data_1B2M # _entry.id 1B2M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1B2M pdb_00001b2m 10.2210/pdb1b2m/pdb NDB PR0012 ? ? RCSB RCSB000147 ? ? WWPDB D_1000000147 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-03-25 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-02-01 5 'Structure model' 1 4 2023-08-09 6 'Structure model' 1 5 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' struct_conn 6 6 'Structure model' pdbx_entry_details 7 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1B2M _pdbx_database_status.recvd_initial_deposition_date 1998-11-27 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Arni, R.K.' 1 'Watanabe, L.' 2 'Ward, R.J.' 3 'Kreitman, R.J.' 4 'Kumar, K.' 5 'Walz Jr., F.G.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Three-dimensional structure of ribonuclease T1 complexed with an isosteric phosphonate substrate analogue of GpU: alternate substrate binding modes and catalysis. ; Biochemistry 38 2452 2461 1999 BICHAW US 0006-2960 0033 ? 10029539 10.1021/bi982612q 1 ;Three-Dimensional Structure of Gln 25-Ribonuclease T1 at 1.84 Angstroms Resolution: Structural Variations at the Base Recognition and Catalytic Sites ; Biochemistry 31 3126 3135 1992 BICHAW US 0006-2960 0033 ? ? ? 2 ;Crystal Structure of Guanosine-Free Ribonuclease T1, Complexed with Vanadate(V), Suggests Conformational Change Upon Substrate Binding ; Biochemistry 28 7592 ? 1989 BICHAW US 0006-2960 0033 ? ? ? 3 ;Three Dimensional Structures of the Ribonuclease T1 2'-Gmp Complex at 1.9 Angstroms Resolution ; J.Biol.Chem. 263 15358 ? 1988 JBCHA3 US 0021-9258 0071 ? ? ? 4 ;Restrained Least-Squares Refinement of the Crystal Structure of the Ribonuclease T1 2'-Guanylic Acid Complex at 1.9 Angstroms Resolution ; 'Acta Crystallogr.,Sect.B' 43 548 ? 1987 ASBSDK DK 0108-7681 0622 ? ? ? 5 'Structure and Function of the Enzyme Ribonuclease T1' 'Fresenius Z.Anal.Chem.' 327 67 ? 1987 ZACFAU GW 0016-1152 0596 ? ? ? 6 'Crystallization of Ribonuclease T1' J.Mol.Biol. 136 95 ? 1980 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Arni, R.K.' 1 ? primary 'Watanabe, L.' 2 ? primary 'Ward, R.J.' 3 ? primary 'Kreitman, R.J.' 4 ? primary 'Kumar, K.' 5 ? primary 'Walz Jr., F.G.' 6 ? 1 'Arni, R.K.' 7 ? 1 'Pal, G.P.' 8 ? 1 'Ravichandran, K.G.' 9 ? 1 'Tulinsky, A.' 10 ? 1 'Metcalf Jr., P.F.G.W.' 11 ? 2 'Kostrewa, D.' 12 ? 2 'Choe, H.-W.' 13 ? 2 'Heinemann, U.' 14 ? 2 'Saenger, W.' 15 ? 3 'Arni, R.' 16 ? 3 'Heinemann, U.' 17 ? 3 'Tokuoka, R.' 18 ? 3 'Saenger, W.' 19 ? 4 'Arni, R.' 20 ? 4 'Heinemann, V.' 21 ? 4 'Maslowska, M.' 22 ? 4 'Tokuoka, R.' 23 ? 4 'Saenger, W.' 24 ? 5 'Arni, R.' 25 ? 5 'Heinemann, U.' 26 ? 5 'Saenger, W.' 27 ? 6 'Martin, P.O.' 28 ? 6 'Tulinsky, A.' 29 ? 6 'Walz, F.G.' 30 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*(U34))-3'" 620.441 3 ? ? ? ? 2 polymer nat 'RIBONUCLEASE T1' 11093.644 2 3.1.27.3 'GLN 25 VARIANT' ? ;RNASE T1 COMPLEXED WITH 5'-R(*GP*(CH2)U)-3 ; 3 water nat water 18.015 92 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'G(U34)' GU C,D,E ? 2 'polypeptide(L)' no no ;ACDYTCGSNCYSSSDVSTAQAAGYQLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVF NENNQLAGVITHTGASGNNFVECT ; ;ACDYTCGSNCYSSSDVSTAQAAGYQLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVF NENNQLAGVITHTGASGNNFVECT ; A,B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U34 n 2 1 ALA n 2 2 CYS n 2 3 ASP n 2 4 TYR n 2 5 THR n 2 6 CYS n 2 7 GLY n 2 8 SER n 2 9 ASN n 2 10 CYS n 2 11 TYR n 2 12 SER n 2 13 SER n 2 14 SER n 2 15 ASP n 2 16 VAL n 2 17 SER n 2 18 THR n 2 19 ALA n 2 20 GLN n 2 21 ALA n 2 22 ALA n 2 23 GLY n 2 24 TYR n 2 25 GLN n 2 26 LEU n 2 27 HIS n 2 28 GLU n 2 29 ASP n 2 30 GLY n 2 31 GLU n 2 32 THR n 2 33 VAL n 2 34 GLY n 2 35 SER n 2 36 ASN n 2 37 SER n 2 38 TYR n 2 39 PRO n 2 40 HIS n 2 41 LYS n 2 42 TYR n 2 43 ASN n 2 44 ASN n 2 45 TYR n 2 46 GLU n 2 47 GLY n 2 48 PHE n 2 49 ASP n 2 50 PHE n 2 51 SER n 2 52 VAL n 2 53 SER n 2 54 SER n 2 55 PRO n 2 56 TYR n 2 57 TYR n 2 58 GLU n 2 59 TRP n 2 60 PRO n 2 61 ILE n 2 62 LEU n 2 63 SER n 2 64 SER n 2 65 GLY n 2 66 ASP n 2 67 VAL n 2 68 TYR n 2 69 SER n 2 70 GLY n 2 71 GLY n 2 72 SER n 2 73 PRO n 2 74 GLY n 2 75 ALA n 2 76 ASP n 2 77 ARG n 2 78 VAL n 2 79 VAL n 2 80 PHE n 2 81 ASN n 2 82 GLU n 2 83 ASN n 2 84 ASN n 2 85 GLN n 2 86 LEU n 2 87 ALA n 2 88 GLY n 2 89 VAL n 2 90 ILE n 2 91 THR n 2 92 HIS n 2 93 THR n 2 94 GLY n 2 95 ALA n 2 96 SER n 2 97 GLY n 2 98 ASN n 2 99 ASN n 2 100 PHE n 2 101 VAL n 2 102 GLU n 2 103 CYS n 2 104 THR n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Aspergillus