data_1AY6 # _entry.id 1AY6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AY6 pdb_00001ay6 10.2210/pdb1ay6/pdb WWPDB D_1000171399 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AY6 _pdbx_database_status.recvd_initial_deposition_date 1997-11-14 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ganesh, V.' 1 'Maryanoff, B.E.' 2 'Tulinsky, A.' 3 # _citation.id primary _citation.title 'Novel thrombin inhibitors that are based on a macrocyclic tripeptide motif' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 6 _citation.page_first 2947 _citation.page_last 2952 _citation.year 1996 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8367461 _citation.pdbx_database_id_DOI '10.1016/S0960-894X(96)00554-9' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Greco, M.N.' 1 ? primary 'Powell, E.T.' 2 ? primary 'Hecker, L.R.' 3 ? primary 'Andrade-Gordon, P.' 4 ? primary 'Kauffman, J.A.' 5 ? primary 'Lewis, J.M.' 6 ? primary 'Ganesh, V.' 7 ? primary 'Tulinsky, A.' 8 ? primary 'Maryanoff, B.E.' 9 ? # _cell.entry_id 1AY6 _cell.length_a 71.080 _cell.length_b 72.140 _cell.length_c 72.820 _cell.angle_alpha 90.00 _cell.angle_beta 100.80 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1AY6 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'THROMBIN LIGHT CHAIN' 4096.534 1 3.4.21.5 ? ? ? 2 polymer nat 'THROMBIN HEAVY CHAIN' 29780.219 1 3.4.21.5 ? ? ? 3 polymer syn HIRUGEN 1632.654 1 ? ? 'residues 55-64' ? 4 non-polymer syn ;amino({3-[(3R,5R,14S,16S,21aR)-5,14-dihydroxy-1,4,17-trioxo-16-(2-phenylethyl)icosahydro-1H-pyrrolo[1,2-d][1,4,7,11]tetraazacyclononadecin-3-yl]propyl}amino)methaniminium ; 588.762 1 ? ? ? ? 5 water nat water 18.015 176 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? 3 'polypeptide(L)' no yes '(ACE)NEDFEEIPEE(TYS)L' XNEDFEEIPEEYL I ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 PHE n 1 3 GLY n 1 4 SER n 1 5 GLY n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 CYS n 1 10 GLY n 1 11 LEU n 1 12 ARG n 1 13 PRO n 1 14 LEU n 1 15 PHE n 1 16 GLU n 1 17 LYS n 1 18 LYS n 1 19 SER n 1 20 LEU n 1 21 GLU n 1 22 ASP n 1 23 LYS n 1 24 THR n 1 25 GLU n 1 26 ARG n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 TYR n 1 33 ILE n 1 34 ASP n 1 35 GLY n 1 36 ARG n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 2 259 GLU n 3 1 ACE n 3 2 ASN n 3 3 GLU n 3 4 ASP n 3 5 PHE n 3 6 GLU n 3 7 GLU n 3 8 ILE n 3 9 PRO n 3 10 GLU n 3 11 GLU n 3 12 TYS n 3 13 LEU n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? BLOOD ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? BLOOD ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Hirudo medicinalis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 6421 _pdbx_entity_src_syn.details 'Acetyl hirugen' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN 1 P00734 1 ;MAHVRGLQLPGCLALAALCSLVHSQHVFLAPQQARSLLQRVRRANTFLEEVRKGNLERECVEETCSYEEAFEALESSTAT DVFWAKYTACETARTPRDKLAACLEGNCAEGLGTNYRGHVNITRSGIECQLWRSRYPHKPEINSTTHPGADLQENFCRNP DSSTTGPWCYTTDPTVRRQECSIPVCGQDQVTVAMTPRSEGSSVNLSPPLEQCVPDRGQQYQGRLAVTTHGLPCLAWASA QAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGRTATSEY QTFFNPRTFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRW VLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKR GDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE ; ? 2 UNP THRB_HUMAN 2 P00734 1 ;MAHVRGLQLPGCLALAALCSLVHSQHVFLAPQQARSLLQRVRRANTFLEEVRKGNLERECVEETCSYEEAFEALESSTAT DVFWAKYTACETARTPRDKLAACLEGNCAEGLGTNYRGHVNITRSGIECQLWRSRYPHKPEINSTTHPGADLQENFCRNP DSSTTGPWCYTTDPTVRRQECSIPVCGQDQVTVAMTPRSEGSSVNLSPPLEQCVPDRGQQYQGRLAVTTHGLPCLAWASA QAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGRTATSEY QTFFNPRTFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRW VLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKR GDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE ; ? 3 UNP ITHB_HIRME 3 P01050 55 DFEEIPEEYL ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1AY6 L 1 H 36 N P00734 328 ? 363 ? 1 14 2 2 1AY6 H 1 ? 259 ? P00734 364 ? 622 ? 16 247 3 3 1AY6 I 4 ? 13 ? P01050 55 ? 64 ? 55 64 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 1AY6 ACE I 1 ? UNP P01050 ? ? insertion 52 1 3 1AY6 ASN I 2 ? UNP P01050 ? ? insertion 53 2 3 1AY6 GLU I 3 ? UNP P01050 ? ? insertion 54 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1ZV peptide-like . ;amino({3-[(3R,5R,14S,16S,21aR)-5,14-dihydroxy-1,4,17-trioxo-16-(2-phenylethyl)icosahydro-1H-pyrrolo[1,2-d][1,4,7,11]tetraazacyclononadecin-3-yl]propyl}amino)methaniminium ; ? 'C30 H50 N7 O5 1' 588.762 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 TYS 'L-peptide linking' n O-SULFO-L-TYROSINE ? 