine_ls_shell.number_reflns_R_work 723 _refine_ls_shell.R_factor_R_work 0.324 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARAM19X.PRO TOPH19X.PRO 'X-RAY DIFFRACTION' 2 PARAM_AUX.PRO TOPH3.CHO 'X-RAY DIFFRACTION' 3 PARAM3_MOD.CHO HEPT123.TOP 'X-RAY DIFFRACTION' 4 ? TOPH19.PEP 'X-RAY DIFFRACTION' # _struct.entry_id 1AY2 _struct.title 'STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AY2 _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'TYPE IV PILIN, FIBER-FORMING PROTEIN, MEMBRANE PROTEIN, DNA INDING PROTEIN, CONTRACTILE PROTEIN, CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 2 ? HIS A 54 ? THR A 2 HIS A 54 1 ? 53 HELX_P HELX_P2 2 ASN A 60 ? ALA A 64 ? ASN A 60 ALA A 64 1 ? 5 HELX_P HELX_P3 3 PRO A 69 ? ASP A 72 ? PRO A 69 ASP A 72 5 ? 4 HELX_P HELX_P4 4 ASN A 99 ? LYS A 102 ? ASN A 99 LYS A 102 5 ? 4 HELX_P HELX_P5 5 THR A 144 ? HIS A 146 ? THR A 144 HIS A 146 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 121 SG ? ? ? 1_555 A CYS 151 SG ? ? A CYS 121 A CYS 151 1_555 ? ? ? ? ? ? ? 2.010 ? ? covale1 covale both ? A PHE 1 C ? ? ? 1_555 A THR 2 N ? ? A PHE 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.396 ? ? covale2 covale one ? A SER 63 OG ? ? ? 1_555 B NAG . C1 ? ? A SER 63 B NAG 1 1_555 ? ? ? ? ? ? ? 1.397 ? O-Glycosylation covale3 covale both ? B NAG . O3 ? ? ? 1_555 B GLA . C1 ? ? B NAG 1 B GLA 2 1_555 ? ? ? ? ? ? ? 1.396 ? ? metalc1 metalc ? ? A HIS 54 NE2 ? ? ? 1_555 C PT . PT ? ? A HIS 54 A PT 200 1_555 ? ? ? ? ? ? ? 3.381 ? ? metalc2 metalc ? ? A HIS 54 NE2 ? ? ? 4_566 C PT . PT ? ? A HIS 54 A PT 200 1_555 ? ? ? ? ? ? ? 3.383 ? ? metalc3 metalc ? ? C PT . PT ? ? ? 1_555 E HOH . O ? ? A PT 200 A HOH 333 1_555 ? ? ? ? ? ? ? 1.651 ? ? metalc4 metalc ? ? C PT . PT ? ? ? 1_555 E HOH . O ? ? A PT 200 A HOH 333 4_566 ? ? ? ? ? ? ? 1.651 ? ? metalc5 metalc ? ? C PT . PT ? ? ? 1_555 E HOH . O ? ? A PT 200 A HOH 348 1_555 ? ? ? ? ? ? ? 1.630 ? ? metalc6 metalc ? ? C PT . PT ? ? ? 1_555 E HOH . O ? ? A PT 200 A HOH 348 4_566 ? ? ? ? ? ? ? 1.628 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 116 ? GLN A 123 ? SER A 116 GLN A 123 A 2 LYS A 105 ? GLU A 113 ? LYS A 105 GLU A 113 A 3 VAL A 87 ? MET A 92 ? VAL A 87 MET A 92 A 4 VAL A 78 ? LYS A 84 ? VAL A 78 LYS A 84 B 1 VAL A 125 ? ASP A 129 ? VAL A 125 ASP A 129 B 2 THR A 132 ? ASP A 135 ? THR A 132 ASP A 135 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 116 ? O SER A 116 N GLU A 113 ? N GLU A 113 A 2 3 O LEU A 106 ? O LEU A 106 N ALA A 90 ? N ALA A 90 A 3 4 O VAL A 87 ? O VAL A 87 N LYS A 84 ? N LYS A 84 B 1 2 O THR A 126 ? O THR A 126 N ALA A 134 ? N ALA A 134 # _database_PDB_matrix.entry_id 1AY2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1AY2 _atom_sites.fract_transf_matrix[1][1] 0.007838 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008259 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.037230 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O PT S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 1 1 PHE PHE A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 MET 7 7 7 MET MET A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 TRP 57 57 57 TRP TRP A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 MET 92 92 92 MET MET A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 TRP 109 109 109 TRP TRP A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 TRP 119 119 119 TRP TRP A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 CYS 121 121 121 CYS CYS A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 THR 126 126 126 THR THR A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 THR 128 128 128 THR THR A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 