oryzae' _entity_src_nat.pdbx_ncbi_taxonomy_id 5062 _entity_src_nat.genus Aspergillus _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U34 'RNA linking' n ;URIDINE 5'-MONOMETHYLPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 105 105 G G C . n A 1 2 U34 2 106 106 U34 +U C . n B 1 1 G 1 105 105 G G D . n B 1 2 U34 2 106 106 U34 +U D . n C 1 1 G 1 105 105 G G E . n C 1 2 U34 2 106 106 U34 +U E . n D 2 1 ALA 1 1 1 ALA ALA A . n D 2 2 CYS 2 2 2 CYS CYS A . n D 2 3 ASP 3 3 3 ASP ASP A . n D 2 4 TYR 4 4 4 TYR TYR A . n D 2 5 THR 5 5 5 THR THR A . n D 2 6 CYS 6 6 6 CYS CYS A . n D 2 7 GLY 7 7 7 GLY GLY A . n D 2 8 SER 8 8 8 SER SER A . n D 2 9 ASN 9 9 9 ASN ASN A . n D 2 10 CYS 10 10 10 CYS CYS A . n D 2 11 TYR 11 11 11 TYR TYR A . n D 2 12 SER 12 12 12 SER SER A . n D 2 13 SER 13 13 13 SER SER A . n D 2 14 SER 14 14 14 SER SER A . n D 2 15 ASP 15 15 15 ASP ASP A . n D 2 16 VAL 16 16 16 VAL VAL A . n D 2 17 SER 17 17 17 SER SER A . n D 2 18 THR 18 18 18 THR THR A . n D 2 19 ALA 19 19 19 ALA ALA A . n D 2 20 GLN 20 20 20 GLN GLN A . n D 2 21 ALA 21 21 21 ALA ALA A . n D 2 22 ALA 22 22 22 ALA ALA A . n D 2 23 GLY 23 23 23 GLY GLY A . n D 2 24 TYR 24 24 24 TYR TYR A . n D 2 25 GLN 25 25 25 GLN GLN A . n D 2 26 LEU 26 26 26 LEU LEU A . n D 2 27 HIS 27 27 27 HIS HIS A . n D 2 28 GLU 28 28 28 GLU GLU A . n D 2 29 ASP 29 29 29 ASP ASP A . n D 2 30 GLY 30 30 30 GLY GLY A . n D 2 31 GLU 31 31 31 GLU GLU A . n D 2 32 THR 32 32 32 THR THR A . n D 2 33 VAL 33 33 33 VAL VAL A . n D 2 34 GLY 34 34 34 GLY GLY A . n D 2 35 SER 35 35 35 SER SER A . n D 2 36 ASN 36 36 36 ASN ASN A . n D 2 37 SER 37 37 37 SER SER A . n D 2 38 TYR 38 38 38 TYR TYR A . n D 2 39 PRO 39 39 39 PRO PRO A . n D 2 40 HIS 40 40 40 HIS HIS A . n D 2 41 LYS 41 41 41 LYS LYS A . n D 2 42 TYR 42 42 42 TYR TYR A . n D 2 43 ASN 43 43 43 ASN ASN A . n D 2 44 ASN 44 44 44 ASN ASN A . n D 2 45 TYR 45 45 45 TYR TYR A . n D 2 46 GLU 46 46 46 GLU GLU A . n D 2 47 GLY 47 47 47 GLY GLY A . n D 2 48 PHE 48 48 48 PHE PHE A . n D 2 49 ASP 49 49 49 ASP ASP A . n D 2 50 PHE 50 50 50 PHE PHE A . n D 2 51 SER 51 51 51 SER SER A . n D 2 52 VAL 52 52 52 VAL VAL A . n D 2 53 SER 53 53 53 SER SER A . n D 2 54 SER 54 54 54 SER SER A . n D 2 55 PRO 55 55 55 PRO PRO A . n D 2 56 TYR 56 56 56 TYR TYR A . n D 2 57 TYR 57 57 57 TYR TYR A . n D 2 58 GLU 58 58 58 GLU GLU A . n D 2 59 TRP 59 59 59 TRP TRP A . n D 2 60 PRO 60 60 60 PRO PRO A . n D 2 61 ILE 61 61 61 ILE ILE A . n D 2 62 LEU 62 62 62 LEU LEU A . n D 2 63 SER 63 63 63 SER SER A . n D 2 64 SER 64 64 64 SER SER A . n D 2 65 GLY 65 65 65 GLY GLY A . n D 2 66 ASP 66 66 66 ASP ASP A . n D 2 67 VAL 67 67 67 VAL VAL A . n D 2 68 TYR 68 68 68 TYR TYR A . n D 2 69 SER 69 69 69 SER SER A . n D 2 70 GLY 70 70 70 GLY GLY A . n D 2 71 GLY 71 71 71 GLY GLY A . n D 2 72 SER 72 72 72 SER SER A . n D 2 73 PRO 73 73 73 PRO PRO A . n D 2 74 GLY 74 74 74 GLY GLY A . n D 2 75 ALA 75 75 75 ALA ALA A . n D 2 76 ASP 76 76 76 ASP ASP A . n D 2 77 ARG 77 77 77 ARG ARG A . n D 2 78 VAL 78 78 78 VAL VAL A . n D 2 79 VAL 79 79 79 VAL VAL A . n D 2 80 PHE 80 80 80 PHE PHE A . n D 2 81 ASN 81 81 81 ASN ASN A . n D 2 82 GLU 82 82 82 GLU GLU A . n D 2 83 ASN 83 83 83 ASN ASN A . n D 2 84 ASN 84 84 84 ASN ASN A . n D 2 85 GLN 85 85 85 GLN GLN A . n D 2 86 LEU 86 86 86 LEU LEU A . n D 2 87 ALA 87 87 87 ALA ALA A . n D 2 88 GLY 88 88 88 GLY GLY A . n D 2 89 VAL 89 89 89 VAL VAL A . n D 2 90 ILE 90 90 90 ILE ILE A . n D 2 91 THR 91 91 91 THR THR A . n D 2 92 HIS 92 92 92 HIS HIS A . n D 2 93 THR 93 93 93 THR THR A . n D 2 94 GLY 94 94 94 GLY GLY A . n D 2 95 ALA 95 95 95 ALA ALA A . n D 2 96 SER 96 96 96 SER SER A . n D 2 97 GLY 97 97 97 GLY GLY A . n D 2 98 ASN 98 98 98 ASN ASN A . n D 2 99 ASN 99 99 99 ASN ASN A . n D 2 100 PHE 100 100 100 PHE PHE A . n D 2 101 VAL 101 101 101 VAL VAL A . n D 2 102 GLU 102 102 102 GLU GLU A . n D 2 103 CYS 103 103 103 CYS CYS A . n D 2 104 THR 104 104 104 THR THR A . n E 2 1 ALA 1 1 1 ALA ALA B . n E 2 2 CYS 2 2 2 CYS CYS B . n E 2 3 ASP 3 3 3 ASP ASP B . n E 2 4 TYR 4 4 4 TYR TYR B . n E 2 5 THR 5 5 5 THR THR B . n E 2 6 CYS 6 6 6 CYS CYS B . n E 2 7 GLY 7 7 7 GLY GLY B . n E 2 8 SER 8 8 8 SER SER B . n E 2 9 ASN 9 9 9 ASN ASN B . n E 2 10 CYS 10 10 10 CYS CYS B . n E 2 11 TYR 11 11 11 TYR TYR B . n E 2 12 SER 12 12 12 SER SER B . n E 2 13 SER 13 13 13 SER SER B . n E 2 14 SER 14 14 14 SER SER B . n E 2 15 ASP 15 15 15 ASP ASP B . n E 2 16 VAL 16 16 16 VAL VAL B . n E 2 17 SER 17 17 17 SER SER B . n E 2 18 THR 18 18 18 THR THR B . n E 2 19 ALA 19 19 19 ALA ALA B . n E 2 20 GLN 20 20 20 GLN GLN