'C9 H11 N O6 S' 261.252 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1AY6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 51. _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'CRYSTALLIZED FROM 25% PEG 8K, 0.1M SOD. PHOSPHATE BUFFER PH 7.5. MACROSEEDED TO MAKE LARGER CRYSTALS' # _diffrn.id 1 _diffrn.ambient_temp 300 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 1993-08-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AY6 _reflns.observed_criterion_sigma_I 2.5 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.80 _reflns.number_obs 25408 _reflns.number_all ? _reflns.percent_possible_obs 74. _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_Rsym_value 0.12 _reflns.pdbx_netI_over_sigmaI 14. _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 2.0 _reflns_shell.percent_possible_all 65. _reflns_shell.Rmerge_I_obs 0.06 _reflns_shell.pdbx_Rsym_value 0.25 _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 2. _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1AY6 _refine.ls_number_reflns_obs 18408 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.0 _refine.ls_d_res_high 1.8 _refine.ls_percent_reflns_obs 75. _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.166 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 28. _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1TMB' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1AY6 _refine_analyze.Luzzati_coordinate_error_obs 0.2 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 7.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2350 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 176 _refine_hist.number_atoms_total 2568 _refine_hist.d_res_high 1.8 _refine_hist.d_res_low 7.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.018 0.020 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.025 0.030 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.055 0.050 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 1.1 1.0 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 1.8 1.5 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 2.6 2.0 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 3.8 2.5 ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.030 0.030 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.15 0.20 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.22 0.60 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.31 0.60 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd 0.28 0.60 ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 4. 3. ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 20. 15. ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor 30. 20. ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1AY6 _struct.title 'THROMBIN INHIBITOR FROM THEONALLA, CYCLOTHEANAMIDE-BASED MACROCYCLIC TRIPEPTIDE MOTIF' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AY6 _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'COMPLEX OF SERINE PROTEASE-INHIBITOR, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 16 ? LYS A 18 ? GLU L 8 LYS L 10 5 ? 3 HELX_P HELX_P2 2 GLU A 25 C SER A 31 I GLU L 14 SER L 14 1 ? 7 HELX_P HELX_P3 3 ALA B 42 ? CYS B 44 ? ALA H 56 CYS H 58 5 ? 3 HELX_P HELX_P4 4 PRO B 48 B TRP B 50 D PRO H 60 TRP H 60 5 ? 3 HELX_P HELX_P5 5 GLU B 56 ? ASP B 58 ? GLU H 61 ASP H 63 5 ? 3 HELX_P HELX_P6 6 ARG B 123 ? LEU B 129 C ARG H 126 LEU H 129 1 ? 7 HELX_P HELX_P7 7 ARG B 170 ? SER B 176 ? ARG H 165 SER H 171 1 ? 7 HELX_P HELX_P8 8 PRO B 192 ? GLU B 194 B PRO H 186 GLU H 186 5 ? 3 HELX_P HELX_P9 9 PHE B 244 ? PHE B 257 ? PHE H 232 PHE H 245 5 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 B CYS 119 SG ? ? L CYS 1 H CYS 122 1_555 ? ? ? ? ? ? ? 1.991 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 1.978 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 1.982 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.050 ? ? covale1 covale none ? D 1ZV . C8 ? ? ? 1_555 B SER 205 OG ? ? H 1ZV 5 H SER 195 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale2 covale both ? C TYS 12 C ? ? ? 1_555 C LEU 13 N ? ? I TYS 63 I LEU 64 1_555 ? ? ? ? ? ? ? 1.340 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.54 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS B 77 ? MET B 80 ? LYS H 81 MET H 84 A 2 LEU B 59 ? ILE B 63 ? LEU H 64 ILE H 68 A 3 GLN B 15 ? ARG B 20 ? GLN H 30 ARG H 35 A 4 GLU B 25 ? SER B 31 ? GLU H 39 SER H 45 B 1 TRP B 37 ? THR B 40 ? TRP H 51 THR H 54 B 2 ALA B 101 ? LEU B 105 ? ALA H 104 LEU H 108 B 3 LEU B 81 ? ILE B 86 ? LEU H 85 ILE H 90 C 1 LYS B 135 ? GLY B 140 ? LYS H 135 GLY H 140 C 2 GLN B 161 ? PRO B 166 ? GLN H 156 PRO H 161 D 1 MET B 185 ? ALA B 188 ? MET H 180 ALA H 183 D 2 GLY B 238 ? HIS B 242 ? GLY H 226 HIS H 230 D 3 TRP B 219 ? TRP B 227 ? TRP H 207 TRP H 215 D 4 PRO B 208 ? LYS B 212 ? PRO H 198 LYS H 202 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS B 77 ? O LYS H 81 N ILE B 63 ? N ILE H 68 A 2 3 O LEU B 60 ? O LEU H 65 N PHE B 19 ? N PHE H 34 A 3 4 O VAL B 16 ? O VAL H 31 N ALA B 30 ? N ALA H 44 B 1 2 O VAL B 38 ? O VAL H 52 N MET B 103 ? N MET H 106 B 2 3 O LEU B 102 ? O LEU H 105 N TYR B 85 ? N TYR H 89 C 1 2 O GLY B 136 ? O GLY H 136 N LEU B 165 ? N LEU H 160 D 1 2 O PHE B 186 ? O PHE H 181 N TYR B 240 ? N TYR H 228 D 2 3 O PHE B 239 ? O PHE H 227 N TRP B 227 ? N TRP H 215 D 3 4 O TYR B 220 ? O TYR H 208 N MET B 211 ? N MET H 201 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 13 'BINDING SITE FOR CHAIN I OF HIRUGEN' AC2 Software H 1ZV 5 ? 13 'BINDING SITE FOR RESIDUE 1ZV H 5' CAT Unknown ? ? ? ? 3 'ACTIVE SITE' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 PHE B 19 ? PHE H 34 . ? 1_555 ? 