HEADER ISOMERASE 15-NOV-98 1B0Z TITLE THE CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE-AN ENZYME WITH TITLE 2 AUTOCRINE MOTILITY FACTOR ACTIVITY IN TUMOR CELLS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PHOSPHOGLUCOSE ISOMERASE); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUCOSE-6-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: PGIB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DF2145; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMMB67EH KEYWDS PHOSPHOGLUCOSE ISOMERASE, AUTOCRINEFACTOR, NEUROLEUKIN, KEYWDS 2 CRYSTALLOGRAPHY MOTILITY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-J.SUN,C.-C.CHOU,W.-S.CHEN,M.MENG,C.-D.HSIAO REVDAT 5 27-DEC-23 1B0Z 1 REMARK REVDAT 4 13-JUL-11 1B0Z 1 VERSN REVDAT 3 24-FEB-09 1B0Z 1 VERSN REVDAT 2 31-MAY-05 1B0Z 1 JRNL REMARK REVDAT 1 10-NOV-99 1B0Z 0 JRNL AUTH C.-C.CHOU,Y.-J.SUN,M.MENG,C.-D.HSIAO JRNL TITL THE CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE/AUTOCRINE JRNL TITL 2 MOTILITY FACTOR/NEUROLEUKIN COMPLEXED WITH ITS CARBOHYDRATE JRNL TITL 3 PHOSPHATE INHIBITORS SUGGESTS ITS SUBSTRATE/RECEPTOR JRNL TITL 4 RECOGNITION JRNL REF J.BIOL.CHEM. V. 275 23154 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10770936 JRNL DOI 10.1074/JBC.M002017200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.SHAW,H.MUIRHEAD REMARK 1 TITL CRYSTALLOGRAPHIC STRUCTURE ANALYSIS OF GLUCOSE-6-PHOSPHATE REMARK 1 TITL 2 ISOMERASE AT 3.5 A RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 109 475 1977 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 23447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2319 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2286 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 260 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.035 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3514 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 8.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.340 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-98. REMARK 100 THE DEPOSITION ID IS D_1000000084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-97 REMARK 200 TEMPERATURE (KELVIN) : 287.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24024 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY HANGING DROP REMARK 280 VAPOR DIFFUSION FROM 4-UL DROPLETS OF PROTEIN SOLUTION (15 MG/ML) REMARK 280 IN 50 MM PHOSPHATE BUFFER (PH7.0) AND 0.2 M AMMONIUM PHOSPHATE REMARK 280 AGAINST A RESERVOIR OF THE ABOVE BUFFER CONTAINING 0.4M AMMONIUM REMARK 280 PHOSPHATE., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.86500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 85.95000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.86500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.95000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.55000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.86500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.95000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.55000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.86500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 75.10000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 93.73000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -158.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 75.10000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 93.73000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 75.10000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 171.90000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 93.73000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 171.90000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 444 REMARK 465 LYS A 445 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 37 C GLY A 38 N -0.359 REMARK 500 LYS A 55 C ASN A 56 N 0.201 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 47 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 LYS A 55 O - C - N ANGL. DEV. = -22.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 54 90.91 78.84 REMARK 500 TYR A 84 -45.03 -134.35 REMARK 500 ASN A 103 -34.46 -39.70 REMARK 500 GLU A 128 122.07 -39.58 REMARK 500 THR A 177 -36.72 -141.66 REMARK 500 ARG A 202 -59.47 -177.20 REMARK 500 ALA A 208 76.89 -65.22 REMARK 500 VAL A 209 -159.56 40.37 REMARK 500 GLN A 413 70.16 -153.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 104 THR A 105 -147.20 REMARK 500 ARG A 202 TYR A 203 -120.29 REMARK 500 ALA A 208 VAL A 209 -144.85 REMARK 500 VAL A 209 GLY A 210 -147.48 REMARK 500 GLY A 210 LEU A 211 -147.39 REMARK 500 PHE A 301 THR A 302 38.