HEADER LIGASE 16-NOV-98 1B04 TITLE STRUCTURE OF THE ADENYLATION DOMAIN OF AN NAD+ DEPENDENT LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (DNA LIGASE); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ADENYLATION DOMAIN; COMPND 5 EC: 6.5.1.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 STRAIN: NCA 1503; SOURCE 5 GENE: LIG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D; SOURCE 11 EXPRESSION_SYSTEM_GENE: LIG KEYWDS LIGASE, DNA REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR M.R.SINGLETON,K.HAKANSSON,D.J.TIMSON,D.B.WIGLEY REVDAT 5 07-FEB-24 1B04 1 REMARK REVDAT 4 03-NOV-21 1B04 1 REMARK SEQADV REVDAT 3 24-FEB-09 1B04 1 VERSN REVDAT 2 01-APR-03 1B04 1 JRNL REVDAT 1 22-NOV-99 1B04 0 JRNL AUTH M.R.SINGLETON,K.HAKANSSON,D.J.TIMSON,D.B.WIGLEY JRNL TITL STRUCTURE OF THE ADENYLATION DOMAIN OF AN NAD+-DEPENDENT DNA JRNL TITL 2 LIGASE. JRNL REF STRUCTURE FOLD.DES. V. 7 35 1999 JRNL REFN ISSN 0969-2126 JRNL PMID 10368271 JRNL DOI 10.1016/S0969-2126(99)80007-0 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 25982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1301 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.016 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.056 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.061 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.027 ; 0.030 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.193 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.221 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.282 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.218 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 15.000; NULL REMARK 3 PLANAR (DEGREES) : 4.300 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 24.600; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 32.400; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.122 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.600 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.462 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.057 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1000008123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.94500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.86000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.86000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 169.41750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.86000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.86000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.47250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.86000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.86000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 169.41750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.86000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.86000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.47250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 112.94500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PROTEIN MONOMER IS BELIEVED TO BE THE PHYSIOLOGICALLY REMARK 300 ACTIVE SPECIES REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 188 REMARK 465 GLU A 189 REMARK 465 GLU A 314 REMARK 465 VAL A 315 REMARK 465 VAL A 316 REMARK 465 THR A 317 REMARK 465 THR A 318 REMARK 465 GLY B 188 REMARK 465 GLU B 189 