B . n E 2 21 ALA 21 21 21 ALA ALA B . n E 2 22 ALA 22 22 22 ALA ALA B . n E 2 23 GLY 23 23 23 GLY GLY B . n E 2 24 TYR 24 24 24 TYR TYR B . n E 2 25 GLN 25 25 25 GLN GLN B . n E 2 26 LEU 26 26 26 LEU LEU B . n E 2 27 HIS 27 27 27 HIS HIS B . n E 2 28 GLU 28 28 28 GLU GLU B . n E 2 29 ASP 29 29 29 ASP ASP B . n E 2 30 GLY 30 30 30 GLY GLY B . n E 2 31 GLU 31 31 31 GLU GLU B . n E 2 32 THR 32 32 32 THR THR B . n E 2 33 VAL 33 33 33 VAL VAL B . n E 2 34 GLY 34 34 34 GLY GLY B . n E 2 35 SER 35 35 35 SER SER B . n E 2 36 ASN 36 36 36 ASN ASN B . n E 2 37 SER 37 37 37 SER SER B . n E 2 38 TYR 38 38 38 TYR TYR B . n E 2 39 PRO 39 39 39 PRO PRO B . n E 2 40 HIS 40 40 40 HIS HIS B . n E 2 41 LYS 41 41 41 LYS LYS B . n E 2 42 TYR 42 42 42 TYR TYR B . n E 2 43 ASN 43 43 43 ASN ASN B . n E 2 44 ASN 44 44 44 ASN ASN B . n E 2 45 TYR 45 45 45 TYR TYR B . n E 2 46 GLU 46 46 46 GLU GLU B . n E 2 47 GLY 47 47 47 GLY GLY B . n E 2 48 PHE 48 48 48 PHE PHE B . n E 2 49 ASP 49 49 49 ASP ASP B . n E 2 50 PHE 50 50 50 PHE PHE B . n E 2 51 SER 51 51 51 SER SER B . n E 2 52 VAL 52 52 52 VAL VAL B . n E 2 53 SER 53 53 53 SER SER B . n E 2 54 SER 54 54 54 SER SER B . n E 2 55 PRO 55 55 55 PRO PRO B . n E 2 56 TYR 56 56 56 TYR TYR B . n E 2 57 TYR 57 57 57 TYR TYR B . n E 2 58 GLU 58 58 58 GLU GLU B . n E 2 59 TRP 59 59 59 TRP TRP B . n E 2 60 PRO 60 60 60 PRO PRO B . n E 2 61 ILE 61 61 61 ILE ILE B . n E 2 62 LEU 62 62 62 LEU LEU B . n E 2 63 SER 63 63 63 SER SER B . n E 2 64 SER 64 64 64 SER SER B . n E 2 65 GLY 65 65 65 GLY GLY B . n E 2 66 ASP 66 66 66 ASP ASP B . n E 2 67 VAL 67 67 67 VAL VAL B . n E 2 68 TYR 68 68 68 TYR TYR B . n E 2 69 SER 69 69 69 SER SER B . n E 2 70 GLY 70 70 70 GLY GLY B . n E 2 71 GLY 71 71 71 GLY GLY B . n E 2 72 SER 72 72 72 SER SER B . n E 2 73 PRO 73 73 73 PRO PRO B . n E 2 74 GLY 74 74 74 GLY GLY B . n E 2 75 ALA 75 75 75 ALA ALA B . n E 2 76 ASP 76 76 76 ASP ASP B . n E 2 77 ARG 77 77 77 ARG ARG B . n E 2 78 VAL 78 78 78 VAL VAL B . n E 2 79 VAL 79 79 79 VAL VAL B . n E 2 80 PHE 80 80 80 PHE PHE B . n E 2 81 ASN 81 81 81 ASN ASN B . n E 2 82 GLU 82 82 82 GLU GLU B . n E 2 83 ASN 83 83 83 ASN ASN B . n E 2 84 ASN 84 84 84 ASN ASN B . n E 2 85 GLN 85 85 85 GLN GLN B . n E 2 86 LEU 86 86 86 LEU LEU B . n E 2 87 ALA 87 87 87 ALA ALA B . n E 2 88 GLY 88 88 88 GLY GLY B . n E 2 89 VAL 89 89 89 VAL VAL B . n E 2 90 ILE 90 90 90 ILE ILE B . n E 2 91 THR 91 91 91 THR THR B . n E 2 92 HIS 92 92 92 HIS HIS B . n E 2 93 THR 93 93 93 THR THR B . n E 2 94 GLY 94 94 94 GLY GLY B . n E 2 95 ALA 95 95 95 ALA ALA B . n E 2 96 SER 96 96 96 SER SER B . n E 2 97 GLY 97 97 97 GLY GLY B . n E 2 98 ASN 98 98 98 ASN ASN B . n E 2 99 ASN 99 99 99 ASN ASN B . n E 2 100 PHE 100 100 100 PHE PHE B . n E 2 101 VAL 101 101 101 VAL VAL B . n E 2 102 GLU 102 102 102 GLU GLU B . n E 2 103 CYS 103 103 103 CYS CYS B . n E 2 104 THR 104 104 104 THR THR B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 HOH 1 137 137 HOH HOH C . G 3 HOH 1 188 188 HOH HOH D . G 3 HOH 2 195 195 HOH HOH D . H 3 HOH 1 107 107 HOH HOH A . H 3 HOH 2 108 108 HOH HOH A . H 3 HOH 3 110 110 HOH HOH A . H 3 HOH 4 111 111 HOH HOH A . H 3 HOH 5 112 112 HOH HOH A . H 3 HOH 6 113 113 HOH HOH A . H 3 HOH 7 114 114 HOH HOH A . H 3 HOH 8 115 115 HOH HOH A . H 3 HOH 9 116 116 HOH HOH A . H 3 HOH 10 117 117 HOH HOH A . H 3 HOH 11 118 118 HOH HOH A . H 3 HOH 12 119 119 HOH HOH A . H 3 HOH 13 120 120 HOH HOH A . H 3 HOH 14 127 127 HOH HOH A . H 3 HOH 15 133 133 HOH HOH A . H 3 HOH 16 134 134 HOH HOH A . H 3 HOH 17 135 135 HOH HOH A . H 3 HOH 18 139 139 HOH HOH A . H 3 HOH 19 140 140 HOH HOH A . H 3 HOH 20 141 141 HOH HOH A . H 3 HOH 21 142 142 HOH HOH A . H 3 HOH 22 144 144 HOH HOH A . H 3 HOH 23 145 145 HOH HOH A . H 3 HOH 24 146 146 HOH HOH A . H 3 HOH 25 147 147 HOH HOH A . H 3 HOH 26 148 148 HOH HOH A . H 3 HOH 27 149 149 HOH HOH A . H 3 HOH 28 155 155 HOH HOH A . H 3 HOH 29 156 156 HOH HOH A . H 3 HOH 30 157 157 HOH HOH A . H 3 HOH 31 169 169 HOH HOH A . H 3 HOH 32 170 170 HOH HOH A . H 3 HOH 33 171 171 HOH HOH A . H 3 HOH 34 177 177 HOH HOH A . H 3 HOH 35 178 178 HOH HOH A . H 3 HOH 36 179 179 HOH HOH A . H 3 HOH 37 180 180 HOH HOH A . H 3 HOH 38 181 181 HOH HOH A . H 3 HOH 39 182 182 HOH HOH A . H 3 HOH 40 183 183 HOH HOH A . H 3 HOH 41 184 184 HOH HOH A . H 3 HOH 42 185 185 HOH HOH A . H 3 HOH 43 186 186 HOH HOH A . H 3 HOH 44 187 187 HOH HOH A . H 3 HOH 45 189 189 HOH HOH A . H 3 HOH 46 190 190 HOH HOH A . H 3 HOH 47 191 191 HOH HOH A . H 3 HOH 48 194 194 HOH HOH A . I 3 HOH 1 109 109 HOH HOH B . I 3 HOH 2 121 121 HOH HOH B . I 