2 AC1 13 LYS B 21 ? LYS H 36 . ? 1_555 ? 3 AC1 13 GLN B 24 ? GLN H 38 . ? 1_555 ? 4 AC1 13 ARG B 62 ? ARG H 67 . ? 1_555 ? 5 AC1 13 ARG B 68 ? ARG H 73 . ? 1_555 ? 6 AC1 13 THR B 69 ? THR H 74 . ? 1_555 ? 7 AC1 13 ARG B 70 ? ARG H 75 . ? 1_555 ? 8 AC1 13 TYR B 71 ? TYR H 76 . ? 1_555 ? 9 AC1 13 GLU B 76 ? GLU H 80 . ? 1_555 ? 10 AC1 13 LYS B 77 ? LYS H 81 . ? 1_555 ? 11 AC1 13 ILE B 78 ? ILE H 82 . ? 1_555 ? 12 AC1 13 HOH F . ? HOH H 803 . ? 1_555 ? 13 AC1 13 HOH G . ? HOH I 552 . ? 1_555 ? 14 AC2 13 HIS B 43 ? HIS H 57 . ? 1_555 ? 15 AC2 13 ASN B 95 ? ASN H 98 . ? 1_555 ? 16 AC2 13 ILE B 179 ? ILE H 174 . ? 1_555 ? 17 AC2 13 ASP B 199 ? ASP H 189 . ? 1_555 ? 18 AC2 13 ALA B 200 ? ALA H 190 . ? 1_555 ? 19 AC2 13 GLU B 202 ? GLU H 192 . ? 1_555 ? 20 AC2 13 GLY B 203 ? GLY H 193 . ? 1_555 ? 21 AC2 13 SER B 205 ? SER H 195 . ? 1_555 ? 22 AC2 13 SER B 226 ? SER H 214 . ? 1_555 ? 23 AC2 13 TRP B 227 ? TRP H 215 . ? 1_555 ? 24 AC2 13 GLY B 228 ? GLY H 216 . ? 1_555 ? 25 AC2 13 GLY B 230 ? GLY H 219 . ? 1_555 ? 26 AC2 13 GLY B 238 ? GLY H 226 . ? 1_555 ? 27 CAT 3 HIS B 43 ? HIS H 57 . ? 1_555 ? 28 CAT 3 ASP B 99 ? ASP H 102 . ? 1_555 ? 29 CAT 3 SER B 205 ? SER H 195 . ? 1_555 ? # _database_PDB_matrix.entry_id 1AY6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1AY6 _atom_sites.fract_transf_matrix[1][1] 0.014069 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002684 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013862 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013980 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 ? ? ? L H n A 1 2 PHE 2 1 ? ? ? L G n A 1 3 GLY 3 1 ? ? ? L F n A 1 4 SER 4 1 ? ? ? L E n A 1 5 GLY 5 1 1 GLY GLY L D n A 1 6 GLU 6 1 1 GLU GLU L C n A 1 7 ALA 7 1 1 ALA ALA L B n A 1 8 ASP 8 1 1 ASP ASP L A n A 1 9 CYS 9 1 1 CYS CYS L . n A 1 10 GLY 10 2 2 GLY GLY L . n A 1 11 LEU 11 3 3 LEU LEU L . n A 1 12 ARG 12 4 4 ARG ARG L . n A 1 13 PRO 13 5 5 PRO PRO L . n A 1 14 LEU 14 6 6 LEU LEU L . n A 1 15 PHE 15 7 7 PHE PHE L . n A 1 16 GLU 16 8 8 GLU GLU L . n A 1 17 LYS 17 9 9 LYS LYS L . n A 1 18 LYS 18 10 10 LYS LYS L . n A 1 19 SER 19 11 11 SER SER L . n A 1 20 LEU 20 12 12 LEU LEU L . n A 1 21 GLU 21 13 13 GLU GLU L . n A 1 22 ASP 22 14 14 ASP ASP L . n A 1 23 LYS 23 14 14 LYS LYS L A n A 1 24 THR 24 14 14 THR THR L B n A 1 25 GLU 25 14 14 GLU GLU L C n A 1 26 ARG 26 14 14 ARG ARG L D n A 1 27 GLU 27 14 14 GLU GLU L E n A 1 28 LEU 28 14 14 LEU LEU L F n A 1 29 LEU 29 14 14 LEU LEU L G n A 1 30 GLU 30 14 14 GLU GLU L H n A 1 31 SER 31 14 14 SER SER L I n A 1 32 TYR 32 14 14 TYR TYR L J n A 1 33 ILE 33 14 14 ILE ILE L K n A 1 34 ASP 34 14 ? ? ? L L n A 1 35 GLY 35 14 ? ? ? L M n A 1 36 ARG 36 14 ? ? ? L N n B 2 1 ILE 1 16 16 ILE ILE H . n B 2 2 VAL 2 17 17 VAL VAL H . n B 2 3 GLU 3 18 18 GLU GLU H . n B 2 4 GLY 4 19 19 GLY GLY H . n B 2 5 SER 5 20 20 SER SER H . n B 2 6 ASP 6 21 21 ASP ASP H . n B 2 7 ALA 7 22 22 ALA ALA H . n B 2 8 GLU 8 23 23 GLU GLU H . n B 2 9 ILE 9 24 24 ILE ILE H . n B 2 10 GLY 10 25 25 GLY GLY H . n B 2 11 MET 11 26 26 MET MET H . n B 2 12 SER 12 27 27 SER SER H . n B 2 13 PRO 13 28 28 PRO PRO H . n B 2 14 TRP 14 29 29 TRP TRP H . n B 2 15 GLN 15 30 30 GLN GLN H . n B 2 16 VAL 16 31 31 VAL VAL H . n B 2 17 MET 17 32 32 MET MET H . n B 2 18 LEU 18 33 33 LEU LEU H . n B 2 19 PHE 19 34 34 PHE PHE H . n B 2 20 ARG 20 35 35 ARG ARG H . n B 2 21 LYS 21 36 36 LYS LYS H . n B 2 22 SER 22 36 36 SER SER H A n B 2 23 PRO 23 37 37 PRO PRO H . n B 2 24 GLN 24 38 38 GLN GLN H . n B 2 25 GLU 25 39 39 GLU GLU H . n B 2 26 LEU 26 40 40 LEU LEU H . n B 2 27 LEU 27 41 41 LEU LEU H . n B 2 28 CYS 28 42 42 CYS CYS H . n B 2 29 GLY 29 43 43 GLY GLY H . n B 2 30 ALA 30 44 44 ALA ALA H . n B 2 31 SER 31 45 45 SER SER H . n B 2 32 LEU 32 46 46 LEU LEU H . n B 2 33 ILE 33 47 47 ILE ILE H . n B 2 34 SER 34 48 48 SER SER H . n B 2 35 ASP 35 49 49 ASP ASP H . n B 2 36 ARG 36 50 50 ARG ARG H . n B 2 37 TRP 37 51 51 TRP TRP H . n B 2 38 VAL 38 52 52 VAL VAL H . n B 2 39 LEU 39 53 53 LEU LEU H . n B 2 40 THR 40 54 54 THR THR H . n B 2 41 ALA 41 55 55 ALA ALA H . n B 2 42 ALA 42 56 56 ALA ALA H . n B 2 43 HIS 43 57 57 HIS HIS H . n B 2 44 CYS 44 58 58 CYS CYS H . n B 2 45 LEU 45 59 59 LEU LEU H . n B 2 46 LEU 46 60 60 LEU LEU H . n B 2 47 TYR 47 60 60 TYR TYR H A n B 2 48 PRO 48 60 60 PRO PRO H B n B 2 49 PRO 49 60 60 PRO PRO H C n B 2 50 TRP 50 60 60 TRP TRP H D n B 2 51 ASP 51 60 60 ASP ASP H E n B 2 52 LYS 52 60 60 LYS LYS H F n B 2 53 ASN 53 60 60 ASN ASN H G n B 2 54 PHE 54 60 60 PHE PHE H H n B 2 55 THR 55 60 60 THR THR H I n B 2 56 GLU 56 61 61 GLU GLU H . n B 2 57 ASN 57 62 62 ASN ASN H . n B 2 58 ASP 58 63 63 ASP ASP H . n B 2 59 LEU 59 64 64 LEU LEU H . n B 2 60 LEU 60 65 65 LEU LEU H . n B 2 61 VAL 61 66 66 VAL VAL H . n B 2 62 ARG 62 67 67 ARG ARG H . n B 2 63 ILE 63 68 68 ILE ILE H . n B 2 64 GLY 64 69 69 GLY GLY H . n B 2 65 LYS 65 70 70 LYS LYS H . n B 2 66 HIS 66 71 71 HIS HIS H . n B 2 67 SER 67 72 72 SER SER H . n B 2 68 ARG 68 73 73 ARG ARG H . n B 2 69 THR 69 74 74 THR THR H . n B 2 70 ARG 70 75 75 ARG ARG H . n B 2 71 TYR 71 76 76 TYR TYR H . n B 2 72 GLU 72 77 77 