REMARK 465 GLU B 314 REMARK 465 VAL B 315 REMARK 465 VAL B 316 REMARK 465 THR B 317 REMARK 465 THR B 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 91 OD1 ASP A 95 1.93 REMARK 500 OG SER A 235 OD2 ASP A 287 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N GLU A 36 OG SER B 31 7455 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 313 CB GLU A 313 CG 0.128 REMARK 500 GLU A 313 CG GLU A 313 CD 0.155 REMARK 500 GLU A 313 CD GLU A 313 OE1 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 3 CD - NE - CZ ANGL. DEV. = 18.0 DEGREES REMARK 500 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 8 CD - NE - CZ ANGL. DEV. = 25.9 DEGREES REMARK 500 ARG A 8 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 9 CD - NE - CZ ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 14 CD - NE - CZ ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 19 CD - NE - CZ ANGL. DEV. = 47.0 DEGREES REMARK 500 TYR A 24 N - CA - CB ANGL. DEV. = 12.4 DEGREES REMARK 500 TYR A 25 CB - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TYR A 25 CB - CG - CD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 29 CG - CD - NE ANGL. DEV. = 17.8 DEGREES REMARK 500 PRO A 30 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 PRO A 30 CA - N - CD ANGL. DEV. = -10.9 DEGREES REMARK 500 PRO A 30 CB - CA - C ANGL. DEV. = 19.3 DEGREES REMARK 500 SER A 31 C - N - CA ANGL. DEV. = 16.4 DEGREES REMARK 500 ASP A 34 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 ALA A 35 CB - CA - C ANGL. DEV. = 9.2 DEGREES REMARK 500 ALA A 35 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG A 39 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 LEU A 44 N - CA - CB ANGL. DEV. = 16.5 DEGREES REMARK 500 LEU A 44 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ASP A 58 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 63 CD - NE - CZ ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG A 63 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 GLU A 70 OE1 - CD - OE2 ANGL. DEV. = 8.2 DEGREES REMARK 500 PHE A 72 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 PHE A 72 CB - CG - CD2 ANGL. DEV. = -9.9 DEGREES REMARK 500 PHE A 72 CB - CG - CD1 ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 73 NH1 - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 9.0 DEGREES REMARK 500 LYS A 74 N - CA - CB ANGL. DEV. = 12.8 DEGREES REMARK 500 HIS A 77 C - N - CA ANGL. DEV. = 21.9 DEGREES REMARK 500 HIS A 77 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG A 78 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 GLU A 90 CA - C - O ANGL. DEV. = -15.7 DEGREES REMARK 500 GLU A 90 CA - C - N ANGL. DEV. = 16.9 DEGREES REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 97 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 ASP A 97 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 97 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 98 CD - NE - CZ ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 229 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 19 -70.47 -52.23 REMARK 500 TYR A 24 -71.66 -69.25 REMARK 500 PRO A 30 -144.60 30.86 REMARK 500 SER A 31 22.56 157.14 REMARK 500 VAL A 32 -149.18 -82.62 REMARK 500 PRO A 33 103.18 -35.09 REMARK 500 ALA A 35 -81.74 -42.78 REMARK 500 ASP A 58 51.01 -114.74 REMARK 500 HIS A 77 79.40 -10.99 