3 HOH 3 122 122 HOH HOH B . I 3 HOH 4 123 123 HOH HOH B . I 3 HOH 5 124 124 HOH HOH B . I 3 HOH 6 125 125 HOH HOH B . I 3 HOH 7 126 126 HOH HOH B . I 3 HOH 8 128 128 HOH HOH B . I 3 HOH 9 129 129 HOH HOH B . I 3 HOH 10 130 130 HOH HOH B . I 3 HOH 11 131 131 HOH HOH B . I 3 HOH 12 132 132 HOH HOH B . I 3 HOH 13 136 136 HOH HOH B . I 3 HOH 14 138 138 HOH HOH B . I 3 HOH 15 143 143 HOH HOH B . I 3 HOH 16 150 150 HOH HOH B . I 3 HOH 17 151 151 HOH HOH B . I 3 HOH 18 152 152 HOH HOH B . I 3 HOH 19 153 153 HOH HOH B . I 3 HOH 20 154 154 HOH HOH B . I 3 HOH 21 158 158 HOH HOH B . I 3 HOH 22 159 159 HOH HOH B . I 3 HOH 23 160 160 HOH HOH B . I 3 HOH 24 161 161 HOH HOH B . I 3 HOH 25 162 162 HOH HOH B . I 3 HOH 26 163 163 HOH HOH B . I 3 HOH 27 164 164 HOH HOH B . I 3 HOH 28 165 165 HOH HOH B . I 3 HOH 29 166 166 HOH HOH B . I 3 HOH 30 167 167 HOH HOH B . I 3 HOH 31 168 168 HOH HOH B . I 3 HOH 32 172 172 HOH HOH B . I 3 HOH 33 173 173 HOH HOH B . I 3 HOH 34 174 174 HOH HOH B . I 3 HOH 35 175 175 HOH HOH B . I 3 HOH 36 176 176 HOH HOH B . I 3 HOH 37 192 192 HOH HOH B . I 3 HOH 38 193 193 HOH HOH B . I 3 HOH 39 196 196 HOH HOH B . I 3 HOH 40 197 197 HOH HOH B . I 3 HOH 41 198 198 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C U34 106 ? OXT ? A U34 2 OXT 2 1 Y 1 D U34 106 ? OXT ? B U34 2 OXT 3 1 Y 1 E U34 106 ? OXT ? C U34 2 OXT # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.1 ? 2 # _cell.entry_id 1B2M _cell.length_a 69.910 _cell.length_b 90.290 _cell.length_c 33.980 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1B2M _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1B2M _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.82 _exptl_crystal.density_Matthews 2.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.10 _exptl_crystal_grow.pdbx_details 'pH 4.10' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'SODIUM ACETATE' ? ? ? 1 2 1 TRIS ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 'PEG 4000' ? ? ? 1 5 2 'PEG 4000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 287.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1B2M _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.000 _reflns.number_obs 11298 _reflns.number_all ? _reflns.percent_possible_obs 75.000 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.64 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_k_min ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1B2M _refine.ls_number_reflns_obs 9879 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs 75.000 _refine.ls_R_factor_obs 0.187 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.187 _refine.ls_R_factor_R_free 0.254 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 1RNT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1562 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 1774 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.74 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.42 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? -0.070100 0.967600 -0.242700 -0.524700 0.171100 0.833900 0.848400 0.185800 0.495700 51.29900 4.64900 -14.75900 2 given ? 0.541300 0.640400 0.546900 0.040900 0.627200 -0.777800 -0.839800 0.443300 0.313300 -16.61400 43.66600 67.11300 # _database_PDB_matrix.entry_id 1B2M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1B2M _struct.title ;THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1B2M _struct_keywords.pdbx_keywords HYDROLASE/RNA _struct_keywords.text 'HYDROLASE, ENDORIBONUCLEASE, HYDROLASE/RNA, HYDROLASE-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RNT1_ASPOR 2 ? ? P00651 ? 2 PDB 1B2M 1 ? ? 1B2M ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1B2M A 1 ? 104 ? P00651 27 ? 130 ? 1 104 2 1 1B2M B 1 ? 104 ? P00651 27 ? 130 ? 1 104 3 2 1B2M C 1 ? 2 ? 1B2M 105 ? 106 ? 105 106 4 2 1B2M D 1 ? 2 ? 1B2M 105 ? 106 ? 105 106 5 2 1B2M E 1 ? 2 ? 1B2M 105 ? 106 ? 105 106 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,F,H 2 1 B,C,E,G,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER D 13 ? GLU D 28 ? SER A 13 GLU A 28 1 ? 16 HELX_P HELX_P2 2 SER E 13 ? ASP E 29 ? SER B 13 ASP B 29 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? D CYS 2 SG ? ? ? 1_555 D CYS 10 SG ? ? A CYS 2 A CYS 10 1_555 ? ? ? ? ? ? ? 2.016 ? ? disulf2 disulf ? ? D CYS 6 SG ? ? ? 1_555 D CYS 103 SG ? ? A CYS 6 A CYS 103 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf3 disulf ? ? E CYS 2 SG ? ? ? 1_555 E CYS 10 SG ? ? B CYS 2 B CYS 10 1_555 ? ? ? ? ? ? ? 2.017 ? ? disulf4 disulf ? ? E CYS 6 SG ? ? ? 1_555 E CYS 103 SG ? ? B CYS 6 B CYS 103 1_555 ? ? ? ? ? ? ? 