GLU GLU H . n B 2 73 ARG 73 77 77 ARG ARG H A n B 2 74 ASN 74 78 78 ASN ASN H . n B 2 75 ILE 75 79 79 ILE ILE H . n B 2 76 GLU 76 80 80 GLU GLU H . n B 2 77 LYS 77 81 81 LYS LYS H . n B 2 78 ILE 78 82 82 ILE ILE H . n B 2 79 SER 79 83 83 SER SER H . n B 2 80 MET 80 84 84 MET MET H . n B 2 81 LEU 81 85 85 LEU LEU H . n B 2 82 GLU 82 86 86 GLU GLU H . n B 2 83 LYS 83 87 87 LYS LYS H . n B 2 84 ILE 84 88 88 ILE ILE H . n B 2 85 TYR 85 89 89 TYR TYR H . n B 2 86 ILE 86 90 90 ILE ILE H . n B 2 87 HIS 87 91 91 HIS HIS H . n B 2 88 PRO 88 92 92 PRO PRO H . n B 2 89 ARG 89 93 93 ARG ARG H . n B 2 90 TYR 90 94 94 TYR TYR H . n B 2 91 ASN 91 95 95 ASN ASN H . n B 2 92 TRP 92 96 96 TRP TRP H . n B 2 93 ARG 93 97 97 ARG ARG H . n B 2 94 GLU 94 97 97 GLU GLU H A n B 2 95 ASN 95 98 98 ASN ASN H . n B 2 96 LEU 96 99 99 LEU LEU H . n B 2 97 ASP 97 100 100 ASP ASP H . n B 2 98 ARG 98 101 101 ARG ARG H . n B 2 99 ASP 99 102 102 ASP ASP H . n B 2 100 ILE 100 103 103 ILE ILE H . n B 2 101 ALA 101 104 104 ALA ALA H . n B 2 102 LEU 102 105 105 LEU LEU H . n B 2 103 MET 103 106 106 MET MET H . n B 2 104 LYS 104 107 107 LYS LYS H . n B 2 105 LEU 105 108 108 LEU LEU H . n B 2 106 LYS 106 109 109 LYS LYS H . n B 2 107 LYS 107 110 110 LYS LYS H . n B 2 108 PRO 108 111 111 PRO PRO H . n B 2 109 VAL 109 112 112 VAL VAL H . n B 2 110 ALA 110 113 113 ALA ALA H . n B 2 111 PHE 111 114 114 PHE PHE H . n B 2 112 SER 112 115 115 SER SER H . n B 2 113 ASP 113 116 116 ASP ASP H . n B 2 114 TYR 114 117 117 TYR TYR H . n B 2 115 ILE 115 118 118 ILE ILE H . n B 2 116 HIS 116 119 119 HIS HIS H . n B 2 117 PRO 117 120 120 PRO PRO H . n B 2 118 VAL 118 121 121 VAL VAL H . n B 2 119 CYS 119 122 122 CYS CYS H . n B 2 120 LEU 120 123 123 LEU LEU H . n B 2 121 PRO 121 124 124 PRO PRO H . n B 2 122 ASP 122 125 125 ASP ASP H . n B 2 123 ARG 123 126 126 ARG ARG H . n B 2 124 GLU 124 127 127 GLU GLU H . n B 2 125 THR 125 128 128 THR THR H . n B 2 126 ALA 126 129 129 ALA ALA H . n B 2 127 ALA 127 129 129 ALA ALA H A n B 2 128 SER 128 129 129 SER SER H B n B 2 129 LEU 129 129 129 LEU LEU H C n B 2 130 LEU 130 130 130 LEU LEU H . n B 2 131 GLN 131 131 131 GLN GLN H . n B 2 132 ALA 132 132 132 ALA ALA H . n B 2 133 GLY 133 133 133 GLY GLY H . n B 2 134 TYR 134 134 134 TYR TYR H . n B 2 135 LYS 135 135 135 LYS LYS H . n B 2 136 GLY 136 136 136 GLY GLY H . n B 2 137 ARG 137 137 137 ARG ARG H . n B 2 138 VAL 138 138 138 VAL VAL H . n B 2 139 THR 139 139 139 THR THR H . n B 2 140 GLY 140 140 140 GLY GLY H . n B 2 141 TRP 141 141 141 TRP TRP H . n B 2 142 GLY 142 142 142 GLY GLY H . n B 2 143 ASN 143 143 143 ASN ASN H . n B 2 144 LEU 144 144 144 LEU LEU H . n B 2 145 LYS 145 145 145 LYS LYS H . n B 2 146 GLU 146 146 146 GLU GLU H . n B 2 147 THR 147 147 147 THR THR H . n B 2 148 TRP 148 147 ? ? ? H A n B 2 149 THR 149 147 ? ? ? H B n B 2 150 ALA 150 147 ? ? ? H C n B 2 151 ASN 151 147 ? ? ? H D n B 2 152 VAL 152 147 ? ? ? H E n B 2 153 GLY 153 147 ? ? ? H F n B 2 154 LYS 154 147 ? ? ? H G n B 2 155 GLY 155 150 150 GLY GLY H . n B 2 156 GLN 156 151 151 GLN GLN H . n B 2 157 PRO 157 152 152 PRO PRO H . n B 2 158 SER 158 153 153 SER SER H . n B 2 159 VAL 159 154 154 VAL VAL H . n B 2 160 LEU 160 155 155 LEU LEU H . n B 2 161 GLN 161 156 156 GLN GLN H . n B 2 162 VAL 162 157 157 VAL VAL H . n B 2 163 VAL 163 158 158 VAL VAL H . n B 2 164 ASN 164 159 159 ASN ASN H . n B 2 165 LEU 165 160 160 LEU LEU H . n B 2 166 PRO 166 161 161 PRO PRO H . n B 2 167 ILE 167 162 162 ILE ILE H . n B 2 168 VAL 168 163 163 VAL VAL H . n B 2 169 GLU 169 164 164 GLU GLU H . n B 2 170 ARG 170 165 165 ARG ARG H . n B 2 171 PRO 171 166 166 PRO PRO H . n B 2 172 VAL 172 167 167 VAL VAL H . n B 2 173 CYS 173 168 168 CYS CYS H . n B 2 174 LYS 174 169 169 LYS LYS H . n B 2 175 ASP 175 170 170 ASP ASP H . n B 2 176 SER 176 171 171 SER SER H . n B 2 177 THR 177 172 172 THR THR H . n B 2 178 ARG 178 173 173 ARG ARG H . n B 2 179 ILE 179 174 174 ILE ILE H . n B 2 180 ARG 180 175 175 ARG ARG H . n B 2 181 ILE 181 176 176 ILE ILE H . n B 2 182 THR 182 177 177 THR THR H . n B 2 183 ASP 183 178 178 ASP ASP H . n B 2 184 ASN 184 179 179 ASN ASN H . n B 2 185 MET 185 180 180 MET MET H . n B 2 186 PHE 186 181 181 PHE PHE H . n B 2 187 CYS 187 182 182 CYS CYS H . n B 2 188 ALA 188 183 183 ALA ALA H . n B 2 189 GLY 189 184 184 GLY GLY H . n B 2 190 TYR 190 184 184 TYR TYR H A n B 2 191 LYS 191 185 185 LYS LYS H . n B 2 192 PRO 192 186 186 PRO PRO H . n B 2 193 ASP 193 186 186 ASP ASP H A n B 2 194 GLU 194 186 186 GLU GLU H B n B 2 195 GLY 195 186 186 GLY GLY H C n B 2 196 LYS 196 186 186 LYS LYS H D n B 2 197 ARG 197 187 187 ARG ARG H . n B 2 198 GLY 198 188 188 GLY GLY H . n B 2 199 ASP 199 189 189 ASP ASP H . n B 2 200 ALA 200 190 190 ALA ALA H . n B 2 201 CYS 201 191 191 CYS CYS H . n B 2 202 GLU 202 192 192 GLU GLU H . n B 2 203 GLY 203 193 193 GLY GLY H . n B 2 204 ASP 204 194 194 ASP ASP H . n B 2 205 SER 205 195 195 SER SER H . n B 2 206 GLY 206 196 196 GLY GLY H . n B 2 207 GLY 207 197 197 GLY GLY H . n B 2 208 PRO 208 198 198 PRO PRO H . n B 2 209 PHE 209 199 199 PHE PHE H . n B 2 210 VAL 210 200 200 VAL VAL H . n