ASP 130 130 130 ASP ASP A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 ASP 138 138 138 ASP ASP A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 ASP 143 143 143 ASP ASP A . n A 1 144 THR 144 144 144 THR THR A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 HIS 146 146 146 HIS HIS A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 THR 150 150 150 THR THR A . n A 1 151 CYS 151 151 151 CYS CYS A . n A 1 152 ARG 152 152 152 ARG ARG A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 ASN 154 154 154 ASN ASN A . n A 1 155 PHE 155 155 155 PHE PHE A . n A 1 156 ASP 156 156 156 ASP ASP A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 LYS 158 158 158 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PT 1 200 200 PT PT A . D 4 HTO 1 162 162 HTO HTO A . E 5 HOH 1 301 301 HOH HOH A . E 5 HOH 2 303 303 HOH HOH A . E 5 HOH 3 307 307 HOH HOH A . E 5 HOH 4 308 308 HOH HOH A . E 5 HOH 5 310 310 HOH HOH A . E 5 HOH 6 311 311 HOH HOH A . E 5 HOH 7 314 314 HOH HOH A . E 5 HOH 8 315 315 HOH HOH A . E 5 HOH 9 317 317 HOH HOH A . E 5 HOH 10 322 322 HOH HOH A . E 5 HOH 11 323 323 HOH HOH A . E 5 HOH 12 324 324 HOH HOH A . E 5 HOH 13 325 325 HOH HOH A . E 5 HOH 14 326 326 HOH HOH A . E 5 HOH 15 328 328 HOH HOH A . E 5 HOH 16 333 333 HOH HOH A . E 5 HOH 17 334 334 HOH HOH A . E 5 HOH 18 335 335 HOH HOH A . E 5 HOH 19 336 336 HOH HOH A . E 5 HOH 20 338 338 HOH HOH A . E 5 HOH 21 340 340 HOH HOH A . E 5 HOH 22 341 341 HOH HOH A . E 5 HOH 23 343 343 HOH HOH A . E 5 HOH 24 344 344 HOH HOH A . E 5 HOH 25 345 345 HOH HOH A . E 5 HOH 26 346 346 HOH HOH A . E 5 HOH 27 347 347 HOH HOH A . E 5 HOH 28 348 348 HOH HOH A . E 5 HOH 29 352 352 HOH HOH A . E 5 HOH 30 353 353 HOH HOH A . E 5 HOH 31 354 354 HOH HOH A . E 5 HOH 32 355 355 HOH HOH A . E 5 HOH 33 356 356 HOH HOH A . E 5 HOH 34 357 357 HOH HOH A . E 5 HOH 35 358 358 HOH HOH A . E 5 HOH 36 359 359 HOH HOH A . E 5 HOH 37 361 361 HOH HOH A . E 5 HOH 38 362 362 HOH HOH A . E 5 HOH 39 364 364 HOH HOH A . E 5 HOH 40 365 365 HOH HOH A . E 5 HOH 41 366 366 HOH HOH A . E 5 HOH 42 367 367 HOH HOH A . E 5 HOH 43 371 371 HOH HOH A . E 5 HOH 44 372 372 HOH HOH A . E 5 HOH 45 375 375 HOH HOH A . E 5 HOH 46 376 376 HOH HOH A . E 5 HOH 47 377 377 HOH HOH A . E 5 HOH 48 378 378 HOH HOH A . E 5 HOH 49 381 381 HOH HOH A . E 5 HOH 50 382 382 HOH HOH A . E 5 HOH 51 383 383 HOH HOH A . E 5 HOH 52 384 384 HOH HOH A . E 5 HOH 53 386 386 HOH HOH A . E 5 HOH 54 387 387 HOH HOH A . E 5 HOH 55 388 388 HOH HOH A . E 5 HOH 56 389 389 HOH HOH A . E 5 HOH 57 390 390 HOH HOH A . E 5 HOH 58 391 391 HOH HOH A . E 5 HOH 59 394 394 HOH HOH A . E 5 HOH 60 395 395 HOH HOH A . E 5 HOH 61 396 396 HOH HOH A . E 5 HOH 62 397 397 HOH HOH A . E 5 HOH 63 398 398 HOH HOH A . E 5 HOH 64 399 399 HOH HOH A . E 5 HOH 65 401 401 HOH HOH A . E 5 HOH 66 403 403 HOH HOH A . E 5 HOH 67 404 404 HOH HOH A . E 5 HOH 68 405 405 HOH HOH A . E 5 HOH 69 406 406 HOH HOH A . E 5 HOH 70 407 407 HOH HOH A . E 5 HOH 71 408 408 HOH HOH A . E 5 HOH 72 409 409 HOH HOH A . E 5 HOH 73 415 415 HOH HOH A . E 5 HOH 74 416 416 HOH HOH A . E 5 HOH 75 420 420 HOH HOH A . E 5 HOH 76 425 425 HOH HOH A . E 5 HOH 77 426 426 HOH HOH A . E 5 HOH 78 427 427 HOH HOH A . E 5 HOH 79 430 430 HOH HOH A . E 5 HOH 80 431 431 HOH HOH A . E 5 HOH 81 432 432 HOH HOH A . E 5 HOH 82 433 433 HOH HOH A . E 5 HOH 83 436 436 HOH HOH A . E 5 HOH 84 437 437 HOH HOH A . E 5 HOH 85 438 438 HOH HOH A . E 5 HOH 86 440 440 HOH HOH A . E 5 HOH 87 503 503 HOH HOH A . E 5 HOH 88 508 508 HOH HOH A . E 5 HOH 89 509 509 HOH HOH A . E 5 HOH 90 510 510 HOH HOH A . E 5 HOH 91 513 513 HOH HOH A . E 5 HOH 92 514 514 HOH HOH A . E 5 HOH 93 515 515 