REMARK 500 ARG A 78 87.23 102.90 REMARK 500 VAL A 79 121.18 75.58 REMARK 500 MET A 81 77.83 -108.82 REMARK 500 GLU A 90 123.74 -39.34 REMARK 500 LYS A 174 -58.62 -22.70 REMARK 500 SER A 176 -50.37 156.58 REMARK 500 LEU A 180 -76.10 -36.02 REMARK 500 LEU A 191 131.00 168.50 REMARK 500 ASP A 225 46.54 33.51 REMARK 500 GLN A 274 1.27 -66.06 REMARK 500 ALA A 299 42.23 35.81 REMARK 500 LYS A 300 -69.60 -151.83 REMARK 500 ALA A 312 47.49 -75.15 REMARK 500 ASP B 2 -97.94 7.16 REMARK 500 VAL B 26 -65.35 -104.34 REMARK 500 ARG B 29 84.89 -157.61 REMARK 500 PRO B 30 -138.55 -36.32 REMARK 500 SER B 31 35.15 136.37 REMARK 500 THR B 56 162.27 -49.01 REMARK 500 LYS B 74 -2.57 111.03 REMARK 500 VAL B 75 138.69 41.66 REMARK 500 ARG B 78 156.94 149.37 REMARK 500 VAL B 79 84.00 45.65 REMARK 500 SER B 83 99.16 -65.26 REMARK 500 ALA B 85 139.80 -31.72 REMARK 500 VAL B 104 -0.56 -141.74 REMARK 500 ARG B 135 -89.41 -127.79 REMARK 500 ALA B 299 -75.92 93.27 REMARK 500 LYS B 300 -13.70 -161.11 REMARK 500 PRO B 302 152.56 -49.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 29 10.28 REMARK 500 GLN A 242 -10.45 REMARK 500 VAL B 32 -10.04 REMARK 500 LEU B 69 10.09 REMARK 500 REMARK 500 REMARK: NULL DBREF 1B04 A 1 318 UNP O87703 DNLJ_BACST 1 318 DBREF 1B04 B 1 318 UNP O87703 DNLJ_BACST 1 318 SEQADV 1B04 ALA A 114 UNP O87703 LYS 114 ENGINEERED MUTATION SEQADV 1B04 ALA B 114 UNP O87703 LYS 114 ENGINEERED MUTATION SEQRES 1 A 318 MET ASP ARG GLN GLN ALA GLU ARG ARG ALA ALA GLU LEU SEQRES 2 A 318 ARG GLU LEU LEU ASN ARG TYR GLY TYR GLU TYR TYR VAL SEQRES 3 A 318 LEU ASP ARG PRO SER VAL PRO ASP ALA GLU TYR ASP ARG SEQRES 4 A 318 LEU MET GLN GLU LEU ILE ALA ILE GLU GLU GLN TYR PRO SEQRES 5 A 318 GLU LEU LYS THR SER ASP SER PRO THR GLN ARG ILE GLY SEQRES 6 A 318 GLY PRO PRO LEU GLU ALA PHE ARG LYS VAL ALA HIS ARG SEQRES 7 A 318 VAL PRO MET MET SER LEU ALA ASN ALA PHE GLY GLU GLY SEQRES 8 A 318 ASP LEU ARG ASP PHE ASP ARG ARG VAL ARG GLN GLU VAL SEQRES 9 A 318 GLY GLU ALA ALA TYR VAL CYS GLU LEU ALA ILE ASP GLY SEQRES 10 A 318 LEU ALA VAL SER VAL ARG TYR GLU ASP GLY TYR PHE VAL SEQRES 11 A 318 GLN GLY ALA THR ARG GLY ASP GLY THR THR GLY GLU ASP SEQRES 12 A 318 ILE THR GLU ASN LEU LYS THR ILE ARG SER LEU PRO LEU SEQRES 13 A 318 ARG LEU LYS GLU PRO VAL SER LEU GLU ALA ARG GLY GLU SEQRES 14 A 318 ALA PHE MET PRO LYS ALA SER PHE LEU ARG LEU ASN GLU SEQRES 15 A 318 GLU ARG LYS ALA ARG GLY GLU GLU LEU PHE ALA ASN PRO SEQRES 16 A 318 ARG ASN ALA ALA ALA GLY SER LEU ARG GLN LEU ASP PRO SEQRES 17 A 318 LYS VAL ALA ALA SER ARG GLN LEU ASP LEU PHE VAL TYR SEQRES 18 A 318 GLY LEU ALA ASP ALA GLU ALA LEU GLY ILE ALA SER HIS SEQRES 19 A 318 SER GLU ALA LEU ASP TYR LEU GLN ALA LEU GLY PHE LYS SEQRES 20 A 318 VAL ASN PRO GLU ARG ARG ARG CYS ALA ASN ILE ASP GLU SEQRES 21 A 318 VAL ILE ALA PHE VAL SER GLU TRP HIS ASP LYS ARG PRO SEQRES 22 A 318 GLN LEU PRO TYR GLU ILE ASP GLY ILE VAL ILE LYS VAL SEQRES 23 A 318 ASP SER PHE ALA GLN GLN ARG ALA LEU GLY ALA THR ALA SEQRES 24 A 318 LYS SER PRO ARG TRP ALA ILE ALA TYR LYS PHE PRO ALA SEQRES 25 A 318 GLU GLU VAL VAL THR THR SEQRES 1 B 318 MET ASP ARG GLN GLN ALA GLU ARG ARG ALA ALA GLU LEU SEQRES 2 B 318 ARG GLU LEU LEU ASN ARG TYR GLY TYR GLU TYR TYR VAL SEQRES 3 B 318 LEU ASP ARG PRO SER VAL PRO ASP ALA GLU TYR ASP ARG SEQRES 4 B 318 LEU MET