B 2 211 MET 211 201 201 MET MET H . n B 2 212 LYS 212 202 202 LYS LYS H . n B 2 213 SER 213 203 203 SER SER H . n B 2 214 PRO 214 204 204 PRO PRO H . n B 2 215 PHE 215 204 204 PHE PHE H A n B 2 216 ASN 216 204 204 ASN ASN H B n B 2 217 ASN 217 205 205 ASN ASN H . n B 2 218 ARG 218 206 206 ARG ARG H . n B 2 219 TRP 219 207 207 TRP TRP H . n B 2 220 TYR 220 208 208 TYR TYR H . n B 2 221 GLN 221 209 209 GLN GLN H . n B 2 222 MET 222 210 210 MET MET H . n B 2 223 GLY 223 211 211 GLY GLY H . n B 2 224 ILE 224 212 212 ILE ILE H . n B 2 225 VAL 225 213 213 VAL VAL H . n B 2 226 SER 226 214 214 SER SER H . n B 2 227 TRP 227 215 215 TRP TRP H . n B 2 228 GLY 228 216 216 GLY GLY H . n B 2 229 GLU 229 217 217 GLU GLU H . n B 2 230 GLY 230 219 219 GLY GLY H . n B 2 231 CYS 231 220 220 CYS CYS H . n B 2 232 ASP 232 221 221 ASP ASP H . n B 2 233 ARG 233 221 221 ARG ARG H A n B 2 234 ASP 234 222 222 ASP ASP H . n B 2 235 GLY 235 223 223 GLY GLY H . n B 2 236 LYS 236 224 224 LYS LYS H . n B 2 237 TYR 237 225 225 TYR TYR H . n B 2 238 GLY 238 226 226 GLY GLY H . n B 2 239 PHE 239 227 227 PHE PHE H . n B 2 240 TYR 240 228 228 TYR TYR H . n B 2 241 THR 241 229 229 THR THR H . n B 2 242 HIS 242 230 230 HIS HIS H . n B 2 243 VAL 243 231 231 VAL VAL H . n B 2 244 PHE 244 232 232 PHE PHE H . n B 2 245 ARG 245 233 233 ARG ARG H . n B 2 246 LEU 246 234 234 LEU LEU H . n B 2 247 LYS 247 235 235 LYS LYS H . n B 2 248 LYS 248 236 236 LYS LYS H . n B 2 249 TRP 249 237 237 TRP TRP H . n B 2 250 ILE 250 238 238 ILE ILE H . n B 2 251 GLN 251 239 239 GLN GLN H . n B 2 252 LYS 252 240 240 LYS LYS H . n B 2 253 VAL 253 241 241 VAL VAL H . n B 2 254 ILE 254 242 242 ILE ILE H . n B 2 255 ASP 255 243 243 ASP ASP H . n B 2 256 GLN 256 244 244 GLN GLN H . n B 2 257 PHE 257 245 245 PHE PHE H . n B 2 258 GLY 258 246 246 GLY GLY H . n B 2 259 GLU 259 247 247 GLU GLU H . n C 3 1 ACE 1 52 ? ? ? I . n C 3 2 ASN 2 53 ? ? ? I . n C 3 3 GLU 3 54 ? ? ? I . n C 3 4 ASP 4 55 55 ASP ASP I . n C 3 5 PHE 5 56 56 PHE PHE I . n C 3 6 GLU 6 57 57 GLU GLU I . n C 3 7 GLU 7 58 58 GLU GLU I . n C 3 8 ILE 8 59 59 ILE ILE I . n C 3 9 PRO 9 60 60 PRO PRO I . n C 3 10 GLU 10 61 61 GLU GLU I . n C 3 11 GLU 11 62 62 GLU GLU I . n C 3 12 TYS 12 63 63 TYS TYS I . n C 3 13 LEU 13 64 64 LEU LEU I . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 1ZV 1 5 5 1ZV 1ZV H . E 5 HOH 1 406 406 HOH HOH L . E 5 HOH 2 416 416 HOH HOH L . E 5 HOH 3 461 461 HOH HOH L . E 5 HOH 4 474 474 HOH HOH L . E 5 HOH 5 479 479 HOH HOH L . E 5 HOH 6 481 481 HOH HOH L . E 5 HOH 7 488 488 HOH HOH L . E 5 HOH 8 544 544 HOH HOH L . E 5 HOH 9 563 563 HOH HOH L . E 5 HOH 10 727 727 HOH HOH L . E 5 HOH 11 773 773 HOH HOH L . E 5 HOH 12 780 780 HOH HOH L . E 5 HOH 13 802 802 HOH HOH L . E 5 HOH 14 835 835 HOH HOH L . E 5 HOH 15 861 861 HOH HOH L . F 5 HOH 1 401 401 HOH HOH H . F 5 HOH 2 402 402 HOH HOH H . F 5 HOH 3 403 403 HOH HOH H . F 5 HOH 4 404 404 HOH HOH H . F 5 HOH 5 407 407 HOH HOH H . F 5 HOH 6 408 408 HOH HOH H . F 5 HOH 7 409 409 HOH HOH H . F 5 HOH 8 410 410 HOH HOH H . F 5 HOH 9 411 411 HOH HOH H . F 5 HOH 10 412 412 HOH HOH H . F 5 HOH 11 413 413 HOH HOH H . F 5 HOH 12 414 414 HOH HOH H . F 5 HOH 13 417 417 HOH HOH H . F 5 HOH 14 418 418 HOH HOH H . F 5 HOH 15 419 419 HOH HOH H . F 5 HOH 16 420 420 HOH HOH H . F 5 HOH 17 421 421 HOH HOH H . F 5 HOH 18 422 422 HOH HOH H . F 5 HOH 19 423 423 HOH HOH H . F 5 HOH 20 425 425 HOH HOH H . F 5 HOH 21 427 427 HOH HOH H . F 5 HOH 22 428 428 HOH HOH H . F 5 HOH 23 429 429 HOH HOH H . F 5 HOH 24 430 430 HOH HOH H . F 5 HOH 25 431 431 HOH HOH H . F 5 HOH 26 432 432 HOH HOH H . F 5 HOH 27 433 433 HOH HOH H . F 5 HOH 28 434 434 HOH HOH H . F 5 HOH 29 436 436 HOH HOH H . F 5 HOH 30 438 438 HOH HOH H . F 5 HOH 31 439 439 HOH HOH H . F 5 HOH 32 440 440 HOH HOH H . F 5 HOH 33 441 441 HOH HOH H . F 5 HOH 34 442 442 HOH HOH H . F 5 HOH 35 443 443 HOH HOH H . F 5 HOH 36 444 444 HOH HOH H . F 5 HOH 37 445 445 HOH HOH H . F 5 HOH 38 446 446 HOH HOH H . F 5 HOH 39 447 447 HOH HOH H . F 5 HOH 40 448 448 HOH HOH H . F 5 HOH 41 449 449 HOH HOH H . F 5 HOH 42 450 450 HOH HOH H . F 5 HOH 43 451 451 HOH HOH H . F 5 HOH 44 452 452 HOH HOH H . F 5 HOH 45 453 453 HOH HOH H . F 5 HOH 46 454 454 HOH HOH H . F 5 HOH 47 456 456 HOH HOH H . F 5 HOH 48 457 457 HOH HOH H . F 5 HOH 49 458 458 HOH HOH H . F 5 HOH 50 460 460 HOH HOH H . F 5 HOH 51 462 462 HOH HOH H . F 5 HOH 52 463 463 HOH HOH H . F 5 HOH 53 465 465 HOH HOH H . F 5 HOH 54 466 466 HOH HOH H . F 5 HOH 55 467 467 HOH HOH H . F 5 HOH 56 468 468 HOH HOH H . F 5 HOH 57 469 469 HOH HOH H . F 5 HOH 58 473 473 HOH HOH H . F 5 HOH 59 475 475 HOH HOH H . F 5 HOH 60 477 477 HOH HOH H . F 5 HOH 61 478 478 HOH HOH H . F 5 HOH 62 482 482 HOH HOH H . F 5 HOH 63 484 484 HOH HOH H . F 5 HOH 64 485 485 HOH HOH H . F 5 HOH 65 490 490 HOH HOH H . F 5 HOH 66 491 491 HOH HOH H . F 5 HOH 67 492 492 HOH HOH H . F 5 HOH 68 496 496 HOH HOH H . F 5 HOH 69 499 499 HOH HOH H . F 5 HOH 70 503 503 HOH HOH H . F 5 HOH 71 504 504 HOH HOH H . F 5 HOH 72 505 505 HOH HOH H . F 5 HOH 73 508 508 HOH HOH H . F 5 HOH 74 510 510 HOH HOH H . F 5 HOH 75 514 514 HOH HOH