HOH HOH A . E 5 HOH 94 517 517 HOH HOH A . E 5 HOH 95 518 518 HOH HOH A . E 5 HOH 96 522 522 HOH HOH A . E 5 HOH 97 602 602 HOH HOH A . E 5 HOH 98 603 603 HOH HOH A . E 5 HOH 99 604 604 HOH HOH A . E 5 HOH 100 605 605 HOH HOH A . E 5 HOH 101 606 606 HOH HOH A . E 5 HOH 102 608 608 HOH HOH A . E 5 HOH 103 609 609 HOH HOH A . E 5 HOH 104 610 610 HOH HOH A . E 5 HOH 105 701 701 HOH HOH A . E 5 HOH 106 702 702 HOH HOH A . E 5 HOH 107 801 801 HOH HOH A . E 5 HOH 108 802 802 HOH HOH A . E 5 HOH 109 803 803 HOH HOH A . E 5 HOH 110 804 804 HOH HOH A . E 5 HOH 111 805 805 HOH HOH A . E 5 HOH 112 806 806 HOH HOH A . E 5 HOH 113 807 807 HOH HOH A . E 5 HOH 114 808 808 HOH HOH A . E 5 HOH 115 809 809 HOH HOH A . E 5 HOH 116 810 810 HOH HOH A . E 5 HOH 117 811 811 HOH HOH A . E 5 HOH 118 812 812 HOH HOH A . E 5 HOH 119 813 813 HOH HOH A . E 5 HOH 120 814 814 HOH HOH A . E 5 HOH 121 815 815 HOH HOH A . E 5 HOH 122 816 816 HOH HOH A . E 5 HOH 123 817 817 HOH HOH A . E 5 HOH 124 818 818 HOH HOH A . E 5 HOH 125 819 819 HOH HOH A . E 5 HOH 126 820 820 HOH HOH A . E 5 HOH 127 821 821 HOH HOH A . E 5 HOH 128 822 822 HOH HOH A . E 5 HOH 129 823 823 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A SER 63 A SER 63 ? SER 'GLYCOSYLATION SITE' 2 A PHE 1 A PHE 1 ? PHE 'METHYL L-PHENYLALANINATE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id PT _pdbx_struct_special_symmetry.auth_seq_id 200 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id PT _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 54 ? A HIS 54 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 NE2 ? A HIS 54 ? A HIS 54 ? 4_566 97.4 ? 2 NE2 ? A HIS 54 ? A HIS 54 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 333 ? 1_555 73.6 ? 3 NE2 ? A HIS 54 ? A HIS 54 ? 4_566 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 333 ? 1_555 60.2 ? 4 NE2 ? A HIS 54 ? A HIS 54 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 333 ? 4_566 60.2 ? 5 NE2 ? A HIS 54 ? A HIS 54 ? 4_566 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 333 ? 4_566 73.6 ? 6 O ? E HOH . ? A HOH 333 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 333 ? 4_566 107.6 ? 7 NE2 ? A HIS 54 ? A HIS 54 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 348 ? 1_555 173.0 ? 8 NE2 ? A HIS 54 ? A HIS 54 ? 4_566 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 348 ? 1_555 79.2 ? 9 O ? E HOH . ? A HOH 333 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 348 ? 1_555 109.3 ? 10 O ? E HOH . ? A HOH 333 ? 4_566 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 348 ? 1_555 112.9 ? 11 NE2 ? A HIS 54 ? A HIS 54 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 348 ? 4_566 79.2 ? 12 NE2 ? A HIS 54 ? A HIS 54 ? 4_566 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 348 ? 4_566 173.1 ? 13 O ? E HOH . ? A HOH 333 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 348 ? 4_566 113.0 ? 14 O ? E HOH . ? A HOH 333 ? 4_566 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 348 ? 4_566 109.4 ? 15 O ? E HOH . ? A HOH 348 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 348 ? 4_566 104.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-04-29 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 3 0 2023-02-15 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' Advisory 10 5 'Structure model' 'Atomic model' 11 5 'Structure model' 'Data collection' 12 5 'Structure model' 'Database references' 13 5 'Structure model' 'Derived calculations' 14 5 'Structure model' 'Non-polymer description' 15 5 'Structure model' 'Polymer sequence' 16 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly_gen 13 4 'Structure model' pdbx_struct_conn_angle 14 4 'Structure