2.024 ? ? covale1 covale both ? A G 1 "O3'" ? ? ? 1_555 A U34 2 P ? ? C G 105 C U34 106 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale2 covale both ? B G 1 "O3'" ? ? ? 1_555 B U34 2 P ? ? D G 105 D U34 106 1_555 ? ? ? ? ? ? ? 1.579 ? ? covale3 covale both ? C G 1 "O3'" ? ? ? 1_555 C U34 2 P ? ? E G 105 E U34 106 1_555 ? ? ? ? ? ? ? 1.599 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS D 2 ? CYS D 10 ? CYS A 2 ? 1_555 CYS A 10 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS D 6 ? CYS D 103 ? CYS A 6 ? 1_555 CYS A 103 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS E 2 ? CYS E 10 ? CYS B 2 ? 1_555 CYS B 10 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS E 6 ? CYS E 103 ? CYS B 6 ? 1_555 CYS B 103 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 38 D . ? TYR 38 A PRO 39 D ? PRO 39 A 1 -0.07 2 SER 54 D . ? SER 54 A PRO 55 D ? PRO 55 A 1 1.24 3 TYR 38 E . ? TYR 38 B PRO 39 E ? PRO 39 B 1 1.06 4 SER 54 E . ? SER 54 B PRO 55 E ? PRO 55 B 1 -0.08 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR D 4 ? CYS D 6 ? TYR A 4 CYS A 6 A 2 ASN D 9 ? TYR D 11 ? ASN A 9 TYR A 11 B 1 HIS D 40 ? TYR D 42 ? HIS A 40 TYR A 42 B 2 TYR D 56 ? PRO D 60 ? TYR A 56 PRO A 60 B 3 ASP D 76 ? ASN D 81 ? ASP A 76 ASN A 81 B 4 LEU D 86 ? THR D 91 ? LEU A 86 THR A 91 C 1 TYR E 4 ? CYS E 6 ? TYR B 4 CYS B 6 C 2 ASN E 9 ? TYR E 11 ? ASN B 9 TYR B 11 D 1 HIS E 40 ? TYR E 42 ? HIS B 40 TYR B 42 D 2 TYR E 56 ? PRO E 60 ? TYR B 56 PRO B 60 D 3 ASP E 76 ? ASN E 81 ? ASP B 76 ASN B 81 D 4 LEU E 86 ? THR E 91 ? LEU B 86 THR B 91 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR D 4 ? O TYR A 4 N TYR D 11 ? N TYR A 11 B 1 2 O HIS D 40 ? O HIS A 40 N GLU D 58 ? N GLU A 58 B 2 3 O TYR D 57 ? O TYR A 57 N PHE D 80 ? N PHE A 80 B 3 4 O ARG D 77 ? O ARG A 77 N ILE D 90 ? N ILE A 90 C 1 2 O TYR E 4 ? O TYR B 4 N TYR E 11 ? N TYR B 11 D 1 2 O HIS E 40 ? O HIS B 40 N GLU E 58 ? N GLU B 58 D 2 3 O TYR E 57 ? O TYR B 57 N PHE E 80 ? N PHE B 80 D 3 4 O ARG E 77 ? O ARG B 77 N ILE E 90 ? N ILE B 90 # _pdbx_entry_details.entry_id 1B2M _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 C G 105 ? ? N7 C G 105 ? ? C8 C G 105 ? ? 99.58 104.30 -4.72 0.50 N 2 1 N7 C G 105 ? ? C8 C G 105 ? ? N9 C G 105 ? ? 120.05 113.10 6.95 0.50 N 3 1 C8 C G 105 ? ? N9 C G 105 ? ? C4 C G 105 ? ? 102.76 106.40 -3.64 0.40 N 4 1 C5 D G 105 ? ? N7 D G 105 ? ? C8 D G 105 ? ? 100.76 104.30 -3.54 0.50 N 5 1 N7 D G 105 ? ? C8 D G 105 ? ? N9 D G 105 ? ? 119.93 113.10 6.83 0.50 N 6 1 C8 D G 105 ? ? N9 D G 105 ? ? C4 D G 105 ? ? 102.92 106.40 -3.48 0.40 N 7 1 C5 E G 105 ? ? N7 E G 105 ? ? C8 E G 105 ? ? 100.24 104.30 -4.06 0.50 N 8 1 N7 E G 105 ? ? C8 E G 105 ? ? N9 E G 105 ? ? 119.92 113.10 6.82 0.50 N 9 1 C8 E G 105 ? ? N9 E G 105 ? ? C4 E G 105 ? ? 102.86 106.40 -3.54 0.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 37 ? ? 50.39 77.79 2 1 ASN A 44 ? ? 73.54 51.45 3 1 SER B 37 ? ? 50.17 76.12 4 1 ASN B 44 ? ? 73.23 41.60 5 1 THR B 93 ? ? -47.75 107.55 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A U34 2 C U34 106 ? U ;URIDINE 5'-MONOMETHYLPHOSPHATE ; 2 B U34 2 D U34 106 ? U ;URIDINE 5'-MONOMETHYLPHOSPHATE ; 3 C U34 2 E U34 106 ? U ;URIDINE 5'-MONOMETHYLPHOSPHATE ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 G OP3 O N N 88 G P P N N 89 G OP1 O N N 90 G OP2 O N N 91 G "O5'" O N N 92 G "C5'" C N N 93 G "C4'" C N R 94 G "O4'" O N N 95 G "C3'" C N S 96 G "O3'" O N N 97 G "C2'" C N R 98 G "O2'" O N N 99 G "C1'" C N R 100 G N9 N Y N 101 G C8 C Y N 102 G N7 N Y N 103 G C5 C Y N 104 G C6 C N N 105 G O6 O N N 106 G N1 N N N 107 G C2 C N N 108 G N2 N N N 109 G N3 N N N 110 G C4 C Y N 111 G HOP3 H N N 112 G HOP2 H N N 113 G "H5'" H N N 114 G "H5''" H N N 115 G "H4'" H N N 116 G "H3'" H N N 117 G "HO3'" H N N 118 G "H2'" H N N 119 G "HO2'" H N N 120 G "H1'" H N N 121 G H8 H N N 122 G H1 H N N 123 G H21 H N N 124 G H22 H N N 125 GLN N N N N 126 GLN CA C N S 127 GLN C C N N 128 GLN O O N N 129 GLN CB C N N 130 GLN CG C N N 131 GLN CD C N N 132 GLN OE1 O N N 133 GLN NE2 N N N 134 GLN OXT O N N 135 GLN H H N N 136 GLN H2 H N N 137 GLN HA H N N 138 GLN HB2 H N N 139 GLN HB3 H N N 140 GLN HG2 H N N 141 GLN HG3 H N N 142 GLN HE21 H N N 143 GLN HE22 H N N 144 GLN HXT H N N 145 GLU N N N N 146 GLU CA C N S 147 GLU C C N N 148 GLU O O N N 149 GLU CB C N N 150 GLU CG C N N 151 GLU CD C N N 152 GLU OE1 O N N 153 GLU OE2 O N N 154 GLU OXT O N N 155 GLU H H N N 156 GLU H2 H N N 157 GLU HA H N N 158 GLU HB2 H N N 159 GLU HB3 H N N 160 GLU HG2 H N N 161 GLU HG3 H N N 162 GLU HE2 H N N 163 GLU HXT H N N 164 