GLN GLU LEU ILE ALA ILE GLU GLU GLN TYR PRO SEQRES 5 B 318 GLU LEU LYS THR SER ASP SER PRO THR GLN ARG ILE GLY SEQRES 6 B 318 GLY PRO PRO LEU GLU ALA PHE ARG LYS VAL ALA HIS ARG SEQRES 7 B 318 VAL PRO MET MET SER LEU ALA ASN ALA PHE GLY GLU GLY SEQRES 8 B 318 ASP LEU ARG ASP PHE ASP ARG ARG VAL ARG GLN GLU VAL SEQRES 9 B 318 GLY GLU ALA ALA TYR VAL CYS GLU LEU ALA ILE ASP GLY SEQRES 10 B 318 LEU ALA VAL SER VAL ARG TYR GLU ASP GLY TYR PHE VAL SEQRES 11 B 318 GLN GLY ALA THR ARG GLY ASP GLY THR THR GLY GLU ASP SEQRES 12 B 318 ILE THR GLU ASN LEU LYS THR ILE ARG SER LEU PRO LEU SEQRES 13 B 318 ARG LEU LYS GLU PRO VAL SER LEU GLU ALA ARG GLY GLU SEQRES 14 B 318 ALA PHE MET PRO LYS ALA SER PHE LEU ARG LEU ASN GLU SEQRES 15 B 318 GLU ARG LYS ALA ARG GLY GLU GLU LEU PHE ALA ASN PRO SEQRES 16 B 318 ARG ASN ALA ALA ALA GLY SER LEU ARG GLN LEU ASP PRO SEQRES 17 B 318 LYS VAL ALA ALA SER ARG GLN LEU ASP LEU PHE VAL TYR SEQRES 18 B 318 GLY LEU ALA ASP ALA GLU ALA LEU GLY ILE ALA SER HIS SEQRES 19 B 318 SER GLU ALA LEU ASP TYR LEU GLN ALA LEU GLY PHE LYS SEQRES 20 B 318 VAL ASN PRO GLU ARG ARG ARG CYS ALA ASN ILE ASP GLU SEQRES 21 B 318 VAL ILE ALA PHE VAL SER GLU TRP HIS ASP LYS ARG PRO SEQRES 22 B 318 GLN LEU PRO TYR GLU ILE ASP GLY ILE VAL ILE LYS VAL SEQRES 23 B 318 ASP SER PHE ALA GLN GLN ARG ALA LEU GLY ALA THR ALA SEQRES 24 B 318 LYS SER PRO ARG TRP ALA ILE ALA TYR LYS PHE PRO ALA SEQRES 25 B 318 GLU GLU VAL VAL THR THR FORMUL 3 HOH *190(H2 O) HELIX 1 1 ARG A 3 TYR A 25 1 23 HELIX 2 2 ALA A 35 GLN A 50 1 16 HELIX 3 3 PRO A 52 LEU A 54 5 3 HELIX 4 4 PRO A 60 ARG A 63 5 4 HELIX 5 5 ASP A 92 VAL A 104 1 13 HELIX 6 6 THR A 145 THR A 150 1 6 HELIX 7 7 LYS A 174 ALA A 186 1 13 HELIX 8 8 PRO A 195 ARG A 204 1 10 HELIX 9 9 PRO A 208 ARG A 214 1 7 HELIX 10 10 HIS A 234 LEU A 244 1 11 HELIX 11 11 ILE A 258 LYS A 271 1 14 HELIX 12 12 PHE A 289 LEU A 295 1 7 HELIX 13 13 ASP B 2 TYR B 25 5 24 HELIX 14 14 ASP B 34 GLN B 50 1 17 HELIX 15 15 PRO B 52 LEU B 54 5 3 HELIX 16 16 PRO B 60 ILE B 64 5 5 HELIX 17 17 GLU B 90 VAL B 104 1 15 HELIX 18 18 THR B 145 THR B 150 1 6 HELIX 19 19 LYS B 174 ARG B 187 1 14 HELIX 20 20 PRO B 195 ARG B 204 1 10 HELIX 21 21 PRO B 208 SER B 213 1 6 HELIX 22 22 HIS B 234 LEU B 244 1 11 HELIX 23 23 ILE B 258 GLN B 274 1 17 HELIX 24 24 PHE B 289 LEU B 295 1 7 SHEET 1 A 4 ARG A 253 CYS A 255 0 SHEET 2 A 4 TYR A 109 ILE A 115 -1 N CYS A 111 O ARG A 253 SHEET 3 A 4 ILE A 279 VAL A 286 -1 N LYS A 285 O VAL A 110 SHEET 4 A 4 ALA A 305 LYS A 309 -1 N TYR A 308 O ILE A 282 SHEET 1 B 4 TYR A 128 THR A 134 0 SHEET 2 B 4 LEU A 118 GLU A 125 -1 N GLU A 125 O TYR A 128 SHEET 3 B 4 LEU A 164 MET A 172 -1 N ALA A 170 O LEU A 118 SHEET 4 B 4 LEU A 216 LEU A 223 -1 N GLY A 222 O ARG A 167 SHEET 1 C 4 ARG B 253 CYS B 255 0 SHEET 2 C 4 TYR B 109 ILE B 115 -1 N CYS B 111 O ARG B 253 SHEET 3 C 4 ILE B 279 VAL B 286 -1 N LYS B 285 O VAL B 110 SHEET 4 C 4 ALA B 305 LYS B 309 -1 N TYR B 308 O ILE B 282 SHEET 1 D 4 TYR B 128 THR B 134 0 SHEET 2 D 4 LEU B 118 GLU B 125 -1 N GLU B 125 O TYR B 128 SHEET 3 D 4 LEU B 164 MET B 172 -1 N ALA B 170 O LEU B 118 SHEET 4 D 4 LEU B 216 LEU B 223 -1 N GLY B 222 O ARG B 167 CRYST1 95.720 95.720 225.890 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010447 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004427 0.00000