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 153 0.07 SIDE CHAIN REMARK 500 TYR A 246 0.07 SIDE CHAIN REMARK 500 TYR A 311 0.07 SIDE CHAIN REMARK 500 ARG A 317 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 55 -26.94 REMARK 500 ARG A 202 -13.13 REMARK 500 TYR A 203 12.05 REMARK 500 ALA A 208 -11.60 REMARK 500 PHE A 301 10.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 1B0Z A 1 445 UNP P13376 G6PIB_BACST 1 445 SEQRES 1 A 445 MET ALA ILE SER PHE ASP TYR SER ASN ALA LEU PRO PHE SEQRES 2 A 445 MET GLN GLU ASN GLU LEU ASP TYR LEU SER GLU PHE VAL SEQRES 3 A 445 LYS ALA ALA HIS HIS MET LEU HIS GLU ARG LYS GLY PRO SEQRES 4 A 445 GLY SER ASP PHE LEU GLY TRP VAL ASP TRP PRO ILE ARG SEQRES 5 A 445 TYR ASP LYS ASN GLU PHE SER ARG ILE LYS GLN ALA ALA SEQRES 6 A 445 GLU ARG ILE ARG ASN HIS SER ASP ALA LEU VAL VAL ILE SEQRES 7 A 445 GLY ILE GLY GLY SER TYR LEU GLY ALA ARG ALA ALA ILE SEQRES 8 A 445 GLU ALA LEU SER HIS THR PHE HIS ASN GLN MET ASN ASP SEQRES 9 A 445 THR THR GLN ILE TYR PHE ALA GLY GLN ASN ILE SER SER SEQRES 10 A 445 THR TYR ILE SER HIS LEU LEU ASP VAL LEU GLU GLY LYS SEQRES 11 A 445 ASP LEU SER ILE ASN VAL ILE SER LYS SER GLY THR THR SEQRES 12 A 445 THR GLU PRO ALA ILE ALA PHE ARG ILE PHE ARG ASP TYR SEQRES 13 A 445 MET GLU LYS LYS TYR GLY LYS GLU GLU ALA ARG LYS ARG SEQRES 14 A 445 ILE TYR VAL THR THR ASP ARG THR LYS GLY ALA LEU LYS SEQRES 15 A 445 LYS LEU ALA ASP GLN GLU GLY TYR GLU THR PHE VAL ILE SEQRES 16 A 445 PRO ASP ASN ILE GLY GLY ARG TYR SER VAL LEU THR ALA SEQRES 17 A 445 VAL GLY LEU LEU PRO ILE ALA VAL ALA GLY LEU ASN ILE SEQRES 18 A 445 ASP ARG MET MET GLU GLY ALA ALA SER ALA TYR HIS LYS SEQRES 19 A 445 TYR ASN ASN PRO ASP LEU LEU THR ASN GLU SER TYR GLN SEQRES 20 A 445 TYR ALA ALA VAL ARG ASN ILE LEU TYR ARG LYS GLY LYS SEQRES 21 A 445 ALA ILE GLU LEU LEU VAL ASN TYR GLU PRO SER LEU HIS SEQRES 22 A 445 TYR VAL SER GLU TRP TRP LYS GLN LEU PHE GLY GLU SER SEQRES 23 A 445 GLU GLY LYS ASP GLN LYS GLY LEU PHE PRO ALA SER VAL SEQRES 24 A 445 ASP PHE THR THR ASP LEU HIS SER MET GLY GLN TYR VAL SEQRES 25 A 445 GLN GLU GLY ARG ARG ASN LEU ILE GLU THR VAL LEU HIS SEQRES 26 A 445 VAL LYS LYS PRO GLN ILE GLU LEU THR ILE GLN GLU ASP SEQRES 27 A 445 PRO GLU ASN ILE ASP GLY LEU ASN PHE LEU ALA GLY LYS SEQRES 28 A 445 THR LEU ASP GLU VAL ASN LYS LYS ALA PHE GLN GLY THR SEQRES 29 A 445 LEU LEU ALA HIS VAL ASP GLY GLY VAL PRO ASN LEU ILE SEQRES 30 A 445 VAL GLU LEU ASP GLU MET ASN GLU TYR THR PHE GLY GLU SEQRES 31 A 445 MET VAL TYR PHE PHE GLU LYS ALA CYS GLY ILE SER GLY SEQRES 32 A 445 HIS LEU LEU GLY VAL ASN PRO PHE ASP GLN PRO GLY VAL SEQRES 33 A 445 GLU ALA TYR LYS LYS ASN MET PHE ALA LEU LEU GLY LYS SEQRES 34 A 445 PRO GLY PHE GLU ASP GLU LYS ALA ALA LEU MET LYS ARG SEQRES 35 A 445 LEU SER LYS FORMUL 2 HOH *184(H2 O) HELIX 1 1 SER A 8 ALA A 10 5 3 HELIX 2 2 GLU A 16 HIS A 34 1 19 HELIX 3 3 SER A 41 PHE A 43 5 3 HELIX 4 4 GLY A 45 VAL A 47 5 3 HELIX 5 5 TRP A 49 ARG A 52 1 4 HELIX 6 6 LYS A 55 HIS A 71 1 17 HELIX 7 7 GLY A 81 SER A 83 5 3 HELIX 8 8 LEU A 85 LEU A 94 1 10 HELIX 9 9 HIS A 99 GLN A 101 5 3 HELIX 10 10 SER A 117 LEU A 127 1 11 HELIX 11 11 THR A 144 TYR A 161 1 18 HELIX 12 12 LYS A 163 ARG A 169 1 7 HELIX 13 13 ALA A 180 GLU A 188 1 9 HELIX 14 14 LEU A 211 ALA A 217 1 7 HELIX 15 15 ILE A 221 TYR A 235 1 15 HELIX 16 16 LEU A 240 THR A 242 5 3 HELIX 17 17 GLU A 244 ARG A 257 1 14 HELIX 18 18 PRO A 270 GLU A 287 5 18 HELIX 19 19 THR A 303 HIS A 306 5 4 HELIX 20 20 GLY A 309 GLU A 314 1 6 HELIX 21 21 LEU A 353 ASP A 370 1 18 HELIX 22 22 GLU A 385 LEU A 406 1 22 HELIX 23 23 VAL A 416 LEU A 426 1 11 HELIX 24 24 GLU A 433 LYS A 441 1 9 SHEET 1 A 5 ILE A 3 ASP A 6 0 SHEET 2 A 5 PRO A 374 LEU A 380 -1 N GLU A 379 O SER A 4 SHEET 3 A 5 LEU A 319 VAL A 326 1 N GLU A 321 O PRO A 374 SHEET 4 A 5 ILE A 262 ASN A 267 1 N ILE A 262 O ILE A 320 SHEET 5 A 5 PHE A 295 ASP A 300 1 N PHE A 295 O GLU A 263 SHEET 1 B 5 GLN A 107 ALA A 111 0 SHEET 2 B 5 ALA A 74 ILE A 78 1 N LEU A 75 O GLN A 107 SHEET 3 B 5 LEU A 132 ILE A 137 1 N SER A 133 O ALA A 74 SHEET 4 B 5 ILE A 170 THR A 174 1 N TYR A 171 O ILE A 134 SHEET 5 B 5 GLU A 191 VAL A 194 1 N GLU A 191 O VAL A 172 CRYST1 75.100 93.730 171.900 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013315 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010669 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005817 0.00000