GLY N N N N 165 GLY CA C N N 166 GLY C C N N 167 GLY O O N N 168 GLY OXT O N N 169 GLY H H N N 170 GLY H2 H N N 171 GLY HA2 H N N 172 GLY HA3 H N N 173 GLY HXT H N N 174 HIS N N N N 175 HIS CA C N S 176 HIS C C N N 177 HIS O O N N 178 HIS CB C N N 179 HIS CG C Y N 180 HIS ND1 N Y N 181 HIS CD2 C Y N 182 HIS CE1 C Y N 183 HIS NE2 N Y N 184 HIS OXT O N N 185 HIS H H N N 186 HIS H2 H N N 187 HIS HA H N N 188 HIS HB2 H N N 189 HIS HB3 H N N 190 HIS HD1 H N N 191 HIS HD2 H N N 192 HIS HE1 H N N 193 HIS HE2 H N N 194 HIS HXT H N N 195 HOH O O N N 196 HOH H1 H N N 197 HOH H2 H N N 198 ILE N N N N 199 ILE CA C N S 200 ILE C C N N 201 ILE O O N N 202 ILE CB C N S 203 ILE CG1 C N N 204 ILE CG2 C N N 205 ILE CD1 C N N 206 ILE OXT O N N 207 ILE H H N N 208 ILE H2 H N N 209 ILE HA H N N 210 ILE HB H N N 211 ILE HG12 H N N 212 ILE HG13 H N N 213 ILE HG21 H N N 214 ILE HG22 H N N 215 ILE HG23 H N N 216 ILE HD11 H N N 217 ILE HD12 H N N 218 ILE HD13 H N N 219 ILE HXT H N N 220 LEU N N N N 221 LEU CA C N S 222 LEU C C N N 223 LEU O O N N 224 LEU CB C N N 225 LEU CG C N N 226 LEU CD1 C N N 227 LEU CD2 C N N 228 LEU OXT O N N 229 LEU H H N N 230 LEU H2 H N N 231 LEU HA H N N 232 LEU HB2 H N N 233 LEU HB3 H N N 234 LEU HG H N N 235 LEU HD11 H N N 236 LEU HD12 H N N 237 LEU HD13 H N N 238 LEU HD21 H N N 239 LEU HD22 H N N 240 LEU HD23 H N N 241 LEU HXT H N N 242 LYS N N N N 243 LYS CA C N S 244 LYS C C N N 245 LYS O O N N 246 LYS CB C N N 247 LYS CG C N N 248 LYS CD C N N 249 LYS CE C N N 250 LYS NZ N N N 251 LYS OXT O N N 252 LYS H H N N 253 LYS H2 H N N 254 LYS HA H N N 255 LYS HB2 H N N 256 LYS HB3 H N N 257 LYS HG2 H N N 258 LYS HG3 H N N 259 LYS HD2 H N N 260 LYS HD3 H N N 261 LYS HE2 H N N 262 LYS HE3 H N N 263 LYS HZ1 H N N 264 LYS HZ2 H N N 265 LYS HZ3 H N N 266 LYS HXT H N N 267 PHE N N N N 268 PHE CA C N S 269 PHE C C N N 270 PHE O O N N 271 PHE CB C N N 272 PHE CG C Y N 273 PHE CD1 C Y N 274 PHE CD2 C Y N 275 PHE CE1 C Y N 276 PHE CE2 C Y N 277 PHE CZ C Y N 278 PHE OXT O N N 279 PHE H H N N 280 PHE H2 H N N 281 PHE HA H N N 282 PHE HB2 H N N 283 PHE HB3 H N N 284 PHE HD1 H N N 285 PHE HD2 H N N 286 PHE HE1 H N N 287 PHE HE2 H N N 288 PHE HZ H N N 289 PHE HXT H N N 290 PRO N N N N 291 PRO CA C N S 292 PRO C C N N 293 PRO O O N N 294 PRO CB C N N 295 PRO CG C N N 296 PRO CD C N N 297 PRO OXT O N N 298 PRO H H N N 299 PRO HA H N N 300 PRO HB2 H N N 301 PRO HB3 H N N 302 PRO HG2 H N N 303 PRO HG3 H N N 304 PRO HD2 H N N 305 PRO HD3 H N N 306 PRO HXT H N N 307 SER N N N N 308 SER CA C N S 309 SER C C N N 310 SER O O N N 311 SER CB C N N 312 SER OG O N N 313 SER OXT O N N 314 SER H H N N 315 SER H2 H N N 316 SER HA H N N 317 SER HB2 H N N 318 SER HB3 H N N 319 SER HG H N N 320 SER HXT H N N 321 THR N N N N 322 THR CA C N S 323 THR C C N N 324 THR O O N N 325 THR CB C N R 326 THR OG1 O N N 327 THR CG2 C N N 328 THR OXT O N N 329 THR H H N N 330 THR H2 H N N 331 THR HA H N N 332 THR HB H N N 333 THR HG1 H N N 334 THR HG21 H N N 335 THR HG22 H N N 336 THR HG23 H N N 337 THR HXT H N N 338 TRP N N N N 339 TRP CA C N S 340 TRP C C N N 341 TRP O O N N 342 TRP CB C N N 343 TRP CG C Y N 344 TRP CD1 C Y N 345 TRP CD2 C Y N 346 TRP NE1 N Y N 347 TRP CE2 C Y N 348 TRP CE3 C Y N 349 TRP CZ2 C Y N 350 TRP CZ3 C Y N 351 TRP CH2 C Y N 352 TRP OXT O N N 353 TRP H H N N 354 TRP H2 H N N 355 TRP HA H N N 356 TRP HB2 H N N 357 TRP HB3 H N N 358 TRP HD1 H N N 359 TRP HE1 H N N 360 TRP HE3 H N N 361 TRP HZ2 H N N 362 TRP HZ3 H N N 363 TRP HH2 H N N 364 TRP HXT H N N 365 TYR N N N N 366 TYR CA C N S 367 TYR C C N N 368 TYR O O N N 369 TYR CB C N N 370 TYR CG C Y N 371 TYR CD1 C Y N 372 TYR CD2 C Y N 373 TYR CE1 C Y N 374 TYR CE2 C Y N 375 TYR CZ C Y N 376 TYR OH O N N 377 TYR OXT O N N 378 TYR H H N N 379 TYR H2 H N N 380 TYR HA H N N 381 TYR HB2 H N N 382 TYR HB3 H N N 383 TYR HD1 H N N 384 TYR HD2 H N N 385 TYR HE1 H N N 386 TYR HE2 H N N 387 TYR HH H N N 388 TYR HXT H N N 389 U34 OXT O N N 390 U34 O3P O N N 391 U34 P P N N 392 U34 O1P O N N 393 U34 O2P O N N 394 U34 "C5'" C N N 395 U34 "C4'" C N R 396 U34 "O4'" O N N 397 U34 "C3'" C N S 398 U34 "O3'" O N N 399 U34 "C2'" C N R 400 U34 "O2'" O N N 401 U34 "C1'" C N R 402 U34 N1 N N N 403 U34 C2 C N N 404 U34 O2 O N N 405 U34 N3 N N N 406 U34 C4 C N N 407 U34 O4 O N N 408 U34 C5 C N N 409 U34 C C N S 410 U34 C6 C N N 411 U34 HXT H N N 412 U34 H3P H N N 413 U34 H2P H N N 414 U34 "H5'1" H N N 415 U34 "H5'2" H N N 416 U34 "H4'" H N N 417 U34 "H3'" H N N 418 U34 HA H N N 419 U34 "H2'" H N N 420 U34 HB H N N 421 U34 "H1'" H N N 422 U34 H3 H N N 423 U34 H5 H N N 424 