H . F 5 HOH 76 515 515 HOH HOH H . F 5 HOH 77 516 516 HOH HOH H . F 5 HOH 78 518 518 HOH HOH H . F 5 HOH 79 520 520 HOH HOH H . F 5 HOH 80 521 521 HOH HOH H . F 5 HOH 81 523 523 HOH HOH H . F 5 HOH 82 524 524 HOH HOH H . F 5 HOH 83 527 527 HOH HOH H . F 5 HOH 84 529 529 HOH HOH H . F 5 HOH 85 531 531 HOH HOH H . F 5 HOH 86 532 532 HOH HOH H . F 5 HOH 87 534 534 HOH HOH H . F 5 HOH 88 535 535 HOH HOH H . F 5 HOH 89 536 536 HOH HOH H . F 5 HOH 90 537 537 HOH HOH H . F 5 HOH 91 539 539 HOH HOH H . F 5 HOH 92 542 542 HOH HOH H . F 5 HOH 93 543 543 HOH HOH H . F 5 HOH 94 546 546 HOH HOH H . F 5 HOH 95 547 547 HOH HOH H . F 5 HOH 96 548 548 HOH HOH H . F 5 HOH 97 557 557 HOH HOH H . F 5 HOH 98 559 559 HOH HOH H . F 5 HOH 99 562 562 HOH HOH H . F 5 HOH 100 707 707 HOH HOH H . F 5 HOH 101 710 710 HOH HOH H . F 5 HOH 102 715 715 HOH HOH H . F 5 HOH 103 716 716 HOH HOH H . F 5 HOH 104 718 718 HOH HOH H . F 5 HOH 105 719 719 HOH HOH H . F 5 HOH 106 724 724 HOH HOH H . F 5 HOH 107 729 729 HOH HOH H . F 5 HOH 108 732 732 HOH HOH H . F 5 HOH 109 738 738 HOH HOH H . F 5 HOH 110 758 758 HOH HOH H . F 5 HOH 111 763 763 HOH HOH H . F 5 HOH 112 768 768 HOH HOH H . F 5 HOH 113 788 788 HOH HOH H . F 5 HOH 114 789 789 HOH HOH H . F 5 HOH 115 790 790 HOH HOH H . F 5 HOH 116 793 793 HOH HOH H . F 5 HOH 117 795 795 HOH HOH H . F 5 HOH 118 801 801 HOH HOH H . F 5 HOH 119 803 803 HOH HOH H . F 5 HOH 120 804 804 HOH HOH H . F 5 HOH 121 805 805 HOH HOH H . F 5 HOH 122 809 809 HOH HOH H . F 5 HOH 123 810 810 HOH HOH H . F 5 HOH 124 811 811 HOH HOH H . F 5 HOH 125 812 812 HOH HOH H . F 5 HOH 126 813 813 HOH HOH H . F 5 HOH 127 814 814 HOH HOH H . F 5 HOH 128 815 815 HOH HOH H . F 5 HOH 129 816 816 HOH HOH H . F 5 HOH 130 817 817 HOH HOH H . F 5 HOH 131 819 819 HOH HOH H . F 5 HOH 132 820 820 HOH HOH H . F 5 HOH 133 821 821 HOH HOH H . F 5 HOH 134 822 822 HOH HOH H . F 5 HOH 135 823 823 HOH HOH H . F 5 HOH 136 824 824 HOH HOH H . F 5 HOH 137 827 827 HOH HOH H . F 5 HOH 138 828 828 HOH HOH H . F 5 HOH 139 829 829 HOH HOH H . F 5 HOH 140 830 830 HOH HOH H . F 5 HOH 141 834 834 HOH HOH H . F 5 HOH 142 836 836 HOH HOH H . F 5 HOH 143 837 837 HOH HOH H . F 5 HOH 144 838 838 HOH HOH H . F 5 HOH 145 839 839 HOH HOH H . F 5 HOH 146 840 840 HOH HOH H . F 5 HOH 147 842 842 HOH HOH H . F 5 HOH 148 843 843 HOH HOH H . F 5 HOH 149 844 844 HOH HOH H . F 5 HOH 150 845 845 HOH HOH H . F 5 HOH 151 846 846 HOH HOH H . F 5 HOH 152 849 849 HOH HOH H . F 5 HOH 153 853 853 HOH HOH H . F 5 HOH 154 854 854 HOH HOH H . F 5 HOH 155 860 860 HOH HOH H . F 5 HOH 156 862 862 HOH HOH H . F 5 HOH 157 868 868 HOH HOH H . F 5 HOH 158 869 869 HOH HOH H . F 5 HOH 159 870 870 HOH HOH H . F 5 HOH 160 877 877 HOH HOH H . G 5 HOH 1 552 552 HOH HOH I . # _pdbx_molecule_features.prd_id PRD_000410 _pdbx_molecule_features.name ;amino({3-[(3R,5R,14S,16S,21aR)-5,14-dihydroxy-1,4,17-trioxo-16-(2-phenylethyl)icosahydro-1H-pyrrolo[1,2-d][1,4,7,11]tetraazacyclononadecin-3-yl]propyl}amino)methaniminium ; _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000410 _pdbx_molecule.asym_id D # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id C _pdbx_struct_mod_residue.label_comp_id TYS _pdbx_struct_mod_residue.label_seq_id 12 _pdbx_struct_mod_residue.auth_asym_id I _pdbx_struct_mod_residue.auth_comp_id TYS _pdbx_struct_mod_residue.auth_seq_id 63 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id TYR _pdbx_struct_mod_residue.details O-SULFO-L-TYROSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id H _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 457 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-03-18 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-12-12 5 'Structure model' 1 4 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Other 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' 11 5 'Structure model' Other 12 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_2 2 5 'Structure model' pdbx_database_status 3 5 'Structure model' pdbx_initial_refinement_model 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_database_status.process_site' 4 5 'Structure model' '_struct_conn.pdbx_dist_value' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 7 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 10 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 12 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 14 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 15 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 17 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 18 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 19 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 20 5 'Structure model' '_struct_ref_seq_dif.details' 21 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal R-AXIS 'data collection' II ? 1 R-AXIS 'data reduction' II ? 2 X-PLOR 'model building' . ? 3 PROLSQ refinement . ? 4 X-PLOR refinement . ? 5 R-AXIS 'data scaling' II ? 6 X-PLOR phasing . ? 7 # _pdbx_entry_details.entry_id 1AY6 _pdbx_entry_details.nonpolymer_details 'THE CYCLIC LIGAND 1ZV COVALENTLY BINDS TO THROMBIN HEAVY CHAIN BETWEEN C8 ATOM OF 1ZV5H AND OG ATOM OF SER195H, FORMING A HEMIKETAL' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH2 L ARG 14 D ? OE1 L GLU 14 H ? 