model' pdbx_struct_special_symmetry 15 4 'Structure model' software 16 4 'Structure model' struct_asym 17 4 'Structure model' struct_conn 18 4 'Structure model' struct_site 19 4 'Structure model' struct_site_gen 20 5 'Structure model' atom_site 21 5 'Structure model' chem_comp 22 5 'Structure model' database_2 23 5 'Structure model' entity 24 5 'Structure model' entity_poly 25 5 'Structure model' entity_poly_seq 26 5 'Structure model' pdbx_poly_seq_scheme 27 5 'Structure model' pdbx_struct_mod_residue 28 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 29 5 'Structure model' pdbx_validate_rmsd_angle 30 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.occupancy' 14 4 'Structure model' '_atom_site.type_symbol' 15 4 'Structure model' '_chem_comp.name' 16 4 'Structure model' '_chem_comp.type' 17 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 28 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 29 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 30 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 31 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 32 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 33 4 'Structure model' '_pdbx_struct_conn_angle.value' 34 4 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 35 4 'Structure model' '_software.name' 36 4 'Structure model' '_struct_conn.conn_type_id' 37 4 'Structure model' '_struct_conn.id' 38 4 'Structure model' '_struct_conn.pdbx_dist_value' 39 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 40 4 'Structure model' '_struct_conn.pdbx_role' 41 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 42 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 43 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 44 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 45 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 46 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 47 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 48 4 'Structure model' '_struct_conn.ptnr1_symmetry' 49 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 50 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 51 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 52 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 53 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 54 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 55 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 56 4 'Structure model' '_struct_conn.ptnr2_symmetry' 57 5 'Structure model' '_atom_site.B_iso_or_equiv' 58 5 'Structure model' '_atom_site.Cartn_x' 59 5 'Structure model' '_atom_site.Cartn_y' 60 5 'Structure model' '_atom_site.Cartn_z' 61 5 'Structure model' '_atom_site.auth_atom_id' 62 5 'Structure model' '_atom_site.auth_comp_id' 63 5 'Structure model' '_atom_site.group_PDB' 64 5 'Structure model' '_atom_site.label_atom_id' 65 5 'Structure model' '_atom_site.label_comp_id' 66 5 'Structure model' '_atom_site.type_symbol' 67 5 'Structure model' '_chem_comp.formula' 68 5 'Structure model' '_chem_comp.formula_weight' 69 5 'Structure model' '_chem_comp.id' 70 5 'Structure model' '_chem_comp.mon_nstd_flag' 71 5 'Structure model' '_chem_comp.name' 72 5 'Structure model' '_chem_comp.pdbx_synonyms' 73 5 'Structure model' '_chem_comp.type' 74 5 'Structure model' '_database_2.pdbx_DOI' 75 5 'Structure model' '_database_2.pdbx_database_accession' 76 5 'Structure model' '_entity.formula_weight' 77 5 'Structure model' '_entity_poly.nstd_monomer' 78 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 79 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 80 5 'Structure model' '_entity_poly_seq.mon_id' 81 5 'Structure model' '_pdbx_poly_seq_scheme.mon_id' 82 5 'Structure model' '_pdbx_poly_seq_scheme.pdb_mon_id' 83 5 'Structure model' '_pdbx_struct_mod_residue.auth_comp_id' 84 5 'Structure model' '_pdbx_struct_mod_residue.label_comp_id' 85 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 86 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 87 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 ROTAVATA 'data reduction' . ? 