U34 H H N N 425 U34 H6 H N N 426 VAL N N N N 427 VAL CA C N S 428 VAL C C N N 429 VAL O O N N 430 VAL CB C N N 431 VAL CG1 C N N 432 VAL CG2 C N N 433 VAL OXT O N N 434 VAL H H N N 435 VAL H2 H N N 436 VAL HA H N N 437 VAL HB H N N 438 VAL HG11 H N N 439 VAL HG12 H N N 440 VAL HG13 H N N 441 VAL HG21 H N N 442 VAL HG22 H N N 443 VAL HG23 H N N 444 VAL HXT H N N 445 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 G OP3 P sing N N 83 G OP3 HOP3 sing N N 84 G P OP1 doub N N 85 G P OP2 sing N N 86 G P "O5'" sing N N 87 G OP2 HOP2 sing N N 88 G "O5'" "C5'" sing N N 89 G "C5'" "C4'" sing N N 90 G "C5'" "H5'" sing N N 91 G "C5'" "H5''" sing N N 92 G "C4'" "O4'" sing N N 93 G "C4'" "C3'" sing N N 94 G "C4'" "H4'" sing N N 95 G "O4'" "C1'" sing N N 96 G "C3'" "O3'" sing N N 97 G "C3'" "C2'" sing N N 98 G "C3'" "H3'" sing N N 99 G "O3'" "HO3'" sing N N 100 G "C2'" "O2'" sing N N 101 G "C2'" "C1'" sing N N 102 G "C2'" "H2'" sing N N 103 G "O2'" "HO2'" sing N N 104 G "C1'" N9 sing N N 105 G "C1'" "H1'" sing N N 106 G N9 C8 sing Y N 107 G N9 C4 sing Y N 108 G C8 N7 doub Y N 109 G C8 H8 sing N N 110 G N7 C5 sing Y N 111 G C5 C6 sing N N 112 G C5 C4 doub Y N 113 G C6 O6 doub N N 114 G C6 N1 sing N N 115 G N1 C2 sing N N 116 G N1 H1 sing N N 117 G C2 N2 sing N N 118 G C2 N3 doub N N 119 G N2 H21 sing N N 120 G N2 H22 sing N N 121 G N3 C4 sing N N 122 GLN N CA sing N N 123 GLN N H sing N N 124 GLN N H2 sing N N 125 GLN CA C sing N N 126 GLN CA CB sing N N 127 GLN CA HA sing N N 128 GLN C O doub N N 129 GLN C OXT sing N N 130 GLN CB CG sing N N 131 GLN CB HB2 sing N N 132 GLN CB HB3 sing N N 133 GLN CG CD sing N N 134 GLN CG HG2 sing N N 135 GLN CG HG3 sing N N 136 GLN CD OE1 doub N N 137 GLN CD NE2 sing N N 138 GLN NE2 HE21 sing N N 139 GLN NE2 HE22 sing N N 140 GLN OXT HXT sing N N 141 GLU N CA sing N N 142 GLU N H sing N N 143 GLU N H2 sing N N 144 GLU CA C sing N N 145 GLU CA CB sing N N 146 GLU CA HA sing N N 147 GLU C O doub N N 148 GLU C OXT sing N N 149 GLU CB CG sing N N 150 GLU CB HB2 sing N N 151 GLU CB HB3 sing N N 152 GLU CG CD sing N N 153 GLU CG HG2 sing N N 154 GLU CG HG3 sing N N 155 GLU CD OE1 doub N N 156 GLU CD OE2 sing N N 157 GLU OE2 HE2 sing N N 158 GLU OXT HXT sing N N 159 GLY N CA sing N N 160 GLY N H sing N N 161 GLY N H2 sing N N 162 GLY CA C sing N N 163 GLY CA HA2 sing N N 164 GLY CA HA3 sing N N 165 GLY C O doub N N 166 GLY C OXT sing N N 167 GLY OXT HXT sing N N 168 HIS N CA sing N N 169 HIS N H sing N N 170 HIS N H2 sing N N 171 HIS CA C sing N N 172 HIS CA CB sing N N 173 HIS CA HA sing N N 174 HIS C O doub N N 175 HIS C OXT sing N N 176 HIS CB CG sing N N 177 HIS CB HB2 sing N N 178 HIS CB HB3 sing N N 179 HIS CG ND1 sing Y N 180 HIS CG CD2 doub Y N 181 HIS ND1 CE1 doub Y N 182 HIS ND1 HD1 sing N N 183 HIS CD2 NE2 sing Y N 184 HIS CD2 HD2 sing N N 185 HIS CE1 NE2 sing Y N 186 HIS CE1 HE1 sing N N 187 HIS NE2 HE2 sing N N 188 HIS OXT HXT sing N N 189 HOH O H1 sing N N 190 HOH O H2 sing N N 191 ILE N CA sing N N 192 ILE N H sing N N 193 ILE N H2 sing N N 194 ILE CA C sing N N 195 ILE CA CB sing N N 196 ILE CA HA sing N N 197 ILE C O doub N N 198 ILE C OXT sing N N 199 ILE CB CG1 sing N N 200 ILE CB CG2 sing N N 201 ILE CB HB sing N N 202 ILE CG1 CD1 sing N N 203 ILE CG1 HG12 sing N N 204 ILE CG1 HG13 sing N N 205 ILE CG2 HG21 sing N N 206 ILE CG2 HG22 sing N N 207 ILE CG2 HG23 sing N N 208 ILE CD1 HD11 sing N N 209 ILE CD1 HD12 sing N N 210 ILE CD1 HD13 sing N N 211 ILE OXT HXT sing N N 212 LEU N CA sing N N 213 LEU N H sing N N 214 LEU N H2 sing N N 215 LEU CA C sing N N 216 LEU CA CB sing N N 217 LEU CA HA sing N N 218 LEU C O doub N N 219 LEU C OXT sing N N 220 LEU CB CG sing N N 221 LEU CB HB2 sing N N 222 LEU CB HB3 sing N N 223 LEU CG CD1 sing N N 224 LEU CG CD2 sing N N 225 LEU CG HG sing N N 226 LEU CD1 HD11 sing N N 227 LEU CD1 HD12 sing N N 228 LEU CD1 HD13 sing N N 229 LEU CD2 HD21 sing N N 230 LEU CD2 HD22 sing N N 231 LEU CD2 HD23 sing N N 232 LEU OXT HXT sing N N 233 LYS N CA sing N N 234 LYS N H sing N N 235 LYS N H2 sing N N 236 LYS CA C sing N N 237 LYS CA CB sing N N 238 LYS CA HA sing N N 239 LYS C O doub N N 240 LYS C OXT sing N N 241 LYS CB CG sing N N 242 LYS CB HB2 sing N N 243 LYS CB HB3 sing N N 244 LYS CG CD sing N N 245 LYS CG HG2 sing N N 246 LYS CG HG3 sing N N 247 LYS CD CE sing N N 248 LYS CD HD2 sing N N 249 LYS CD HD3 sing N N 250 LYS CE NZ sing N N 251 LYS CE HE2 sing N N 252 LYS CE HE3 sing N N 253 LYS NZ HZ1 sing N N 254 LYS NZ HZ2 sing N N 255 LYS NZ HZ3 sing N N 256 LYS OXT HXT sing N N 257 PHE N CA sing N N 258 PHE