1.73 2 1 NH2 H ARG 187 ? ? OD1 H ASP 222 ? ? 1.93 3 1 NH1 H ARG 50 ? ? O H LEU 108 ? ? 1.95 4 1 NE2 H HIS 57 ? ? O3 H 1ZV 5 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 NH1 H ARG 75 ? ? 1_555 OE2 I GLU 57 ? ? 2_555 2.06 2 1 O H THR 172 ? ? 1_555 O H HOH 422 ? ? 4_546 2.10 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD H GLU 77 ? ? OE2 H GLU 77 ? ? 1.168 1.252 -0.084 0.011 N 2 1 N H GLY 211 ? ? CA H GLY 211 ? ? 1.552 1.456 0.096 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OE1 L GLU 1 C ? CD L GLU 1 C ? OE2 L GLU 1 C ? 133.58 123.30 10.28 1.20 N 2 1 CG L GLU 1 C ? CD L GLU 1 C ? OE2 L GLU 1 C ? 104.95 118.30 -13.35 2.00 N 3 1 CB L ASP 1 A ? CG L ASP 1 A ? OD1 L ASP 1 A ? 106.96 118.30 -11.34 0.90 N 4 1 O L ASP 1 A ? C L ASP 1 A ? N L CYS 1 ? ? 132.77 122.70 10.07 1.60 Y 5 1 NH1 L ARG 4 ? ? CZ L ARG 4 ? ? NH2 L ARG 4 ? ? 111.79 119.40 -7.61 1.10 N 6 1 NE L ARG 4 ? ? CZ L ARG 4 ? ? NH2 L ARG 4 ? ? 125.87 120.30 5.57 0.50 N 7 1 N L ARG 14 D ? CA L ARG 14 D ? CB L ARG 14 D ? 127.90 110.60 17.30 1.80 N 8 1 CD L ARG 14 D ? NE L ARG 14 D ? CZ L ARG 14 D ? 114.46 123.60 -9.14 1.40 N 9 1 NE L ARG 14 D ? CZ L ARG 14 D ? NH1 L ARG 14 D ? 126.73 120.30 6.43 0.50 N 10 1 NE L ARG 14 D ? CZ L ARG 14 D ? NH2 L ARG 14 D ? 113.38 120.30 -6.92 0.50 N 11 1 CB L TYR 14 J ? CG L TYR 14 J ? CD2 L TYR 14 J ? 125.81 121.00 4.81 0.60 N 12 1 CB H ASP 21 ? ? CG H ASP 21 ? ? OD2 H ASP 21 ? ? 111.42 118.30 -6.88 0.90 N 13 1 CB H SER 27 ? ? CA H SER 27 ? ? C H SER 27 ? ? 123.32 110.10 13.22 1.90 N 14 1 NE H ARG 35 ? ? CZ H ARG 35 ? ? NH1 H ARG 35 ? ? 125.92 120.30 5.62 0.50 N 15 1 NE H ARG 35 ? ? CZ H ARG 35 ? ? NH2 H ARG 35 ? ? 113.64 120.30 -6.66 0.50 N 16 1 CG H LYS 36 ? ? CD H LYS 36 ? ? CE H LYS 36 ? ? 130.67 111.90 18.77 3.00 N 17 1 O H ALA 44 ? ? C H ALA 44 ? ? N H SER 45 ? ? 134.72 122.70 12.02 1.60 Y 18 1 CB H ASP 49 ? ? CG H ASP 49 ? ? OD2 H ASP 49 ? ? 125.60 118.30 7.30 0.90 N 19 1 CB H TYR 60 A ? CG H TYR 60 A ? CD2 H TYR 60 A ? 116.87 121.00 -4.13 0.60 N 20 1 CB H ASP 60 E ? CG H ASP 60 E ? OD1 H ASP 60 E ? 112.70 118.30 -5.60 0.90 N 21 1 CA H VAL 66 ? ? CB H VAL 66 ? ? CG1 H VAL 66 ? ? 120.69 110.90 9.79 1.50 N 22 1 N H THR 74 ? ? CA H THR 74 ? ? CB H THR 74 ? ? 95.49 110.30 -14.81 1.90 N 23 1 N H THR 74 ? ? CA H THR 74 ? ? C H THR 74 ? ? 127.26 111.00 16.26 2.70 N 24 1 NE H ARG 75 ? ? CZ H ARG 75 ? ? NH1 H ARG 75 ? ? 123.51 120.30 3.21 0.50 N 25 1 NH1 H ARG 77 A ? CZ H ARG 77 A ? NH2 H ARG 77 A ? 126.05 119.40 6.65 1.10 N 26 1 NE H ARG 77 A ? CZ H ARG 77 A ? NH2 H ARG 77 A ? 113.62 120.30 -6.68 0.50 N 27 1 CA H ARG 77 A ? C H ARG 77 A ? O H ARG 77 A ? 106.24 120.10 -13.86 2.10 N 28 1 CA H ARG 77 A ? C H ARG 77 A ? N H ASN 78 ? ? 132.42 117.20 15.22 2.20 Y 29 1 C H ARG 77 A ? N H ASN 78 ? ? CA H ASN 78 ? ? 105.10 121.70 -16.60 2.50 Y 30 1 CG H GLU 86 ? ? CD H GLU 86 ? ? OE1 H GLU 86 ? ? 103.35 118.30 -14.95 2.00 N 31 1 CG H GLU 86 ? ? CD H GLU 86 ? ? OE2 H GLU 86 ? ? 131.24 118.30 12.94 2.00 N 32 1 CE1 H HIS 91 ? ? NE2 H HIS 91 ? ? CD2 H HIS 91 ? ? 113.36 109.00 4.36 0.70 N 33 1 CD H ARG 93 ? ? NE H ARG 93 ? ? CZ H ARG 93 ? ? 152.32 123.60 28.72 1.40 N 34 1 NE H ARG 93 ? ? CZ H ARG 93 ? ? NH1 H ARG 93 ? ? 112.72 120.30 -7.58 0.50 N 35 1 NE H ARG 93 ? ? CZ H ARG 93 ? ? NH2 H ARG 93 ? ? 123.48 120.30 3.18 0.50 N 36 1 CB H TYR 94 ? ? CG H TYR 94 ? ? CD2 H TYR 94 ? ? 116.63 121.00 -4.37 0.60 N 37 1 CB H ARG 97 ? ? CG H ARG 97 ? ? CD H ARG 97 ? ? 135.51 111.60 23.91 2.60 N 38 1 CD H ARG 97 ? ? NE H ARG 97 ? ? CZ H ARG 97 ? ? 107.05 123.60 -16.55 1.40 N 39 1 CA H GLU 97 A ? CB H GLU 97 A ? CG H GLU 97 A ? 131.47 113.40 18.07 2.20 N 40 1 CB H ASP 100 ? ? CG H ASP 100 ? ? OD2 H ASP 100 ? ? 111.92 118.30 -6.38 0.90 N 41 1 NE H ARG 101 ? ? CZ H ARG 101 ? ? NH1 H ARG 101 ? ? 126.99 120.30 6.69 0.50 N 42 1 NE H ARG 101 ? ? CZ H ARG 101 ? ? NH2 H ARG 101 ? ? 110.26 120.30 -10.04 0.50 N 43 1 CB H ASP 102 ? ? CG H ASP 102 ? ? OD2 H ASP 102 ? ? 112.48 118.30 -5.82 0.90 N 44 1 CA H LEU 123 ? ? CB H LEU 123 ? ? CG H LEU 123 ? ? 132.48 115.30 17.18 2.30 N 45 1 CB H ASP 125 ? ? CG H ASP 125 ? ? OD1 H ASP 125 ? ? 108.21 118.30 -10.09 0.90 N 46 1 CB H ASP 125 ? ? CG H ASP 125 ? ? OD2 H ASP 125 ? ? 129.97 118.30 11.67 0.90 N 47 1 NE H ARG 126 ? ? CZ H ARG 126 ? ? NH1 H ARG 126 ? ? 128.32 120.30 8.02 0.50 N 48 1 NE H ARG 126 ? ? CZ H ARG 126 ? ? NH2 H ARG 126 ? ? 112.39 120.30 -7.91 0.50 N 49 1 CA H GLU 127 ? ? CB H GLU 127 ? ? CG H GLU 127 ? ? 129.00 113.40 15.60 2.20 N 50 1 CG H TYR 134 ? ? CD1 H TYR 134 ? ? CE1 H TYR 134 ? ? 126.13 121.30 4.83 0.80 N 51 1 CD1 H TYR 134 ? ? CE1 H TYR 134 ? ? CZ H TYR 134 ? ? 112.90 119.80 -6.90 0.90 N 52 1 NH1 H ARG 137 ? ? CZ H ARG 137 ? ? NH2 H ARG 137 ? ? 126.50 119.40 7.10 1.10 N 53 1 NE H ARG 137 ? ? CZ H ARG 137 ? ? NH1 H ARG 137 ? ? 114.57 120.30 -5.73 0.50 N 54 1 CA H GLY 142 ? ? C H GLY 142 ? ? O H GLY 142 ? ? 132.87 120.60 12.27 1.80 N 55 1 N H VAL 154 ? ? CA H VAL 154 ? ? CB H VAL 154 ? ? 96.02 111.50 -15.48 2.20 N 56 1 CA H VAL 154 ? ? CB H VAL 154 ? ? CG1 H VAL 154 ? ? 