2 Agrovata 'data reduction' . ? 3 X-PLOR 'model building' 3.1 ? 4 X-PLOR refinement 3.1 ? 5 CCP4 'data scaling' '(AGROVATA' ? 6 ROTAVATA 'data scaling' . ? 7 X-PLOR phasing 3.1 ? 8 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 NE2 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 HIS _pdbx_validate_rmsd_bond.auth_seq_id_1 146 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 HIS _pdbx_validate_rmsd_bond.auth_seq_id_2 146 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.294 _pdbx_validate_rmsd_bond.bond_target_value 1.373 _pdbx_validate_rmsd_bond.bond_deviation -0.079 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A PHE 1 ? ? CA A PHE 1 ? ? CB A PHE 1 ? ? 98.94 110.60 -11.66 1.80 N 2 1 N A THR 2 ? ? CA A THR 2 ? ? C A THR 2 ? ? 135.13 111.00 24.13 2.70 N 3 1 CA A VAL 19 ? ? CB A VAL 19 ? ? CG2 A VAL 19 ? ? 100.67 110.90 -10.23 1.50 N 4 1 CB A TYR 27 ? ? CG A TYR 27 ? ? CD1 A TYR 27 ? ? 116.73 121.00 -4.27 0.60 N 5 1 NE A ARG 30 ? ? CZ A ARG 30 ? ? NH2 A ARG 30 ? ? 116.95 120.30 -3.35 0.50 N 6 1 CD1 A TRP 57 ? ? CG A TRP 57 ? ? CD2 A TRP 57 ? ? 112.63 106.30 6.33 0.80 N 7 1 CB A TRP 57 ? ? CG A TRP 57 ? ? CD1 A TRP 57 ? ? 118.75 127.00 -8.25 1.30 N 8 1 CE2 A TRP 57 ? ? CD2 A TRP 57 ? ? CG A TRP 57 ? ? 101.29 107.30 -6.01 0.80 N 9 1 CG A TRP 57 ? ? CD2 A TRP 57 ? ? CE3 A TRP 57 ? ? 140.24 133.90 6.34 0.90 N 10 1 CA A SER 68 ? ? CB A SER 68 ? ? OG A SER 68 ? ? 128.15 111.20 16.95 2.70 N 11 1 CB A TYR 77 ? ? CG A TYR 77 ? ? CD2 A TYR 77 ? ? 115.90 121.00 -5.10 0.60 N 12 1 CA A LEU 106 ? ? CB A LEU 106 ? ? CG A LEU 106 ? ? 136.82 115.30 21.52 2.30 N 13 1 CD1 A TRP 109 ? ? CG A TRP 109 ? ? CD2 A TRP 109 ? ? 112.82 106.30 6.52 0.80 N 14 1 CE2 A TRP 109 ? ? CD2 A TRP 109 ? ? CG A TRP 109 ? ? 101.55 107.30 -5.75 0.80 N 15 1 CD1 A TRP 119 ? ? CG A TRP 119 ? ? CD2 A TRP 119 ? ? 112.80 106.30 6.50 0.80 N 16 1 CE2 A TRP 119 ? ? CD2 A TRP 119 ? ? CG A TRP 119 ? ? 101.31 107.30 -5.99 0.80 N 17 1 CG A TRP 119 ? ? CD2 A TRP 119 ? ? CE3 A TRP 119 ? ? 140.02 133.90 6.12 0.90 N 18 1 N A VAL 125 ? ? CA A VAL 125 ? ? CB A VAL 125 ? ? 98.12 111.50 -13.38 2.20 N 19 1 NE A ARG 152 ? ? CZ A ARG 152 ? ? NH1 A ARG 152 ? ? 123.41 120.30 3.11 0.50 N 20 1 NE A ARG 152 ? ? CZ A ARG 152 ? ? NH2 A ARG 152 ? ? 116.37 120.30 -3.93 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 54 ? ? -147.14 -29.57 2 1 GLU A 113 ? ? -109.63 77.08 3 1 ASN A 114 ? ? -4.61 106.11 4 1 ALA A 136 ? ? -118.03 62.29 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 50 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.096 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 ? NAG 161 n B 2 GLA 2 B GLA 2 ? GAL 160 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpa GLA 'COMMON NAME' GMML 1.0 a-D-galactopyranose GLA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Galp GLA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGalpa1-3DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1a_1-5]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(3+1)][b-D-GlcpNAc]{[(3+1)][a-D-Galp]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 GLA _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 GLA 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'PLATINUM (II) ION' PT 4 HEPTANE-1,2,3-TRIOL HTO 5 water HOH #