N H sing N N 259 PHE N H2 sing N N 260 PHE CA C sing N N 261 PHE CA CB sing N N 262 PHE CA HA sing N N 263 PHE C O doub N N 264 PHE C OXT sing N N 265 PHE CB CG sing N N 266 PHE CB HB2 sing N N 267 PHE CB HB3 sing N N 268 PHE CG CD1 doub Y N 269 PHE CG CD2 sing Y N 270 PHE CD1 CE1 sing Y N 271 PHE CD1 HD1 sing N N 272 PHE CD2 CE2 doub Y N 273 PHE CD2 HD2 sing N N 274 PHE CE1 CZ doub Y N 275 PHE CE1 HE1 sing N N 276 PHE CE2 CZ sing Y N 277 PHE CE2 HE2 sing N N 278 PHE CZ HZ sing N N 279 PHE OXT HXT sing N N 280 PRO N CA sing N N 281 PRO N CD sing N N 282 PRO N H sing N N 283 PRO CA C sing N N 284 PRO CA CB sing N N 285 PRO CA HA sing N N 286 PRO C O doub N N 287 PRO C OXT sing N N 288 PRO CB CG sing N N 289 PRO CB HB2 sing N N 290 PRO CB HB3 sing N N 291 PRO CG CD sing N N 292 PRO CG HG2 sing N N 293 PRO CG HG3 sing N N 294 PRO CD HD2 sing N N 295 PRO CD HD3 sing N N 296 PRO OXT HXT sing N N 297 SER N CA sing N N 298 SER N H sing N N 299 SER N H2 sing N N 300 SER CA C sing N N 301 SER CA CB sing N N 302 SER CA HA sing N N 303 SER C O doub N N 304 SER C OXT sing N N 305 SER CB OG sing N N 306 SER CB HB2 sing N N 307 SER CB HB3 sing N N 308 SER OG HG sing N N 309 SER OXT HXT sing N N 310 THR N CA sing N N 311 THR N H sing N N 312 THR N H2 sing N N 313 THR CA C sing N N 314 THR CA CB sing N N 315 THR CA HA sing N N 316 THR C O doub N N 317 THR C OXT sing N N 318 THR CB OG1 sing N N 319 THR CB CG2 sing N N 320 THR CB HB sing N N 321 THR OG1 HG1 sing N N 322 THR CG2 HG21 sing N N 323 THR CG2 HG22 sing N N 324 THR CG2 HG23 sing N N 325 THR OXT HXT sing N N 326 TRP N CA sing N N 327 TRP N H sing N N 328 TRP N H2 sing N N 329 TRP CA C sing N N 330 TRP CA CB sing N N 331 TRP CA HA sing N N 332 TRP C O doub N N 333 TRP C OXT sing N N 334 TRP CB CG sing N N 335 TRP CB HB2 sing N N 336 TRP CB HB3 sing N N 337 TRP CG CD1 doub Y N 338 TRP CG CD2 sing Y N 339 TRP CD1 NE1 sing Y N 340 TRP CD1 HD1 sing N N 341 TRP CD2 CE2 doub Y N 342 TRP CD2 CE3 sing Y N 343 TRP NE1 CE2 sing Y N 344 TRP NE1 HE1 sing N N 345 TRP CE2 CZ2 sing Y N 346 TRP CE3 CZ3 doub Y N 347 TRP CE3 HE3 sing N N 348 TRP CZ2 CH2 doub Y N 349 TRP CZ2 HZ2 sing N N 350 TRP CZ3 CH2 sing Y N 351 TRP CZ3 HZ3 sing N N 352 TRP CH2 HH2 sing N N 353 TRP OXT HXT sing N N 354 TYR N CA sing N N 355 TYR N H sing N N 356 TYR N H2 sing N N 357 TYR CA C sing N N 358 TYR CA CB sing N N 359 TYR CA HA sing N N 360 TYR C O doub N N 361 TYR C OXT sing N N 362 TYR CB CG sing N N 363 TYR CB HB2 sing N N 364 TYR CB HB3 sing N N 365 TYR CG CD1 doub Y N 366 TYR CG CD2 sing Y N 367 TYR CD1 CE1 sing Y N 368 TYR CD1 HD1 sing N N 369 TYR CD2 CE2 doub Y N 370 TYR CD2 HD2 sing N N 371 TYR CE1 CZ doub Y N 372 TYR CE1 HE1 sing N N 373 TYR CE2 CZ sing Y N 374 TYR CE2 HE2 sing N N 375 TYR CZ OH sing N N 376 TYR OH HH sing N N 377 TYR OXT HXT sing N N 378 U34 OXT C sing N N 379 U34 OXT HXT sing N N 380 U34 O3P P sing N N 381 U34 O3P H3P sing N N 382 U34 P O1P doub N N 383 U34 P O2P sing N N 384 U34 P C sing N N 385 U34 O2P H2P sing N N 386 U34 "C5'" "C4'" sing N N 387 U34 "C5'" C sing N N 388 U34 "C5'" "H5'1" sing N N 389 U34 "C5'" "H5'2" sing N N 390 U34 "C4'" "O4'" sing N N 391 U34 "C4'" "C3'" sing N N 392 U34 "C4'" "H4'" sing N N 393 U34 "O4'" "C1'" sing N N 394 U34 "C3'" "O3'" sing N N 395 U34 "C3'" "C2'" sing N N 396 U34 "C3'" "H3'" sing N N 397 U34 "O3'" HA sing N N 398 U34 "C2'" "O2'" sing N N 399 U34 "C2'" "C1'" sing N N 400 U34 "C2'" "H2'" sing N N 401 U34 "O2'" HB sing N N 402 U34 "C1'" N1 sing N N 403 U34 "C1'" "H1'" sing N N 404 U34 N1 C2 sing N N 405 U34 N1 C6 sing N N 406 U34 C2 O2 doub N N 407 U34 C2 N3 sing N N 408 U34 N3 C4 sing N N 409 U34 N3 H3 sing N N 410 U34 C4 O4 doub N N 411 U34 C4 C5 sing N N 412 U34 C5 C6 doub N N 413 U34 C5 H5 sing N N 414 U34 C H sing N N 415 U34 C6 H6 sing N N 416 VAL N CA sing N N 417 VAL N H sing N N 418 VAL N H2 sing N N 419 VAL CA C sing N N 420 VAL CA CB sing N N 421 VAL CA HA sing N N 422 VAL C O doub N N 423 VAL C OXT sing N N 424 VAL CB CG1 sing N N 425 VAL CB CG2 sing N N 426 VAL CB HB sing N N 427 VAL CG1 HG11 sing N N 428 VAL CG1 HG12 sing N N 429 VAL CG1 HG13 sing N N 430 VAL CG2 HG21 sing N N 431 VAL CG2 HG22 sing N N 432 VAL CG2 HG23 sing N N 433 VAL OXT HXT sing N N 434 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1RNT _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 1B2M _atom_sites.fract_transf_matrix[1][1] 0.014304 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011075 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029429 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_