122.95 110.90 12.05 1.50 N 57 1 NE H ARG 165 ? ? CZ H ARG 165 ? ? NH2 H ARG 165 ? ? 123.58 120.30 3.28 0.50 N 58 1 CB H ASP 170 ? ? CG H ASP 170 ? ? OD2 H ASP 170 ? ? 110.20 118.30 -8.10 0.90 N 59 1 CG H ARG 173 ? ? CD H ARG 173 ? ? NE H ARG 173 ? ? 130.02 111.80 18.22 2.10 N 60 1 NH1 H ARG 173 ? ? CZ H ARG 173 ? ? NH2 H ARG 173 ? ? 111.44 119.40 -7.96 1.10 N 61 1 NE H ARG 173 ? ? CZ H ARG 173 ? ? NH2 H ARG 173 ? ? 126.35 120.30 6.05 0.50 N 62 1 CA H ILE 176 ? ? CB H ILE 176 ? ? CG2 H ILE 176 ? ? 124.37 110.90 13.47 2.00 N 63 1 CB H TYR 184 A ? CG H TYR 184 A ? CD1 H TYR 184 A ? 117.05 121.00 -3.95 0.60 N 64 1 CD H ARG 187 ? ? NE H ARG 187 ? ? CZ H ARG 187 ? ? 114.99 123.60 -8.61 1.40 N 65 1 NE H ARG 187 ? ? CZ H ARG 187 ? ? NH2 H ARG 187 ? ? 115.58 120.30 -4.72 0.50 N 66 1 CB H ASP 194 ? ? CG H ASP 194 ? ? OD2 H ASP 194 ? ? 128.48 118.30 10.18 0.90 N 67 1 CB H ASN 205 ? ? CA H ASN 205 ? ? C H ASN 205 ? ? 129.67 110.40 19.27 2.00 N 68 1 N H ASN 205 ? ? CA H ASN 205 ? ? CB H ASN 205 ? ? 93.96 110.60 -16.64 1.80 N 69 1 CB H ASN 205 ? ? CG H ASN 205 ? ? OD1 H ASN 205 ? ? 103.89 121.60 -17.71 2.00 N 70 1 NE H ARG 206 ? ? CZ H ARG 206 ? ? NH1 H ARG 206 ? ? 130.79 120.30 10.49 0.50 N 71 1 NE H ARG 206 ? ? CZ H ARG 206 ? ? NH2 H ARG 206 ? ? 110.75 120.30 -9.55 0.50 N 72 1 CB H TYR 208 ? ? CG H TYR 208 ? ? CD2 H TYR 208 ? ? 116.22 121.00 -4.78 0.60 N 73 1 CZ H TYR 208 ? ? CE2 H TYR 208 ? ? CD2 H TYR 208 ? ? 114.24 119.80 -5.56 0.90 N 74 1 OE1 H GLU 217 ? ? CD H GLU 217 ? ? OE2 H GLU 217 ? ? 115.57 123.30 -7.73 1.20 N 75 1 NE H ARG 221 A ? CZ H ARG 221 A ? NH1 H ARG 221 A ? 114.40 120.30 -5.90 0.50 N 76 1 NE H ARG 221 A ? CZ H ARG 221 A ? NH2 H ARG 221 A ? 123.69 120.30 3.39 0.50 N 77 1 CB H TYR 225 ? ? CG H TYR 225 ? ? CD1 H TYR 225 ? ? 115.43 121.00 -5.57 0.60 N 78 1 CG H TYR 225 ? ? CD2 H TYR 225 ? ? CE2 H TYR 225 ? ? 116.02 121.30 -5.28 0.80 N 79 1 CA H THR 229 ? ? CB H THR 229 ? ? CG2 H THR 229 ? ? 123.15 112.40 10.75 1.40 N 80 1 NH1 H ARG 233 ? ? CZ H ARG 233 ? ? NH2 H ARG 233 ? ? 112.41 119.40 -6.99 1.10 N 81 1 NE H ARG 233 ? ? CZ H ARG 233 ? ? NH1 H ARG 233 ? ? 133.16 120.30 12.86 0.50 N 82 1 NE H ARG 233 ? ? CZ H ARG 233 ? ? NH2 H ARG 233 ? ? 112.26 120.30 -8.04 0.50 N 83 1 CA H ASP 243 ? ? CB H ASP 243 ? ? CG H ASP 243 ? ? 126.86 113.40 13.46 2.20 N 84 1 CB H ASP 243 ? ? CG H ASP 243 ? ? OD1 H ASP 243 ? ? 125.04 118.30 6.74 0.90 N 85 1 C H PHE 245 ? ? N H GLY 246 ? ? CA H GLY 246 ? ? 109.45 122.30 -12.85 2.10 Y 86 1 O H GLY 246 ? ? C H GLY 246 ? ? N H GLU 247 ? ? 132.88 122.70 10.18 1.60 Y 87 1 OE1 H GLU 247 ? ? CD H GLU 247 ? ? OE2 H GLU 247 ? ? 131.73 123.30 8.43 1.20 N 88 1 CB I LEU 64 ? ? CA I LEU 64 ? ? C I LEU 64 ? ? 123.46 110.20 13.26 1.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA L 1 B ? 167.06 -41.47 2 1 PHE L 7 ? ? -131.38 -79.88 3 1 TYR L 14 J ? -91.84 46.93 4 1 TYR H 60 A ? -155.97 83.12 5 1 ASN H 60 G ? -158.74 66.85 6 1 HIS H 71 ? ? -129.12 -55.64 7 1 ARG H 77 A ? -24.75 -57.79 8 1 ILE H 79 ? ? -101.80 -64.05 9 1 GLU H 97 A ? -120.99 -51.59 10 1 ASN H 98 ? ? -141.13 10.87 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id GLU _pdbx_validate_main_chain_plane.auth_asym_id H _pdbx_validate_main_chain_plane.auth_seq_id 77 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 10.01 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG H 126 ? ? 0.154 'SIDE CHAIN' 2 1 ARG H 233 ? ? 0.113 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C9 ? H 1ZV 5 ? PLANAR . 2 1 C81 ? H 1ZV 5 ? PLANAR . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 H SER 36 A O ? B SER 22 O 2 1 Y 1 H LYS 81 ? CG ? B LYS 77 CG 3 1 Y 1 H LYS 81 ? CD ? B LYS 77 CD 4 1 Y 1 H LYS 81 ? CE ? B LYS 77 CE 5 1 Y 1 H LYS 81 ? NZ ? B LYS 77 NZ 6 1 Y 1 H GLN 244 ? CG ? B GLN 256 CG 7 1 Y 1 H GLN 244 ? CD ? B GLN 256 CD 8 1 Y 1 H GLN 244 ? OE1 ? B GLN 256 OE1 9 1 Y 1 H GLN 244 ? NE2 ? B GLN 256 NE2 10 1 Y 1 I GLU 58 ? CB ? C GLU 7 CB 11 1 Y 1 I GLU 58 ? CG ? C GLU 7 CG 12 1 Y 1 I GLU 58 ? CD ? C GLU 7 CD 13 1 Y 1 I GLU 58 ? OE1 ? C GLU 7 OE1 14 1 Y 1 I GLU 58 ? OE2 ? C GLU 7 OE2 15 1 Y 1 I GLU 61 ? CB ? C GLU 10 CB 16 1 Y 1 I GLU 61 ? CG ? C GLU 10 CG 17 1 Y 1 I GLU 61 ? CD ? C GLU 10 CD 18 1 Y 1 I GLU 61 ? OE1 ? C GLU 10 OE1 19 1 Y 1 I GLU 61 ? OE2 ? C GLU 10 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L THR 1 H A THR 1 2 1 Y 1 L PHE 1 G A PHE 2 3 1 Y 1 L GLY 1 F A GLY 3 4 1 Y 1 L SER 1 E A SER 4 5 1 Y 1 L ASP 14 L A ASP 34 6 1 Y 1 L GLY 14 M A GLY 35 7 1 Y 1 L ARG 14 N A ARG 36 8 1 Y 1 H TRP 147 A B TRP 148 9 1 Y 1 H THR 147 B B THR 149 10 1 Y 1 H ALA 147 C B ALA 150 11 1 Y 1 H ASN 147 D B ASN 151 12 1 Y 1 H VAL 147 E B VAL 152 13 1 Y 1 H GLY 147 F B GLY 153 14 1 Y 1 H LYS 147 G B LYS 154 15 1 Y 1 I ACE 52 ? C ACE 1 16 1 Y 1 I ASN 53 ? C ASN 2 17 1 Y 1 I GLU 54 ? C GLU 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 ;amino({3-[(3R,5R,14S,16S,21aR)-5,14-dihydroxy-1,4,17-trioxo-16-(2-phenylethyl)icosahydro-1H-pyrrolo[1,2-d][1,4,7,11]tetraazacyclononadecin-3-yl]propyl}amino)methaniminium ; 1ZV 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1TMB _pdbx_initial_refinement_model.details 'PDB ENTRY 1TMB' #